AlfalfaGEDB | Msa0500370

M. sativa cultivar zhongmu-4 / Msa0500370

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0500370	XP_003603085.2	98.394	436	7	0	45	480	235	670	0.0	902

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0500370	sp\|Q93Y06\|Y5720_ARATH	52.550	451	184	12	46	468	218	666	3.10e-148	441

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0500370	A0A396J0U6	98.394	436	7	0	45	480	235	670	0.0	902

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0500370	MtrunA17_Chr3g0134221	98.394	436	7	0	45	480	235	670	0.0	902
Msa0500370	MtrunA17_Chr4g0053221	55.349	430	177	7	45	469	211	630	1.96e-163	476
Msa0500370	MtrunA17_Chr4g0037561	43.379	438	212	11	46	459	216	641	3.05e-98	310
Msa0500370	MtrunA17_Chr1g0209521	35.654	474	239	15	31	461	190	640	1.35e-73	244
Msa0500370	MtrunA17_Chr5g0423121	35.011	457	251	12	28	467	189	616	1.42e-67	228
Msa0500370	MtrunA17_Chr3g0128551	36.745	381	188	14	102	459	265	615	9.96e-66	223
Msa0500370	MtrunA17_Chr4g0062911	40.203	296	153	8	180	459	331	618	1.79e-59	206
Msa0500370	MtrunA17_Chr5g0428541	35.385	390	201	11	95	460	227	589	4.87e-59	204
Msa0500370	MtrunA17_Chr5g0432851	35.219	389	205	13	95	460	265	629	1.15e-58	204
Msa0500370	MtrunA17_Chr1g0179521	33.179	431	256	13	47	459	213	629	2.97e-58	203

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0500370	AT5G43020.1	56.984	451	169	11	46	476	221	666	1.77e-167	488
Msa0500370	AT5G67200.1	52.550	451	184	12	46	468	218	666	3.15e-149	441
Msa0500370	AT3G50230.1	47.391	460	183	13	46	468	220	657	4.19e-133	400
Msa0500370	AT3G50230.2	47.391	460	183	13	46	468	232	669	4.81e-133	400
Msa0500370	AT1G10850.1	42.350	451	188	14	46	459	216	631	5.29e-97	306
Msa0500370	AT1G60630.1	43.448	435	203	13	46	459	207	619	1.39e-96	305
Msa0500370	AT1G68400.1	35.032	471	243	16	28	459	191	637	6.56e-66	224
Msa0500370	AT2G26730.1	40.339	295	153	7	180	459	334	620	2.01e-63	218
Msa0500370	AT1G48480.1	31.263	467	275	14	24	459	192	643	6.19e-58	202
Msa0500370	AT2G36570.1	38.339	313	153	8	180	459	341	646	1.63e-57	202

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Find 152 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGTGAGATCTATCA+GGG	0.620843	3_4:+40665193	Msa0500370:CDS
AAAGAAACAGAGAAAGAAAA+AGG	0.218297	3_4:+40663158	Msa0500370:CDS
AAAGGTTCTGCGGAGCTATT+AGG	0.335429	3_4:+40663372	Msa0500370:CDS
AAATCCGACGTTTATGCATA+TGG	0.451140	3_4:+40665098	Msa0500370:CDS
AACAAAAGAATACTAAGACA+TGG	0.680879	3_4:-40665396	None:intergenic
AACCAGAGTGCAAAGGTTCA+TGG	0.382502	3_4:+40663024	Msa0500370:CDS
AACTTCCGGATCGAGTGTGA+TGG	0.602696	3_4:+40663188	Msa0500370:CDS
AAGCAGAGTTCTTCAATCCA+AGG	0.535265	3_4:+40660556	Msa0500370:CDS
AAGCATGAGGTCCAATGTAA+TGG	0.513431	3_4:-40664846	None:intergenic
AAGCTTCGAAATCAGGTCCT+AGG	0.523555	3_4:-40664959	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAATATAACTCAATGTCCA+GGG	-	chr3_4:40660691-40660710	None:intergenic	30.0%
ATGAATATAACTCAATGTCC+AGG	-	chr3_4:40660692-40660711	None:intergenic	30.0%
ATAGATATTGAGTTCTTCCA+TGG	+	chr3_4:40660772-40660791	Msa0500370:intron	30.0%
GCGTAATAGATATATAAGAG+AGG	+	chr3_4:40661576-40661595	Msa0500370:intron	30.0%
GTAAAAGGTTATACTTGGAT+TGG	-	chr3_4:40662003-40662022	None:intergenic	30.0%
GATGATTCACAAACTTCTTA+AGG	+	chr3_4:40662253-40662272	Msa0500370:intron	30.0%
TTGTTCGTACTTGAATTTGT+TGG	-	chr3_4:40662497-40662516	None:intergenic	30.0%
AACAAATTCAAGTACGAACA+AGG	+	chr3_4:40662496-40662515	Msa0500370:intron	30.0%
TGATACTTTGTATGAGTGTT+AGG	-	chr3_4:40662601-40662620	None:intergenic	30.0%
TAATCTCTCCACATAGATTA+GGG	-	chr3_4:40662939-40662958	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	40660527	40665803	40660527	ID=Msa0500370;Name=Msa0500370
chr3_4	mRNA	40660527	40665803	40660527	ID=Msa0500370-mRNA-1;Parent=Msa0500370;Name=Msa0500370-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0.5\|0.33\|0.66\|1\|1\|3\|397\|480
chr3_4	exon	40660527	40660658	40660527	ID=Msa0500370-mRNA-1:exon:8266;Parent=Msa0500370-mRNA-1
chr3_4	exon	40662916	40663642	40662916	ID=Msa0500370-mRNA-1:exon:8267;Parent=Msa0500370-mRNA-1
chr3_4	exon	40664823	40665803	40664823	ID=Msa0500370-mRNA-1:exon:8268;Parent=Msa0500370-mRNA-1
chr3_4	CDS	40660527	40660658	40660527	ID=Msa0500370-mRNA-1:cds;Parent=Msa0500370-mRNA-1
chr3_4	CDS	40662916	40663642	40662916	ID=Msa0500370-mRNA-1:cds;Parent=Msa0500370-mRNA-1
chr3_4	CDS	40664823	40665406	40664823	ID=Msa0500370-mRNA-1:cds;Parent=Msa0500370-mRNA-1
chr3_4	three_prime_UTR	40665407	40665803	40665407	ID=Msa0500370-mRNA-1:three_prime_utr;Parent=Msa0500370-mRNA-1

Gene Sequence

>Msa0500370

ATGTCATCATCACAATTCTGTTTGGTTCAAAGCAGAGTTCTTCAATCCAAGGAGTTTAGAAAAGATGGGGTGACATCTTTTGTTTCTTCTAACAATTCCAGCAATCGTGGTTCAAAGGAAAGCTTTTCATTCCCTTCTTCTTTTGCTTTAAACCCTAATCTATGTGGAGAGATTATCCGGAGAGAATGTCGTCCATCTACGCCGTTTTTTGCTCCGGCAACGCCTCCGACGGTTGGACTTAACCAGAGTGCAAAGGTTCATGGATTAATCCGGCAGCCGTATGCAAAGAAAAATGATCGTAGAGCGGTGATAATCGGATTTTCAACTGGAATCGTTTTTCTGTTACTTTCTCTAGCGTGTTTCGCGGTTGTGATAAAGAAACAGAGAAAGAAAAAGGGTAAAGGAACTTCCGGATCGAGTGTGATGGCTTCCGACACGGCGGCGGCGACGGTGGAAGAAGCGGTGGTGATGCAAATGGAGCAAGAGAGAGAGTTAGAACAAAAAGTAAAAAGAGCGCAAGTTGCAAAGAGTGGGAGTTTAATATTCTGTGCGGGTGAGTCGCAGGTGTATACGCTGGACCAATTGATGAAAGGTTCTGCGGAGCTATTAGGAAGAGGGTGTTTAGGAACAACTTATAAAGCGGTGCTTGATAACCGTTTGATTGTAACAGTGAAGCGTCTTGATTGTGGGAAAATGGGTGGGCATGTTAGTAAGGATGTTTTTGAGCGTCACATGGAATCAGTTGGTGGTCTTCGTCATCCGAATTTAGTTGCGGTTAGGGCTTATTTTCAGGCTAATCAAGAGAGGCTTATTATCTATGATTATCAGCCTAATGGAAGTCTCTTCTCCCTCATACACGGTTCCAGGTCAAGTAGGGCAAGGCCATTACATTGGACCTCATGCTTGAAAATAGCAGAGGACGTAGCACAAGGGCTTTCCTACATCCACCAGGCATGGAGACTGGTCCATGGAAATCTCAAGTCGACCAATGTTCTCCTAGGACCTGATTTCGAAGCTTGCGTCACAGACTACTGCCTGTCTGTGTTGACCAACCCATCTACCTTTGACGAGGTTGGTGATTCTGCACCTTATAGAGCCCCGGAGACTCGCAATCCAAATCATCAGCCAACCACCAAATCCGACGTTTATGCATATGGTATTTTGTTACTAGAGCTTTTAACTGGGAAATATGCTTCTGAGCTTCCATTCATGGTTCCTGGTGATATGTCAAAATGGGTGAGATCTATCAGGGATGACAATGGGAGCGAAGATAACAGAATGGATATGCTTCTTCAGGTGGCTACAACTTGTAGCTTGATCTCTCCAGAGCAGAGGCCCACAATGTGGCAGGTCTTGAAGATGTTACAAGAAATCAAAGAGATTGTACTCTTGGAGGATAGTGAGTTGGACCTACGTAGTAGTAATGCCATCGCCATGTCTTAG

Protein sequence

>Msa0500370

MSSSQFCLVQSRVLQSKEFRKDGVTSFVSSNNSSNRGSKESFSFPSSFALNPNLCGEIIRRECRPSTPFFAPATPPTVGLNQSAKVHGLIRQPYAKKNDRRAVIIGFSTGIVFLLLSLACFAVVIKKQRKKKGKGTSGSSVMASDTAAATVEEAVVMQMEQERELEQKVKRAQVAKSGSLIFCAGESQVYTLDQLMKGSAELLGRGCLGTTYKAVLDNRLIVTVKRLDCGKMGGHVSKDVFERHMESVGGLRHPNLVAVRAYFQANQERLIIYDYQPNGSLFSLIHGSRSSRARPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLKSTNVLLGPDFEACVTDYCLSVLTNPSTFDEVGDSAPYRAPETRNPNHQPTTKSDVYAYGILLLELLTGKYASELPFMVPGDMSKWVRSIRDDNGSEDNRMDMLLQVATTCSLISPEQRPTMWQVLKMLQEIKEIVLLEDSELDLRSSNAIAMS*