AlfalfaGEDB | Msa0502020

M. sativa cultivar zhongmu-4 / Msa0502020

KEGG: K02202
GO: GO:0000428 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016591 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032806 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070985 GO:0071704 GO:0080090 GO:0090575 GO:0097472 GO:0140096 GO:1901564 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502020	XP_013459886.1	94.924	394	20	0	1	394	1	394	0.0	781

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502020	sp\|Q9LMT0\|CDKD3_ARATH	64.962	391	112	5	8	394	6	375	0.0	512

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502020	A0A072UWF7	94.924	394	20	0	1	394	1	394	0.0	781

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502020	MtrunA17_Chr3g0099951	94.924	394	20	0	1	394	1	394	0.0	781
Msa0502020	MtrunA17_Chr6g0483151	74.121	398	97	2	1	394	1	396	0.0	606
Msa0502020	MtrunA17_Chr2g0293491	44.291	289	154	5	12	296	2	287	2.32e-76	238
Msa0502020	MtrunA17_Chr4g0051261	44.816	299	138	6	12	296	2	287	7.19e-76	237
Msa0502020	MtrunA17_Chr3g0093571	41.875	320	161	6	12	310	23	338	6.70e-74	239
Msa0502020	MtrunA17_Chr3g0093391	41.066	319	165	5	12	310	21	336	1.13e-72	236
Msa0502020	MtrunA17_Chr4g0057791	37.778	315	174	6	4	302	209	517	4.57e-71	232
Msa0502020	MtrunA17_Chr2g0286421	40.823	316	169	9	11	316	99	406	3.42e-68	224
Msa0502020	MtrunA17_Chr4g0002001	40.391	307	160	7	12	298	2	305	1.19e-67	216
Msa0502020	MtrunA17_Chr8g0358921	41.869	289	154	7	18	296	51	335	1.65e-67	217

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502020	AT1G18040.1	64.962	391	112	5	8	394	6	375	0.0	512
Msa0502020	AT1G73690.1	64.872	390	122	5	8	394	5	382	0.0	508
Msa0502020	AT1G66750.1	67.761	335	98	2	11	337	10	342	8.65e-165	466
Msa0502020	AT3G48750.1	45.734	293	144	5	12	296	2	287	1.05e-77	242
Msa0502020	AT5G64960.1	41.379	319	162	5	12	309	24	338	3.11e-75	243
Msa0502020	AT5G10270.1	40.752	319	164	5	12	309	24	338	8.62e-73	236
Msa0502020	AT1G67580.1	38.801	317	174	6	7	309	400	710	1.08e-71	239
Msa0502020	AT1G67580.2	38.801	317	174	6	7	309	400	710	1.08e-71	239
Msa0502020	AT1G76540.1	41.722	302	158	6	12	300	12	308	1.80e-71	227
Msa0502020	AT1G20930.1	41.100	309	166	6	4	300	6	310	1.81e-70	224

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Find 103 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAACCTGGGTATCAA+TGG	0.487772	3_4:+44003071	None:intergenic
AAAATTTAGTGAATTTGGTG+TGG	0.542852	3_4:+43998807	None:intergenic
AAACCAAACAACTTGTTGAT+AGG	0.371842	3_4:-44000685	Msa0502020:CDS
AAACTCCATGCACTGATGCA+AGG	0.618269	3_4:+43998009	None:intergenic
AAAGCATCATCACTTGCCAT+TGG	0.534955	3_4:+43999223	None:intergenic
AAATTTAGTGAATTTGGTGT+GGG	0.516711	3_4:+43998808	None:intergenic
AACTTGTTGATAGGACAAAA+TGG	0.313019	3_4:-44000676	Msa0502020:CDS
AAGCGCGAAGTTCTCGGAGA+AGG	0.573927	3_4:-44003117	Msa0502020:CDS
AATAAGATTGATGATAATGT+TGG	0.483348	3_4:-43998874	Msa0502020:CDS
AATGAGAAATATTGCTTACC+TGG	0.520658	3_4:+43998744	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGATGAAAAAGAAACCT+GGG	+	chr3_4:43997497-43997516	None:intergenic	30.0%
AAAAGGATGAAAAAGAAACC+TGG	+	chr3_4:43997498-43997517	None:intergenic	30.0%
TTTATATTGAACCTTTGAGC+AGG	-	chr3_4:43997624-43997643	Msa0502020:intron	30.0%
TTATATTGAACCTTTGAGCA+GGG	-	chr3_4:43997625-43997644	Msa0502020:intron	30.0%
CTAAAAAAATCAGCTTGGTT+TGG	+	chr3_4:43997688-43997707	None:intergenic	30.0%
AAGAAAGGAAAAGTCTTTGT+AGG	-	chr3_4:43997716-43997735	Msa0502020:intron	30.0%
AACAACATACAATAACAGAG+TGG	+	chr3_4:43997961-43997980	None:intergenic	30.0%
GACACATTTGAGAATGTTTA+TGG	-	chr3_4:43998681-43998700	Msa0502020:intron	30.0%
AACAAATTGCATGAACTCTA+AGG	+	chr3_4:43998821-43998840	None:intergenic	30.0%
GTGATGCAAATCTAATAGTA+AGG	-	chr3_4:43998853-43998872	Msa0502020:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	43997382	44003196	43997382	ID=Msa0502020;Name=Msa0502020
chr3_4	mRNA	43997382	44003196	43997382	ID=Msa0502020-mRNA-1;Parent=Msa0502020;Name=Msa0502020-mRNA-1;_AED=0.03;_eAED=0.03;_QI=12\|1\|0.87\|1\|0.71\|0.62\|8\|437\|395
chr3_4	exon	43997382	43997425	43997382	ID=Msa0502020-mRNA-1:exon:9380;Parent=Msa0502020-mRNA-1
chr3_4	exon	43997728	43998092	43997728	ID=Msa0502020-mRNA-1:exon:9379;Parent=Msa0502020-mRNA-1
chr3_4	exon	43998731	43999065	43998731	ID=Msa0502020-mRNA-1:exon:9378;Parent=Msa0502020-mRNA-1
chr3_4	exon	43999151	43999386	43999151	ID=Msa0502020-mRNA-1:exon:9377;Parent=Msa0502020-mRNA-1
chr3_4	exon	43999814	43999939	43999814	ID=Msa0502020-mRNA-1:exon:9376;Parent=Msa0502020-mRNA-1
chr3_4	exon	44000606	44000714	44000606	ID=Msa0502020-mRNA-1:exon:9375;Parent=Msa0502020-mRNA-1
chr3_4	exon	44000797	44001101	44000797	ID=Msa0502020-mRNA-1:exon:9374;Parent=Msa0502020-mRNA-1
chr3_4	exon	44003080	44003196	44003080	ID=Msa0502020-mRNA-1:exon:9373;Parent=Msa0502020-mRNA-1
chr3_4	five_prime_UTR	44003185	44003196	44003185	ID=Msa0502020-mRNA-1:five_prime_utr;Parent=Msa0502020-mRNA-1
chr3_4	CDS	44003080	44003184	44003080	ID=Msa0502020-mRNA-1:cds;Parent=Msa0502020-mRNA-1
chr3_4	CDS	44000797	44001101	44000797	ID=Msa0502020-mRNA-1:cds;Parent=Msa0502020-mRNA-1
chr3_4	CDS	44000606	44000714	44000606	ID=Msa0502020-mRNA-1:cds;Parent=Msa0502020-mRNA-1
chr3_4	CDS	43999814	43999939	43999814	ID=Msa0502020-mRNA-1:cds;Parent=Msa0502020-mRNA-1
chr3_4	CDS	43999151	43999386	43999151	ID=Msa0502020-mRNA-1:cds;Parent=Msa0502020-mRNA-1
chr3_4	CDS	43998759	43999065	43998759	ID=Msa0502020-mRNA-1:cds;Parent=Msa0502020-mRNA-1
chr3_4	three_prime_UTR	43998731	43998758	43998731	ID=Msa0502020-mRNA-1:three_prime_utr;Parent=Msa0502020-mRNA-1
chr3_4	three_prime_UTR	43997728	43998092	43997728	ID=Msa0502020-mRNA-1:three_prime_utr;Parent=Msa0502020-mRNA-1
chr3_4	three_prime_UTR	43997382	43997425	43997382	ID=Msa0502020-mRNA-1:three_prime_utr;Parent=Msa0502020-mRNA-1

Gene Sequence

>Msa0502020

ATGGCAGAAGTGAATCCGTGTAAAAAACTAGCAGACAGGTATCTGAAGCGCGAAGTTCTCGGAGAAGGTACCTATGGTGTCGTGTTCAAAGCCATTGATACCCAGACCGGACAAATGGTTGCAATTAAGAAGATTCGGAAACGGATTGATGAGCTGCTGGACGGGGTGAATTTTACAGCTCTTAGAGAAATCAAACTTCTCAAAGAGCTCAAACATCCAAACATTGTTGATTTGATTGATGTATTCCAATATAAACAGAATTTGCATCTTGTTTTTGAATACATGGAGACAGATCTTGAAGCTGTCATAAGAGACCGAAATATTTTCCTTTCACCGGGTGATATTAAATCTTACCTTCTAATGATACTAAAAGGTCTTGCTTATTGTCACAAAAAATGGGTTTTGCATAGGGATGTGAAACCAAACAACTTGTTGATAGGACAAAATGGACAGCTCAAACTTGCAGATTTTGGTTTATCACAGATATTTGGAGACCCAGAACATGAGTTCCCTGATCAGGCATTTGCTCGGTGGTACAGAGCGCCTGAGCTATTATTTGGTGCCAAGAAGTATGGTTCAGGGGTAGATGTTTGGGCTGCAGCTTGTGTATTTGCTGAACTTCTTCTTCGTAGACCCTTTTTGGAGGGTTCAACTGATACGCATCAAACACGGAAGATTTTCACAGCATTTGGAACCCCATCACCTTCCGAGTGGCCTGATATGACGTACCTTAAATATTATGTTCAAGAAAAATATATTTCTGCTCCCCCGTTGCGTTCTTTATTTCCAATGGCAAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACCTATGATCCAAATGCTAGAATTTCTGCTCAGAAAGCATTAGAACATAGGTACTTTTCTTCTGCACCTCTGCCCACCGATCCAGAAAAGCTTCCAAGACCTGTTCCCAAGAGGGAATCTACGGTCTCAGATCTGAGTTCTGTTCAATTATCACCTTCAAGAAAGATTAGAAGAGTGATGCCTAGGTGTGATGGATTTGAAGGCAATAAGCTGGAAAGAAATAAGATTGATGATAATGTTGGTAATTTCAATCAGACTGTTGGCGATAATGCTGGCACAAATGAGCCCACACCAAATTCACTAAATTTTTCCGTCTTTGGATTAAAACCTCCAAATAGACCAACAATTACCAGGTAA

Protein sequence

>Msa0502020

MAEVNPCKKLADRYLKREVLGEGTYGVVFKAIDTQTGQMVAIKKIRKRIDELLDGVNFTALREIKLLKELKHPNIVDLIDVFQYKQNLHLVFEYMETDLEAVIRDRNIFLSPGDIKSYLLMILKGLAYCHKKWVLHRDVKPNNLLIGQNGQLKLADFGLSQIFGDPEHEFPDQAFARWYRAPELLFGAKKYGSGVDVWAAACVFAELLLRRPFLEGSTDTHQTRKIFTAFGTPSPSEWPDMTYLKYYVQEKYISAPPLRSLFPMASDDALDLLSKMFTYDPNARISAQKALEHRYFSSAPLPTDPEKLPRPVPKRESTVSDLSSVQLSPSRKIRRVMPRCDGFEGNKLERNKIDDNVGNFNQTVGDNAGTNEPTPNSLNFSVFGLKPPNRPTITR*