AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0501490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501490 MtrunA17_Chr3g0099131 69.388 441 102 6 23 434 39 475 8.59e-177 504
Msa0501490 MtrunA17_Chr3g0080861 57.857 140 52 1 1 133 12 151 2.18e-48 172
Msa0501490 MtrunA17_Chr8g0354661 71.698 106 30 0 28 133 46 151 1.32e-46 168
Msa0501490 MtrunA17_Chr2g0322521 73.585 106 28 0 28 133 38 143 7.20e-44 158
Msa0501490 MtrunA17_Chr3g0099141 78.652 89 13 1 21 103 36 124 1.22e-43 149
Msa0501490 MtrunA17_Chr1g0154031 61.321 106 41 0 28 133 85 190 2.78e-41 151
Msa0501490 MtrunA17_Chr1g0192411 56.780 118 45 1 19 130 6 123 1.21e-37 141
Msa0501490 MtrunA17_Chr1g0203411 51.240 121 54 1 27 142 20 140 5.43e-37 137
Msa0501490 MtrunA17_Chr5g0410961 52.294 109 46 1 20 122 7 115 3.53e-36 135
Msa0501490 MtrunA17_Chr2g0323411 54.128 109 44 1 20 122 7 115 9.31e-36 134
Msa0501490 MtrunA17_Chr1g0193371 58.586 99 41 0 27 125 20 118 1.04e-35 135
Msa0501490 MtrunA17_Chr2g0281071 57.292 96 41 0 27 122 21 116 2.18e-34 131
Msa0501490 MtrunA17_Chr4g0048511 55.340 103 45 1 26 127 20 122 3.62e-34 130
Msa0501490 MtrunA17_Chr8g0385321 50.394 127 50 2 26 152 19 132 5.65e-34 129
Msa0501490 MtrunA17_Chr4g0039971 51.786 112 48 1 20 125 8 119 8.27e-34 129
Msa0501490 MtrunA17_Chr5g0395281 52.252 111 47 1 21 125 8 118 1.32e-33 128
Msa0501490 MtrunA17_Chr1g0193801 57.576 99 42 0 27 125 20 118 2.11e-33 129
Msa0501490 MtrunA17_Chr5g0435101 50.467 107 47 1 20 120 6 112 3.77e-33 124
Msa0501490 MtrunA17_Chr7g0270891 54.545 99 45 0 27 125 20 118 7.23e-33 127
Msa0501490 MtrunA17_Chr2g0328771 53.061 98 46 0 27 124 28 125 7.81e-33 126
Msa0501490 MtrunA17_Chr7g0228231 51.000 100 49 0 27 126 22 121 8.25e-33 123
Msa0501490 MtrunA17_Chr6g0453211 51.923 104 44 1 20 117 7 110 1.11e-32 125
Msa0501490 MtrunA17_Chr3g0115821 49.107 112 51 1 20 125 7 118 1.46e-32 126
Msa0501490 MtrunA17_Chr4g0060721 50.459 109 48 1 20 122 8 116 1.57e-32 125
Msa0501490 MtrunA17_Chr7g0217741 50.459 109 48 1 20 122 7 115 2.26e-32 124
Msa0501490 MtrunA17_Chr7g0217221 47.321 112 53 1 20 125 7 118 3.71e-32 123
Msa0501490 MtrunA17_Chr4g0070641 53.922 102 43 1 28 125 21 122 4.03e-32 120
Msa0501490 MtrunA17_Chr3g0131121 48.780 123 62 1 26 148 19 140 4.83e-32 123
Msa0501490 MtrunA17_Chr6g0452271 36.239 218 105 6 20 206 7 221 5.88e-32 124
Msa0501490 MtrunA17_Chr4g0058631 43.165 139 69 3 27 155 20 158 6.69e-32 124
Msa0501490 MtrunA17_Chr4g0070611 53.922 102 43 1 28 125 21 122 7.61e-32 123
Msa0501490 MtrunA17_Chr7g0254411 49.541 109 49 1 20 122 7 115 7.94e-32 124
Msa0501490 MtrunA17_Chr6g0453471 50.459 109 48 1 20 122 7 115 1.07e-31 124
Msa0501490 MtrunA17_Chr1g0209661 42.742 124 65 1 8 125 10 133 1.17e-31 122
Msa0501490 MtrunA17_Chr4g0032401 53.061 98 46 0 27 124 25 122 1.62e-31 123
Msa0501490 MtrunA17_Chr1g0194301 50.000 100 50 0 26 125 40 139 1.62e-31 121
Msa0501490 MtrunA17_Chr1g0186061 48.000 125 56 2 6 124 4 125 2.04e-31 120
Msa0501490 MtrunA17_Chr5g0440781 50.926 108 52 1 26 132 19 126 2.11e-31 119
Msa0501490 MtrunA17_Chr2g0323351 51.402 107 46 1 20 120 7 113 2.88e-31 120
Msa0501490 MtrunA17_Chr6g0450101 50.505 99 49 0 27 125 22 120 3.25e-31 119
Msa0501490 MtrunA17_Chr7g0271241 58.889 90 37 0 27 116 20 109 3.42e-31 123
Msa0501490 MtrunA17_Chr4g0037141 53.608 97 45 0 26 122 19 115 3.73e-31 120
Msa0501490 MtrunA17_Chr8g0342541 54.167 96 44 0 27 122 20 115 3.99e-31 122
Msa0501490 MtrunA17_Chr8g0387421 52.525 99 47 0 27 125 20 118 4.08e-31 121
Msa0501490 MtrunA17_Chr4g0042671 48.696 115 52 2 20 127 7 121 4.47e-31 123
Msa0501490 MtrunA17_Chr1g0194291 45.082 122 66 1 5 125 6 127 4.48e-31 120
Msa0501490 MtrunA17_Chr2g0330041 39.130 184 87 6 27 205 20 183 5.59e-31 122
Msa0501490 MtrunA17_Chr5g0440761 50.926 108 52 1 26 132 19 126 6.74e-31 119
Msa0501490 MtrunA17_Chr8g0342521 42.384 151 79 3 27 175 20 164 7.58e-31 121
Msa0501490 MtrunA17_Chr5g0441141 50.926 108 52 1 26 132 19 126 8.17e-31 119
Msa0501490 MtrunA17_Chr1g0211161 50.980 102 49 1 27 127 21 122 9.05e-31 118
Msa0501490 MtrunA17_Chr3g0117091 50.980 102 49 1 27 127 20 121 1.06e-30 121
Msa0501490 MtrunA17_Chr3g0092401 46.429 112 54 1 20 125 8 119 1.25e-30 120
Msa0501490 MtrunA17_Chr1g0151941 39.286 140 74 3 20 148 7 146 1.92e-30 118
Msa0501490 MtrunA17_Chr8g0346561 47.863 117 57 2 27 140 20 135 2.36e-30 119
Msa0501490 MtrunA17_Chr1g0180391 50.000 112 54 1 25 134 25 136 2.65e-30 117
Msa0501490 MtrunA17_Chr3g0088461 51.020 98 48 0 27 124 30 127 2.85e-30 119
Msa0501490 MtrunA17_Chr1g0168661 53.061 98 46 0 27 124 29 126 3.57e-30 117
Msa0501490 MtrunA17_Chr2g0327351 52.381 105 43 2 20 117 7 111 3.67e-30 119
Msa0501490 MtrunA17_Chr4g0022931 51.042 96 47 0 27 122 21 116 4.12e-30 117
Msa0501490 MtrunA17_Chr2g0309911 50.000 102 50 1 27 127 19 120 5.97e-30 118
Msa0501490 MtrunA17_Chr1g0152011 50.000 110 48 2 20 122 7 116 7.04e-30 118
Msa0501490 MtrunA17_Chr1g0187761 47.321 112 53 1 20 125 7 118 7.48e-30 116
Msa0501490 MtrunA17_Chr1g0167661 47.706 109 51 1 20 122 7 115 8.03e-30 116
Msa0501490 MtrunA17_Chr5g0397231 54.945 91 41 0 27 117 20 110 8.29e-30 118
Msa0501490 MtrunA17_Chr1g0167691 46.789 109 52 1 20 122 7 115 9.66e-30 116
Msa0501490 MtrunA17_Chr7g0264641 49.091 110 49 2 20 122 7 116 1.19e-29 116
Msa0501490 MtrunA17_Chr5g0417821 52.941 102 47 1 27 127 15 116 1.23e-29 116
Msa0501490 MtrunA17_Chr4g0028311 48.182 110 50 2 20 122 7 116 1.35e-29 117
Msa0501490 MtrunA17_Chr8g0349261 51.546 97 46 1 27 122 21 117 1.79e-29 116
Msa0501490 MtrunA17_Chr4g0068061 49.533 107 48 1 20 120 7 113 1.96e-29 117
Msa0501490 MtrunA17_Chr5g0400821 49.091 110 49 2 20 122 7 116 2.32e-29 116
Msa0501490 MtrunA17_Chr3g0103281 47.706 109 51 1 20 122 7 115 2.53e-29 116
Msa0501490 MtrunA17_Chr4g0022901 50.000 96 48 0 27 122 21 116 2.67e-29 115
Msa0501490 MtrunA17_Chr7g0275911 50.538 93 46 0 27 119 20 112 3.65e-29 114
Msa0501490 MtrunA17_Chr7g0274581 43.750 112 57 1 20 125 7 118 3.75e-29 113
Msa0501490 MtrunA17_Chr3g0110351 46.429 112 54 1 20 125 7 118 5.33e-29 115
Msa0501490 MtrunA17_Chr5g0434571 46.429 112 54 1 20 125 43 154 8.48e-29 115
Msa0501490 MtrunA17_Chr4g0044421 50.515 97 48 0 26 122 19 115 9.43e-29 111
Msa0501490 MtrunA17_Chr4g0022911 48.958 96 49 0 27 122 21 116 9.69e-29 114
Msa0501490 MtrunA17_Chr8g0343831 51.485 101 48 1 26 125 15 115 1.03e-28 113
Msa0501490 MtrunA17_Chr5g0441131 48.148 108 55 1 26 132 16 123 1.47e-28 110
Msa0501490 MtrunA17_Chr4g0022881 46.018 113 61 0 8 120 1 113 1.97e-28 112
Msa0501490 MtrunA17_Chr4g0022891 46.018 113 61 0 8 120 1 113 2.07e-28 112
Msa0501490 MtrunA17_Chr7g0261281 44.628 121 57 2 20 134 7 123 3.45e-28 112
Msa0501490 MtrunA17_Chr3g0135311 47.273 110 51 2 20 122 7 116 3.76e-28 114
Msa0501490 MtrunA17_Chr8g0342481 51.546 97 46 1 27 122 20 116 4.29e-28 114
Msa0501490 MtrunA17_Chr4g0057031 45.872 109 53 1 20 122 7 115 7.73e-28 111
Msa0501490 MtrunA17_Chr1g0203441 48.571 105 54 0 27 131 21 125 1.13e-27 110
Msa0501490 MtrunA17_Chr4g0013361 40.876 137 64 3 9 144 6 126 1.22e-27 111
Msa0501490 MtrunA17_Chr4g0055981 40.278 144 79 1 4 147 40 176 1.56e-27 109
Msa0501490 MtrunA17_Chr3g0121241 46.226 106 51 1 20 119 37 142 1.56e-27 111
Msa0501490 MtrunA17_Chr4g0054391 49.038 104 46 2 20 116 7 110 3.29e-27 110
Msa0501490 MtrunA17_Chr8g0334881 47.475 99 51 1 27 124 18 116 7.86e-27 109
Msa0501490 MtrunA17_Chr2g0311221 46.847 111 53 1 13 117 2 112 8.38e-27 109
Msa0501490 MtrunA17_Chr7g0228891 45.872 109 53 1 20 122 7 115 1.50e-26 107
Msa0501490 MtrunA17_Chr2g0327821 37.589 141 86 1 26 164 13 153 4.82e-26 105
Msa0501490 MtrunA17_Chr4g0072751 48.571 105 47 2 20 117 7 111 5.00e-26 108
Msa0501490 MtrunA17_Chr1g0194951 50.538 93 46 0 27 119 20 112 1.42e-25 107
Msa0501490 MtrunA17_Chr2g0293911 50.000 98 49 0 28 125 33 130 1.68e-25 106
Msa0501490 MtrunA17_Chr7g0240821 36.429 140 85 1 26 165 8 143 2.28e-25 103
Msa0501490 MtrunA17_Chr4g0068921 45.946 111 54 1 21 125 20 130 2.33e-25 102
Msa0501490 MtrunA17_Chr6g0487491 40.984 122 57 3 20 126 7 128 2.66e-25 104
Msa0501490 MtrunA17_Chr7g0247131 56.757 74 32 0 51 124 10 83 7.65e-25 103
Msa0501490 MtrunA17_Chr6g0470971 48.454 97 50 0 27 123 22 118 9.83e-25 103
Msa0501490 MtrunA17_Chr7g0269831 50.943 106 46 1 20 119 7 112 7.04e-24 102
Msa0501490 MtrunA17_Chr5g0434831 43.750 96 54 0 27 122 15 110 8.75e-24 98.2
Msa0501490 MtrunA17_Chr8g0360111 45.631 103 56 0 17 119 23 125 1.80e-23 99.0
Msa0501490 MtrunA17_Chr5g0395221 56.522 69 30 0 27 95 20 88 9.65e-23 92.0
Msa0501490 MtrunA17_Chr5g0434931 41.667 96 56 0 27 122 43 138 1.58e-22 97.1
Msa0501490 MtrunA17_Chr4g0030881 40.187 107 57 1 26 125 14 120 3.99e-22 95.1
Msa0501490 MtrunA17_Chr4g0008551 44.037 109 55 2 27 135 44 146 5.29e-22 96.7
Msa0501490 MtrunA17_Chr5g0425591 53.947 76 34 1 26 100 16 91 1.17e-21 89.0
Msa0501490 MtrunA17_Chr7g0220341 44.211 95 51 1 27 119 33 127 1.51e-21 94.0
Msa0501490 MtrunA17_Chr5g0434911 41.667 96 56 0 27 122 29 124 1.88e-21 93.6
Msa0501490 MtrunA17_Chr8g0342511 55.882 68 30 0 27 94 20 87 1.89e-21 88.6
Msa0501490 MtrunA17_Chr2g0294811 47.253 91 39 2 20 104 7 94 2.76e-21 89.0
Msa0501490 MtrunA17_Chr2g0323321 42.708 96 49 1 20 109 6 101 3.49e-21 88.6
Msa0501490 MtrunA17_Chr6g0454921 44.681 94 51 1 27 120 21 113 5.85e-21 90.9
Msa0501490 MtrunA17_Chr8g0342531 45.977 87 41 1 20 100 7 93 6.26e-21 89.4
Msa0501490 MtrunA17_Chr5g0434841 38.261 115 66 1 8 122 14 123 6.49e-21 92.8
Msa0501490 MtrunA17_Chr7g0228991 43.011 93 53 0 27 119 37 129 1.24e-20 91.3
Msa0501490 MtrunA17_Chr6g0453751 48.485 99 36 3 18 101 13 111 4.53e-20 85.9
Msa0501490 MtrunA17_Chr8g0342461 50.704 71 34 1 27 96 20 90 9.06e-20 85.5
Msa0501490 MtrunA17_Chr4g0042611 46.341 82 38 1 20 95 7 88 1.08e-19 83.6
Msa0501490 MtrunA17_Chr4g0053431 45.745 94 50 1 27 120 11 103 1.39e-19 88.2
Msa0501490 MtrunA17_Chr5g0401731 43.750 96 53 1 27 122 21 115 1.49e-19 89.4
Msa0501490 MtrunA17_Chr8g0342471 50.704 71 34 1 27 96 20 90 2.12e-19 84.3
Msa0501490 MtrunA17_Chr3g0133601 42.000 100 57 1 27 126 43 141 2.91e-19 86.3
Msa0501490 MtrunA17_Chr6g0460661 41.000 100 58 1 28 127 23 121 2.08e-18 82.0
Msa0501490 MtrunA17_Chr5g0429661 42.268 97 54 2 27 123 128 222 5.16e-18 85.1
Msa0501490 MtrunA17_Chr1g0157731 38.144 97 59 1 26 122 96 191 6.51e-18 86.7
Msa0501490 MtrunA17_Chr3g0139671 33.588 131 71 3 26 145 90 215 1.07e-17 85.9
Msa0501490 MtrunA17_Chr3g0117511 38.679 106 62 2 27 130 189 293 1.12e-17 84.7
Msa0501490 MtrunA17_Chr7g0238651 39.604 101 59 2 27 125 13 113 1.54e-17 83.6
Msa0501490 MtrunA17_Chr5g0417621 31.892 185 105 5 11 175 119 302 3.80e-17 83.2
Msa0501490 MtrunA17_Chr5g0437321 40.741 108 63 1 12 119 10 116 6.58e-17 80.9
Msa0501490 MtrunA17_Chr4g0058991 40.206 97 56 2 27 123 215 309 7.61e-17 82.4
Msa0501490 MtrunA17_Chr4g0042501 36.975 119 69 3 12 125 91 208 1.65e-16 81.3
Msa0501490 MtrunA17_Chr7g0238631 38.144 97 59 1 26 122 118 213 4.02e-16 80.5
Msa0501490 MtrunA17_Chr7g0228401 41.860 86 49 1 32 117 290 374 7.99e-16 79.3
Msa0501490 MtrunA17_Chr1g0193901 54.545 77 34 1 26 101 19 95 1.09e-15 72.8
Msa0501490 MtrunA17_Chr1g0193891 54.545 77 34 1 26 101 19 95 1.09e-15 72.8
Msa0501490 MtrunA17_Chr1g0193871 54.545 77 34 1 26 101 19 95 1.09e-15 72.8
Msa0501490 MtrunA17_Chr1g0193881 54.545 77 34 1 26 101 19 95 1.09e-15 72.8
Msa0501490 MtrunA17_Chr7g0229101 46.377 69 37 0 52 120 5 73 1.64e-15 75.1
Msa0501490 MtrunA17_Chr5g0434901 45.588 68 37 0 53 120 7 74 1.83e-15 72.4
Msa0501490 MtrunA17_Chr7g0254261 35.659 129 77 2 28 156 96 218 1.88e-15 77.4
Msa0501490 MtrunA17_Chr5g0397841 39.560 91 54 1 26 116 115 204 1.88e-15 78.2
Msa0501490 MtrunA17_Chr6g0460671 39.000 100 60 1 28 127 106 204 1.98e-15 77.4
Msa0501490 MtrunA17_Chr6g0480581 34.615 104 67 1 28 131 11 113 4.06e-15 74.7
Msa0501490 MtrunA17_Chr7g0228531 39.175 97 56 3 28 124 227 320 5.16e-15 76.6
Msa0501490 MtrunA17_Chr7g0229131 44.928 69 38 0 52 120 5 73 1.53e-14 71.6
Msa0501490 MtrunA17_Chr1g0177901 43.023 86 45 2 32 117 8 89 1.11e-13 70.1
Msa0501490 MtrunA17_Chr3g0093811 41.333 75 44 0 51 125 14 88 1.20e-13 70.9
Msa0501490 MtrunA17_Chr3g0125801 34.167 120 77 2 7 125 1 119 2.78e-13 70.1
Msa0501490 MtrunA17_Chr7g0233061 44.444 63 35 0 55 117 211 273 5.98e-13 69.7
Msa0501490 MtrunA17_Chr7g0228481 38.889 90 53 2 28 117 227 314 1.46e-12 68.9
Msa0501490 MtrunA17_Chr5g0416341 32.323 99 66 1 26 124 31 128 1.65e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501490 AT5G06100.1 64.444 135 38 2 9 133 12 146 6.88e-51 178
Msa0501490 AT3G11440.2 74.528 106 27 0 28 133 50 155 1.57e-50 177
Msa0501490 AT5G06100.5 64.444 135 38 2 9 133 12 146 4.99e-50 177
Msa0501490 AT5G06100.2 64.444 135 38 2 9 133 12 146 4.99e-50 177
Msa0501490 AT5G06100.3 64.444 135 38 2 9 133 12 146 4.99e-50 177
Msa0501490 AT5G06100.4 64.444 135 38 2 9 133 12 146 4.99e-50 177
Msa0501490 AT3G11440.3 74.528 106 27 0 28 133 50 155 1.03e-49 177
Msa0501490 AT3G11440.4 74.528 106 27 0 28 133 50 155 1.03e-49 177
Msa0501490 AT3G11440.1 74.528 106 27 0 28 133 50 155 1.03e-49 177
Msa0501490 AT2G32460.2 72.642 106 29 0 28 133 15 120 5.99e-49 174
Msa0501490 AT2G32460.1 72.642 106 29 0 28 133 27 132 6.11e-49 174
Msa0501490 AT4G26930.1 52.980 151 57 2 7 143 1 151 1.43e-46 165
Msa0501490 AT2G26960.1 57.895 133 46 1 11 133 2 134 3.62e-46 165
Msa0501490 AT5G55020.1 69.903 103 31 0 28 130 35 137 8.98e-46 166
Msa0501490 AT5G26660.1 47.794 136 64 2 27 155 20 155 8.02e-36 135
Msa0501490 AT5G07700.1 41.530 183 82 6 20 195 7 171 6.63e-35 132
Msa0501490 AT5G07700.2 41.530 183 82 6 20 195 7 171 6.63e-35 132
Msa0501490 AT4G28110.1 51.304 115 49 2 20 127 7 121 1.11e-34 130
Msa0501490 AT1G57560.2 56.863 102 43 1 27 127 20 121 2.41e-34 129
Msa0501490 AT1G22640.1 51.261 119 47 1 2 120 6 113 2.55e-34 129
Msa0501490 AT1G57560.1 56.863 102 43 1 27 127 20 121 3.11e-34 130
Msa0501490 AT4G21440.1 51.304 115 49 2 20 127 7 121 3.43e-34 131
Msa0501490 AT5G61420.2 33.740 246 133 6 2 228 6 240 6.42e-34 130
Msa0501490 AT3G61250.1 44.203 138 62 2 20 142 7 144 6.68e-34 129
Msa0501490 AT4G05100.1 56.250 96 42 0 27 122 21 116 7.08e-34 129
Msa0501490 AT5G07690.1 47.059 119 52 1 2 120 6 113 7.78e-34 129
Msa0501490 AT4G01680.3 56.122 98 43 0 27 124 20 117 2.04e-33 126
Msa0501490 AT5G15310.4 50.459 109 48 1 20 122 7 115 2.79e-33 125
Msa0501490 AT3G01140.2 51.376 109 47 1 20 122 7 115 3.30e-33 128
Msa0501490 AT1G09540.1 57.576 99 42 0 27 125 20 118 3.88e-33 128
Msa0501490 AT1G35515.1 49.580 119 49 1 2 120 6 113 4.66e-33 124
Msa0501490 AT4G01680.1 56.122 98 43 0 27 124 20 117 7.32e-33 127
Msa0501490 AT3G02940.2 50.000 112 50 1 20 125 7 118 7.37e-33 126
Msa0501490 AT5G15310.1 50.459 109 48 1 20 122 7 115 7.72e-33 127
Msa0501490 AT5G15310.2 50.459 109 48 1 20 122 7 115 9.63e-33 126
Msa0501490 AT5G54230.1 37.561 205 104 5 27 223 20 208 1.10e-32 126
Msa0501490 AT5G16770.4 50.000 112 50 1 20 125 7 118 1.10e-32 126
Msa0501490 AT5G16770.3 50.000 112 50 1 20 125 7 118 1.10e-32 126
Msa0501490 AT3G02940.1 50.000 112 50 1 20 125 7 118 1.17e-32 126
Msa0501490 AT3G02940.3 50.000 112 50 1 20 125 7 118 1.17e-32 126
Msa0501490 AT3G01140.1 51.376 109 47 1 20 122 50 158 1.23e-32 127
Msa0501490 AT5G16770.1 50.000 112 50 1 20 125 7 118 1.37e-32 126
Msa0501490 AT5G16770.2 50.000 112 50 1 20 125 7 118 1.37e-32 126
Msa0501490 AT3G28910.1 51.376 109 47 1 20 122 7 115 1.59e-32 125
Msa0501490 AT2G16720.1 56.842 95 41 0 26 120 19 113 2.55e-32 124
Msa0501490 AT1G08810.1 50.459 109 48 1 20 122 7 115 3.31e-32 124
Msa0501490 AT5G60890.1 46.377 138 64 3 20 150 7 141 3.54e-32 124
Msa0501490 AT1G74650.1 49.541 109 49 1 20 122 7 115 4.92e-32 124
Msa0501490 AT3G47600.1 48.214 112 52 1 20 125 7 118 6.19e-32 124
Msa0501490 AT4G09460.1 54.737 95 43 0 26 120 19 113 6.22e-32 122
Msa0501490 AT4G34990.1 53.398 103 47 1 26 127 19 121 9.13e-32 122
Msa0501490 AT5G12870.1 51.515 99 48 0 27 125 26 124 9.84e-32 122
Msa0501490 AT1G74080.1 47.899 119 51 1 2 120 6 113 1.27e-31 123
Msa0501490 AT3G30210.1 54.082 98 45 0 27 124 35 132 1.91e-31 121
Msa0501490 AT5G62470.2 48.214 112 52 1 20 125 7 118 2.35e-31 123
Msa0501490 AT1G18570.1 56.250 96 42 0 27 122 21 116 2.60e-31 123
Msa0501490 AT5G65230.1 52.475 101 48 0 25 125 18 118 2.90e-31 122
Msa0501490 AT4G38620.1 53.608 97 45 0 26 122 19 115 4.58e-31 120
Msa0501490 AT5G14750.1 42.857 133 67 2 27 150 24 156 4.85e-31 118
Msa0501490 AT1G63910.1 54.545 99 45 0 27 125 20 118 5.42e-31 122
Msa0501490 AT3G27810.1 48.485 99 51 0 27 125 28 126 6.00e-31 119
Msa0501490 AT5G10280.1 50.450 111 49 1 21 125 8 118 6.55e-31 121
Msa0501490 AT1G34670.1 50.000 112 50 1 20 125 7 118 9.25e-31 122
Msa0501490 AT3G13890.2 51.042 96 47 0 27 122 20 115 1.06e-30 121
Msa0501490 AT3G28470.1 50.962 104 45 1 20 117 7 110 1.15e-30 120
Msa0501490 AT3G24310.1 54.082 98 45 0 27 124 26 123 1.37e-30 119
Msa0501490 AT3G12720.1 50.980 102 49 1 27 127 30 131 2.51e-30 119
Msa0501490 AT5G57620.1 48.718 117 49 3 20 125 7 123 3.62e-30 119
Msa0501490 AT5G40350.1 47.619 105 49 1 22 120 14 118 3.71e-30 116
Msa0501490 AT5G40330.1 47.000 100 53 0 27 126 20 119 4.48e-30 116
Msa0501490 AT3G27920.1 51.613 93 45 0 27 119 22 114 6.73e-30 116
Msa0501490 AT3G01530.1 50.000 94 47 0 27 120 33 126 7.50e-30 115
Msa0501490 AT5G62470.1 48.214 112 51 2 20 125 7 117 7.77e-30 119
Msa0501490 AT5G35550.1 52.632 95 45 0 28 122 23 117 8.52e-30 116
Msa0501490 AT1G16490.1 37.989 179 100 4 13 182 2 178 8.99e-30 117
Msa0501490 AT1G48000.1 51.064 94 46 0 27 120 40 133 1.01e-29 116
Msa0501490 AT4G01680.2 50.000 110 43 1 27 124 20 129 1.24e-29 118
Msa0501490 AT4G17785.1 51.485 101 49 0 25 125 19 119 1.34e-29 118
Msa0501490 AT5G52600.1 48.571 105 51 1 27 128 20 124 1.46e-29 114
Msa0501490 AT4G17785.2 51.485 101 49 0 25 125 19 119 1.68e-29 118
Msa0501490 AT1G68320.1 47.475 99 52 0 27 125 27 125 1.82e-29 116
Msa0501490 AT5G65790.1 50.000 110 48 2 20 122 7 116 2.30e-29 118
Msa0501490 AT4G22680.1 42.029 138 67 3 20 144 7 144 2.46e-29 115
Msa0501490 AT1G79180.1 41.135 141 73 2 13 147 2 138 2.55e-29 116
Msa0501490 AT4G13480.1 52.041 98 47 0 27 124 14 111 3.01e-29 115
Msa0501490 AT2G26950.1 48.598 107 55 0 27 133 24 130 3.73e-29 117
Msa0501490 AT3G08500.1 51.546 97 47 0 28 124 39 135 5.12e-29 116
Msa0501490 AT3G13540.1 48.039 102 52 1 27 127 31 132 5.26e-29 114
Msa0501490 AT3G49690.1 48.739 119 50 3 20 127 7 125 6.34e-29 115
Msa0501490 AT2G47190.1 45.455 99 54 0 26 124 27 125 7.13e-29 114
Msa0501490 AT1G56160.1 45.690 116 57 1 13 122 2 117 9.42e-29 115
Msa0501490 AT4G37780.1 47.414 116 52 3 20 126 7 122 1.38e-28 114
Msa0501490 AT5G62320.1 46.491 114 48 2 20 120 8 121 1.90e-28 112
Msa0501490 AT5G56110.1 46.789 109 52 1 20 122 7 115 1.90e-28 114
Msa0501490 AT5G23000.1 47.273 110 51 2 20 122 7 116 2.85e-28 114
Msa0501490 AT1G66230.1 45.536 112 55 1 20 125 7 118 2.86e-28 113
Msa0501490 AT1G25340.1 44.444 108 59 1 27 134 26 132 4.40e-28 112
Msa0501490 AT3G23250.1 44.954 109 54 1 20 122 7 115 6.46e-28 112
Msa0501490 AT3G13890.1 46.667 105 47 1 27 122 20 124 6.93e-28 114
Msa0501490 AT2G36890.1 48.182 110 50 2 20 122 7 116 1.06e-27 112
Msa0501490 AT2G36890.2 45.902 122 57 3 10 122 36 157 1.31e-27 112
Msa0501490 AT3G60460.1 48.421 95 48 1 27 120 19 113 2.69e-27 110
Msa0501490 AT2G31180.1 39.189 148 87 2 27 171 20 167 2.93e-27 109
Msa0501490 AT5G59780.3 42.241 116 59 1 26 141 15 122 2.96e-27 109
Msa0501490 AT2G47460.1 47.170 106 50 1 20 119 7 112 3.07e-27 112
Msa0501490 AT4G12350.1 45.872 109 53 1 20 122 7 115 4.12e-27 110
Msa0501490 AT1G06180.1 46.789 109 52 1 20 122 7 115 4.85e-27 108
Msa0501490 AT1G74430.1 41.803 122 64 2 27 147 20 135 5.52e-27 109
Msa0501490 AT5G26660.2 47.748 111 51 2 52 155 14 124 6.71e-27 110
Msa0501490 AT3G46130.1 41.379 116 60 1 26 141 16 123 7.50e-27 108
Msa0501490 AT3G62610.1 46.226 106 51 1 20 119 7 112 2.53e-26 109
Msa0501490 AT3G12820.1 45.872 109 53 1 20 122 9 117 3.74e-26 106
Msa0501490 AT5G49330.1 41.803 122 65 1 20 135 7 128 4.96e-26 108
Msa0501490 AT5G16600.1 44.643 112 56 1 20 125 7 118 6.55e-26 107
Msa0501490 AT5G14340.1 41.221 131 68 3 1 124 1 129 3.54e-25 104
Msa0501490 AT3G48920.1 47.872 94 49 0 27 120 26 119 9.36e-25 103
Msa0501490 AT1G18710.1 44.118 102 56 1 27 127 20 121 1.19e-24 102
Msa0501490 AT3G06490.1 43.200 125 65 1 7 125 1 125 2.15e-24 103
Msa0501490 AT3G53200.1 46.465 99 53 0 25 123 15 113 3.10e-24 100
Msa0501490 AT1G79180.2 33.908 174 72 3 13 147 2 171 3.53e-24 102
Msa0501490 AT1G25340.2 41.667 108 57 2 27 134 26 127 1.00e-23 100
Msa0501490 AT5G52260.1 45.299 117 63 1 27 142 20 136 1.03e-23 100
Msa0501490 AT1G66380.1 41.176 119 67 1 27 145 16 131 1.93e-23 95.9
Msa0501490 AT1G25340.3 41.667 108 57 2 27 134 26 127 1.93e-23 100
Msa0501490 AT5G49620.1 48.485 99 51 0 27 125 34 132 2.29e-23 100
Msa0501490 AT4G25560.1 44.792 96 53 0 27 122 18 113 6.77e-23 98.2
Msa0501490 AT1G56650.1 39.831 118 71 0 27 144 16 133 1.45e-22 96.7
Msa0501490 AT5G59780.2 44.554 101 46 2 41 141 11 101 1.97e-22 95.5
Msa0501490 AT3G46130.3 46.154 91 41 1 51 141 9 91 3.88e-22 94.7
Msa0501490 AT3G47600.2 52.703 74 35 0 52 125 39 112 5.31e-22 96.7
Msa0501490 AT3G46130.4 46.667 90 40 1 52 141 20 101 6.56e-22 94.4
Msa0501490 AT1G66370.1 43.011 93 53 0 27 119 16 108 1.18e-21 94.0
Msa0501490 AT3G27810.2 50.000 74 37 0 52 125 4 77 2.29e-21 91.3
Msa0501490 AT5G40350.2 50.704 71 35 0 50 120 3 73 1.88e-20 88.6
Msa0501490 AT3G53200.2 54.167 72 33 0 52 123 9 80 2.20e-20 89.4
Msa0501490 AT5G58850.1 37.008 127 73 3 27 150 111 233 2.32e-20 93.2
Msa0501490 AT3G12820.2 55.882 68 30 0 55 122 2 69 2.43e-20 89.0
Msa0501490 AT3G50060.1 38.983 118 66 2 26 138 11 127 4.01e-20 90.9
Msa0501490 AT5G49620.2 42.478 113 51 1 27 125 34 146 4.97e-20 90.9
Msa0501490 AT1G66390.1 45.161 93 51 0 27 119 16 108 6.53e-20 89.0
Msa0501490 AT5G35550.2 52.113 71 34 0 52 122 50 120 7.51e-20 89.4
Msa0501490 AT5G14750.3 39.048 105 55 1 55 150 18 122 3.59e-19 85.1
Msa0501490 AT3G09230.1 43.299 97 54 1 26 122 60 155 4.49e-19 89.0
Msa0501490 AT4G37260.1 44.792 96 52 1 27 122 19 113 5.53e-19 87.8
Msa0501490 AT3G55730.1 44.792 96 52 1 27 122 62 156 6.46e-19 88.6
Msa0501490 AT4G18770.1 42.268 97 54 2 27 123 223 317 2.26e-18 87.4
Msa0501490 AT2G39880.1 43.925 107 57 2 25 129 54 159 3.16e-18 86.3
Msa0501490 AT5G11050.1 44.792 96 51 2 28 123 112 205 3.32e-18 86.7
Msa0501490 AT2G23290.1 42.708 96 54 1 27 122 19 113 5.20e-18 84.7
Msa0501490 AT4G32730.5 39.175 97 58 1 26 122 92 187 5.92e-18 87.0
Msa0501490 AT4G32730.4 39.175 97 58 1 26 122 92 187 5.92e-18 87.0
Msa0501490 AT4G32730.3 39.175 97 58 1 26 122 92 187 5.92e-18 87.0
Msa0501490 AT4G32730.2 39.175 97 58 1 26 122 92 187 5.92e-18 87.0
Msa0501490 AT4G32730.1 39.175 97 58 1 26 122 92 187 6.08e-18 87.0
Msa0501490 AT5G17800.1 43.925 107 53 2 28 128 100 205 8.35e-18 84.3
Msa0501490 AT3G29020.2 40.816 98 57 1 28 125 74 170 1.86e-17 83.2
Msa0501490 AT5G67300.1 41.667 96 55 1 27 122 12 106 2.57e-17 82.8
Msa0501490 AT3G29020.1 40.816 98 57 1 28 125 72 168 2.84e-17 81.3
Msa0501490 AT5G11510.2 34.783 115 63 2 26 129 86 199 5.36e-17 84.0
Msa0501490 AT5G11510.3 34.783 115 63 2 26 129 86 199 5.36e-17 84.3
Msa0501490 AT5G11510.1 34.783 115 63 2 26 129 86 199 5.36e-17 84.3
Msa0501490 AT5G11510.4 34.783 115 63 2 26 129 86 199 5.36e-17 84.3
Msa0501490 AT5G11510.5 34.783 115 63 2 26 129 86 199 5.64e-17 84.0
Msa0501490 AT1G26780.1 35.345 116 74 1 28 143 105 219 6.54e-17 81.3
Msa0501490 AT3G27785.1 39.175 97 57 2 27 123 195 289 1.12e-16 82.0
Msa0501490 AT1G66380.3 41.489 94 52 1 52 145 8 98 1.12e-16 75.9
Msa0501490 AT5G40360.1 40.000 90 53 1 28 117 165 253 1.68e-16 80.9
Msa0501490 AT1G26780.2 35.345 116 74 1 28 143 105 219 1.93e-16 80.9
Msa0501490 AT5G02320.1 37.113 97 60 1 26 122 132 227 1.95e-16 82.0
Msa0501490 AT5G02320.2 37.113 97 60 1 26 122 132 227 1.95e-16 82.0
Msa0501490 AT5G02320.3 37.113 97 60 1 26 122 72 167 3.05e-16 81.3
Msa0501490 AT1G69560.1 37.755 98 60 1 28 125 114 210 4.79e-16 79.3
Msa0501490 AT3G09370.2 37.500 96 59 1 27 122 141 235 4.86e-16 80.5
Msa0501490 AT1G69560.2 37.755 98 60 1 28 125 130 226 4.88e-16 79.3
Msa0501490 AT3G09370.1 37.500 96 59 1 27 122 136 230 5.01e-16 80.5
Msa0501490 AT3G09370.3 37.500 96 59 1 27 122 149 243 5.87e-16 80.5
Msa0501490 AT4G33450.1 34.884 129 80 2 28 156 26 150 2.25e-15 75.9
Msa0501490 AT2G25230.1 39.394 99 58 2 20 117 24 121 3.45e-15 75.1
Msa0501490 AT2G37630.1 35.644 101 63 1 27 125 10 110 6.26e-15 76.3
Msa0501490 AT1G66380.2 47.143 70 37 0 27 96 16 85 1.53e-14 70.1
Msa0501490 AT4G00540.2 37.864 103 60 2 26 125 108 209 1.59e-14 75.5
Msa0501490 AT4G00540.1 37.864 103 60 2 26 125 106 207 2.37e-14 75.1
Msa0501490 AT1G22640.3 56.364 55 24 0 66 120 2 56 3.64e-14 71.6
Msa0501490 AT1G17950.1 36.364 99 60 2 28 125 12 108 3.20e-13 69.7
Msa0501490 AT1G73410.1 37.755 98 60 1 28 125 13 109 4.62e-13 69.3
Msa0501490 AT1G73410.2 37.755 98 60 1 28 125 13 109 7.30e-13 67.8
Msa0501490 AT3G23250.2 45.614 57 31 0 66 122 2 58 1.05e-11 64.7
Msa0501490 AT5G14750.4 36.170 94 51 2 66 150 2 95 1.28e-11 62.8
Msa0501490 AT5G14750.2 36.170 94 51 2 66 150 2 95 1.28e-11 62.8
Msa0501490 AT1G14350.2 31.313 99 67 1 26 124 30 127 1.63e-11 66.2
Msa0501490 AT1G14350.1 31.313 99 67 1 26 124 30 127 1.63e-11 66.2
Msa0501490 AT5G40430.1 39.024 82 38 1 36 117 79 148 2.77e-11 63.9
Msa0501490 AT1G18960.1 35.135 74 46 1 49 122 37 108 3.59e-11 64.3
Msa0501490 AT1G71030.2 41.538 65 38 0 58 122 5 69 4.89e-11 62.0
Msa0501490 AT1G71030.1 41.538 65 38 0 58 122 19 83 5.79e-11 62.0

Find 87 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTCATTGTCCATTCTTC+TGG 0.129935 3_4:+42714596 None:intergenic
GTTTATTGGCCTTGTAATTC+TGG 0.131215 3_4:-42713713 Msa0501490:intron
AAATGCACCTTTCTTCAAAT+TGG 0.138440 3_4:+42715063 None:intergenic
GAACAATTATAGTGGCTTTA+TGG 0.145848 3_4:-42713866 Msa0501490:intron
TTTCACATAACTCTGTTTAT+TGG 0.193979 3_4:-42713727 Msa0501490:CDS
TGATGATGCGAATTTGAAAA+AGG 0.273239 3_4:-42715230 Msa0501490:CDS
GTTGAACTTCGTGCTGAATT+TGG 0.275077 3_4:-42715016 Msa0501490:CDS
AACAATTATAGTGGCTTTAT+GGG 0.275721 3_4:-42713865 Msa0501490:intron
TTAACCTTAACATCTTGTTT+TGG 0.282496 3_4:+42713922 None:intergenic
TTCACCTTTCTCCACACATT+TGG 0.320296 3_4:-42713977 Msa0501490:CDS
CAAAACATGGTGAAGGGAAT+TGG 0.328985 3_4:-42715162 Msa0501490:CDS
ATACTTTCATACTTATTTGT+TGG 0.339875 3_4:-42714034 Msa0501490:CDS
ATGGGCTCGAATGGTTGTTT+TGG 0.347296 3_4:-42714987 Msa0501490:intron
GTGCTGAATTTGGTAACAAA+TGG 0.359005 3_4:-42715006 Msa0501490:CDS
GGGACTTGAAGGTTAATGTT+TGG 0.359885 3_4:+42714159 None:intergenic
TTGGGGATAGTCTTGAATAT+TGG 0.371818 3_4:+42713941 None:intergenic
GGAAAGAGGCAGTGGTAAAG+AGG 0.373819 3_4:-42715266 Msa0501490:CDS
AATGCACCTTTCTTCAAATT+GGG 0.376002 3_4:+42715064 None:intergenic
GAAGGTGGTGATATTGATAT+TGG 0.378950 3_4:+42714397 None:intergenic
TGTTGGTGTGGTTGGTGTGT+TGG 0.390584 3_4:+42714497 None:intergenic
GTTGGTGTGGTTGGTGTGTT+GGG 0.396039 3_4:+42714498 None:intergenic
AATGATGAAAATGTGTTGTT+TGG 0.406346 3_4:-42715299 None:intergenic
ATTTCATTGTCCATTCTTCT+GGG 0.408616 3_4:+42714597 None:intergenic
TTAAGACCCAATTTGAAGAA+AGG 0.412812 3_4:-42715070 Msa0501490:CDS
GAGAGGTTAGAGAAGGATCA+TGG 0.430789 3_4:+42714106 None:intergenic
GTGTTGTTTGGTTGGTATGA+TGG 0.439105 3_4:-42715287 Msa0501490:CDS
GTTGTAGTTGTTGCCTATGT+TGG 0.439607 3_4:+42714322 None:intergenic
AGTCTTGAATATTGGTTTGA+AGG 0.441169 3_4:+42713949 None:intergenic
ATCCCCAAAACAAGATGTTA+AGG 0.443210 3_4:-42713926 Msa0501490:intron
ATCGTTGTGGGAAGAGTTGT+AGG 0.444303 3_4:-42715111 Msa0501490:CDS
ATGAAAATGTGTTGTTTGGT+TGG 0.448376 3_4:-42715295 None:intergenic
CCACGATGCAAAGTCAAGAT+TGG 0.453651 3_4:-42712865 Msa0501490:CDS
AGTGGTAAAGAGGGTGGTGG+TGG 0.463301 3_4:-42715256 Msa0501490:CDS
AGAGGAGAATGAAGATGAGT+TGG 0.472941 3_4:+42714357 None:intergenic
TGCTGAATTTGGTAACAAAT+GGG 0.473153 3_4:-42715005 Msa0501490:CDS
GAAAGGTGAAGACGAGGAAG+AGG 0.474366 3_4:+42713990 None:intergenic
TCACCATGTGTCACACTGAC+AGG 0.480697 3_4:-42714468 Msa0501490:CDS
AATAATGTTCAAAGAAATGC+AGG 0.480880 3_4:-42715139 Msa0501490:CDS
TTGTCACAGAAGGGACTTGA+AGG 0.482543 3_4:+42714148 None:intergenic
ACAATGAAATAAATAACTAC+TGG 0.483522 3_4:-42714584 Msa0501490:CDS
GGAAGAGTTGTAGGCTCGAA+TGG 0.483674 3_4:-42715102 Msa0501490:CDS
TGACTTTGCATCGTGGAAGA+AGG 0.491634 3_4:+42712872 None:intergenic
GAAAATGTTGTTGGTGTGGT+TGG 0.491935 3_4:+42714489 None:intergenic
TCTCTTCACCACTCCAACAT+AGG 0.498003 3_4:-42714335 Msa0501490:CDS
AAGTTACTTGAGCTTAATGA+AGG 0.500829 3_4:-42713788 Msa0501490:CDS
GAAAGAGGCAGTGGTAAAGA+GGG 0.520968 3_4:-42715265 Msa0501490:CDS
ATGCAGGTTTGAATCGTTGT+GGG 0.525381 3_4:-42715123 Msa0501490:CDS
TGGTAACAAATGGGCTCGAA+TGG 0.530256 3_4:-42714996 Msa0501490:CDS
AGCTCCAAATGTGTGGAGAA+AGG 0.532039 3_4:+42713973 None:intergenic
GAAGCTCAAACACTAGCGTC+TGG 0.541227 3_4:-42713829 Msa0501490:CDS
GGTGTAGTTACCCAGAAGAA+TGG 0.556417 3_4:-42714607 Msa0501490:intron
ATTTGTTGGAATCCGATCGA+AGG 0.559290 3_4:-42714020 Msa0501490:CDS
GAAGAGTTGTAGGCTCGAAT+GGG 0.560666 3_4:-42715101 Msa0501490:CDS
GGTATGATGGAAAGAGGCAG+TGG 0.560894 3_4:-42715274 Msa0501490:CDS
GGCAGTGGTAAAGAGGGTGG+TGG 0.562649 3_4:-42715259 Msa0501490:CDS
TTTGTTGGAATCCGATCGAA+GGG 0.566657 3_4:-42714019 Msa0501490:CDS
TATTACTAACCAGAATTACA+AGG 0.569328 3_4:+42713704 None:intergenic
AGAGGCAGTGGTAAAGAGGG+TGG 0.571188 3_4:-42715262 Msa0501490:CDS
AATGCAGGTTTGAATCGTTG+TGG 0.573881 3_4:-42715124 Msa0501490:CDS
TCTCAATTCAATACAACTCG+AGG 0.577388 3_4:-42714065 Msa0501490:CDS
ACACATGGTGAAAATGTTGT+TGG 0.579250 3_4:+42714480 None:intergenic
TATGTGACAAAACATGGTGA+AGG 0.582992 3_4:-42715169 Msa0501490:CDS
CTAGATTATGTGACAAAACA+TGG 0.587205 3_4:-42715175 Msa0501490:CDS
GGTTAATGTTTGGAGTCGAA+TGG 0.589953 3_4:+42714169 None:intergenic
AGAAGGATCATGGAGTGAAG+AGG 0.599823 3_4:+42714116 None:intergenic
ATCAAAGATCGTCAAAGACA+AGG 0.600354 3_4:-42714552 Msa0501490:CDS
AAAGTGAAGGAGTGCGGTGA+AGG 0.601364 3_4:+42714240 None:intergenic
TTGGTTGGTATGATGGAAAG+AGG 0.604544 3_4:-42715280 Msa0501490:CDS
ATGTGACAAAACATGGTGAA+GGG 0.604926 3_4:-42715168 Msa0501490:CDS
GTTCCTGTCAGTGTGACACA+TGG 0.609431 3_4:+42714465 None:intergenic
AGAGGACAAAACCCTTCGAT+CGG 0.612157 3_4:+42714008 None:intergenic
AGTTGTTGCCTATGTTGGAG+TGG 0.614474 3_4:+42714327 None:intergenic
TCATGATGAGAGGTTAGAGA+AGG 0.618046 3_4:+42714099 None:intergenic
TGTTGGAGTGGTGAAGAGAG+AGG 0.619324 3_4:+42714339 None:intergenic
TGGTGAAAATGTTGTTGGTG+TGG 0.621929 3_4:+42714485 None:intergenic
TGTGGAGAAAGGTGAAGACG+AGG 0.623796 3_4:+42713984 None:intergenic
CGAAGAGGCGTAGATAAGAG+TGG 0.631912 3_4:+42714204 None:intergenic
TAAATAACTACTGGAACACA+AGG 0.632575 3_4:-42714575 Msa0501490:CDS
GTGTTTGAGATAAAGTGTGA+AGG 0.634586 3_4:+42714379 None:intergenic
TCGAAAACTATCATGATGAG+AGG 0.637476 3_4:+42714089 None:intergenic
TGAAGGTAGCTCCAAATGTG+TGG 0.640667 3_4:+42713966 None:intergenic
TGGTAGCGTTTGAAGCGAAG+AGG 0.658487 3_4:+42714189 None:intergenic
CCAATCTTGACTTTGCATCG+TGG 0.659363 3_4:+42712865 None:intergenic
TTTGAGATAAAGTGTGAAGG+TGG 0.662401 3_4:+42714382 None:intergenic
AAAGTGTCTACGAATGTGTG+AGG 0.671866 3_4:+42714288 None:intergenic
AGGCGTAGATAAGAGTGGTG+TGG 0.680337 3_4:+42714209 None:intergenic
TCGTGTTCGTCAGAATAGAG+AGG 0.681242 3_4:+42714525 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTATTTTTCACATTT+TGG - chr3_4:42714473-42714492 Msa0501490:CDS 10.0%
!! AAAGAACTTTAATTAAAGAT+TGG - chr3_4:42713241-42713260 Msa0501490:intron 15.0%
!!! ATAATTGTTCTGAAAATAAT+TGG + chr3_4:42714248-42714267 None:intergenic 15.0%
!!! TGTTATATTTTATATTGGTT+TGG - chr3_4:42714444-42714463 Msa0501490:CDS 15.0%
!! TATATTTATACTTGTTCTTA+AGG - chr3_4:42714536-42714555 Msa0501490:CDS 15.0%
!! CAAATCAAAAATCAATTTAT+GGG + chr3_4:42714842-42714861 None:intergenic 15.0%
!! TCAAATCAAAAATCAATTTA+TGG + chr3_4:42714843-42714862 None:intergenic 15.0%
!! AACTTTAATTAAAGATTGGA+TGG - chr3_4:42713245-42713264 Msa0501490:intron 20.0%
!! ACAATGAAATAAATAACTAC+TGG - chr3_4:42713540-42713559 Msa0501490:intron 20.0%
!! ATACTTTCATACTTATTTGT+TGG - chr3_4:42714090-42714109 Msa0501490:CDS 20.0%
!!! TATTTTCAGAACAATTATAG+TGG - chr3_4:42714250-42714269 Msa0501490:CDS 20.0%
! AATAATGTTCAAAGAAATGC+AGG - chr3_4:42712985-42713004 Msa0501490:intron 25.0%
! TTTAGATTAGGTTTGACTAA+TGG + chr3_4:42713197-42713216 None:intergenic 25.0%
!! TCAAACCTAATCTAAAATGT+TGG - chr3_4:42713201-42713220 Msa0501490:intron 25.0%
!! TTATGCCAACATTTTAGATT+AGG + chr3_4:42713209-42713228 None:intergenic 25.0%
! TTAATGATCGTAGTAAACTT+AGG - chr3_4:42713348-42713367 Msa0501490:intron 25.0%
! TAATGATCGTAGTAAACTTA+GGG - chr3_4:42713349-42713368 Msa0501490:intron 25.0%
! ACATTAATTGTTGTATGTTG+TGG - chr3_4:42713496-42713515 Msa0501490:intron 25.0%
!!! AACAATTTTTTGTCACAGAA+GGG + chr3_4:42713988-42714007 None:intergenic 25.0%
!!! TAACCTTAACATCTTGTTTT+GGG + chr3_4:42714204-42714223 None:intergenic 25.0%
!!! TTAACCTTAACATCTTGTTT+TGG + chr3_4:42714205-42714224 None:intergenic 25.0%
!!! AACAATTATAGTGGCTTTAT+GGG - chr3_4:42714259-42714278 Msa0501490:CDS 25.0%
! AGTTATGTGAAAAATCATCA+AGG + chr3_4:42714389-42714408 None:intergenic 25.0%
! TTTCACATAACTCTGTTTAT+TGG - chr3_4:42714397-42714416 Msa0501490:CDS 25.0%
! TATTACTAACCAGAATTACA+AGG + chr3_4:42714423-42714442 None:intergenic 25.0%
!!! GTTCTTAAGGTTTTAATTTG+TGG - chr3_4:42714549-42714568 Msa0501490:CDS 25.0%
!!! TTAAGGTTTTAATTTGTGGT+CGG - chr3_4:42714553-42714572 Msa0501490:CDS 25.0%
!! TTTTTGCTTCTTATATTCCA+AGG - chr3_4:42714782-42714801 Msa0501490:intron 25.0%
! GTAATTATATGTATAGACGT+TGG + chr3_4:42715087-42715106 None:intergenic 25.0%
! TTCATTTGATTGATCTATGT+AGG - chr3_4:42715153-42715172 Msa0501490:CDS 25.0%
! TGATGATGCGAATTTGAAAA+AGG - chr3_4:42712894-42712913 Msa0501490:CDS 30.0%
GATGATGCGAATTTGAAAAA+GGG - chr3_4:42712895-42712914 Msa0501490:CDS 30.0%
CTAGATTATGTGACAAAACA+TGG - chr3_4:42712949-42712968 Msa0501490:CDS 30.0%
TTAAGACCCAATTTGAAGAA+AGG - chr3_4:42713054-42713073 Msa0501490:intron 30.0%
AATGCACCTTTCTTCAAATT+GGG + chr3_4:42713063-42713082 None:intergenic 30.0%
AAATGCACCTTTCTTCAAAT+TGG + chr3_4:42713064-42713083 None:intergenic 30.0%
! TGCTGAATTTGGTAACAAAT+GGG - chr3_4:42713119-42713138 Msa0501490:intron 30.0%
AATGATCGTAGTAAACTTAG+GGG - chr3_4:42713350-42713369 Msa0501490:intron 30.0%
!! ATTATCCATTCAGTCACTTT+TGG - chr3_4:42713378-42713397 Msa0501490:intron 30.0%
! AGATGCATTAGTCTATATGA+AGG + chr3_4:42713440-42713459 None:intergenic 30.0%
ATTTCATTGTCCATTCTTCT+GGG + chr3_4:42713530-42713549 None:intergenic 30.0%
TATTTCATTGTCCATTCTTC+TGG + chr3_4:42713531-42713550 None:intergenic 30.0%
TAAATAACTACTGGAACACA+AGG - chr3_4:42713549-42713568 Msa0501490:intron 30.0%
!!! GAACAATTTTTTGTCACAGA+AGG + chr3_4:42713989-42714008 None:intergenic 30.0%
!! AGTCTTGAATATTGGTTTGA+AGG + chr3_4:42714178-42714197 None:intergenic 30.0%
!!! AACCTTAACATCTTGTTTTG+GGG + chr3_4:42714203-42714222 None:intergenic 30.0%
! GAACAATTATAGTGGCTTTA+TGG - chr3_4:42714258-42714277 Msa0501490:CDS 30.0%
! CTTTATGGGAGATCTTTTAA+TGG - chr3_4:42714273-42714292 Msa0501490:CDS 30.0%
AAGTTACTTGAGCTTAATGA+AGG - chr3_4:42714336-42714355 Msa0501490:CDS 30.0%
!!! CATTTTGGTTGCATTTTGTT+TGG - chr3_4:42714488-42714507 Msa0501490:CDS 30.0%
CTTACACTAATAAACAACTC+CGG - chr3_4:42714726-42714745 Msa0501490:intron 30.0%
TTACACTAATAAACAACTCC+GGG - chr3_4:42714727-42714746 Msa0501490:intron 30.0%
CTATGTAGGACAAAAAACAA+AGG - chr3_4:42715167-42715186 Msa0501490:CDS 30.0%
TATGTGACAAAACATGGTGA+AGG - chr3_4:42712955-42712974 Msa0501490:intron 35.0%
ATGTGACAAAACATGGTGAA+GGG - chr3_4:42712956-42712975 Msa0501490:intron 35.0%
! GTGCTGAATTTGGTAACAAA+TGG - chr3_4:42713118-42713137 Msa0501490:intron 35.0%
AGTGACTGAATGGATAATTC+TGG + chr3_4:42713376-42713395 None:intergenic 35.0%
TTCAACCAAAAGTGACTGAA+TGG + chr3_4:42713386-42713405 None:intergenic 35.0%
ATCAAAGATCGTCAAAGACA+AGG - chr3_4:42713572-42713591 Msa0501490:intron 35.0%
ACACATGGTGAAAATGTTGT+TGG + chr3_4:42713647-42713666 None:intergenic 35.0%
GAAGGTGGTGATATTGATAT+TGG + chr3_4:42713730-42713749 None:intergenic 35.0%
! TTTGAGATAAAGTGTGAAGG+TGG + chr3_4:42713745-42713764 None:intergenic 35.0%
! GTGTTTGAGATAAAGTGTGA+AGG + chr3_4:42713748-42713767 None:intergenic 35.0%
!! TTTTGAAAAGTGAAGGAGTG+CGG + chr3_4:42713893-42713912 None:intergenic 35.0%
!! TGTGGCTTTTTGAAAAGTGA+AGG + chr3_4:42713900-42713919 None:intergenic 35.0%
TCGAAAACTATCATGATGAG+AGG + chr3_4:42714038-42714057 None:intergenic 35.0%
TCTCAATTCAATACAACTCG+AGG - chr3_4:42714059-42714078 Msa0501490:CDS 35.0%
! TTGGGGATAGTCTTGAATAT+TGG + chr3_4:42714186-42714205 None:intergenic 35.0%
ATCCCCAAAACAAGATGTTA+AGG - chr3_4:42714198-42714217 Msa0501490:CDS 35.0%
!! GTTTATTGGCCTTGTAATTC+TGG - chr3_4:42714411-42714430 Msa0501490:CDS 35.0%
TACACTAATAAACAACTCCG+GGG - chr3_4:42714728-42714747 Msa0501490:intron 35.0%
TTCTATGTTTGATATAGCCC+CGG + chr3_4:42714748-42714767 None:intergenic 35.0%
GGTAGATAAGCATTATTCCT+TGG + chr3_4:42714802-42714821 None:intergenic 35.0%
TGGGATCACATGACATATAA+AGG + chr3_4:42714823-42714842 None:intergenic 35.0%
!! GTGTTGTTTGGTTGGTATGA+TGG - chr3_4:42712837-42712856 Msa0501490:CDS 40.0%
! TTGGTTGGTATGATGGAAAG+AGG - chr3_4:42712844-42712863 Msa0501490:CDS 40.0%
TCTAGCAAAATTGCATCCTC+TGG + chr3_4:42712934-42712953 None:intergenic 40.0%
CAAAACATGGTGAAGGGAAT+TGG - chr3_4:42712962-42712981 Msa0501490:intron 40.0%
AATGCAGGTTTGAATCGTTG+TGG - chr3_4:42713000-42713019 Msa0501490:intron 40.0%
ATGCAGGTTTGAATCGTTGT+GGG - chr3_4:42713001-42713020 Msa0501490:intron 40.0%
GTTGAACTTCGTGCTGAATT+TGG - chr3_4:42713108-42713127 Msa0501490:intron 40.0%
GAAAATGTTGTTGGTGTGGT+TGG + chr3_4:42713638-42713657 None:intergenic 40.0%
TGGTGAAAATGTTGTTGGTG+TGG + chr3_4:42713642-42713661 None:intergenic 40.0%
AGAGGAGAATGAAGATGAGT+TGG + chr3_4:42713770-42713789 None:intergenic 40.0%
GTTGTAGTTGTTGCCTATGT+TGG + chr3_4:42713805-42713824 None:intergenic 40.0%
! AAAGTGTCTACGAATGTGTG+AGG + chr3_4:42713839-42713858 None:intergenic 40.0%
! GGTTAATGTTTGGAGTCGAA+TGG + chr3_4:42713958-42713977 None:intergenic 40.0%
GGGACTTGAAGGTTAATGTT+TGG + chr3_4:42713968-42713987 None:intergenic 40.0%
TCATGATGAGAGGTTAGAGA+AGG + chr3_4:42714028-42714047 None:intergenic 40.0%
! ATTTGTTGGAATCCGATCGA+AGG - chr3_4:42714104-42714123 Msa0501490:CDS 40.0%
TTTGTTGGAATCCGATCGAA+GGG - chr3_4:42714105-42714124 Msa0501490:CDS 40.0%
TTCACCTTTCTCCACACATT+TGG - chr3_4:42714147-42714166 Msa0501490:CDS 40.0%
GAAAGAGGCAGTGGTAAAGA+GGG - chr3_4:42712859-42712878 Msa0501490:CDS 45.0%
ATCGTTGTGGGAAGAGTTGT+AGG - chr3_4:42713013-42713032 Msa0501490:intron 45.0%
GAAGAGTTGTAGGCTCGAAT+GGG - chr3_4:42713023-42713042 Msa0501490:intron 45.0%
! TGGTAACAAATGGGCTCGAA+TGG - chr3_4:42713128-42713147 Msa0501490:intron 45.0%
! ATGGGCTCGAATGGTTGTTT+TGG - chr3_4:42713137-42713156 Msa0501490:intron 45.0%
GGTGTAGTTACCCAGAAGAA+TGG - chr3_4:42713517-42713536 Msa0501490:intron 45.0%
TCGTGTTCGTCAGAATAGAG+AGG + chr3_4:42713602-42713621 None:intergenic 45.0%
TCTCTTCACCACTCCAACAT+AGG - chr3_4:42713789-42713808 Msa0501490:CDS 45.0%
AGTTGTTGCCTATGTTGGAG+TGG + chr3_4:42713800-42713819 None:intergenic 45.0%
TTGTCACAGAAGGGACTTGA+AGG + chr3_4:42713979-42713998 None:intergenic 45.0%
AGAAGGATCATGGAGTGAAG+AGG + chr3_4:42714011-42714030 None:intergenic 45.0%
GAGAGGTTAGAGAAGGATCA+TGG + chr3_4:42714021-42714040 None:intergenic 45.0%
AGAGGACAAAACCCTTCGAT+CGG + chr3_4:42714119-42714138 None:intergenic 45.0%
AGCTCCAAATGTGTGGAGAA+AGG + chr3_4:42714154-42714173 None:intergenic 45.0%
TGAAGGTAGCTCCAAATGTG+TGG + chr3_4:42714161-42714180 None:intergenic 45.0%
TGACTTTGCATCGTGGAAGA+AGG + chr3_4:42715255-42715274 None:intergenic 45.0%
CCAATCTTGACTTTGCATCG+TGG + chr3_4:42715262-42715281 None:intergenic 45.0%
CCACGATGCAAAGTCAAGAT+TGG - chr3_4:42715259-42715278 Msa0501490:CDS 45.0%
!!! AATAATGTTATATTTTATAT+TGG - chr3_4:42714439-42714458 Msa0501490:CDS 5.0%
!! AAAAAAATAATTGTTTATAA+AGG - chr3_4:42714972-42714991 Msa0501490:intron 5.0%
!! AAAAAATAATTGTTTATAAA+GGG - chr3_4:42714973-42714992 Msa0501490:intron 5.0%
! GGTATGATGGAAAGAGGCAG+TGG - chr3_4:42712850-42712869 Msa0501490:CDS 50.0%
GGAAAGAGGCAGTGGTAAAG+AGG - chr3_4:42712858-42712877 Msa0501490:CDS 50.0%
!! GCATCCTCTGGTGTTGTCTA+AGG + chr3_4:42712922-42712941 None:intergenic 50.0%
GGAAGAGTTGTAGGCTCGAA+TGG - chr3_4:42713022-42713041 Msa0501490:intron 50.0%
! GTTGGTGTGGTTGGTGTGTT+GGG + chr3_4:42713629-42713648 None:intergenic 50.0%
! TGTTGGTGTGGTTGGTGTGT+TGG + chr3_4:42713630-42713649 None:intergenic 50.0%
TCACCATGTGTCACACTGAC+AGG - chr3_4:42713656-42713675 Msa0501490:intron 50.0%
GTTCCTGTCAGTGTGACACA+TGG + chr3_4:42713662-42713681 None:intergenic 50.0%
TGTTGGAGTGGTGAAGAGAG+AGG + chr3_4:42713788-42713807 None:intergenic 50.0%
! AAAGTGAAGGAGTGCGGTGA+AGG + chr3_4:42713887-42713906 None:intergenic 50.0%
AGGCGTAGATAAGAGTGGTG+TGG + chr3_4:42713918-42713937 None:intergenic 50.0%
! CGAAGAGGCGTAGATAAGAG+TGG + chr3_4:42713923-42713942 None:intergenic 50.0%
! TGGTAGCGTTTGAAGCGAAG+AGG + chr3_4:42713938-42713957 None:intergenic 50.0%
GAAAGGTGAAGACGAGGAAG+AGG + chr3_4:42714137-42714156 None:intergenic 50.0%
TGTGGAGAAAGGTGAAGACG+AGG + chr3_4:42714143-42714162 None:intergenic 50.0%
GAAGCTCAAACACTAGCGTC+TGG - chr3_4:42714295-42714314 Msa0501490:CDS 50.0%
AGAGGCAGTGGTAAAGAGGG+TGG - chr3_4:42712862-42712881 Msa0501490:CDS 55.0%
! AGTGGTAAAGAGGGTGGTGG+TGG - chr3_4:42712868-42712887 Msa0501490:CDS 55.0%
GGGTCCTTAGACAACACCAG+AGG - chr3_4:42712915-42712934 Msa0501490:CDS 55.0%
GGCAGTGGTAAAGAGGGTGG+TGG - chr3_4:42712865-42712884 Msa0501490:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 42712835 42715311 42712835 ID=Msa0501490;Name=Msa0501490
chr3_4 mRNA 42712835 42715311 42712835 ID=Msa0501490-mRNA-1;Parent=Msa0501490;Name=Msa0501490-mRNA-1;_AED=0.05;_eAED=0.07;_QI=0|0|0|1|0.5|0.4|5|0|434
chr3_4 exon 42715230 42715311 42715230 ID=Msa0501490-mRNA-1:exon:9040;Parent=Msa0501490-mRNA-1
chr3_4 exon 42714988 42715211 42714988 ID=Msa0501490-mRNA-1:exon:9039;Parent=Msa0501490-mRNA-1
chr3_4 exon 42713927 42714622 42713927 ID=Msa0501490-mRNA-1:exon:9038;Parent=Msa0501490-mRNA-1
chr3_4 exon 42713714 42713876 42713714 ID=Msa0501490-mRNA-1:exon:9037;Parent=Msa0501490-mRNA-1
chr3_4 exon 42712835 42712971 42712835 ID=Msa0501490-mRNA-1:exon:9036;Parent=Msa0501490-mRNA-1
chr3_4 CDS 42715230 42715311 42715230 ID=Msa0501490-mRNA-1:cds;Parent=Msa0501490-mRNA-1
chr3_4 CDS 42714988 42715211 42714988 ID=Msa0501490-mRNA-1:cds;Parent=Msa0501490-mRNA-1
chr3_4 CDS 42713927 42714622 42713927 ID=Msa0501490-mRNA-1:cds;Parent=Msa0501490-mRNA-1
chr3_4 CDS 42713714 42713876 42713714 ID=Msa0501490-mRNA-1:cds;Parent=Msa0501490-mRNA-1
chr3_4 CDS 42712835 42712971 42712835 ID=Msa0501490-mRNA-1:cds;Parent=Msa0501490-mRNA-1
Gene Sequence

>Msa0501490

ATGTGTTGTTTGGTTGGTATGATGGAAAGAGGCAGTGGTAAAGAGGGTGGTGGTGGTTGTGATGATGCGAATTTGAAAAAGGAGGATGCAATTTTGCTAGATTATGTGACAAAACATGGTGAAGGGAATTGGAATAATGTTCAAAGAAATGCAGGTTTGAATCGTTGTGGGAAGAGTTGTAGGCTCGAATGGGCTAATCATTTAAGACCCAATTTGAAGAAAGGTGCATTTTCTCATGAAGAAGAGAAACTCATTGTTGAACTTCGTGCTGAATTTGGTAACAAATGGGCTCGAATGGTTGTTTTGTTACCCAGAAGAATGGACAATGAAATAAATAACTACTGGAACACAAGGATCAAAGATCGTCAAAGACAAGGTCTTCCTCTCTATTCTGACGAACACGATCGTCCCAACACACCAACCACACCAACAACATTTTCACCATGTGTCACACTGACAGGAACAAACTCTTACAACATTACAACAAAGTTTGAGTTTTTAAATCAAAACCAATATCAATATCACCACCTTCACACTTTATCTCAAACACCAACTCATCTTCATTCTCCTCTCTCTTCACCACTCCAACATAGGCAACAACTACAACATTCTAATTATCCTCACACATTCGTAGACACTTTATCTGCACTATTTTCATCTTCTACACCTTCACCGCACTCCTTCACTTTTCAAAAAGCCACACCACTCTTATCTACGCCTCTTCGCTTCAAACGCTACCATTCGACTCCAAACATTAACCTTCAAGTCCCTTCTGTGACAAAAAATTGTTCCTCTTCACTCCATGATCCTTCTCTAACCTCTCATCATGATAGTTTTCGATTCTCAATTCAATACAACTCGAGGTTTTCTCAATACTTTCATACTTATTTGTTGGAATCCGATCGAAGGGTTTTGTCCTCTTCCTCGTCTTCACCTTTCTCCACACATTTGGAGCTACCTTCAAACCAATATTCAAGACTATCCCCAAAACAAGATGTTAAGTGGCTTTATGGGAGATCTTTTAATGGAAGCTCAAACACTAGCGTCTGGTCAAAATTCAAAGAAAAGAAGTTACTTGAGCTTAATGAAGGATATGATTTGTTTAATGAATATCAAAGCCTTGATGATTTTTCACATAACTCTGTTTATTGGCCTTGTAATTCTGGACAAAAAACAAAGGAAGAAGCACAAGAACTAAGCAAATTTATGAATGACGATATGTCAACAATGCTAACTGTGATGCCTTCTTCCACGATGCAAAGTCAAGATTGGAACAACAACAACAACAACATTGCATCAGAA
Protein sequence

>Msa0501490

MCCLVGMMERGSGKEGGGGCDDANLKKEDAILLDYVTKHGEGNWNNVQRNAGLNRCGKSCRLEWANHLRPNLKKGAFSHEEEKLIVELRAEFGNKWARMVVLLPRRMDNEINNYWNTRIKDRQRQGLPLYSDEHDRPNTPTTPTTFSPCVTLTGTNSYNITTKFEFLNQNQYQYHHLHTLSQTPTHLHSPLSSPLQHRQQLQHSNYPHTFVDTLSALFSSSTPSPHSFTFQKATPLLSTPLRFKRYHSTPNINLQVPSVTKNCSSSLHDPSLTSHHDSFRFSIQYNSRFSQYFHTYLLESDRRVLSSSSSSPFSTHLELPSNQYSRLSPKQDVKWLYGRSFNGSSNTSVWSKFKEKKLLELNEGYDLFNEYQSLDDFSHNSVYWPCNSGQKTKEEAQELSKFMNDDMSTMLTVMPSSTMQSQDWNNNNNNIASE