Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500290 | KEH35772.1 | 94.565 | 184 | 9 | 1 | 1 | 183 | 12 | 195 | 1.33e-110 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500290 | sp|Q6H805|ORR24_ORYSJ | 53.846 | 234 | 54 | 2 | 1 | 180 | 29 | 262 | 3.76e-72 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500290 | A0A072V1R9 | 94.565 | 184 | 9 | 1 | 1 | 183 | 12 | 195 | 6.34e-111 | 323 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0500290 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500290 | MtrunA17_Chr3g0134461 | 94.565 | 184 | 9 | 1 | 1 | 183 | 12 | 195 | 1.22e-114 | 323 |
| Msa0500290 | MtrunA17_Chr3g0134481 | 71.038 | 183 | 43 | 1 | 1 | 183 | 12 | 184 | 4.96e-85 | 248 |
| Msa0500290 | MtrunA17_Chr1g0149841 | 51.724 | 232 | 60 | 2 | 1 | 180 | 9 | 240 | 1.11e-70 | 222 |
| Msa0500290 | MtrunA17_Chr7g0275401 | 47.639 | 233 | 69 | 1 | 1 | 180 | 9 | 241 | 2.48e-67 | 207 |
| Msa0500290 | MtrunA17_Chr4g0067981 | 48.696 | 230 | 68 | 2 | 1 | 180 | 35 | 264 | 1.27e-63 | 207 |
| Msa0500290 | MtrunA17_Chr7g0275891 | 46.122 | 245 | 67 | 4 | 1 | 180 | 9 | 253 | 8.64e-63 | 197 |
| Msa0500290 | MtrunA17_Chr2g0294911 | 46.053 | 228 | 75 | 2 | 1 | 180 | 33 | 260 | 1.59e-61 | 200 |
| Msa0500290 | MtrunA17_Chr1g0149851 | 45.344 | 247 | 68 | 3 | 1 | 180 | 9 | 255 | 1.30e-59 | 194 |
| Msa0500290 | MtrunA17_Chr4g0074411 | 46.725 | 229 | 73 | 1 | 1 | 180 | 22 | 250 | 1.51e-59 | 195 |
| Msa0500290 | MtrunA17_Chr1g0161431 | 45.532 | 235 | 73 | 2 | 1 | 180 | 15 | 249 | 1.52e-59 | 196 |
| Msa0500290 | MtrunA17_Chr4g0074401 | 46.552 | 232 | 72 | 1 | 1 | 180 | 21 | 252 | 4.27e-58 | 191 |
| Msa0500290 | MtrunA17_Chr3g0123131 | 43.103 | 232 | 80 | 2 | 1 | 180 | 17 | 248 | 2.40e-56 | 186 |
| Msa0500290 | MtrunA17_Chr3g0137101 | 73.171 | 123 | 33 | 0 | 1 | 123 | 12 | 134 | 1.29e-55 | 185 |
| Msa0500290 | MtrunA17_Chr3g0137101 | 81.356 | 59 | 11 | 0 | 122 | 180 | 189 | 247 | 3.79e-25 | 101 |
| Msa0500290 | MtrunA17_Chr8g0376881 | 43.913 | 230 | 79 | 2 | 1 | 180 | 29 | 258 | 8.78e-54 | 179 |
| Msa0500290 | MtrunA17_Chr4g0074421 | 47.802 | 182 | 48 | 1 | 46 | 180 | 1 | 182 | 1.24e-49 | 159 |
| Msa0500290 | MtrunA17_Chr4g0009851 | 40.000 | 205 | 97 | 3 | 1 | 180 | 15 | 218 | 2.49e-46 | 154 |
| Msa0500290 | MtrunA17_Chr2g0304841 | 64.463 | 121 | 43 | 0 | 1 | 121 | 22 | 142 | 7.34e-46 | 159 |
| Msa0500290 | MtrunA17_Chr2g0304841 | 68.519 | 54 | 17 | 0 | 127 | 180 | 209 | 262 | 1.75e-17 | 79.3 |
| Msa0500290 | MtrunA17_Chr1g0149831 | 46.893 | 177 | 39 | 3 | 56 | 180 | 1 | 174 | 5.27e-44 | 145 |
| Msa0500290 | MtrunA17_Chr4g0009901 | 36.098 | 205 | 105 | 3 | 1 | 180 | 14 | 217 | 7.01e-38 | 131 |
| Msa0500290 | MtrunA17_Chr6g0471041 | 33.495 | 206 | 111 | 3 | 2 | 182 | 19 | 223 | 1.42e-32 | 120 |
| Msa0500290 | MtrunA17_Chr4g0009981 | 36.585 | 164 | 79 | 2 | 42 | 180 | 2 | 165 | 1.77e-32 | 117 |
| Msa0500290 | MtrunA17_Chr8g0391911 | 30.342 | 234 | 109 | 6 | 1 | 182 | 13 | 244 | 1.36e-25 | 99.0 |
| Msa0500290 | MtrunA17_Chr4g0011071 | 32.374 | 139 | 69 | 2 | 44 | 157 | 36 | 174 | 3.60e-22 | 88.2 |
| Msa0500290 | MtrunA17_Chr8g0383961 | 36.496 | 137 | 84 | 2 | 1 | 134 | 18 | 154 | 3.20e-21 | 87.8 |
| Msa0500290 | MtrunA17_Chr4g0009991 | 37.815 | 119 | 50 | 2 | 89 | 183 | 1 | 119 | 8.66e-20 | 80.5 |
| Msa0500290 | MtrunA17_Chr3g0127941 | 31.138 | 167 | 107 | 3 | 1 | 160 | 56 | 221 | 2.40e-19 | 84.7 |
| Msa0500290 | MtrunA17_Chr6g0456631 | 33.884 | 121 | 77 | 2 | 1 | 119 | 13 | 132 | 4.49e-19 | 80.1 |
| Msa0500290 | MtrunA17_Chr8g0345901 | 36.667 | 120 | 73 | 1 | 3 | 119 | 38 | 157 | 1.44e-18 | 82.4 |
| Msa0500290 | MtrunA17_Chr4g0061021 | 31.452 | 124 | 82 | 1 | 1 | 121 | 33 | 156 | 1.82e-18 | 82.0 |
| Msa0500290 | MtrunA17_Chr3g0091641 | 32.258 | 124 | 81 | 1 | 1 | 121 | 24 | 147 | 6.02e-18 | 80.5 |
| Msa0500290 | MtrunA17_Chr1g0181811 | 31.690 | 142 | 94 | 1 | 1 | 139 | 85 | 226 | 7.24e-18 | 80.5 |
| Msa0500290 | MtrunA17_Chr5g0400241 | 38.017 | 121 | 69 | 3 | 1 | 119 | 18 | 134 | 1.73e-17 | 79.3 |
| Msa0500290 | MtrunA17_Chr5g0400241 | 52.632 | 57 | 27 | 0 | 124 | 180 | 304 | 360 | 2.17e-12 | 64.7 |
| Msa0500290 | MtrunA17_Chr7g0276361 | 32.609 | 138 | 89 | 2 | 1 | 134 | 14 | 151 | 1.96e-17 | 79.3 |
| Msa0500290 | MtrunA17_Chr4g0030271 | 35.246 | 122 | 76 | 2 | 1 | 119 | 89 | 210 | 4.89e-17 | 78.2 |
| Msa0500290 | MtrunA17_Chr6g0473731 | 28.889 | 135 | 65 | 1 | 77 | 180 | 10 | 144 | 3.03e-16 | 75.5 |
| Msa0500290 | MtrunA17_Chr4g0054981 | 31.933 | 119 | 79 | 1 | 1 | 119 | 18 | 134 | 2.34e-14 | 70.1 |
| Msa0500290 | MtrunA17_Chr4g0054981 | 51.515 | 66 | 29 | 2 | 116 | 180 | 296 | 359 | 3.05e-12 | 64.3 |
| Msa0500290 | MtrunA17_Chr5g0423031 | 35.065 | 77 | 49 | 1 | 1 | 77 | 14 | 89 | 3.92e-12 | 61.6 |
| Msa0500290 | MtrunA17_Chr8g0350761 | 32.203 | 118 | 79 | 1 | 1 | 117 | 21 | 138 | 5.53e-12 | 63.2 |
| Msa0500290 | MtrunA17_Chr4g0040481 | 47.170 | 53 | 28 | 0 | 128 | 180 | 155 | 207 | 2.68e-11 | 61.2 |
| Msa0500290 | MtrunA17_Chr4g0031961 | 52.941 | 51 | 24 | 0 | 130 | 180 | 130 | 180 | 5.43e-11 | 60.1 |
| Msa0500290 | MtrunA17_Chr2g0324891 | 47.170 | 53 | 28 | 0 | 128 | 180 | 158 | 210 | 5.59e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500290 | AT2G25180.1 | 53.070 | 228 | 59 | 2 | 1 | 180 | 17 | 244 | 9.39e-72 | 227 |
| Msa0500290 | AT4G31920.1 | 52.778 | 216 | 66 | 1 | 1 | 180 | 17 | 232 | 1.80e-70 | 223 |
| Msa0500290 | AT5G58080.1 | 46.696 | 227 | 73 | 2 | 1 | 180 | 18 | 243 | 1.08e-57 | 191 |
| Msa0500290 | AT1G67710.1 | 45.923 | 233 | 73 | 3 | 1 | 180 | 11 | 243 | 4.37e-57 | 187 |
| Msa0500290 | AT2G01760.1 | 40.167 | 239 | 84 | 3 | 1 | 180 | 11 | 249 | 8.31e-49 | 162 |
| Msa0500290 | AT2G01760.2 | 40.000 | 215 | 70 | 3 | 25 | 180 | 63 | 277 | 4.49e-43 | 148 |
| Msa0500290 | AT3G16857.2 | 53.191 | 141 | 54 | 1 | 1 | 141 | 37 | 165 | 6.70e-43 | 152 |
| Msa0500290 | AT3G16857.2 | 56.410 | 78 | 24 | 1 | 113 | 180 | 209 | 286 | 8.62e-20 | 86.3 |
| Msa0500290 | AT3G16857.1 | 53.191 | 141 | 54 | 1 | 1 | 141 | 37 | 165 | 6.88e-43 | 151 |
| Msa0500290 | AT3G16857.1 | 56.410 | 78 | 24 | 1 | 113 | 180 | 209 | 286 | 9.43e-20 | 86.3 |
| Msa0500290 | AT1G67710.2 | 43.820 | 178 | 47 | 3 | 56 | 180 | 1 | 178 | 2.27e-36 | 131 |
| Msa0500290 | AT5G49240.1 | 31.197 | 234 | 110 | 2 | 1 | 183 | 42 | 275 | 3.37e-34 | 122 |
| Msa0500290 | AT3G62670.1 | 34.956 | 226 | 98 | 5 | 2 | 180 | 42 | 265 | 4.00e-33 | 122 |
| Msa0500290 | AT3G16857.3 | 54.206 | 107 | 37 | 1 | 35 | 141 | 1 | 95 | 6.02e-33 | 124 |
| Msa0500290 | AT3G16857.3 | 56.410 | 78 | 24 | 1 | 113 | 180 | 139 | 216 | 9.26e-20 | 86.3 |
| Msa0500290 | AT1G49190.1 | 30.769 | 234 | 107 | 5 | 2 | 180 | 35 | 268 | 1.24e-28 | 110 |
| Msa0500290 | AT1G67710.3 | 39.873 | 158 | 42 | 3 | 76 | 180 | 12 | 169 | 3.42e-25 | 101 |
| Msa0500290 | AT1G49190.2 | 38.983 | 118 | 72 | 0 | 3 | 120 | 36 | 153 | 8.97e-24 | 97.8 |
| Msa0500290 | AT5G61380.1 | 33.871 | 124 | 79 | 1 | 1 | 121 | 19 | 142 | 4.45e-20 | 87.4 |
| Msa0500290 | AT2G46790.3 | 34.815 | 135 | 85 | 1 | 1 | 132 | 37 | 171 | 1.03e-19 | 85.9 |
| Msa0500290 | AT2G46790.1 | 34.815 | 135 | 85 | 1 | 1 | 132 | 37 | 171 | 1.06e-19 | 85.9 |
| Msa0500290 | AT5G24470.1 | 32.624 | 141 | 84 | 2 | 1 | 130 | 50 | 190 | 3.31e-19 | 84.7 |
| Msa0500290 | AT2G01760.3 | 51.515 | 66 | 31 | 1 | 56 | 120 | 1 | 66 | 4.26e-17 | 77.8 |
| Msa0500290 | AT2G01760.3 | 66.667 | 51 | 17 | 0 | 130 | 180 | 134 | 184 | 2.70e-16 | 75.5 |
| Msa0500290 | AT5G60100.7 | 35.246 | 122 | 76 | 1 | 1 | 119 | 64 | 185 | 1.19e-16 | 77.0 |
| Msa0500290 | AT5G60100.6 | 35.246 | 122 | 76 | 1 | 1 | 119 | 64 | 185 | 1.19e-16 | 77.0 |
| Msa0500290 | AT5G60100.4 | 35.246 | 122 | 76 | 1 | 1 | 119 | 64 | 185 | 1.19e-16 | 77.0 |
| Msa0500290 | AT5G02810.1 | 36.066 | 122 | 75 | 1 | 1 | 119 | 78 | 199 | 1.25e-16 | 77.4 |
| Msa0500290 | AT5G60100.2 | 35.246 | 122 | 76 | 1 | 1 | 119 | 64 | 185 | 1.27e-16 | 77.0 |
| Msa0500290 | AT5G60100.5 | 35.246 | 122 | 76 | 1 | 1 | 119 | 64 | 185 | 2.77e-16 | 76.3 |
| Msa0500290 | AT5G60100.3 | 35.246 | 122 | 76 | 1 | 1 | 119 | 64 | 185 | 2.77e-16 | 76.3 |
| Msa0500290 | AT5G60100.1 | 35.246 | 122 | 76 | 1 | 1 | 119 | 64 | 185 | 2.77e-16 | 76.3 |
| Msa0500290 | AT5G07210.2 | 29.012 | 162 | 95 | 4 | 1 | 161 | 16 | 158 | 8.66e-15 | 72.0 |
| Msa0500290 | AT4G18020.8 | 35.088 | 114 | 71 | 2 | 7 | 119 | 30 | 141 | 3.36e-13 | 67.4 |
| Msa0500290 | AT4G18020.8 | 46.970 | 66 | 33 | 1 | 117 | 180 | 280 | 345 | 4.89e-11 | 60.8 |
| Msa0500290 | AT4G18020.11 | 35.088 | 114 | 71 | 2 | 7 | 119 | 30 | 141 | 3.36e-13 | 67.4 |
| Msa0500290 | AT4G18020.11 | 46.970 | 66 | 33 | 1 | 117 | 180 | 280 | 345 | 4.89e-11 | 60.8 |
| Msa0500290 | AT4G18020.4 | 35.088 | 114 | 71 | 2 | 7 | 119 | 30 | 141 | 3.36e-13 | 67.4 |
| Msa0500290 | AT4G18020.4 | 46.970 | 66 | 33 | 1 | 117 | 180 | 280 | 345 | 4.89e-11 | 60.8 |
| Msa0500290 | AT4G18020.5 | 35.088 | 114 | 71 | 2 | 7 | 119 | 30 | 141 | 3.36e-13 | 67.4 |
| Msa0500290 | AT4G18020.5 | 46.970 | 66 | 33 | 1 | 117 | 180 | 280 | 345 | 4.89e-11 | 60.8 |
| Msa0500290 | AT4G18020.10 | 35.088 | 114 | 71 | 2 | 7 | 119 | 30 | 141 | 3.36e-13 | 67.4 |
| Msa0500290 | AT4G18020.10 | 46.970 | 66 | 33 | 1 | 117 | 180 | 280 | 345 | 4.89e-11 | 60.8 |
| Msa0500290 | AT4G18020.7 | 35.088 | 114 | 71 | 2 | 7 | 119 | 30 | 141 | 3.36e-13 | 67.4 |
| Msa0500290 | AT4G18020.7 | 46.970 | 66 | 33 | 1 | 117 | 180 | 280 | 345 | 4.89e-11 | 60.8 |
| Msa0500290 | AT4G18020.3 | 35.088 | 114 | 71 | 2 | 7 | 119 | 30 | 141 | 3.49e-13 | 67.4 |
| Msa0500290 | AT4G18020.3 | 46.970 | 66 | 33 | 1 | 117 | 180 | 280 | 345 | 4.74e-11 | 61.2 |
| Msa0500290 | AT4G18020.2 | 35.088 | 114 | 71 | 2 | 7 | 119 | 30 | 141 | 3.49e-13 | 67.4 |
| Msa0500290 | AT4G18020.2 | 46.970 | 66 | 33 | 1 | 117 | 180 | 280 | 345 | 4.74e-11 | 61.2 |
| Msa0500290 | AT4G18020.1 | 35.088 | 114 | 71 | 2 | 7 | 119 | 30 | 141 | 3.49e-13 | 67.4 |
| Msa0500290 | AT4G18020.1 | 46.970 | 66 | 33 | 1 | 117 | 180 | 280 | 345 | 4.74e-11 | 61.2 |
| Msa0500290 | AT4G18020.6 | 35.088 | 114 | 71 | 2 | 7 | 119 | 30 | 141 | 3.49e-13 | 67.4 |
| Msa0500290 | AT4G18020.6 | 46.970 | 66 | 33 | 1 | 117 | 180 | 280 | 345 | 4.74e-11 | 61.2 |
| Msa0500290 | AT4G18020.9 | 35.088 | 114 | 71 | 2 | 7 | 119 | 30 | 141 | 3.49e-13 | 67.4 |
| Msa0500290 | AT4G18020.9 | 46.970 | 66 | 33 | 1 | 117 | 180 | 280 | 345 | 4.74e-11 | 61.2 |
| Msa0500290 | AT5G44190.2 | 57.692 | 52 | 22 | 0 | 129 | 180 | 145 | 196 | 3.94e-13 | 66.6 |
| Msa0500290 | AT5G44190.1 | 57.692 | 52 | 22 | 0 | 129 | 180 | 145 | 196 | 4.92e-13 | 66.6 |
| Msa0500290 | AT5G07210.1 | 27.647 | 170 | 95 | 5 | 1 | 161 | 16 | 166 | 3.38e-12 | 64.3 |
| Msa0500290 | AT3G46640.3 | 52.542 | 59 | 26 | 1 | 124 | 180 | 135 | 193 | 1.18e-11 | 62.4 |
| Msa0500290 | AT3G46640.2 | 52.542 | 59 | 26 | 1 | 124 | 180 | 135 | 193 | 1.29e-11 | 62.4 |
| Msa0500290 | AT3G46640.1 | 52.542 | 59 | 26 | 1 | 124 | 180 | 135 | 193 | 1.29e-11 | 62.4 |
| Msa0500290 | AT2G40970.1 | 52.941 | 51 | 24 | 0 | 130 | 180 | 104 | 154 | 2.83e-11 | 60.8 |
| Msa0500290 | AT5G59570.2 | 50.847 | 59 | 27 | 1 | 124 | 180 | 132 | 190 | 3.39e-11 | 60.8 |
| Msa0500290 | AT5G59570.1 | 50.847 | 59 | 27 | 1 | 124 | 180 | 132 | 190 | 3.39e-11 | 60.8 |
| Msa0500290 | AT2G20570.1 | 52.830 | 53 | 25 | 0 | 128 | 180 | 150 | 202 | 4.17e-11 | 61.2 |
| Msa0500290 | AT2G20570.2 | 60.000 | 45 | 18 | 0 | 136 | 180 | 174 | 218 | 6.45e-11 | 60.5 |
Find 47 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGGTGCCTCTGAGTTTC+TGG | 0.051652 | 3_4:-40583698 | Msa0500290:CDS |
| GCTGTACCCGAAAAGATTCT+TGG | 0.366985 | 3_4:-40583247 | Msa0500290:CDS |
| AGGACGTGGGAAGCCATCTC+CGG | 0.385064 | 3_4:-40583195 | Msa0500290:CDS |
| TAGAGGAGCTAAAGACCATT+TGG | 0.400234 | 3_4:-40583660 | Msa0500290:CDS |
| CCATTTGGCAGCATGTAATT+CGG | 0.418909 | 3_4:-40583645 | Msa0500290:CDS |
| AGAAGAAGTCCCAGTCTGTT+TGG | 0.426238 | 3_4:-40583591 | Msa0500290:CDS |
| GGAACTTGAGACGGACCTTC+CGG | 0.436170 | 3_4:-40583849 | Msa0500290:CDS |
| GGTGAAACCTGTGAGATTAG+AGG | 0.438440 | 3_4:-40583677 | Msa0500290:CDS |
| GTTGCTGCTGTTAATCAGTT+AGG | 0.449852 | 3_4:-40583544 | Msa0500290:CDS |
| CCGAATTACATGCTGCCAAA+TGG | 0.458584 | 3_4:+40583645 | None:intergenic |
| AGCTTAAGTCCATCCATGTC+AGG | 0.462326 | 3_4:+40583884 | None:intergenic |
| GGACGTGGGAAGCCATCTCC+GGG | 0.474388 | 3_4:-40583194 | Msa0500290:CDS |
| TTTAGCTCCTCTAATCTCAC+AGG | 0.481770 | 3_4:+40583670 | None:intergenic |
| AAATATTACAAGGGAGGACG+TGG | 0.493697 | 3_4:-40583209 | Msa0500290:CDS |
| ACTAGAAAATTGCCCGGAGA+TGG | 0.513115 | 3_4:+40583182 | None:intergenic |
| GTCCCAGTCTGTTTGGTCTG+TGG | 0.513687 | 3_4:-40583584 | Msa0500290:CDS |
| ATGCGTGTTCTCGCCGTCGA+TGG | 0.517179 | 3_4:-40584608 | Msa0500290:CDS |
| CGATAATGAGCTAGTGATGA+AGG | 0.518138 | 3_4:-40583728 | Msa0500290:CDS |
| GCTCCACAGACCAAACAGAC+TGG | 0.522152 | 3_4:+40583581 | None:intergenic |
| TTCTAAATCCGAGAGATAAG+TGG | 0.525410 | 3_4:+40584580 | None:intergenic |
| GGGACTTCTTCTGAGCTGAT+AGG | 0.528115 | 3_4:+40583602 | None:intergenic |
| GGTGCACATCAGCGATTACC+AGG | 0.528972 | 3_4:+40583909 | None:intergenic |
| ACTTAAGCTGCTTGAACTTG+TGG | 0.534364 | 3_4:-40583870 | Msa0500290:CDS |
| CTCCACAGACCAAACAGACT+GGG | 0.537731 | 3_4:+40583582 | None:intergenic |
| TGGCGATTCCACTTATCTCT+CGG | 0.540916 | 3_4:-40584588 | Msa0500290:CDS |
| GTGCACCTGCCTGACATGGA+TGG | 0.546404 | 3_4:-40583893 | Msa0500290:CDS |
| GAACTGAACTTACTTACGAC+CGG | 0.554201 | 3_4:+40583830 | None:intergenic |
| GCATGTAATTCGGAAGAAGA+AGG | 0.566666 | 3_4:-40583635 | Msa0500290:CDS |
| TGAACTTGTGGAACTTGAGA+CGG | 0.569359 | 3_4:-40583858 | Msa0500290:CDS |
| TGATGTGCACCTGCCTGACA+TGG | 0.573968 | 3_4:-40583897 | Msa0500290:CDS |
| TAAGTCCATCCATGTCAGGC+AGG | 0.574028 | 3_4:+40583888 | None:intergenic |
| TGAATGTTGAAAATATTACA+AGG | 0.578744 | 3_4:-40583219 | Msa0500290:CDS |
| GACCGTGGTATTGACATGAT+CGG | 0.585397 | 3_4:+40584549 | None:intergenic |
| TAAAGGACTAGAAAATTGCC+CGG | 0.605859 | 3_4:+40583176 | None:intergenic |
| TGAACTTACTTACGACCGGA+AGG | 0.625105 | 3_4:+40583834 | None:intergenic |
| ATAAGTGGAATCGCCATCGA+CGG | 0.627981 | 3_4:+40584595 | None:intergenic |
| CCAGAAACTCAGAGGCACCA+TGG | 0.637813 | 3_4:+40583698 | None:intergenic |
| GAATGTTGAAAATATTACAA+GGG | 0.643931 | 3_4:-40583218 | Msa0500290:CDS |
| TAACAGCAGCAACAAACTTG+TGG | 0.645143 | 3_4:+40583554 | None:intergenic |
| TCGGAAGAAGAAGGACAATG+AGG | 0.649373 | 3_4:-40583626 | Msa0500290:CDS |
| TGTTGAAAATATTACAAGGG+AGG | 0.651126 | 3_4:-40583215 | Msa0500290:CDS |
| AAACAAAGACATGTTTGACC+TGG | 0.656788 | 3_4:-40583927 | Msa0500290:CDS |
| GTGATGAAGGCAGTTTACCA+TGG | 0.674402 | 3_4:-40583715 | Msa0500290:CDS |
| CTCCGATCATGTCAATACCA+CGG | 0.699650 | 3_4:-40584551 | Msa0500290:intron |
| CGTGGTATTGACATGATCGG+AGG | 0.711493 | 3_4:+40584552 | None:intergenic |
| AGGTTTCACCAGAAACTCAG+AGG | 0.716031 | 3_4:+40583690 | None:intergenic |
| AATATTACAAGGGAGGACGT+GGG | 0.729612 | 3_4:-40583208 | Msa0500290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATAAATCAAATAAAATT+GGG | + | chr3_4:40583288-40583307 | None:intergenic | 10.0% |
| !! | ATGAATAAATCAAATAAAAT+TGG | + | chr3_4:40583289-40583308 | None:intergenic | 10.0% |
| !! | TAAAAATGAGAAATAAAATT+CGG | + | chr3_4:40584346-40584365 | None:intergenic | 10.0% |
| !! | TGAATAAATCAAATAAAATT+GGG | + | chr3_4:40583288-40583307 | None:intergenic | 10.0% |
| !! | ATGAATAAATCAAATAAAAT+TGG | + | chr3_4:40583289-40583308 | None:intergenic | 10.0% |
| !! | TAAAAATGAGAAATAAAATT+CGG | + | chr3_4:40584346-40584365 | None:intergenic | 10.0% |
| !!! | TATGTTATTTATACACATTT+TGG | - | chr3_4:40583662-40583681 | Msa0500290:CDS | 15.0% |
| !!! | TTTAATTTATTTTCAATCTG+AGG | - | chr3_4:40584382-40584401 | Msa0500290:intron | 15.0% |
| !!! | TATGTTATTTATACACATTT+TGG | - | chr3_4:40583662-40583681 | Msa0500290:CDS | 15.0% |
| !!! | TTTAATTTATTTTCAATCTG+AGG | - | chr3_4:40584382-40584401 | Msa0500290:intron | 15.0% |
| !!! | ATGTTATTTATGTATTGTTG+CGG | - | chr3_4:40583788-40583807 | Msa0500290:intron | 20.0% |
| !! | AATAAAAATTGTTTGTGTTG+CGG | + | chr3_4:40584299-40584318 | None:intergenic | 20.0% |
| !! | TGAAAAAAACTTATGATGAT+AGG | - | chr3_4:40584406-40584425 | Msa0500290:intron | 20.0% |
| !! | TGAATGTTGAAAATATTACA+AGG | - | chr3_4:40584572-40584591 | Msa0500290:CDS | 20.0% |
| !! | GAATGTTGAAAATATTACAA+GGG | - | chr3_4:40584573-40584592 | Msa0500290:CDS | 20.0% |
| !!! | ATGTTATTTATGTATTGTTG+CGG | - | chr3_4:40583788-40583807 | Msa0500290:intron | 20.0% |
| !! | AATAAAAATTGTTTGTGTTG+CGG | + | chr3_4:40584299-40584318 | None:intergenic | 20.0% |
| !! | TGAAAAAAACTTATGATGAT+AGG | - | chr3_4:40584406-40584425 | Msa0500290:intron | 20.0% |
| !! | TGAATGTTGAAAATATTACA+AGG | - | chr3_4:40584572-40584591 | Msa0500290:CDS | 20.0% |
| !! | GAATGTTGAAAATATTACAA+GGG | - | chr3_4:40584573-40584592 | Msa0500290:CDS | 20.0% |
| ! | CATGCATTATACACATAAAT+TGG | + | chr3_4:40583321-40583340 | None:intergenic | 25.0% |
| ! | TATGTTTATGTAGAGAGATA+CGG | - | chr3_4:40583366-40583385 | Msa0500290:intron | 25.0% |
| !!! | TGATGTAGATTTTAGTTTGT+TGG | - | chr3_4:40583402-40583421 | Msa0500290:intron | 25.0% |
| ! | CACATTTATAAACACTATAG+AGG | + | chr3_4:40583502-40583521 | None:intergenic | 25.0% |
| ! | GAACTTACTTTGAATTCATT+TGG | - | chr3_4:40583556-40583575 | Msa0500290:CDS | 25.0% |
| !! | CTTTGAATTCATTTGGATTT+TGG | - | chr3_4:40583563-40583582 | Msa0500290:CDS | 25.0% |
| ! | ATTGTTCCTATACTATAACA+AGG | + | chr3_4:40583735-40583754 | None:intergenic | 25.0% |
| ! | TCATGTTAATGTTGTATTAC+TGG | - | chr3_4:40584516-40584535 | Msa0500290:intron | 25.0% |
| ! | CATGCATTATACACATAAAT+TGG | + | chr3_4:40583321-40583340 | None:intergenic | 25.0% |
| ! | TATGTTTATGTAGAGAGATA+CGG | - | chr3_4:40583366-40583385 | Msa0500290:intron | 25.0% |
| !!! | TGATGTAGATTTTAGTTTGT+TGG | - | chr3_4:40583402-40583421 | Msa0500290:intron | 25.0% |
| ! | CACATTTATAAACACTATAG+AGG | + | chr3_4:40583502-40583521 | None:intergenic | 25.0% |
| ! | GAACTTACTTTGAATTCATT+TGG | - | chr3_4:40583556-40583575 | Msa0500290:CDS | 25.0% |
| !! | CTTTGAATTCATTTGGATTT+TGG | - | chr3_4:40583563-40583582 | Msa0500290:CDS | 25.0% |
| ! | ATTGTTCCTATACTATAACA+AGG | + | chr3_4:40583735-40583754 | None:intergenic | 25.0% |
| ! | TCATGTTAATGTTGTATTAC+TGG | - | chr3_4:40584516-40584535 | Msa0500290:intron | 25.0% |
| ! | TGTTGATAAAAAGTTTGACC+TGG | - | chr3_4:40583624-40583643 | Msa0500290:CDS | 30.0% |
| ! | CAAACTCCTTGTTATAGTAT+AGG | - | chr3_4:40583726-40583745 | Msa0500290:CDS | 30.0% |
| TAATGAAACACTTCATGACA+TGG | + | chr3_4:40584479-40584498 | None:intergenic | 30.0% | |
| ! | ATCAAACCAAGAATCTTTTC+GGG | + | chr3_4:40584553-40584572 | None:intergenic | 30.0% |
| ! | CATCAAACCAAGAATCTTTT+CGG | + | chr3_4:40584554-40584573 | None:intergenic | 30.0% |
| TGTTGAAAATATTACAAGGG+AGG | - | chr3_4:40584576-40584595 | Msa0500290:CDS | 30.0% | |
| ! | TGTTGATAAAAAGTTTGACC+TGG | - | chr3_4:40583624-40583643 | Msa0500290:CDS | 30.0% |
| ! | CAAACTCCTTGTTATAGTAT+AGG | - | chr3_4:40583726-40583745 | Msa0500290:CDS | 30.0% |
| TAATGAAACACTTCATGACA+TGG | + | chr3_4:40584479-40584498 | None:intergenic | 30.0% | |
| ! | ATCAAACCAAGAATCTTTTC+GGG | + | chr3_4:40584553-40584572 | None:intergenic | 30.0% |
| ! | CATCAAACCAAGAATCTTTT+CGG | + | chr3_4:40584554-40584573 | None:intergenic | 30.0% |
| TGTTGAAAATATTACAAGGG+AGG | - | chr3_4:40584576-40584595 | Msa0500290:CDS | 30.0% | |
| TTCTAAATCCGAGAGATAAG+TGG | + | chr3_4:40583214-40583233 | None:intergenic | 35.0% | |
| ! | GTTTGTTGGAAATTCTGCTT+CGG | - | chr3_4:40583416-40583435 | Msa0500290:intron | 35.0% |
| AACAAGGAGTTTGTGAAACT+AGG | + | chr3_4:40583719-40583738 | None:intergenic | 35.0% | |
| AAACAAAGACATGTTTGACC+TGG | - | chr3_4:40583864-40583883 | Msa0500290:CDS | 35.0% | |
| ! | TTATGATGATAGGTGCTACA+TGG | - | chr3_4:40584416-40584435 | Msa0500290:intron | 35.0% |
| TAATGTTGTATTACTGGCAG+AGG | - | chr3_4:40584522-40584541 | Msa0500290:intron | 35.0% | |
| TTCTAAATCCGAGAGATAAG+TGG | + | chr3_4:40583214-40583233 | None:intergenic | 35.0% | |
| ! | GTTTGTTGGAAATTCTGCTT+CGG | - | chr3_4:40583416-40583435 | Msa0500290:intron | 35.0% |
| AACAAGGAGTTTGTGAAACT+AGG | + | chr3_4:40583719-40583738 | None:intergenic | 35.0% | |
| AAACAAAGACATGTTTGACC+TGG | - | chr3_4:40583864-40583883 | Msa0500290:CDS | 35.0% | |
| ! | TTATGATGATAGGTGCTACA+TGG | - | chr3_4:40584416-40584435 | Msa0500290:intron | 35.0% |
| TAATGTTGTATTACTGGCAG+AGG | - | chr3_4:40584522-40584541 | Msa0500290:intron | 35.0% | |
| AAAAGAAAAGAAGCAGACCG+TGG | + | chr3_4:40583260-40583279 | None:intergenic | 40.0% | |
| AATTAACCACCTCAAAGCCA+AGG | + | chr3_4:40583456-40583475 | None:intergenic | 40.0% | |
| GAGGTCATATCTAAGCAATG+TGG | + | chr3_4:40583483-40583502 | None:intergenic | 40.0% | |
| ATACCATAACAGCGATTACC+AGG | + | chr3_4:40583645-40583664 | None:intergenic | 40.0% | |
| GATCAAAGACTCCTAAGTCA+TGG | - | chr3_4:40583684-40583703 | Msa0500290:CDS | 40.0% | |
| GGTCAAACATACCATGACTT+AGG | + | chr3_4:40583698-40583717 | None:intergenic | 40.0% | |
| AACAGCTAGCGAAGCAAAAA+TGG | - | chr3_4:40583822-40583841 | Msa0500290:intron | 40.0% | |
| ACTTAAGCTGCTTGAACTTG+TGG | - | chr3_4:40583921-40583940 | Msa0500290:CDS | 40.0% | |
| TGAACTTGTGGAACTTGAGA+CGG | - | chr3_4:40583933-40583952 | Msa0500290:CDS | 40.0% | |
| GAACTGAACTTACTTACGAC+CGG | + | chr3_4:40583964-40583983 | None:intergenic | 40.0% | |
| CGATAATGAGCTAGTGATGA+AGG | - | chr3_4:40584063-40584082 | Msa0500290:intron | 40.0% | |
| ! | TTTAGCTCCTCTAATCTCAC+AGG | + | chr3_4:40584124-40584143 | None:intergenic | 40.0% |
| TAGAGGAGCTAAAGACCATT+TGG | - | chr3_4:40584131-40584150 | Msa0500290:intron | 40.0% | |
| CCATTTGGCAGCATGTAATT+CGG | - | chr3_4:40584146-40584165 | Msa0500290:intron | 40.0% | |
| GCATGTAATTCGGAAGAAGA+AGG | - | chr3_4:40584156-40584175 | Msa0500290:intron | 40.0% | |
| TAACAGCAGCAACAAACTTG+TGG | + | chr3_4:40584240-40584259 | None:intergenic | 40.0% | |
| GTTGCTGCTGTTAATCAGTT+AGG | - | chr3_4:40584247-40584266 | Msa0500290:intron | 40.0% | |
| TCAAGCTCGAGGAAATTGAT+AGG | + | chr3_4:40584323-40584342 | None:intergenic | 40.0% | |
| ATAAAATTCGGTCAAGCTCG+AGG | + | chr3_4:40584334-40584353 | None:intergenic | 40.0% | |
| AAATATTACAAGGGAGGACG+TGG | - | chr3_4:40584582-40584601 | Msa0500290:CDS | 40.0% | |
| AATATTACAAGGGAGGACGT+GGG | - | chr3_4:40584583-40584602 | Msa0500290:CDS | 40.0% | |
| AAAAGAAAAGAAGCAGACCG+TGG | + | chr3_4:40583260-40583279 | None:intergenic | 40.0% | |
| AATTAACCACCTCAAAGCCA+AGG | + | chr3_4:40583456-40583475 | None:intergenic | 40.0% | |
| GAGGTCATATCTAAGCAATG+TGG | + | chr3_4:40583483-40583502 | None:intergenic | 40.0% | |
| ATACCATAACAGCGATTACC+AGG | + | chr3_4:40583645-40583664 | None:intergenic | 40.0% | |
| GATCAAAGACTCCTAAGTCA+TGG | - | chr3_4:40583684-40583703 | Msa0500290:CDS | 40.0% | |
| GGTCAAACATACCATGACTT+AGG | + | chr3_4:40583698-40583717 | None:intergenic | 40.0% | |
| AACAGCTAGCGAAGCAAAAA+TGG | - | chr3_4:40583822-40583841 | Msa0500290:intron | 40.0% | |
| ACTTAAGCTGCTTGAACTTG+TGG | - | chr3_4:40583921-40583940 | Msa0500290:CDS | 40.0% | |
| TGAACTTGTGGAACTTGAGA+CGG | - | chr3_4:40583933-40583952 | Msa0500290:CDS | 40.0% | |
| GAACTGAACTTACTTACGAC+CGG | + | chr3_4:40583964-40583983 | None:intergenic | 40.0% | |
| CGATAATGAGCTAGTGATGA+AGG | - | chr3_4:40584063-40584082 | Msa0500290:intron | 40.0% | |
| ! | TTTAGCTCCTCTAATCTCAC+AGG | + | chr3_4:40584124-40584143 | None:intergenic | 40.0% |
| TAGAGGAGCTAAAGACCATT+TGG | - | chr3_4:40584131-40584150 | Msa0500290:intron | 40.0% | |
| CCATTTGGCAGCATGTAATT+CGG | - | chr3_4:40584146-40584165 | Msa0500290:intron | 40.0% | |
| GCATGTAATTCGGAAGAAGA+AGG | - | chr3_4:40584156-40584175 | Msa0500290:intron | 40.0% | |
| TAACAGCAGCAACAAACTTG+TGG | + | chr3_4:40584240-40584259 | None:intergenic | 40.0% | |
| GTTGCTGCTGTTAATCAGTT+AGG | - | chr3_4:40584247-40584266 | Msa0500290:intron | 40.0% | |
| TCAAGCTCGAGGAAATTGAT+AGG | + | chr3_4:40584323-40584342 | None:intergenic | 40.0% | |
| ATAAAATTCGGTCAAGCTCG+AGG | + | chr3_4:40584334-40584353 | None:intergenic | 40.0% | |
| AAATATTACAAGGGAGGACG+TGG | - | chr3_4:40584582-40584601 | Msa0500290:CDS | 40.0% | |
| AATATTACAAGGGAGGACGT+GGG | - | chr3_4:40584583-40584602 | Msa0500290:CDS | 40.0% | |
| ATAAGTGGAATCGCCATCGA+CGG | + | chr3_4:40583199-40583218 | None:intergenic | 45.0% | |
| TGGCGATTCCACTTATCTCT+CGG | - | chr3_4:40583203-40583222 | Msa0500290:CDS | 45.0% | |
| CTCCGATCATGTCAATACCA+CGG | - | chr3_4:40583240-40583259 | Msa0500290:CDS | 45.0% | |
| !! | GACCGTGGTATTGACATGAT+CGG | + | chr3_4:40583245-40583264 | None:intergenic | 45.0% |
| TTGGAAATTCTGCTTCGGTC+CGG | - | chr3_4:40583421-40583440 | Msa0500290:intron | 45.0% | |
| TGACCTGGTAATCGCTGTTA+TGG | - | chr3_4:40583639-40583658 | Msa0500290:CDS | 45.0% | |
| AGCTTAAGTCCATCCATGTC+AGG | + | chr3_4:40583910-40583929 | None:intergenic | 45.0% | |
| TGAACTTACTTACGACCGGA+AGG | + | chr3_4:40583960-40583979 | None:intergenic | 45.0% | |
| GTGATGAAGGCAGTTTACCA+TGG | - | chr3_4:40584076-40584095 | Msa0500290:intron | 45.0% | |
| AGGTTTCACCAGAAACTCAG+AGG | + | chr3_4:40584104-40584123 | None:intergenic | 45.0% | |
| GGTGAAACCTGTGAGATTAG+AGG | - | chr3_4:40584114-40584133 | Msa0500290:intron | 45.0% | |
| CCGAATTACATGCTGCCAAA+TGG | + | chr3_4:40584149-40584168 | None:intergenic | 45.0% | |
| TCGGAAGAAGAAGGACAATG+AGG | - | chr3_4:40584165-40584184 | Msa0500290:intron | 45.0% | |
| AGAAGAAGTCCCAGTCTGTT+TGG | - | chr3_4:40584200-40584219 | Msa0500290:intron | 45.0% | |
| GCTGTACCCGAAAAGATTCT+TGG | - | chr3_4:40584544-40584563 | Msa0500290:intron | 45.0% | |
| ATAAGTGGAATCGCCATCGA+CGG | + | chr3_4:40583199-40583218 | None:intergenic | 45.0% | |
| TGGCGATTCCACTTATCTCT+CGG | - | chr3_4:40583203-40583222 | Msa0500290:CDS | 45.0% | |
| CTCCGATCATGTCAATACCA+CGG | - | chr3_4:40583240-40583259 | Msa0500290:CDS | 45.0% | |
| !! | GACCGTGGTATTGACATGAT+CGG | + | chr3_4:40583245-40583264 | None:intergenic | 45.0% |
| TTGGAAATTCTGCTTCGGTC+CGG | - | chr3_4:40583421-40583440 | Msa0500290:intron | 45.0% | |
| TGACCTGGTAATCGCTGTTA+TGG | - | chr3_4:40583639-40583658 | Msa0500290:CDS | 45.0% | |
| AGCTTAAGTCCATCCATGTC+AGG | + | chr3_4:40583910-40583929 | None:intergenic | 45.0% | |
| TGAACTTACTTACGACCGGA+AGG | + | chr3_4:40583960-40583979 | None:intergenic | 45.0% | |
| GTGATGAAGGCAGTTTACCA+TGG | - | chr3_4:40584076-40584095 | Msa0500290:intron | 45.0% | |
| AGGTTTCACCAGAAACTCAG+AGG | + | chr3_4:40584104-40584123 | None:intergenic | 45.0% | |
| GGTGAAACCTGTGAGATTAG+AGG | - | chr3_4:40584114-40584133 | Msa0500290:intron | 45.0% | |
| CCGAATTACATGCTGCCAAA+TGG | + | chr3_4:40584149-40584168 | None:intergenic | 45.0% | |
| TCGGAAGAAGAAGGACAATG+AGG | - | chr3_4:40584165-40584184 | Msa0500290:intron | 45.0% | |
| AGAAGAAGTCCCAGTCTGTT+TGG | - | chr3_4:40584200-40584219 | Msa0500290:intron | 45.0% | |
| GCTGTACCCGAAAAGATTCT+TGG | - | chr3_4:40584544-40584563 | Msa0500290:intron | 45.0% | |
| !! | CGTGGTATTGACATGATCGG+AGG | + | chr3_4:40583242-40583261 | None:intergenic | 50.0% |
| AAAGCCAAGGCAGCAAATGC+CGG | + | chr3_4:40583443-40583462 | None:intergenic | 50.0% | |
| !! | CATTTGCTGCCTTGGCTTTG+AGG | - | chr3_4:40583444-40583463 | Msa0500290:intron | 50.0% |
| TAAGTCCATCCATGTCAGGC+AGG | + | chr3_4:40583906-40583925 | None:intergenic | 50.0% | |
| GGGACTTCTTCTGAGCTGAT+AGG | + | chr3_4:40584192-40584211 | None:intergenic | 50.0% | |
| CTCCACAGACCAAACAGACT+GGG | + | chr3_4:40584212-40584231 | None:intergenic | 50.0% | |
| TGTTTGTGTTGCGGACAGAG+TGG | + | chr3_4:40584290-40584309 | None:intergenic | 50.0% | |
| !! | CGTGGTATTGACATGATCGG+AGG | + | chr3_4:40583242-40583261 | None:intergenic | 50.0% |
| AAAGCCAAGGCAGCAAATGC+CGG | + | chr3_4:40583443-40583462 | None:intergenic | 50.0% | |
| !! | CATTTGCTGCCTTGGCTTTG+AGG | - | chr3_4:40583444-40583463 | Msa0500290:intron | 50.0% |
| TAAGTCCATCCATGTCAGGC+AGG | + | chr3_4:40583906-40583925 | None:intergenic | 50.0% | |
| GGGACTTCTTCTGAGCTGAT+AGG | + | chr3_4:40584192-40584211 | None:intergenic | 50.0% | |
| CTCCACAGACCAAACAGACT+GGG | + | chr3_4:40584212-40584231 | None:intergenic | 50.0% | |
| TGTTTGTGTTGCGGACAGAG+TGG | + | chr3_4:40584290-40584309 | None:intergenic | 50.0% | |
| !! | TTGCTGCCTTGGCTTTGAGG+TGG | - | chr3_4:40583447-40583466 | Msa0500290:intron | 55.0% |
| GGTGCACATCAGCGATTACC+AGG | + | chr3_4:40583885-40583904 | None:intergenic | 55.0% | |
| TGATGTGCACCTGCCTGACA+TGG | - | chr3_4:40583894-40583913 | Msa0500290:CDS | 55.0% | |
| GGAACTTGAGACGGACCTTC+CGG | - | chr3_4:40583942-40583961 | Msa0500290:CDS | 55.0% | |
| !! | CCAGAAACTCAGAGGCACCA+TGG | + | chr3_4:40584096-40584115 | None:intergenic | 55.0% |
| CCATGGTGCCTCTGAGTTTC+TGG | - | chr3_4:40584093-40584112 | Msa0500290:intron | 55.0% | |
| GTCCCAGTCTGTTTGGTCTG+TGG | - | chr3_4:40584207-40584226 | Msa0500290:intron | 55.0% | |
| GCTCCACAGACCAAACAGAC+TGG | + | chr3_4:40584213-40584232 | None:intergenic | 55.0% | |
| !! | TTGCTGCCTTGGCTTTGAGG+TGG | - | chr3_4:40583447-40583466 | Msa0500290:intron | 55.0% |
| GGTGCACATCAGCGATTACC+AGG | + | chr3_4:40583885-40583904 | None:intergenic | 55.0% | |
| TGATGTGCACCTGCCTGACA+TGG | - | chr3_4:40583894-40583913 | Msa0500290:CDS | 55.0% | |
| GGAACTTGAGACGGACCTTC+CGG | - | chr3_4:40583942-40583961 | Msa0500290:CDS | 55.0% | |
| !! | CCAGAAACTCAGAGGCACCA+TGG | + | chr3_4:40584096-40584115 | None:intergenic | 55.0% |
| CCATGGTGCCTCTGAGTTTC+TGG | - | chr3_4:40584093-40584112 | Msa0500290:intron | 55.0% | |
| GTCCCAGTCTGTTTGGTCTG+TGG | - | chr3_4:40584207-40584226 | Msa0500290:intron | 55.0% | |
| GCTCCACAGACCAAACAGAC+TGG | + | chr3_4:40584213-40584232 | None:intergenic | 55.0% | |
| ATGCGTGTTCTCGCCGTCGA+TGG | - | chr3_4:40583183-40583202 | Msa0500290:CDS | 60.0% | |
| GTGCACCTGCCTGACATGGA+TGG | - | chr3_4:40583898-40583917 | Msa0500290:CDS | 60.0% | |
| AGGACGTGGGAAGCCATCTC+CGG | - | chr3_4:40584596-40584615 | Msa0500290:CDS | 60.0% | |
| ATGCGTGTTCTCGCCGTCGA+TGG | - | chr3_4:40583183-40583202 | Msa0500290:CDS | 60.0% | |
| GTGCACCTGCCTGACATGGA+TGG | - | chr3_4:40583898-40583917 | Msa0500290:CDS | 60.0% | |
| AGGACGTGGGAAGCCATCTC+CGG | - | chr3_4:40584596-40584615 | Msa0500290:CDS | 60.0% | |
| ! | CGGTCCGGCATTTGCTGCCT+TGG | - | chr3_4:40583436-40583455 | Msa0500290:intron | 65.0% |
| GGACGTGGGAAGCCATCTCC+GGG | - | chr3_4:40584597-40584616 | Msa0500290:CDS | 65.0% | |
| ! | CGGTCCGGCATTTGCTGCCT+TGG | - | chr3_4:40583436-40583455 | Msa0500290:intron | 65.0% |
| GGACGTGGGAAGCCATCTCC+GGG | - | chr3_4:40584597-40584616 | Msa0500290:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 40583183 | 40584630 | 40583183 | ID=Msa0500290;Name=Msa0500290 |
| chr3_4 | mRNA | 40583183 | 40584630 | 40583183 | ID=Msa0500290-mRNA-1;Parent=Msa0500290;Name=Msa0500290-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.33|0|1|1|1|4|0|183 |
| chr3_4 | exon | 40584552 | 40584630 | 40584552 | ID=Msa0500290-mRNA-1:exon:8329;Parent=Msa0500290-mRNA-1 |
| chr3_4 | exon | 40583843 | 40583995 | 40583843 | ID=Msa0500290-mRNA-1:exon:8328;Parent=Msa0500290-mRNA-1 |
| chr3_4 | exon | 40583536 | 40583766 | 40583536 | ID=Msa0500290-mRNA-1:exon:8327;Parent=Msa0500290-mRNA-1 |
| chr3_4 | exon | 40583183 | 40583271 | 40583183 | ID=Msa0500290-mRNA-1:exon:8326;Parent=Msa0500290-mRNA-1 |
| chr3_4 | CDS | 40584552 | 40584630 | 40584552 | ID=Msa0500290-mRNA-1:cds;Parent=Msa0500290-mRNA-1 |
| chr3_4 | CDS | 40583843 | 40583995 | 40583843 | ID=Msa0500290-mRNA-1:cds;Parent=Msa0500290-mRNA-1 |
| chr3_4 | CDS | 40583536 | 40583766 | 40583536 | ID=Msa0500290-mRNA-1:cds;Parent=Msa0500290-mRNA-1 |
| chr3_4 | CDS | 40583183 | 40583271 | 40583183 | ID=Msa0500290-mRNA-1:cds;Parent=Msa0500290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
