AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0501780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501780 MtrunA17_Chr3g0099641 90.776 477 33 3 2 478 3 468 0.0 852
Msa0501780 MtrunA17_Chr2g0288871 43.271 483 201 11 34 455 60 530 4.46e-96 300
Msa0501780 MtrunA17_Chr2g0322391 40.447 492 207 15 36 456 81 557 3.09e-91 289
Msa0501780 MtrunA17_Chr4g0075201 38.696 460 200 12 36 443 36 465 1.70e-86 274
Msa0501780 MtrunA17_Chr7g0270831 36.123 454 204 12 24 455 13 402 6.31e-69 226
Msa0501780 MtrunA17_Chr4g0025051 35.281 462 202 14 89 462 100 552 9.09e-65 219
Msa0501780 MtrunA17_Chr4g0025061 34.444 450 202 13 95 463 131 568 1.35e-62 214
Msa0501780 MtrunA17_Chr2g0302391 47.863 234 107 7 235 458 185 413 1.11e-57 196
Msa0501780 MtrunA17_Chr4g0024391 33.698 457 191 15 97 457 2 442 8.09e-57 196
Msa0501780 MtrunA17_Chr7g0216891 36.120 299 114 6 235 459 192 487 5.49e-46 168
Msa0501780 MtrunA17_Chr4g0051181 40.076 262 117 7 245 469 227 485 1.68e-42 157
Msa0501780 MtrunA17_Chr4g0060271 56.790 162 53 3 236 382 230 389 1.41e-38 148
Msa0501780 MtrunA17_Chr5g0419241 72.308 65 18 0 225 289 41 105 3.41e-29 110
Msa0501780 MtrunA17_Chr4g0001361 33.178 214 101 6 244 457 145 316 1.25e-28 115
Msa0501780 MtrunA17_Chr3g0136961 28.958 259 121 6 61 319 1 196 7.71e-26 107
Msa0501780 MtrunA17_Chr1g0150271 47.368 95 48 1 245 337 83 177 1.35e-25 105
Msa0501780 MtrunA17_Chr4g0004911 39.416 137 72 4 193 321 262 395 1.31e-24 106
Msa0501780 MtrunA17_Chr4g0004911 35.955 89 56 1 242 330 165 252 4.65e-13 71.2
Msa0501780 MtrunA17_Chr5g0432161 47.191 89 46 1 233 321 393 480 8.12e-24 104
Msa0501780 MtrunA17_Chr5g0432161 50.000 60 28 2 262 321 245 302 7.19e-12 67.8
Msa0501780 MtrunA17_Chr5g0445311 52.564 78 36 1 244 321 347 423 1.49e-23 103
Msa0501780 MtrunA17_Chr5g0447701 45.361 97 51 2 235 331 226 320 1.52e-23 102
Msa0501780 MtrunA17_Chr3g0101131 52.564 78 36 1 244 321 398 474 1.53e-23 103
Msa0501780 MtrunA17_Chr1g0150281 44.444 108 59 1 246 353 125 231 3.62e-23 99.4
Msa0501780 MtrunA17_Chr7g0218081 45.918 98 49 2 240 337 389 482 4.56e-23 102
Msa0501780 MtrunA17_Chr7g0218081 53.333 60 26 2 262 321 229 286 3.38e-13 71.6
Msa0501780 MtrunA17_Chr3g0106491 44.944 89 48 1 233 321 337 424 6.47e-23 101
Msa0501780 MtrunA17_Chr3g0106491 48.333 60 29 2 262 321 199 256 8.25e-12 67.4
Msa0501780 MtrunA17_Chr3g0079691 52.564 78 36 1 244 321 478 554 1.29e-22 101
Msa0501780 MtrunA17_Chr3g0079691 42.683 82 44 3 262 342 281 360 7.70e-14 73.9
Msa0501780 MtrunA17_Chr4g0051881 35.165 182 95 5 248 416 165 336 1.40e-22 98.6
Msa0501780 MtrunA17_Chr7g0243891 44.554 101 50 2 226 321 334 433 1.80e-22 100
Msa0501780 MtrunA17_Chr7g0243891 42.466 73 40 2 262 334 217 287 8.05e-11 64.3
Msa0501780 MtrunA17_Chr2g0333851 29.224 219 99 5 238 451 142 309 2.49e-22 97.4
Msa0501780 MtrunA17_Chr5g0418191 46.988 83 43 1 239 321 298 379 3.40e-22 99.0
Msa0501780 MtrunA17_Chr5g0418191 47.222 72 36 2 262 333 152 221 2.41e-13 72.0
Msa0501780 MtrunA17_Chr2g0294231 48.148 81 41 1 245 325 187 266 5.02e-22 97.8
Msa0501780 MtrunA17_Chr4g0042831 47.561 82 42 1 240 321 257 337 9.99e-22 97.1
Msa0501780 MtrunA17_Chr4g0042831 42.500 80 43 2 262 341 146 222 3.16e-11 65.1
Msa0501780 MtrunA17_Chr5g0443131 49.383 81 40 1 248 328 144 223 2.50e-21 94.4
Msa0501780 MtrunA17_Chr7g0270191 42.857 98 51 2 245 342 129 221 3.48e-21 93.6
Msa0501780 MtrunA17_Chr7g0249311 48.718 78 39 1 244 321 375 451 4.61e-21 96.7
Msa0501780 MtrunA17_Chr7g0249311 46.875 64 32 2 262 325 180 241 5.17e-12 68.2
Msa0501780 MtrunA17_Chr7g0249301 48.718 78 39 1 244 321 275 351 9.56e-21 94.0
Msa0501780 MtrunA17_Chr7g0249301 44.928 69 36 2 257 325 58 124 1.71e-12 68.9
Msa0501780 MtrunA17_Chr4g0068541 46.341 82 43 1 245 326 192 272 1.31e-20 94.0
Msa0501780 MtrunA17_Chr1g0194481 40.385 104 60 2 245 347 142 244 1.55e-20 92.4
Msa0501780 MtrunA17_Chr5g0418781 46.914 81 42 1 238 318 101 180 2.04e-20 91.3
Msa0501780 MtrunA17_Chr7g0224801 50.667 75 36 1 250 324 82 155 2.16e-20 88.2
Msa0501780 MtrunA17_Chr1g0150801 49.315 73 36 1 246 318 87 158 4.69e-20 87.0
Msa0501780 MtrunA17_Chr7g0263531 46.988 83 43 1 239 321 339 420 6.64e-20 92.0
Msa0501780 MtrunA17_Chr7g0263531 44.000 75 40 2 262 336 190 262 6.14e-13 70.5
Msa0501780 MtrunA17_Chr8g0386241 42.857 84 47 1 244 327 86 168 1.36e-19 86.3
Msa0501780 MtrunA17_Chr3g0129321 50.000 74 36 1 248 321 105 177 3.91e-19 85.9
Msa0501780 MtrunA17_Chr1g0184691 51.389 72 35 0 257 328 289 360 4.22e-19 88.6
Msa0501780 MtrunA17_Chr2g0284321 58.065 62 26 0 261 322 35 96 5.28e-19 85.5
Msa0501780 MtrunA17_Chr7g0270051 42.857 98 47 2 243 334 29 123 5.58e-19 86.7
Msa0501780 MtrunA17_Chr8g0379461 46.739 92 42 2 252 342 66 151 5.92e-19 86.3
Msa0501780 MtrunA17_Chr7g0248721 49.425 87 39 3 245 331 125 206 9.00e-19 85.1
Msa0501780 MtrunA17_Chr4g0053281 50.685 73 36 0 248 320 253 325 9.35e-19 87.4
Msa0501780 MtrunA17_Chr8g0383251 44.156 77 42 1 248 324 95 170 9.81e-19 84.0
Msa0501780 MtrunA17_Chr2g0293481 40.000 110 65 1 228 336 233 342 1.02e-18 88.6
Msa0501780 MtrunA17_Chr5g0401821 50.000 74 37 0 247 320 185 258 1.33e-18 85.9
Msa0501780 MtrunA17_Chr8g0335811 46.053 76 40 1 244 319 137 211 1.51e-18 84.7
Msa0501780 MtrunA17_Chr2g0289181 41.975 81 47 0 256 336 9 89 1.61e-18 84.7
Msa0501780 MtrunA17_Chr2g0319961 51.429 70 34 0 252 321 71 140 1.65e-18 85.1
Msa0501780 MtrunA17_Chr4g0074001 48.052 77 39 1 245 321 343 418 2.20e-18 87.8
Msa0501780 MtrunA17_Chr3g0129361 44.737 76 41 1 244 319 127 201 4.33e-18 83.2
Msa0501780 MtrunA17_Chr1g0147881 43.421 76 43 0 245 320 246 321 4.76e-18 85.5
Msa0501780 MtrunA17_Chr7g0228941 47.887 71 37 0 248 318 39 109 6.01e-18 80.1
Msa0501780 MtrunA17_Chr4g0071521 47.500 80 41 1 241 319 224 303 7.83e-18 84.3
Msa0501780 MtrunA17_Chr1g0188941 48.485 66 33 1 256 321 46 110 1.68e-17 78.2
Msa0501780 MtrunA17_Chr1g0202461 41.489 94 53 1 258 351 258 349 1.57e-16 81.3
Msa0501780 MtrunA17_Chr8g0383351 44.156 77 41 2 244 319 142 217 1.68e-16 79.0
Msa0501780 MtrunA17_Chr8g0348311 45.946 74 40 0 258 331 152 225 2.54e-16 80.1
Msa0501780 MtrunA17_Chr3g0139021 44.595 74 41 0 245 318 298 371 3.11e-16 80.5
Msa0501780 MtrunA17_Chr6g0485431 47.561 82 40 3 242 321 134 214 4.73e-16 79.7
Msa0501780 MtrunA17_Chr7g0248691 39.362 94 50 1 258 351 151 237 1.35e-15 77.8
Msa0501780 MtrunA17_Chr8g0387501 43.056 72 41 0 260 331 128 199 4.24e-15 75.5
Msa0501780 MtrunA17_Chr7g0238921 54.098 61 27 1 262 322 125 184 8.91e-15 75.1
Msa0501780 MtrunA17_Chr1g0189391 42.466 73 40 2 248 319 84 155 1.49e-13 71.6
Msa0501780 MtrunA17_Chr8g0347251 46.575 73 32 2 260 325 135 207 5.93e-12 67.0
Msa0501780 MtrunA17_Chr7g0244981 43.210 81 44 1 262 340 123 203 7.47e-12 65.9
Msa0501780 MtrunA17_Chr5g0432071 40.260 77 44 2 262 338 105 179 1.13e-11 64.3
Msa0501780 MtrunA17_Chr8g0387981 35.593 118 58 5 223 322 83 200 2.18e-11 65.5
Msa0501780 MtrunA17_Chr7g0244971 36.364 99 60 2 245 340 106 204 2.35e-11 64.7
Msa0501780 MtrunA17_Chr5g0447711 34.783 92 57 3 251 341 220 309 3.00e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501780 AT4G04450.1 40.202 495 206 19 35 454 24 503 4.96e-91 287
Msa0501780 AT4G04450.2 42.857 413 174 12 89 454 12 409 3.00e-89 279
Msa0501780 AT1G62300.1 40.678 472 217 15 36 457 84 542 4.78e-88 280
Msa0501780 AT4G22070.4 43.341 413 166 13 28 383 19 420 9.44e-75 245
Msa0501780 AT4G22070.3 43.341 413 166 13 28 383 19 420 9.44e-75 245
Msa0501780 AT4G22070.2 43.341 413 166 13 28 383 19 420 9.44e-75 245
Msa0501780 AT4G22070.1 43.341 413 166 13 28 383 19 420 9.44e-75 245
Msa0501780 AT4G01720.1 48.996 249 106 5 223 451 196 443 8.63e-54 188
Msa0501780 AT1G68150.1 40.078 257 124 8 102 357 100 327 5.32e-45 162
Msa0501780 AT5G15130.2 37.237 333 147 10 204 475 121 452 9.26e-45 164
Msa0501780 AT5G15130.1 37.237 333 147 10 204 475 163 494 9.69e-45 165
Msa0501780 AT1G18860.1 57.333 150 56 3 241 383 219 367 3.61e-40 152
Msa0501780 AT1G69810.1 33.762 311 184 8 88 383 18 321 2.55e-36 138
Msa0501780 AT1G69810.2 47.771 157 76 3 228 383 112 263 4.45e-34 131
Msa0501780 AT4G31800.1 28.141 398 171 13 66 451 7 301 2.97e-27 111
Msa0501780 AT1G80840.1 32.569 218 98 6 238 451 119 291 1.53e-26 109
Msa0501780 AT4G31800.2 31.193 218 83 5 235 451 85 236 1.25e-24 102
Msa0501780 AT2G38470.1 38.636 132 66 4 244 375 345 461 4.65e-24 105
Msa0501780 AT2G38470.1 45.205 73 37 3 249 321 173 242 8.77e-12 67.8
Msa0501780 AT1G13960.2 53.012 83 38 1 239 321 234 315 8.03e-24 102
Msa0501780 AT1G13960.2 53.333 60 26 2 262 321 77 134 6.39e-13 70.5
Msa0501780 AT1G29860.1 38.971 136 72 4 245 370 120 254 8.31e-24 101
Msa0501780 AT1G13960.1 53.012 83 38 1 239 321 387 468 1.02e-23 104
Msa0501780 AT1G13960.1 53.333 60 26 2 262 321 230 287 4.17e-13 72.0
Msa0501780 AT5G07100.2 45.361 97 47 2 241 332 121 216 3.37e-23 97.8
Msa0501780 AT5G07100.4 45.361 97 47 2 241 332 121 216 3.37e-23 97.8
Msa0501780 AT5G07100.5 45.361 97 47 2 241 332 121 216 3.37e-23 97.8
Msa0501780 AT5G07100.3 45.361 97 47 2 241 332 121 216 3.37e-23 97.8
Msa0501780 AT4G26640.5 51.282 78 37 1 244 321 188 264 3.89e-23 101
Msa0501780 AT4G26640.6 51.282 78 37 1 244 321 188 264 3.89e-23 101
Msa0501780 AT4G26640.4 51.282 78 37 1 244 321 188 264 3.89e-23 101
Msa0501780 AT4G26640.3 51.282 78 37 1 244 321 188 264 3.89e-23 101
Msa0501780 AT5G07100.1 45.361 97 47 2 241 332 214 309 5.49e-23 99.8
Msa0501780 AT5G46350.1 42.969 128 61 4 234 351 147 272 5.59e-23 99.8
Msa0501780 AT4G26640.7 51.282 78 37 1 244 321 324 400 6.83e-23 102
Msa0501780 AT4G26640.1 51.282 78 37 1 244 321 292 368 7.77e-23 101
Msa0501780 AT4G26640.2 51.282 78 37 1 244 321 364 440 9.97e-23 101
Msa0501780 AT2G03340.1 50.602 83 40 1 239 321 393 474 1.76e-22 100
Msa0501780 AT2G03340.1 56.667 60 24 2 262 321 251 308 2.01e-14 75.9
Msa0501780 AT2G25000.2 61.290 62 24 0 260 321 102 163 1.77e-22 96.3
Msa0501780 AT2G25000.4 61.290 62 24 0 260 321 102 163 1.77e-22 96.3
Msa0501780 AT2G25000.3 61.290 62 24 0 260 321 124 185 2.67e-22 96.3
Msa0501780 AT2G25000.1 61.290 62 24 0 260 321 145 206 3.39e-22 96.7
Msa0501780 AT5G26170.1 50.685 73 35 1 247 319 99 170 3.47e-22 94.0
Msa0501780 AT5G41570.1 52.941 85 36 2 245 329 82 162 4.67e-22 93.6
Msa0501780 AT2G47260.1 45.545 101 50 2 245 341 158 257 4.85e-22 97.4
Msa0501780 AT5G56270.1 49.398 83 41 1 239 321 465 546 5.15e-22 100
Msa0501780 AT5G56270.1 49.180 61 29 2 262 322 274 332 7.89e-12 68.2
Msa0501780 AT4G18170.1 51.948 77 36 1 245 321 156 231 7.68e-22 96.7
Msa0501780 AT2G04880.2 48.684 76 38 1 247 322 269 343 9.38e-22 98.2
Msa0501780 AT2G04880.2 33.333 129 64 4 200 321 56 169 1.09e-11 67.4
Msa0501780 AT2G04880.1 48.684 76 38 1 247 322 293 367 9.79e-22 98.2
Msa0501780 AT2G04880.1 33.333 129 64 4 200 321 56 169 9.64e-12 67.4
Msa0501780 AT5G49520.1 44.944 89 48 1 245 333 205 292 1.46e-21 97.1
Msa0501780 AT3G01970.1 42.991 107 47 2 227 320 18 123 1.47e-21 91.3
Msa0501780 AT1G64000.1 53.659 82 34 2 248 329 101 178 2.02e-21 92.4
Msa0501780 AT3G01080.1 48.718 78 39 1 244 321 289 365 3.43e-21 96.3
Msa0501780 AT3G01080.1 50.000 60 28 2 262 321 168 225 2.19e-11 66.2
Msa0501780 AT3G01080.2 48.718 78 39 1 244 321 327 403 3.62e-21 96.3
Msa0501780 AT3G01080.2 50.000 60 28 2 262 321 206 263 2.14e-11 66.2
Msa0501780 AT2G30250.1 51.282 78 37 1 244 321 311 387 4.42e-21 95.5
Msa0501780 AT2G46130.1 44.898 98 50 2 234 331 3 96 1.44e-20 87.0
Msa0501780 AT1G69310.4 44.444 81 44 1 238 318 124 203 3.88e-20 90.9
Msa0501780 AT1G69310.2 44.444 81 44 1 238 318 124 203 3.88e-20 90.9
Msa0501780 AT1G69310.1 44.444 81 44 1 238 318 124 203 3.88e-20 90.9
Msa0501780 AT5G13080.1 53.425 73 33 1 248 320 54 125 8.75e-20 86.3
Msa0501780 AT4G30935.1 36.364 132 61 3 190 321 282 390 2.07e-19 91.3
Msa0501780 AT3G62340.1 53.247 77 35 1 245 321 102 177 2.19e-19 88.6
Msa0501780 AT1G55600.1 47.436 78 40 1 245 322 291 367 7.03e-19 89.7
Msa0501780 AT2G23320.1 57.627 59 25 0 262 320 241 299 1.05e-18 87.4
Msa0501780 AT4G26440.1 40.594 101 57 2 245 345 356 453 1.29e-18 89.4
Msa0501780 AT1G29280.1 35.115 131 63 2 209 324 14 137 1.63e-18 85.5
Msa0501780 AT4G24240.1 48.148 81 41 1 241 320 260 340 2.38e-18 86.7
Msa0501780 AT5G28650.1 53.968 63 29 0 257 319 258 320 2.55e-18 86.3
Msa0501780 AT2G44745.1 45.333 75 40 1 244 318 128 201 3.16e-18 84.0
Msa0501780 AT2G30590.1 45.122 82 41 1 246 323 294 375 3.38e-18 86.7
Msa0501780 AT2G34830.1 41.748 103 59 1 227 328 180 282 5.83e-18 86.3
Msa0501780 AT2G34830.2 41.748 103 59 1 227 328 189 291 5.88e-18 86.7
Msa0501780 AT4G23550.1 44.444 81 45 0 256 336 135 215 6.02e-18 85.1
Msa0501780 AT1G30650.1 41.748 103 59 1 227 328 182 284 6.81e-18 86.3
Msa0501780 AT4G39410.1 44.737 76 41 1 244 319 206 280 8.18e-18 84.3
Msa0501780 AT2G37260.2 42.105 95 45 3 236 327 248 335 1.09e-17 84.7
Msa0501780 AT2G37260.2 46.667 75 36 3 262 334 84 156 2.19e-14 74.7
Msa0501780 AT5G64810.1 46.479 71 37 1 248 318 97 166 1.12e-17 81.6
Msa0501780 AT2G37260.3 42.105 95 45 3 236 327 250 337 1.15e-17 84.7
Msa0501780 AT2G37260.3 46.667 75 36 3 262 334 86 158 2.14e-14 74.7
Msa0501780 AT3G04670.1 52.381 63 30 0 257 319 258 320 1.23e-17 84.3
Msa0501780 AT4G01250.1 39.048 105 51 1 261 352 128 232 1.43e-17 83.6
Msa0501780 AT2G37260.1 42.105 95 45 3 236 327 330 417 1.87e-17 84.7
Msa0501780 AT2G37260.1 46.667 75 36 3 262 334 166 238 3.37e-14 74.7
Msa0501780 AT2G46130.2 41.837 98 49 3 234 331 3 92 2.37e-17 78.2
Msa0501780 AT3G58710.1 51.429 70 34 0 252 321 62 131 2.54e-17 82.4
Msa0501780 AT3G58710.2 51.429 70 34 0 252 321 61 130 2.55e-17 82.4
Msa0501780 AT4G31550.2 44.737 76 42 0 243 318 227 302 3.22e-17 83.2
Msa0501780 AT4G31550.1 44.737 76 42 0 243 318 228 303 3.23e-17 83.2
Msa0501780 AT2G24570.1 44.737 76 42 0 243 318 225 300 4.65e-17 82.4
Msa0501780 AT5G52830.1 44.156 77 43 0 255 331 159 235 2.18e-16 80.9
Msa0501780 AT4G31800.3 28.689 244 126 8 66 298 7 213 3.59e-15 75.5
Msa0501780 AT1G69310.3 40.741 81 43 2 238 318 124 199 3.92e-15 76.3
Msa0501780 AT5G45260.1 43.434 99 49 3 240 336 1192 1285 2.13e-14 76.6
Msa0501780 AT5G45050.1 43.678 87 38 1 261 336 1180 1266 6.08e-14 75.1
Msa0501780 AT5G45050.2 43.678 87 38 1 261 336 1152 1238 6.43e-14 75.1
Msa0501780 AT5G45050.4 43.678 87 38 1 261 336 1041 1127 6.73e-14 75.1
Msa0501780 AT5G43290.1 40.244 82 47 2 242 322 94 174 7.68e-14 72.0
Msa0501780 AT2G21900.1 43.548 62 34 1 260 321 108 168 3.49e-13 68.9
Msa0501780 AT2G46400.1 43.210 81 44 1 238 316 81 161 2.76e-12 67.8
Msa0501780 AT3G01080.3 50.000 60 28 2 262 321 206 263 1.22e-11 66.2
Msa0501780 AT2G40740.1 42.500 80 42 2 262 337 174 253 4.64e-11 64.3
Msa0501780 AT2G40740.3 42.500 80 42 2 262 337 183 262 5.97e-11 63.9

Find 82 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACCTCCTTCAACCAATTT+TGG 0.147893 3_4:+43359075 Msa0501780:CDS
ACTATGCTTTATTGCAATTC+TGG 0.191922 3_4:-43359291 None:intergenic
ATAAATTTCTGAGCCAAAAT+TGG 0.226174 3_4:-43359088 None:intergenic
GCTGCATAATATGCTCTTCT+AGG 0.248057 3_4:-43356773 None:intergenic
TCCAAGGCCATTCCTGGAAA+TGG 0.312360 3_4:+43357114 Msa0501780:CDS
GCAGCATCAATGTTACTTTC+AGG 0.317662 3_4:+43358875 Msa0501780:CDS
GGATGTCAATGGAGAAAATA+TGG 0.325975 3_4:+43357974 Msa0501780:CDS
TATGATTCCAAGGCCATTCC+TGG 0.344803 3_4:+43357108 Msa0501780:CDS
GATCCACTTTCTAATATTGT+TGG 0.346118 3_4:-43358929 None:intergenic
GGCAAGATCAGAAGCTAATA+TGG 0.362767 3_4:+43357399 Msa0501780:CDS
AGAAAGCTCGTGTCTCAGTT+AGG 0.368659 3_4:+43357377 Msa0501780:CDS
TTAGTAGGACCATTATTGTT+TGG 0.374768 3_4:-43359253 None:intergenic
TGTACGGTTAGGTCATTAAC+TGG 0.381333 3_4:-43355832 None:intergenic
CCTTAGCAAAACCCATTTCC+AGG 0.390273 3_4:-43357126 None:intergenic
AACAATAATGGTCCTACTAA+TGG 0.392733 3_4:+43359256 Msa0501780:CDS
GTATATACTTGCTTCCGAAC+TGG 0.394378 3_4:-43358064 None:intergenic
ACTTCCAATGATGGAAGTTA+TGG 0.397710 3_4:-43359221 None:intergenic
CCAAGGCCATTCCTGGAAAT+GGG 0.400787 3_4:+43357115 Msa0501780:CDS
AAACCATCTGCACTTGTCAT+TGG 0.402705 3_4:-43358899 None:intergenic
TGCTGAAGATAGAAGTGTTT+TGG 0.402931 3_4:+43358778 Msa0501780:CDS
GCTGCCATAACTTCCATCAT+TGG 0.425352 3_4:+43359217 Msa0501780:CDS
ACTAGAGCAGAAGTGAATTT+CGG 0.430200 3_4:-43359193 None:intergenic
AATTCAAATCCAAACAATAA+TGG 0.432073 3_4:+43359244 Msa0501780:CDS
AAGAATTCACCCTTGGAACT+TGG 0.434846 3_4:-43357315 None:intergenic
TGTTGTTGATGCCATTGCTT+TGG 0.436889 3_4:-43358846 None:intergenic
ATTTGAATTACTTCCAATGA+TGG 0.439445 3_4:-43359230 None:intergenic
GCTCCATTTGGTGTACGGTT+AGG 0.440645 3_4:-43355843 None:intergenic
TCTGAGCCAAAATTGGTTGA+AGG 0.441172 3_4:-43359081 None:intergenic
GCTTATTATCGTTGCACAAT+GGG 0.441190 3_4:+43358031 Msa0501780:CDS
CAAGCAAATAAAGCATTTCA+AGG 0.441399 3_4:+43357280 Msa0501780:CDS
CCCATTTCCAGGAATGGCCT+TGG 0.445899 3_4:-43357115 None:intergenic
GTTTGAGAGAGCTAATTGAT+AGG 0.446725 3_4:+43356730 Msa0501780:CDS
TCTCCACTTGTACCATTAGT+AGG 0.450332 3_4:-43359268 None:intergenic
GTCATTTGCAATGATACTAT+AGG 0.455756 3_4:+43355688 Msa0501780:CDS
CTATCATCCAGTTTGTTGCT+AGG 0.458099 3_4:-43356011 None:intergenic
GATGCCATTGCTTTGGCTGT+TGG 0.463658 3_4:-43358839 None:intergenic
TCCAAGGGTGAATTCTTTCA+AGG 0.464827 3_4:+43357321 Msa0501780:CDS
TGACCTAACCGTACACCAAA+TGG 0.470544 3_4:+43355840 Msa0501780:CDS
TCTAGTGTGATAGTTGGAAA+TGG 0.482456 3_4:-43358995 None:intergenic
CTACGTGATGATGCTCCATT+TGG 0.485074 3_4:-43355855 None:intergenic
CCAAGGGTGAATTCTTTCAA+GGG 0.492785 3_4:+43357322 Msa0501780:CDS
TATACAAGAGAAGATTGAAA+AGG 0.493618 3_4:+43357234 Msa0501780:CDS
GAAAGCTCGTGTCTCAGTTA+GGG 0.497941 3_4:+43357378 Msa0501780:CDS
GTGCAACGATAATAAGCTCT+TGG 0.499916 3_4:-43358025 None:intergenic
TGGGGACTGCTTGTCCAGTT+CGG 0.502808 3_4:+43358050 Msa0501780:CDS
GAGAAAATATGGACAGAAGA+TGG 0.503010 3_4:+43357985 Msa0501780:CDS
GCCATTGCTTTGGCTGTTGG+TGG 0.508626 3_4:-43358836 None:intergenic
TATGGACAGAAGATGGCAAA+GGG 0.509004 3_4:+43357992 Msa0501780:CDS
CGATAATAAGCTCTTGGACA+TGG 0.509444 3_4:-43358019 None:intergenic
AATCCAACAATATTAGAAAG+TGG 0.511191 3_4:+43358926 Msa0501780:CDS
TCTATTAAGTATAGGTTCAA+AGG 0.511735 3_4:+43358753 Msa0501780:intron
GTGAGATCTAGTGTGATAGT+TGG 0.515834 3_4:-43359001 None:intergenic
GCAAAACCCATTTCCAGGAA+TGG 0.518007 3_4:-43357121 None:intergenic
GGCTTTCAAACCAAGTTCCA+AGG 0.521439 3_4:+43357305 Msa0501780:CDS
CCCTTGAAAGAATTCACCCT+TGG 0.522368 3_4:-43357322 None:intergenic
TTATGCAGCTGAAGCAGAAA+CGG 0.537748 3_4:+43356787 Msa0501780:CDS
AGCTTATTATCGTTGCACAA+TGG 0.538266 3_4:+43358030 Msa0501780:CDS
TGGCTGTTGGTGGTAGAGCA+TGG 0.541988 3_4:-43358826 None:intergenic
AGATTTCAGATGGATGTCAA+TGG 0.544482 3_4:+43357963 Msa0501780:intron
AATGTATCACAGATTTCAGA+TGG 0.548456 3_4:+43357953 Msa0501780:intron
ATGATGCTCCATTTGGTGTA+CGG 0.552952 3_4:-43355848 None:intergenic
CTGCATAATATGCTCTTCTA+GGG 0.557538 3_4:-43356772 None:intergenic
ATGGTATGAATATGATTCCA+AGG 0.557677 3_4:+43357098 Msa0501780:CDS
CAAATAAAGCATTTCAAGGG+TGG 0.566998 3_4:+43357284 Msa0501780:CDS
GGACCAATGACAAGTGCAGA+TGG 0.572451 3_4:+43358896 Msa0501780:CDS
GGTCCTACTAATGGTACAAG+TGG 0.573879 3_4:+43359265 Msa0501780:CDS
GAAGCAACTGAAGAAAAGAA+TGG 0.574998 3_4:+43357079 Msa0501780:CDS
GTGTATACAGTATGCTGCTG+TGG 0.578588 3_4:+43356671 Msa0501780:intron
TGATGCAAGGAACGAAAATG+AGG 0.583927 3_4:+43356043 Msa0501780:CDS
GAGCCAAAATTGGTTGAAGG+AGG 0.586653 3_4:-43359078 None:intergenic
ATAGAGAATATTCTGATGCA+AGG 0.587268 3_4:+43356030 Msa0501780:CDS
GTTGCCATGGTGTGTGAACA+AGG 0.603956 3_4:-43358956 None:intergenic
GCTTTCAAACCAAGTTCCAA+GGG 0.616257 3_4:+43357306 Msa0501780:CDS
AAGCAAATAAAGCATTTCAA+GGG 0.619803 3_4:+43357281 Msa0501780:CDS
ACCACCAACAGCCAAAGCAA+TGG 0.628337 3_4:+43358835 Msa0501780:CDS
TGAAGCTGAGAGTGTTGCCA+TGG 0.636245 3_4:-43358969 None:intergenic
ATATGGACAGAAGATGGCAA+AGG 0.645418 3_4:+43357991 Msa0501780:CDS
ACTCCCTTGTTCACACACCA+TGG 0.651056 3_4:+43358952 Msa0501780:CDS
GCAGAAACGGAGTAAACTTG+AGG 0.652579 3_4:+43356800 Msa0501780:CDS
CTTATTATCGTTGCACAATG+GGG 0.668170 3_4:+43358032 Msa0501780:CDS
ATGGACAGAAGATGGCAAAG+GGG 0.709928 3_4:+43357993 Msa0501780:CDS
TTGCCATGGTGTGTGAACAA+GGG 0.728086 3_4:-43358955 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATAAAATTGCAAAA+TGG - chr3_4:43355913-43355932 None:intergenic 10.0%
!! AAAATATATTCTTAATGTAA+AGG - chr3_4:43356646-43356665 None:intergenic 10.0%
!! TAAAAAAAAATAAATAGTGA+AGG + chr3_4:43358266-43358285 Msa0501780:intron 10.0%
!! AAAAAAAAATAAATAGTGAA+GGG + chr3_4:43358267-43358286 Msa0501780:intron 10.0%
!! ATGTAATCAAATTTCATAAA+AGG - chr3_4:43358100-43358119 None:intergenic 15.0%
!!! GTAGTTCAAATATTTTAAAT+TGG + chr3_4:43358175-43358194 Msa0501780:intron 15.0%
!! ATTAAAGTGACATTAATAAT+CGG + chr3_4:43358304-43358323 Msa0501780:intron 15.0%
!! AGTATATAAATCTTTGTTAA+TGG - chr3_4:43358680-43358699 None:intergenic 15.0%
!! TAATGGAAAAAGACTAATTA+TGG + chr3_4:43355774-43355793 Msa0501780:CDS 20.0%
!! AATTACTAAAAGAGCTAATT+TGG + chr3_4:43355933-43355952 Msa0501780:intron 20.0%
!!! TGTTTTGATTTTGTTAAGAA+TGG + chr3_4:43356104-43356123 Msa0501780:intron 20.0%
!!! GAATTGAGTTTTACAAATAT+TGG + chr3_4:43356206-43356225 Msa0501780:intron 20.0%
!! TTCATTCAAATAATCGAAAA+CGG + chr3_4:43356519-43356538 Msa0501780:intron 20.0%
!!! ATTTTTCCTGTAATTAAATC+CGG - chr3_4:43356868-43356887 None:intergenic 20.0%
!!! TAAGATTTTGTACTTACAAA+TGG + chr3_4:43356980-43356999 Msa0501780:intron 20.0%
!!! TAGTATATAGACAAGTTTTA+CGG - chr3_4:43357843-43357862 None:intergenic 20.0%
!!! TACTTTTATGTTCAGTAATT+TGG + chr3_4:43358119-43358138 Msa0501780:intron 20.0%
!!! TATTTGAACTACACTAATTT+TGG - chr3_4:43358167-43358186 None:intergenic 20.0%
!! AAATCTGTACCTTAAAATTA+AGG + chr3_4:43358546-43358565 Msa0501780:intron 20.0%
!!! AGAGTTTAACCTTAATTTTA+AGG - chr3_4:43358558-43358577 None:intergenic 20.0%
!!! TTTTCCATTCCAAAAATATT+TGG - chr3_4:43359121-43359140 None:intergenic 20.0%
!! AATTCAAATCCAAACAATAA+TGG + chr3_4:43359244-43359263 Msa0501780:CDS 20.0%
! AAAAAGACTAATTATGGATG+AGG + chr3_4:43355780-43355799 Msa0501780:CDS 25.0%
!! AAAATGAGGTATGTTTTTCT+TGG + chr3_4:43356057-43356076 Msa0501780:intron 25.0%
!! GAGTTTTACAAATATTGGAT+TGG + chr3_4:43356211-43356230 Msa0501780:intron 25.0%
! TACTTCACAAAAATGTAATG+TGG + chr3_4:43356288-43356307 Msa0501780:intron 25.0%
! ACTTCACAAAAATGTAATGT+GGG + chr3_4:43356289-43356308 Msa0501780:intron 25.0%
!! TAACATTTTTCTTCGCTATA+AGG - chr3_4:43356572-43356591 None:intergenic 25.0%
! TAGCGAAGAAAAATGTTATT+TGG + chr3_4:43356574-43356593 Msa0501780:intron 25.0%
! CTAGTTTAATGACTAACATA+TGG + chr3_4:43357031-43357050 Msa0501780:intron 25.0%
! TAATGACTAACATATGGATT+TGG + chr3_4:43357037-43357056 Msa0501780:intron 25.0%
! TATACAAGAGAAGATTGAAA+AGG + chr3_4:43357234-43357253 Msa0501780:CDS 25.0%
!! AAGCAAATAAAGCATTTCAA+GGG + chr3_4:43357281-43357300 Msa0501780:CDS 25.0%
!!! TTAACAAGTTTTAGCATAGA+TGG + chr3_4:43357503-43357522 Msa0501780:intron 25.0%
!!! CGCTATTTCAACTTTTATAT+CGG - chr3_4:43357547-43357566 None:intergenic 25.0%
! TATAAAAGTTGAAATAGCGA+CGG + chr3_4:43357548-43357567 Msa0501780:intron 25.0%
!!! TTAATGTTTTGGACAAGTTT+TGG + chr3_4:43357774-43357793 Msa0501780:intron 25.0%
!!! TTACAAAGATTTGTTCCTTT+TGG + chr3_4:43358212-43358231 Msa0501780:intron 25.0%
! GTTATATATCCATGGAAAAA+TGG + chr3_4:43358337-43358356 Msa0501780:intron 25.0%
! AGTTACTCATCATTCTTTAA+AGG + chr3_4:43358472-43358491 Msa0501780:intron 25.0%
!!! ATATTTTTACAACCTTTGAG+AGG + chr3_4:43358518-43358537 Msa0501780:intron 25.0%
! TTGATCAAATTTCTCTACTT+AGG - chr3_4:43358644-43358663 None:intergenic 25.0%
! TGTATGCTTCTATTAAGTAT+AGG + chr3_4:43358745-43358764 Msa0501780:intron 25.0%
! TCTATTAAGTATAGGTTCAA+AGG + chr3_4:43358753-43358772 Msa0501780:intron 25.0%
! AATCCAACAATATTAGAAAG+TGG + chr3_4:43358926-43358945 Msa0501780:CDS 25.0%
! ATAAATTTCTGAGCCAAAAT+TGG - chr3_4:43359091-43359110 None:intergenic 25.0%
! ATTTGAATTACTTCCAATGA+TGG - chr3_4:43359233-43359252 None:intergenic 25.0%
GTCATTTGCAATGATACTAT+AGG + chr3_4:43355688-43355707 Msa0501780:CDS 30.0%
! TCTCAAGTCATGTCTTTTAA+TGG + chr3_4:43355757-43355776 Msa0501780:CDS 30.0%
TTTGTTGCTAGGAAAAATCT+TGG - chr3_4:43356003-43356022 None:intergenic 30.0%
ATAGAGAATATTCTGATGCA+AGG + chr3_4:43356030-43356049 Msa0501780:CDS 30.0%
AAAGAAGAATGATCATGTGA+TGG - chr3_4:43356185-43356204 None:intergenic 30.0%
CGAAGTTAAACACAAAACTA+CGG + chr3_4:43356319-43356338 Msa0501780:intron 30.0%
AGTTACCTAATATACGTTCA+TGG - chr3_4:43356447-43356466 None:intergenic 30.0%
!!! AACAATTTTGTTGTTCGACA+AGG + chr3_4:43356599-43356618 Msa0501780:intron 30.0%
!! AAAAAATCAACTAGTTCTGC+CGG + chr3_4:43356846-43356865 Msa0501780:intron 30.0%
ATGGTATGAATATGATTCCA+AGG + chr3_4:43357098-43357117 Msa0501780:CDS 30.0%
!!! ATGTTTTTTCTCTCTTGTGA+AGG - chr3_4:43357157-43357176 None:intergenic 30.0%
TTCACAAGAGAGAAAAAACA+TGG + chr3_4:43357156-43357175 Msa0501780:CDS 30.0%
!! AAAAAACATGGTTGACTTGA+TGG + chr3_4:43357168-43357187 Msa0501780:CDS 30.0%
! CAAGCAAATAAAGCATTTCA+AGG + chr3_4:43357280-43357299 Msa0501780:CDS 30.0%
TTCAGTCGTTATGTCAAATT+TGG + chr3_4:43357648-43357667 Msa0501780:intron 30.0%
!! CACTGGTTTGAAAATCTTAA+GGG - chr3_4:43357698-43357717 None:intergenic 30.0%
! TTTGGACAATTTTCAAACAC+CGG + chr3_4:43357792-43357811 Msa0501780:intron 30.0%
AGTTTGATAAATGTTGTGAC+CGG - chr3_4:43357814-43357833 None:intergenic 30.0%
! TATATAGACAAGTTTTACGG+CGG - chr3_4:43357840-43357859 None:intergenic 30.0%
AATGTATCACAGATTTCAGA+TGG + chr3_4:43357953-43357972 Msa0501780:intron 30.0%
TTTCCATGGATATATAACCT+AGG - chr3_4:43358335-43358354 None:intergenic 30.0%
!! AATTACTCACCATTTTTCCA+TGG - chr3_4:43358349-43358368 None:intergenic 30.0%
TGTGACTAATGTTCATTGAT+CGG - chr3_4:43358375-43358394 None:intergenic 30.0%
! AAAGACTCGTTTTCATTTGT+TGG + chr3_4:43358443-43358462 Msa0501780:intron 30.0%
AATATGTTTATATGTCCACG+AGG - chr3_4:43358598-43358617 None:intergenic 30.0%
!! GTTTTGGTAACAACATATGA+AGG + chr3_4:43358794-43358813 Msa0501780:CDS 30.0%
GATCCACTTTCTAATATTGT+TGG - chr3_4:43358932-43358951 None:intergenic 30.0%
! ATGTCAGCTCCAAATATTTT+TGG + chr3_4:43359109-43359128 Msa0501780:CDS 30.0%
!!! AGCTCCAAATATTTTTGGAA+TGG + chr3_4:43359114-43359133 Msa0501780:CDS 30.0%
TTAGTAGGACCATTATTGTT+TGG - chr3_4:43359256-43359275 None:intergenic 30.0%
AACAATAATGGTCCTACTAA+TGG + chr3_4:43359256-43359275 Msa0501780:CDS 30.0%
GAAGAAGAAGAAGAAGAATG+TGG - chr3_4:43355736-43355755 None:intergenic 35.0%
! GATTTTTCCTAGCAACAAAC+TGG + chr3_4:43356004-43356023 Msa0501780:CDS 35.0%
CTACACCATGAACGTATATT+AGG + chr3_4:43356439-43356458 Msa0501780:intron 35.0%
TCGCTATAAGGCTTATTCTA+GGG - chr3_4:43356560-43356579 None:intergenic 35.0%
TTCGCTATAAGGCTTATTCT+AGG - chr3_4:43356561-43356580 None:intergenic 35.0%
!! GTTGATTTTCAGCATTCGTT+TGG - chr3_4:43356710-43356729 None:intergenic 35.0%
GTTTGAGAGAGCTAATTGAT+AGG + chr3_4:43356730-43356749 Msa0501780:CDS 35.0%
CTGCATAATATGCTCTTCTA+GGG - chr3_4:43356775-43356794 None:intergenic 35.0%
CTTGAACATATAACGATGAG+TGG - chr3_4:43357007-43357026 None:intergenic 35.0%
GAAGCAACTGAAGAAAAGAA+TGG + chr3_4:43357079-43357098 Msa0501780:CDS 35.0%
! CAAATAAAGCATTTCAAGGG+TGG + chr3_4:43357284-43357303 Msa0501780:CDS 35.0%
! TTTTAGCATAGATGGCTAGT+TGG + chr3_4:43357511-43357530 Msa0501780:intron 35.0%
TTGAAATAGCGACGGAAAAA+AGG + chr3_4:43357556-43357575 Msa0501780:intron 35.0%
TTTGGTGAATTCCCTTAAGT+TGG + chr3_4:43357666-43357685 Msa0501780:intron 35.0%
AAGGGAATTCACCAACTTAA+GGG - chr3_4:43357680-43357699 None:intergenic 35.0%
TAAGGGAATTCACCAACTTA+AGG - chr3_4:43357681-43357700 None:intergenic 35.0%
!! GCACTGGTTTGAAAATCTTA+AGG - chr3_4:43357699-43357718 None:intergenic 35.0%
! ACTTAAAAGAGAGACTTGGT+TGG - chr3_4:43357721-43357740 None:intergenic 35.0%
CACTACTTAAAAGAGAGACT+TGG - chr3_4:43357725-43357744 None:intergenic 35.0%
!! AGTCTCTCTTTTAAGTAGTG+TGG + chr3_4:43357725-43357744 Msa0501780:intron 35.0%
AGATTTCAGATGGATGTCAA+TGG + chr3_4:43357963-43357982 Msa0501780:intron 35.0%
GGATGTCAATGGAGAAAATA+TGG + chr3_4:43357974-43357993 Msa0501780:CDS 35.0%
GAGAAAATATGGACAGAAGA+TGG + chr3_4:43357985-43358004 Msa0501780:CDS 35.0%
AGCTTATTATCGTTGCACAA+TGG + chr3_4:43358030-43358049 Msa0501780:CDS 35.0%
GCTTATTATCGTTGCACAAT+GGG + chr3_4:43358031-43358050 Msa0501780:CDS 35.0%
CTTATTATCGTTGCACAATG+GGG + chr3_4:43358032-43358051 Msa0501780:CDS 35.0%
AGTCTATATGAGTGACCAAA+AGG - chr3_4:43358230-43358249 None:intergenic 35.0%
ATTAATAATCGGTGACACCT+AGG + chr3_4:43358315-43358334 Msa0501780:intron 35.0%
ACACCTAGGTTATATATCCA+TGG + chr3_4:43358329-43358348 Msa0501780:intron 35.0%
GTGACTAATGTTCATTGATC+GGG - chr3_4:43358374-43358393 None:intergenic 35.0%
AAAACGAGTCTTTGTTAGTG+GGG - chr3_4:43358436-43358455 None:intergenic 35.0%
GAAAACGAGTCTTTGTTAGT+GGG - chr3_4:43358437-43358456 None:intergenic 35.0%
TGAAAACGAGTCTTTGTTAG+TGG - chr3_4:43358438-43358457 None:intergenic 35.0%
CAGATTTCAAATCCTCTCAA+AGG - chr3_4:43358533-43358552 None:intergenic 35.0%
!!! TGCTGAAGATAGAAGTGTTT+TGG + chr3_4:43358778-43358797 Msa0501780:CDS 35.0%
TCTAGTGTGATAGTTGGAAA+TGG - chr3_4:43358998-43359017 None:intergenic 35.0%
! TAACCTCCTTCAACCAATTT+TGG + chr3_4:43359075-43359094 Msa0501780:CDS 35.0%
ACTAGAGCAGAAGTGAATTT+CGG - chr3_4:43359196-43359215 None:intergenic 35.0%
! ACTTCCAATGATGGAAGTTA+TGG - chr3_4:43359224-43359243 None:intergenic 35.0%
TGTACGGTTAGGTCATTAAC+TGG - chr3_4:43355835-43355854 None:intergenic 40.0%
!! ATGATGCTCCATTTGGTGTA+CGG - chr3_4:43355851-43355870 None:intergenic 40.0%
!! CTATCATCCAGTTTGTTGCT+AGG - chr3_4:43356014-43356033 None:intergenic 40.0%
TGATGCAAGGAACGAAAATG+AGG + chr3_4:43356043-43356062 Msa0501780:CDS 40.0%
TGTAGAAAACCTGGACTGTT+AGG - chr3_4:43356424-43356443 None:intergenic 40.0%
AGCAGCATACTGTATACACA+AGG - chr3_4:43356670-43356689 None:intergenic 40.0%
GCTGCATAATATGCTCTTCT+AGG - chr3_4:43356776-43356795 None:intergenic 40.0%
TTATGCAGCTGAAGCAGAAA+CGG + chr3_4:43356787-43356806 Msa0501780:CDS 40.0%
GTTCTGCCGGATTTAATTAC+AGG + chr3_4:43356859-43356878 Msa0501780:intron 40.0%
!! CTGGAAATGGGTTTTGCTAA+GGG + chr3_4:43357127-43357146 Msa0501780:CDS 40.0%
GCTTTCAAACCAAGTTCCAA+GGG + chr3_4:43357306-43357325 Msa0501780:CDS 40.0%
AAGAATTCACCCTTGGAACT+TGG - chr3_4:43357318-43357337 None:intergenic 40.0%
TCCAAGGGTGAATTCTTTCA+AGG + chr3_4:43357321-43357340 Msa0501780:CDS 40.0%
CCAAGGGTGAATTCTTTCAA+GGG + chr3_4:43357322-43357341 Msa0501780:CDS 40.0%
GGCAAGATCAGAAGCTAATA+TGG + chr3_4:43357399-43357418 Msa0501780:CDS 40.0%
ATATGGACAGAAGATGGCAA+AGG + chr3_4:43357991-43358010 Msa0501780:CDS 40.0%
TATGGACAGAAGATGGCAAA+GGG + chr3_4:43357992-43358011 Msa0501780:CDS 40.0%
CGATAATAAGCTCTTGGACA+TGG - chr3_4:43358022-43358041 None:intergenic 40.0%
GTGCAACGATAATAAGCTCT+TGG - chr3_4:43358028-43358047 None:intergenic 40.0%
GTATATACTTGCTTCCGAAC+TGG - chr3_4:43358067-43358086 None:intergenic 40.0%
TGTTGTTGATGCCATTGCTT+TGG - chr3_4:43358849-43358868 None:intergenic 40.0%
!! GCAGCATCAATGTTACTTTC+AGG + chr3_4:43358875-43358894 Msa0501780:CDS 40.0%
AAACCATCTGCACTTGTCAT+TGG - chr3_4:43358902-43358921 None:intergenic 40.0%
GTGAGATCTAGTGTGATAGT+TGG - chr3_4:43359004-43359023 None:intergenic 40.0%
TCTGAGCCAAAATTGGTTGA+AGG - chr3_4:43359084-43359103 None:intergenic 40.0%
TCTCCACTTGTACCATTAGT+AGG - chr3_4:43359271-43359290 None:intergenic 40.0%
TGACCTAACCGTACACCAAA+TGG + chr3_4:43355840-43355859 Msa0501780:CDS 45.0%
! CTACGTGATGATGCTCCATT+TGG - chr3_4:43355858-43355877 None:intergenic 45.0%
CGTTCATGGTGTAGAAAACC+TGG - chr3_4:43356433-43356452 None:intergenic 45.0%
GTGTATACAGTATGCTGCTG+TGG + chr3_4:43356671-43356690 Msa0501780:intron 45.0%
GCAGAAACGGAGTAAACTTG+AGG + chr3_4:43356800-43356819 Msa0501780:CDS 45.0%
TATGATTCCAAGGCCATTCC+TGG + chr3_4:43357108-43357127 Msa0501780:CDS 45.0%
GCAAAACCCATTTCCAGGAA+TGG - chr3_4:43357124-43357143 None:intergenic 45.0%
CCTTAGCAAAACCCATTTCC+AGG - chr3_4:43357129-43357148 None:intergenic 45.0%
!! CCTGGAAATGGGTTTTGCTA+AGG + chr3_4:43357126-43357145 Msa0501780:CDS 45.0%
GGCTTTCAAACCAAGTTCCA+AGG + chr3_4:43357305-43357324 Msa0501780:CDS 45.0%
CCCTTGAAAGAATTCACCCT+TGG - chr3_4:43357325-43357344 None:intergenic 45.0%
AGAAAGCTCGTGTCTCAGTT+AGG + chr3_4:43357377-43357396 Msa0501780:CDS 45.0%
GAAAGCTCGTGTCTCAGTTA+GGG + chr3_4:43357378-43357397 Msa0501780:CDS 45.0%
! GGACGGCGTCATTAATGTTT+TGG + chr3_4:43357763-43357782 Msa0501780:intron 45.0%
ATGGACAGAAGATGGCAAAG+GGG + chr3_4:43357993-43358012 Msa0501780:CDS 45.0%
TTGCCATGGTGTGTGAACAA+GGG - chr3_4:43358958-43358977 None:intergenic 45.0%
GAGCCAAAATTGGTTGAAGG+AGG - chr3_4:43359081-43359100 None:intergenic 45.0%
GCTGCCATAACTTCCATCAT+TGG + chr3_4:43359217-43359236 Msa0501780:CDS 45.0%
GGTCCTACTAATGGTACAAG+TGG + chr3_4:43359265-43359284 Msa0501780:CDS 45.0%
!! AAAAAGTAATTTAATTATAT+TGG + chr3_4:43356937-43356956 Msa0501780:intron 5.0%
!! GCTCCATTTGGTGTACGGTT+AGG - chr3_4:43355846-43355865 None:intergenic 50.0%
AACCTGGACTGTTAGGTGTC+AGG - chr3_4:43356417-43356436 None:intergenic 50.0%
TCCAAGGCCATTCCTGGAAA+TGG + chr3_4:43357114-43357133 Msa0501780:CDS 50.0%
CCAAGGCCATTCCTGGAAAT+GGG + chr3_4:43357115-43357134 Msa0501780:CDS 50.0%
! AAGAGAGACTTGGTTGGCAC+TGG - chr3_4:43357715-43357734 None:intergenic 50.0%
GTGTGGACCTCTACTTCTAG+AGG + chr3_4:43357742-43357761 Msa0501780:intron 50.0%
! GGACCTCTACTTCTAGAGGA+CGG + chr3_4:43357746-43357765 Msa0501780:intron 50.0%
GTCTTTGTTAGTGGGGTCGA+TGG - chr3_4:43358429-43358448 None:intergenic 50.0%
ACCACTTAGCTTAGACCTCG+TGG + chr3_4:43358580-43358599 Msa0501780:intron 50.0%
TCCACGAGGTCTAAGCTAAG+TGG - chr3_4:43358584-43358603 None:intergenic 50.0%
ACCACCAACAGCCAAAGCAA+TGG + chr3_4:43358835-43358854 Msa0501780:CDS 50.0%
GATGCCATTGCTTTGGCTGT+TGG - chr3_4:43358842-43358861 None:intergenic 50.0%
GGACCAATGACAAGTGCAGA+TGG + chr3_4:43358896-43358915 Msa0501780:CDS 50.0%
ACTCCCTTGTTCACACACCA+TGG + chr3_4:43358952-43358971 Msa0501780:CDS 50.0%
GTTGCCATGGTGTGTGAACA+AGG - chr3_4:43358959-43358978 None:intergenic 50.0%
!! TGAAGCTGAGAGTGTTGCCA+TGG - chr3_4:43358972-43358991 None:intergenic 50.0%
CCCATTTCCAGGAATGGCCT+TGG - chr3_4:43357118-43357137 None:intergenic 55.0%
! ACGCCGTCCTCTAGAAGTAG+AGG - chr3_4:43357752-43357771 None:intergenic 55.0%
TGGGGACTGCTTGTCCAGTT+CGG + chr3_4:43358050-43358069 Msa0501780:CDS 55.0%
GTGGGGTCGATGGTAGTTTG+TGG - chr3_4:43358419-43358438 None:intergenic 55.0%
!! TGGCTGTTGGTGGTAGAGCA+TGG - chr3_4:43358829-43358848 None:intergenic 55.0%
GCCATTGCTTTGGCTGTTGG+TGG - chr3_4:43358839-43358858 None:intergenic 55.0%
CGCCTGACACCTAACAGTCC+AGG + chr3_4:43356412-43356431 Msa0501780:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 43355679 43359312 43355679 ID=Msa0501780;Name=Msa0501780
chr3_4 mRNA 43355679 43359312 43355679 ID=Msa0501780-mRNA-1;Parent=Msa0501780;Name=Msa0501780-mRNA-1;_AED=0.02;_eAED=0.03;_QI=0|0|0|1|1|1|6|0|478
chr3_4 exon 43355679 43355879 43355679 ID=Msa0501780-mRNA-1:exon:9174;Parent=Msa0501780-mRNA-1
chr3_4 exon 43355981 43356064 43355981 ID=Msa0501780-mRNA-1:exon:9175;Parent=Msa0501780-mRNA-1
chr3_4 exon 43356681 43356821 43356681 ID=Msa0501780-mRNA-1:exon:9176;Parent=Msa0501780-mRNA-1
chr3_4 exon 43357070 43357420 43357070 ID=Msa0501780-mRNA-1:exon:9177;Parent=Msa0501780-mRNA-1
chr3_4 exon 43357965 43358078 43357965 ID=Msa0501780-mRNA-1:exon:9178;Parent=Msa0501780-mRNA-1
chr3_4 exon 43358767 43359312 43358767 ID=Msa0501780-mRNA-1:exon:9179;Parent=Msa0501780-mRNA-1
chr3_4 CDS 43355679 43355879 43355679 ID=Msa0501780-mRNA-1:cds;Parent=Msa0501780-mRNA-1
chr3_4 CDS 43355981 43356064 43355981 ID=Msa0501780-mRNA-1:cds;Parent=Msa0501780-mRNA-1
chr3_4 CDS 43356681 43356821 43356681 ID=Msa0501780-mRNA-1:cds;Parent=Msa0501780-mRNA-1
chr3_4 CDS 43357070 43357420 43357070 ID=Msa0501780-mRNA-1:cds;Parent=Msa0501780-mRNA-1
chr3_4 CDS 43357965 43358078 43357965 ID=Msa0501780-mRNA-1:cds;Parent=Msa0501780-mRNA-1
chr3_4 CDS 43358767 43359312 43358767 ID=Msa0501780-mRNA-1:cds;Parent=Msa0501780-mRNA-1
Gene Sequence

>Msa0501780

ATGGAAGAAGTCATTTGCAATGATACTATAGGAAATTCTAGTGTTGTTGAAGTTCCACATTCTTCTTCTTCTTCTTCTTCTCAAGTCATGTCTTTTAATGGAAAAAGACTAATTATGGATGAGGTTGATTTCTTTGCAGAGAAGAAAATGAGTCCAGTTAATGACCTAACCGTACACCAAATGGAGCATCATCACGTAGATACTAGTTTAGATCTTCTCACCAAGATTTTTCCTAGCAACAAACTGGATGATAGAGAATATTCTGATGCAAGGAACGAAAATGAGTATGCTGCTGTGGTAGCTAAATTGCACCAAACGAATGCTGAAAATCAACGTTTGAGAGAGCTAATTGATAGGCTTAGAATTGATCACAATGCCCTAGAAGAGCATATTATGCAGCTGAAGCAGAAACGGAGTAAACTTGAGATTAATGATGAAGCAACTGAAGAAAAGAATGGTATGAATATGATTCCAAGGCCATTCCTGGAAATGGGTTTTGCTAAGGGTGAGCCTTCACAAGAGAGAAAAAACATGGTTGACTTGATGGAGTGCGATAAAAAGAGTACTCAAAAGTTTTGCAATAATGAAATTATACAAGAGAAGATTGAAAAGGAAGAAGATCATCATGAGAATTCACAAGCAAATAAAGCATTTCAAGGGTGGCTTTCAAACCAAGTTCCAAGGGTGAATTCTTTCAAGGGTGTTGATGATCAAGCATCAGAATCAATGATTAAGAAAGCTCGTGTCTCAGTTAGGGCAAGATCAGAAGCTAATATGATTTCAGATGGATGTCAATGGAGAAAATATGGACAGAAGATGGCAAAGGGGAATCCATGTCCAAGAGCTTATTATCGTTGCACAATGGGGACTGCTTGTCCAGTTCGGAAGCAAGTTCAAAGGTGTGCTGAAGATAGAAGTGTTTTGGTAACAACATATGAAGGACAACATAACCATGCTCTACCACCAACAGCCAAAGCAATGGCATCAACAACAACATCAGCAGCATCAATGTTACTTTCAGGACCAATGACAAGTGCAGATGGTTTAATAAATCCAACAATATTAGAAAGTGGATCACTCCCTTGTTCACACACCATGGCAACACTCTCAGCTTCAGCTCCATTTCCAACTATCACACTAGATCTCACTGAAGAAGCTATCAATAATTCATCACAAAAACAACTACAACAAAGTCAATTTAACCTCCTTCAACCAATTTTGGCTCAGAAATTTATGTCAGCTCCAAATATTTTTGGAATGGAAAATGCTTCATTTGCTGATACAGTTAGTGCTGCAACAGCTGCTATGACTTCTGATCCGAAATTCACTTCTGCTCTAGTTGCTGCCATAACTTCCATCATTGGAAGTAATTCAAATCCAAACAATAATGGTCCTACTAATGGTACAAGTGGAGACCAGAATTGCAATAAAGCATAG
Protein sequence

>Msa0501780

MEEVICNDTIGNSSVVEVPHSSSSSSSQVMSFNGKRLIMDEVDFFAEKKMSPVNDLTVHQMEHHHVDTSLDLLTKIFPSNKLDDREYSDARNENEYAAVVAKLHQTNAENQRLRELIDRLRIDHNALEEHIMQLKQKRSKLEINDEATEEKNGMNMIPRPFLEMGFAKGEPSQERKNMVDLMECDKKSTQKFCNNEIIQEKIEKEEDHHENSQANKAFQGWLSNQVPRVNSFKGVDDQASESMIKKARVSVRARSEANMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGTACPVRKQVQRCAEDRSVLVTTYEGQHNHALPPTAKAMASTTTSAASMLLSGPMTSADGLINPTILESGSLPCSHTMATLSASAPFPTITLDLTEEAINNSSQKQLQQSQFNLLQPILAQKFMSAPNIFGMENASFADTVSAATAAMTSDPKFTSALVAAITSIIGSNSNPNNNGPTNGTSGDQNCNKA*