Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0499670 | RHN70244.1 | 87.455 | 279 | 12 | 1 | 1 | 256 | 1045 | 1323 | 7.09e-166 | 504 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0499670 | sp|Q9FWQ5|HAC12_ARATH | 36.620 | 284 | 130 | 5 | 1 | 251 | 1409 | 1675 | 2.53e-57 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0499670 | A0A396J0M7 | 87.455 | 279 | 12 | 1 | 1 | 256 | 1045 | 1323 | 3.39e-166 | 504 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0499670 | TR | TAZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0499670 | MtrunA17_Chr3g0133461 | 87.455 | 279 | 12 | 1 | 1 | 256 | 1045 | 1323 | 6.52e-170 | 504 |
| Msa0499670 | MtrunA17_Chr3g0138411 | 74.460 | 278 | 42 | 2 | 1 | 256 | 916 | 1186 | 1.59e-139 | 422 |
| Msa0499670 | MtrunA17_Chr5g0438991 | 66.797 | 256 | 55 | 3 | 1 | 256 | 729 | 954 | 1.47e-106 | 330 |
| Msa0499670 | MtrunA17_Chr6g0456861 | 64.341 | 258 | 60 | 3 | 1 | 256 | 532 | 759 | 6.68e-105 | 321 |
| Msa0499670 | MtrunA17_Chr5g0401991 | 63.542 | 192 | 38 | 3 | 6 | 195 | 60 | 221 | 2.57e-73 | 223 |
| Msa0499670 | MtrunA17_Chr4g0000031 | 36.585 | 287 | 125 | 6 | 1 | 251 | 1413 | 1678 | 1.25e-56 | 195 |
| Msa0499670 | MtrunA17_Chr0c02g0489811 | 75.926 | 54 | 13 | 0 | 50 | 103 | 5 | 58 | 7.09e-22 | 86.7 |
| Msa0499670 | MtrunA17_Chr6g0456911 | 75.000 | 52 | 13 | 0 | 53 | 104 | 7 | 58 | 2.49e-21 | 85.5 |
| Msa0499670 | MtrunA17_Chr7g0229221 | 72.222 | 54 | 15 | 0 | 50 | 103 | 5 | 58 | 2.16e-20 | 82.8 |
| Msa0499670 | MtrunA17_Chr0c02g0489731 | 70.370 | 54 | 16 | 0 | 50 | 103 | 5 | 58 | 6.36e-19 | 79.0 |
| Msa0499670 | MtrunA17_Chr6g0456851 | 55.385 | 65 | 29 | 0 | 40 | 104 | 807 | 871 | 6.36e-16 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0499670 | AT1G16710.6 | 36.620 | 284 | 130 | 5 | 1 | 251 | 1344 | 1610 | 2.30e-58 | 201 |
| Msa0499670 | AT1G16710.4 | 36.620 | 284 | 130 | 5 | 1 | 251 | 1344 | 1610 | 2.30e-58 | 201 |
| Msa0499670 | AT1G16710.5 | 36.620 | 284 | 130 | 5 | 1 | 251 | 1344 | 1610 | 2.30e-58 | 201 |
| Msa0499670 | AT1G16710.1 | 36.620 | 284 | 130 | 5 | 1 | 251 | 1409 | 1675 | 2.57e-58 | 201 |
| Msa0499670 | AT1G16710.2 | 36.620 | 284 | 130 | 5 | 1 | 251 | 1380 | 1646 | 2.80e-58 | 201 |
| Msa0499670 | AT1G16710.3 | 36.620 | 284 | 130 | 5 | 1 | 251 | 1383 | 1649 | 2.96e-58 | 201 |
| Msa0499670 | AT1G16710.10 | 36.620 | 284 | 130 | 5 | 1 | 251 | 1383 | 1649 | 2.96e-58 | 201 |
| Msa0499670 | AT1G16710.8 | 36.620 | 284 | 130 | 5 | 1 | 251 | 1383 | 1649 | 2.96e-58 | 201 |
| Msa0499670 | AT1G16710.7 | 36.620 | 284 | 130 | 5 | 1 | 251 | 1383 | 1649 | 2.96e-58 | 201 |
| Msa0499670 | AT1G79000.1 | 36.620 | 284 | 130 | 5 | 1 | 251 | 1400 | 1666 | 1.25e-57 | 199 |
| Msa0499670 | AT1G79000.3 | 36.620 | 284 | 130 | 5 | 1 | 251 | 1376 | 1642 | 1.31e-57 | 199 |
| Msa0499670 | AT1G79000.2 | 36.620 | 284 | 130 | 5 | 1 | 251 | 1400 | 1666 | 1.42e-57 | 199 |
| Msa0499670 | AT3G12980.2 | 33.793 | 290 | 134 | 8 | 1 | 257 | 1299 | 1563 | 1.45e-44 | 161 |
| Msa0499670 | AT3G12980.1 | 33.793 | 290 | 134 | 8 | 1 | 257 | 1380 | 1644 | 1.69e-44 | 161 |
| Msa0499670 | AT1G55970.1 | 30.714 | 280 | 144 | 7 | 1 | 248 | 1176 | 1437 | 3.28e-35 | 134 |
| Msa0499670 | AT1G55970.2 | 30.714 | 280 | 144 | 7 | 1 | 248 | 1162 | 1423 | 3.37e-35 | 134 |
| Msa0499670 | AT1G67220.1 | 29.514 | 288 | 143 | 8 | 1 | 249 | 1095 | 1361 | 9.32e-32 | 124 |
Find 47 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTAGATTATTTGAAAAT+AGG | 0.198691 | 3_4:+38996985 | Msa0499670:CDS |
| TCTCACATTTCCAGCTCTTT+TGG | 0.200246 | 3_4:-38997163 | None:intergenic |
| CACTGAATGCAAGGAAATTC+AGG | 0.241855 | 3_4:+38996619 | Msa0499670:CDS |
| TGATTCCTTGATTGATATAT+TGG | 0.275033 | 3_4:-38997317 | None:intergenic |
| GAGTAGATTATTTGAAAATA+GGG | 0.292484 | 3_4:+38996986 | Msa0499670:CDS |
| TTTGAGTCAACTTGTGTTCA+TGG | 0.292920 | 3_4:-38997241 | None:intergenic |
| CATTTGCTCTGCATGCTATA+AGG | 0.316886 | 3_4:+38997202 | Msa0499670:CDS |
| ATATCATTATGTTTAGTGTT+GGG | 0.350862 | 3_4:-38996954 | None:intergenic |
| GTGCGAAATTCGAGTGAATC+GGG | 0.363640 | 3_4:+38997562 | Msa0499670:CDS |
| AATATATCAATCAAGGAATC+AGG | 0.398544 | 3_4:+38997319 | Msa0499670:CDS |
| TGCAACTCGCCATTCTTTGA+TGG | 0.413348 | 3_4:-38996811 | None:intergenic |
| CACTCGAATTTCGCACCTAC+TGG | 0.416982 | 3_4:-38997555 | None:intergenic |
| CGAGTTGCATACACTTTGTC+AGG | 0.417455 | 3_4:+38996825 | Msa0499670:CDS |
| ATCAGGAGTCAAATGAGAAA+AGG | 0.432038 | 3_4:+38997336 | Msa0499670:CDS |
| AATATCATTATGTTTAGTGT+TGG | 0.457603 | 3_4:-38996955 | None:intergenic |
| CTTATAGCATGCAGAGCAAA+TGG | 0.457684 | 3_4:-38997201 | None:intergenic |
| CAAACTGAAACTGAGACTTC+TGG | 0.468204 | 3_4:-38997028 | None:intergenic |
| TGCCGTGAAGTGATAGTGTC+TGG | 0.473473 | 3_4:+38996581 | Msa0499670:CDS |
| TTCTTGATTTGAGAACAGTT+TGG | 0.474837 | 3_4:-38997518 | None:intergenic |
| ATGGGTGTGCATCAGAACTA+TGG | 0.476458 | 3_4:-38996792 | None:intergenic |
| TATCATTATGTTTAGTGTTG+GGG | 0.481563 | 3_4:-38996953 | None:intergenic |
| TTATACTTGCTGCTCACTCT+AGG | 0.483492 | 3_4:+38997612 | Msa0499670:CDS |
| CAAGACCAATATATCAATCA+AGG | 0.484393 | 3_4:+38997312 | Msa0499670:CDS |
| GGTGCGAAATTCGAGTGAAT+CGG | 0.490997 | 3_4:+38997561 | Msa0499670:CDS |
| AGTGTAGCATTCCACGGTGC+AGG | 0.496224 | 3_4:+38997651 | Msa0499670:CDS |
| TCCCAGACACTATCACTTCA+CGG | 0.498199 | 3_4:-38996583 | None:intergenic |
| TCAGGAGTCAAATGAGAAAA+GGG | 0.502725 | 3_4:+38997337 | Msa0499670:CDS |
| GCAACTCGCCATTCTTTGAT+GGG | 0.505596 | 3_4:-38996810 | None:intergenic |
| CTCTAGGAATTGCAAAGACT+CGG | 0.517971 | 3_4:+38997628 | Msa0499670:CDS |
| CATTATGTTTAGTGTTGGGG+GGG | 0.536864 | 3_4:-38996950 | None:intergenic |
| TTTCAAATAATCTACTCTCA+AGG | 0.542071 | 3_4:-38996980 | None:intergenic |
| ACAATGTATTCCAAAAGAGC+TGG | 0.547262 | 3_4:+38997153 | Msa0499670:CDS |
| ATCATTATGTTTAGTGTTGG+GGG | 0.552385 | 3_4:-38996952 | None:intergenic |
| TCTGCATGCTATAAGGATAG+AGG | 0.554961 | 3_4:+38997209 | Msa0499670:CDS |
| GAAAGTGACAAAGCAGTCGT+TGG | 0.555810 | 3_4:+38997869 | Msa0499670:CDS |
| GCAGAGCAAATGGTGCACTC+TGG | 0.556191 | 3_4:-38997191 | None:intergenic |
| GATGCACACCCATCAAAGAA+TGG | 0.560620 | 3_4:+38996802 | Msa0499670:CDS |
| AGGAAATTCAGGAGTGCGAA+AGG | 0.562968 | 3_4:+38996630 | Msa0499670:CDS |
| TCATTATGTTTAGTGTTGGG+GGG | 0.567543 | 3_4:-38996951 | None:intergenic |
| AAGATTCAGCATTAGCTGCA+CGG | 0.583221 | 3_4:-38997487 | None:intergenic |
| TGATAGTGTCTGGGAAGCGA+TGG | 0.590031 | 3_4:+38996591 | Msa0499670:CDS |
| TGCGAAATTCGAGTGAATCG+GGG | 0.624993 | 3_4:+38997563 | Msa0499670:CDS |
| GCCGTGAAGTGATAGTGTCT+GGG | 0.641094 | 3_4:+38996582 | Msa0499670:CDS |
| ACTCGGAGTGTAGCATTCCA+CGG | 0.643411 | 3_4:+38997645 | Msa0499670:CDS |
| AGCTGTTCTCTCATGCCAGT+AGG | 0.676221 | 3_4:+38997540 | Msa0499670:CDS |
| TCGAGGAATACTTGGCACGA+CGG | 0.681417 | 3_4:-38997058 | None:intergenic |
| ATAACAGCACACCTGCACCG+TGG | 0.748808 | 3_4:-38997662 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATATGTATTCATTTTAAA+GGG | - | chr3_4:38996697-38996716 | None:intergenic | 15.0% |
| !!! | AGTATATGTATTCATTTTAA+AGG | - | chr3_4:38996698-38996717 | None:intergenic | 15.0% |
| !!! | GTATATGTATTCATTTTAAA+GGG | - | chr3_4:38996697-38996716 | None:intergenic | 15.0% |
| !!! | AGTATATGTATTCATTTTAA+AGG | - | chr3_4:38996698-38996717 | None:intergenic | 15.0% |
| !! | ATATCATTATGTTTAGTGTT+GGG | - | chr3_4:38996957-38996976 | None:intergenic | 20.0% |
| !! | AATATCATTATGTTTAGTGT+TGG | - | chr3_4:38996958-38996977 | None:intergenic | 20.0% |
| !! | AGAGTAGATTATTTGAAAAT+AGG | + | chr3_4:38996985-38997004 | Msa0499670:CDS | 20.0% |
| !! | GAGTAGATTATTTGAAAATA+GGG | + | chr3_4:38996986-38997005 | Msa0499670:CDS | 20.0% |
| !! | TTTAACCATAAAAAATGACT+TGG | - | chr3_4:38997761-38997780 | None:intergenic | 20.0% |
| !!! | TATATTTATGTTGATTTTGC+AGG | + | chr3_4:38997805-38997824 | Msa0499670:intron | 20.0% |
| !!! | ATATTTATGTTGATTTTGCA+GGG | + | chr3_4:38997806-38997825 | Msa0499670:intron | 20.0% |
| !! | ATATCATTATGTTTAGTGTT+GGG | - | chr3_4:38996957-38996976 | None:intergenic | 20.0% |
| !! | AATATCATTATGTTTAGTGT+TGG | - | chr3_4:38996958-38996977 | None:intergenic | 20.0% |
| !! | AGAGTAGATTATTTGAAAAT+AGG | + | chr3_4:38996985-38997004 | Msa0499670:CDS | 20.0% |
| !! | GAGTAGATTATTTGAAAATA+GGG | + | chr3_4:38996986-38997005 | Msa0499670:CDS | 20.0% |
| !! | TTTAACCATAAAAAATGACT+TGG | - | chr3_4:38997761-38997780 | None:intergenic | 20.0% |
| !!! | TATATTTATGTTGATTTTGC+AGG | + | chr3_4:38997805-38997824 | Msa0499670:intron | 20.0% |
| !!! | ATATTTATGTTGATTTTGCA+GGG | + | chr3_4:38997806-38997825 | Msa0499670:intron | 20.0% |
| !!! | TATGTATTCATTTTAAAGGG+AGG | - | chr3_4:38996694-38996713 | None:intergenic | 25.0% |
| ! | TATTCAGTGCACAATAATTA+AGG | + | chr3_4:38996731-38996750 | Msa0499670:intron | 25.0% |
| ! | ATATGAAAAACATCAGGTTT+AGG | - | chr3_4:38996857-38996876 | None:intergenic | 25.0% |
| ! | AGAATCATATGAAAAACATC+AGG | - | chr3_4:38996863-38996882 | None:intergenic | 25.0% |
| ! | TATCATTATGTTTAGTGTTG+GGG | - | chr3_4:38996956-38996975 | None:intergenic | 25.0% |
| ! | TTTCAAATAATCTACTCTCA+AGG | - | chr3_4:38996983-38997002 | None:intergenic | 25.0% |
| ! | TGATTCCTTGATTGATATAT+TGG | - | chr3_4:38997320-38997339 | None:intergenic | 25.0% |
| ! | AATATATCAATCAAGGAATC+AGG | + | chr3_4:38997319-38997338 | Msa0499670:CDS | 25.0% |
| ! | GTATTGAAAACAACAAATCT+AGG | - | chr3_4:38997376-38997395 | None:intergenic | 25.0% |
| !!! | TTACTTTCTGACTTGTTTTT+TGG | + | chr3_4:38997730-38997749 | Msa0499670:intron | 25.0% |
| !!! | TACTTTCTGACTTGTTTTTT+GGG | + | chr3_4:38997731-38997750 | Msa0499670:intron | 25.0% |
| !!! | TATGTATTCATTTTAAAGGG+AGG | - | chr3_4:38996694-38996713 | None:intergenic | 25.0% |
| ! | TATTCAGTGCACAATAATTA+AGG | + | chr3_4:38996731-38996750 | Msa0499670:intron | 25.0% |
| ! | ATATGAAAAACATCAGGTTT+AGG | - | chr3_4:38996857-38996876 | None:intergenic | 25.0% |
| ! | AGAATCATATGAAAAACATC+AGG | - | chr3_4:38996863-38996882 | None:intergenic | 25.0% |
| ! | TATCATTATGTTTAGTGTTG+GGG | - | chr3_4:38996956-38996975 | None:intergenic | 25.0% |
| ! | TTTCAAATAATCTACTCTCA+AGG | - | chr3_4:38996983-38997002 | None:intergenic | 25.0% |
| ! | TGATTCCTTGATTGATATAT+TGG | - | chr3_4:38997320-38997339 | None:intergenic | 25.0% |
| ! | AATATATCAATCAAGGAATC+AGG | + | chr3_4:38997319-38997338 | Msa0499670:CDS | 25.0% |
| ! | GTATTGAAAACAACAAATCT+AGG | - | chr3_4:38997376-38997395 | None:intergenic | 25.0% |
| !!! | TTACTTTCTGACTTGTTTTT+TGG | + | chr3_4:38997730-38997749 | Msa0499670:intron | 25.0% |
| !!! | TACTTTCTGACTTGTTTTTT+GGG | + | chr3_4:38997731-38997750 | Msa0499670:intron | 25.0% |
| ! | GCACAATAATTAAGGCTTTT+TGG | + | chr3_4:38996739-38996758 | Msa0499670:intron | 30.0% |
| ! | TTGAATTGTCTTCCATTTTC+AGG | + | chr3_4:38996911-38996930 | Msa0499670:intron | 30.0% |
| ! | ATCATTATGTTTAGTGTTGG+GGG | - | chr3_4:38996955-38996974 | None:intergenic | 30.0% |
| TTTACAAAAGACATCAGAGT+AGG | - | chr3_4:38997110-38997129 | None:intergenic | 30.0% | |
| CAAGACCAATATATCAATCA+AGG | + | chr3_4:38997312-38997331 | Msa0499670:CDS | 30.0% | |
| ! | TTCTTGATTTGAGAACAGTT+TGG | - | chr3_4:38997521-38997540 | None:intergenic | 30.0% |
| !!! | GACAACCAAGTCATTTTTTA+TGG | + | chr3_4:38997753-38997772 | Msa0499670:intron | 30.0% |
| ! | GCACAATAATTAAGGCTTTT+TGG | + | chr3_4:38996739-38996758 | Msa0499670:intron | 30.0% |
| ! | TTGAATTGTCTTCCATTTTC+AGG | + | chr3_4:38996911-38996930 | Msa0499670:intron | 30.0% |
| ! | ATCATTATGTTTAGTGTTGG+GGG | - | chr3_4:38996955-38996974 | None:intergenic | 30.0% |
| TTTACAAAAGACATCAGAGT+AGG | - | chr3_4:38997110-38997129 | None:intergenic | 30.0% | |
| CAAGACCAATATATCAATCA+AGG | + | chr3_4:38997312-38997331 | Msa0499670:CDS | 30.0% | |
| ! | TTCTTGATTTGAGAACAGTT+TGG | - | chr3_4:38997521-38997540 | None:intergenic | 30.0% |
| !!! | GACAACCAAGTCATTTTTTA+TGG | + | chr3_4:38997753-38997772 | Msa0499670:intron | 30.0% |
| ! | TCATTATGTTTAGTGTTGGG+GGG | - | chr3_4:38996954-38996973 | None:intergenic | 35.0% |
| ACAATGTATTCCAAAAGAGC+TGG | + | chr3_4:38997153-38997172 | Msa0499670:CDS | 35.0% | |
| TTTGAGTCAACTTGTGTTCA+TGG | - | chr3_4:38997244-38997263 | None:intergenic | 35.0% | |
| ATCAGGAGTCAAATGAGAAA+AGG | + | chr3_4:38997336-38997355 | Msa0499670:CDS | 35.0% | |
| TCAGGAGTCAAATGAGAAAA+GGG | + | chr3_4:38997337-38997356 | Msa0499670:CDS | 35.0% | |
| ! | ACCATATCTTTTTACACTGC+TGG | - | chr3_4:38997592-38997611 | None:intergenic | 35.0% |
| CAAAATCTCTCAAACTCTCT+AGG | - | chr3_4:38997703-38997722 | None:intergenic | 35.0% | |
| ! | CTAGAGAGTTTGAGAGATTT+TGG | + | chr3_4:38997701-38997720 | Msa0499670:intron | 35.0% |
| ! | TCATTATGTTTAGTGTTGGG+GGG | - | chr3_4:38996954-38996973 | None:intergenic | 35.0% |
| ACAATGTATTCCAAAAGAGC+TGG | + | chr3_4:38997153-38997172 | Msa0499670:CDS | 35.0% | |
| TTTGAGTCAACTTGTGTTCA+TGG | - | chr3_4:38997244-38997263 | None:intergenic | 35.0% | |
| ATCAGGAGTCAAATGAGAAA+AGG | + | chr3_4:38997336-38997355 | Msa0499670:CDS | 35.0% | |
| TCAGGAGTCAAATGAGAAAA+GGG | + | chr3_4:38997337-38997356 | Msa0499670:CDS | 35.0% | |
| ! | ACCATATCTTTTTACACTGC+TGG | - | chr3_4:38997592-38997611 | None:intergenic | 35.0% |
| CAAAATCTCTCAAACTCTCT+AGG | - | chr3_4:38997703-38997722 | None:intergenic | 35.0% | |
| ! | CTAGAGAGTTTGAGAGATTT+TGG | + | chr3_4:38997701-38997720 | Msa0499670:intron | 35.0% |
| !! | ATGGTTTTGCACTGAATGCA+AGG | + | chr3_4:38996610-38996629 | Msa0499670:CDS | 40.0% |
| CACTGAATGCAAGGAAATTC+AGG | + | chr3_4:38996619-38996638 | Msa0499670:CDS | 40.0% | |
| ! | CATTATGTTTAGTGTTGGGG+GGG | - | chr3_4:38996953-38996972 | None:intergenic | 40.0% |
| CAAACTGAAACTGAGACTTC+TGG | - | chr3_4:38997031-38997050 | None:intergenic | 40.0% | |
| TAGGATTGTGTAGATGGTAG+AGG | - | chr3_4:38997091-38997110 | None:intergenic | 40.0% | |
| TCAGAGTAGGATTGTGTAGA+TGG | - | chr3_4:38997097-38997116 | None:intergenic | 40.0% | |
| ! | TCTCACATTTCCAGCTCTTT+TGG | - | chr3_4:38997166-38997185 | None:intergenic | 40.0% |
| CTTATAGCATGCAGAGCAAA+TGG | - | chr3_4:38997204-38997223 | None:intergenic | 40.0% | |
| CATTTGCTCTGCATGCTATA+AGG | + | chr3_4:38997202-38997221 | Msa0499670:CDS | 40.0% | |
| TCTGCATGCTATAAGGATAG+AGG | + | chr3_4:38997209-38997228 | Msa0499670:CDS | 40.0% | |
| TTCACCATCTGTGTGTAAGT+CGG | - | chr3_4:38997434-38997453 | None:intergenic | 40.0% | |
| AAGATTCAGCATTAGCTGCA+CGG | - | chr3_4:38997490-38997509 | None:intergenic | 40.0% | |
| GCCAGCAGTGTAAAAAGATA+TGG | + | chr3_4:38997588-38997607 | Msa0499670:CDS | 40.0% | |
| ! | TTATACTTGCTGCTCACTCT+AGG | + | chr3_4:38997612-38997631 | Msa0499670:CDS | 40.0% |
| ! | CTCTAGGAATTGCAAAGACT+CGG | + | chr3_4:38997628-38997647 | Msa0499670:CDS | 40.0% |
| !! | ATGGTTTTGCACTGAATGCA+AGG | + | chr3_4:38996610-38996629 | Msa0499670:CDS | 40.0% |
| CACTGAATGCAAGGAAATTC+AGG | + | chr3_4:38996619-38996638 | Msa0499670:CDS | 40.0% | |
| ! | CATTATGTTTAGTGTTGGGG+GGG | - | chr3_4:38996953-38996972 | None:intergenic | 40.0% |
| CAAACTGAAACTGAGACTTC+TGG | - | chr3_4:38997031-38997050 | None:intergenic | 40.0% | |
| TAGGATTGTGTAGATGGTAG+AGG | - | chr3_4:38997091-38997110 | None:intergenic | 40.0% | |
| TCAGAGTAGGATTGTGTAGA+TGG | - | chr3_4:38997097-38997116 | None:intergenic | 40.0% | |
| ! | TCTCACATTTCCAGCTCTTT+TGG | - | chr3_4:38997166-38997185 | None:intergenic | 40.0% |
| CTTATAGCATGCAGAGCAAA+TGG | - | chr3_4:38997204-38997223 | None:intergenic | 40.0% | |
| CATTTGCTCTGCATGCTATA+AGG | + | chr3_4:38997202-38997221 | Msa0499670:CDS | 40.0% | |
| TCTGCATGCTATAAGGATAG+AGG | + | chr3_4:38997209-38997228 | Msa0499670:CDS | 40.0% | |
| TTCACCATCTGTGTGTAAGT+CGG | - | chr3_4:38997434-38997453 | None:intergenic | 40.0% | |
| AAGATTCAGCATTAGCTGCA+CGG | - | chr3_4:38997490-38997509 | None:intergenic | 40.0% | |
| GCCAGCAGTGTAAAAAGATA+TGG | + | chr3_4:38997588-38997607 | Msa0499670:CDS | 40.0% | |
| ! | TTATACTTGCTGCTCACTCT+AGG | + | chr3_4:38997612-38997631 | Msa0499670:CDS | 40.0% |
| ! | CTCTAGGAATTGCAAAGACT+CGG | + | chr3_4:38997628-38997647 | Msa0499670:CDS | 40.0% |
| TCCCAGACACTATCACTTCA+CGG | - | chr3_4:38996586-38996605 | None:intergenic | 45.0% | |
| ! | AGGAAATTCAGGAGTGCGAA+AGG | + | chr3_4:38996630-38996649 | Msa0499670:CDS | 45.0% |
| ATGGGTGTGCATCAGAACTA+TGG | - | chr3_4:38996795-38996814 | None:intergenic | 45.0% | |
| GATGCACACCCATCAAAGAA+TGG | + | chr3_4:38996802-38996821 | Msa0499670:CDS | 45.0% | |
| GCAACTCGCCATTCTTTGAT+GGG | - | chr3_4:38996813-38996832 | None:intergenic | 45.0% | |
| TGCAACTCGCCATTCTTTGA+TGG | - | chr3_4:38996814-38996833 | None:intergenic | 45.0% | |
| CGAGTTGCATACACTTTGTC+AGG | + | chr3_4:38996825-38996844 | Msa0499670:CDS | 45.0% | |
| CATCAACAACGGCCTGAAAA+TGG | - | chr3_4:38996926-38996945 | None:intergenic | 45.0% | |
| TGCCAAGTATTCCTCGATGA+TGG | + | chr3_4:38997064-38997083 | Msa0499670:intron | 45.0% | |
| GACCATCATCGAGGAATACT+TGG | - | chr3_4:38997069-38997088 | None:intergenic | 45.0% | |
| GGTGCGAAATTCGAGTGAAT+CGG | + | chr3_4:38997561-38997580 | Msa0499670:CDS | 45.0% | |
| GTGCGAAATTCGAGTGAATC+GGG | + | chr3_4:38997562-38997581 | Msa0499670:CDS | 45.0% | |
| TGCGAAATTCGAGTGAATCG+GGG | + | chr3_4:38997563-38997582 | Msa0499670:CDS | 45.0% | |
| GAAAGTGACAAAGCAGTCGT+TGG | + | chr3_4:38997869-38997888 | Msa0499670:CDS | 45.0% | |
| TCCCAGACACTATCACTTCA+CGG | - | chr3_4:38996586-38996605 | None:intergenic | 45.0% | |
| ! | AGGAAATTCAGGAGTGCGAA+AGG | + | chr3_4:38996630-38996649 | Msa0499670:CDS | 45.0% |
| ATGGGTGTGCATCAGAACTA+TGG | - | chr3_4:38996795-38996814 | None:intergenic | 45.0% | |
| GATGCACACCCATCAAAGAA+TGG | + | chr3_4:38996802-38996821 | Msa0499670:CDS | 45.0% | |
| GCAACTCGCCATTCTTTGAT+GGG | - | chr3_4:38996813-38996832 | None:intergenic | 45.0% | |
| TGCAACTCGCCATTCTTTGA+TGG | - | chr3_4:38996814-38996833 | None:intergenic | 45.0% | |
| CGAGTTGCATACACTTTGTC+AGG | + | chr3_4:38996825-38996844 | Msa0499670:CDS | 45.0% | |
| CATCAACAACGGCCTGAAAA+TGG | - | chr3_4:38996926-38996945 | None:intergenic | 45.0% | |
| TGCCAAGTATTCCTCGATGA+TGG | + | chr3_4:38997064-38997083 | Msa0499670:intron | 45.0% | |
| GACCATCATCGAGGAATACT+TGG | - | chr3_4:38997069-38997088 | None:intergenic | 45.0% | |
| GGTGCGAAATTCGAGTGAAT+CGG | + | chr3_4:38997561-38997580 | Msa0499670:CDS | 45.0% | |
| GTGCGAAATTCGAGTGAATC+GGG | + | chr3_4:38997562-38997581 | Msa0499670:CDS | 45.0% | |
| TGCGAAATTCGAGTGAATCG+GGG | + | chr3_4:38997563-38997582 | Msa0499670:CDS | 45.0% | |
| GAAAGTGACAAAGCAGTCGT+TGG | + | chr3_4:38997869-38997888 | Msa0499670:CDS | 45.0% | |
| ! | TGCCGTGAAGTGATAGTGTC+TGG | + | chr3_4:38996581-38996600 | Msa0499670:CDS | 50.0% |
| ! | GCCGTGAAGTGATAGTGTCT+GGG | + | chr3_4:38996582-38996601 | Msa0499670:CDS | 50.0% |
| ! | TGATAGTGTCTGGGAAGCGA+TGG | + | chr3_4:38996591-38996610 | Msa0499670:CDS | 50.0% |
| GGGGGGGATATCATCAACAA+CGG | - | chr3_4:38996937-38996956 | None:intergenic | 50.0% | |
| TCGAGGAATACTTGGCACGA+CGG | - | chr3_4:38997061-38997080 | None:intergenic | 50.0% | |
| ATGGTAGAGGACCATCATCG+AGG | - | chr3_4:38997078-38997097 | None:intergenic | 50.0% | |
| !! | CTTGCCGACTTACACACAGA+TGG | + | chr3_4:38997427-38997446 | Msa0499670:intron | 50.0% |
| AGCTGTTCTCTCATGCCAGT+AGG | + | chr3_4:38997540-38997559 | Msa0499670:CDS | 50.0% | |
| CACTCGAATTTCGCACCTAC+TGG | - | chr3_4:38997558-38997577 | None:intergenic | 50.0% | |
| ACTCGGAGTGTAGCATTCCA+CGG | + | chr3_4:38997645-38997664 | Msa0499670:CDS | 50.0% | |
| ! | TGCCGTGAAGTGATAGTGTC+TGG | + | chr3_4:38996581-38996600 | Msa0499670:CDS | 50.0% |
| ! | GCCGTGAAGTGATAGTGTCT+GGG | + | chr3_4:38996582-38996601 | Msa0499670:CDS | 50.0% |
| ! | TGATAGTGTCTGGGAAGCGA+TGG | + | chr3_4:38996591-38996610 | Msa0499670:CDS | 50.0% |
| GGGGGGGATATCATCAACAA+CGG | - | chr3_4:38996937-38996956 | None:intergenic | 50.0% | |
| TCGAGGAATACTTGGCACGA+CGG | - | chr3_4:38997061-38997080 | None:intergenic | 50.0% | |
| ATGGTAGAGGACCATCATCG+AGG | - | chr3_4:38997078-38997097 | None:intergenic | 50.0% | |
| !! | CTTGCCGACTTACACACAGA+TGG | + | chr3_4:38997427-38997446 | Msa0499670:intron | 50.0% |
| AGCTGTTCTCTCATGCCAGT+AGG | + | chr3_4:38997540-38997559 | Msa0499670:CDS | 50.0% | |
| CACTCGAATTTCGCACCTAC+TGG | - | chr3_4:38997558-38997577 | None:intergenic | 50.0% | |
| ACTCGGAGTGTAGCATTCCA+CGG | + | chr3_4:38997645-38997664 | Msa0499670:CDS | 50.0% | |
| GCAGAGCAAATGGTGCACTC+TGG | - | chr3_4:38997194-38997213 | None:intergenic | 55.0% | |
| AGTGTAGCATTCCACGGTGC+AGG | + | chr3_4:38997651-38997670 | Msa0499670:CDS | 55.0% | |
| ATAACAGCACACCTGCACCG+TGG | - | chr3_4:38997665-38997684 | None:intergenic | 55.0% | |
| GCAGAGCAAATGGTGCACTC+TGG | - | chr3_4:38997194-38997213 | None:intergenic | 55.0% | |
| AGTGTAGCATTCCACGGTGC+AGG | + | chr3_4:38997651-38997670 | Msa0499670:CDS | 55.0% | |
| ATAACAGCACACCTGCACCG+TGG | - | chr3_4:38997665-38997684 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 38996560 | 38997908 | 38996560 | ID=Msa0499670;Name=Msa0499670 |
| chr3_4 | mRNA | 38996560 | 38997908 | 38996560 | ID=Msa0499670-mRNA-1;Parent=Msa0499670;Name=Msa0499670-mRNA-1;_AED=0.31;_eAED=0.38;_QI=0|0|0|0.33|1|1|6|0|271 |
| chr3_4 | exon | 38996560 | 38996651 | 38996560 | ID=Msa0499670-mRNA-1:exon:7981;Parent=Msa0499670-mRNA-1 |
| chr3_4 | exon | 38996789 | 38996846 | 38996789 | ID=Msa0499670-mRNA-1:exon:7982;Parent=Msa0499670-mRNA-1 |
| chr3_4 | exon | 38996933 | 38997069 | 38996933 | ID=Msa0499670-mRNA-1:exon:7983;Parent=Msa0499670-mRNA-1 |
| chr3_4 | exon | 38997139 | 38997358 | 38997139 | ID=Msa0499670-mRNA-1:exon:7984;Parent=Msa0499670-mRNA-1 |
| chr3_4 | exon | 38997446 | 38997672 | 38997446 | ID=Msa0499670-mRNA-1:exon:7985;Parent=Msa0499670-mRNA-1 |
| chr3_4 | exon | 38997827 | 38997908 | 38997827 | ID=Msa0499670-mRNA-1:exon:7986;Parent=Msa0499670-mRNA-1 |
| chr3_4 | CDS | 38996560 | 38996651 | 38996560 | ID=Msa0499670-mRNA-1:cds;Parent=Msa0499670-mRNA-1 |
| chr3_4 | CDS | 38996789 | 38996846 | 38996789 | ID=Msa0499670-mRNA-1:cds;Parent=Msa0499670-mRNA-1 |
| chr3_4 | CDS | 38996933 | 38997069 | 38996933 | ID=Msa0499670-mRNA-1:cds;Parent=Msa0499670-mRNA-1 |
| chr3_4 | CDS | 38997139 | 38997358 | 38997139 | ID=Msa0499670-mRNA-1:cds;Parent=Msa0499670-mRNA-1 |
| chr3_4 | CDS | 38997446 | 38997672 | 38997446 | ID=Msa0499670-mRNA-1:cds;Parent=Msa0499670-mRNA-1 |
| chr3_4 | CDS | 38997827 | 38997908 | 38997827 | ID=Msa0499670-mRNA-1:cds;Parent=Msa0499670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
