Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503720 | XP_003600455.1 | 84.507 | 284 | 40 | 2 | 1 | 283 | 1 | 281 | 1.10e-170 | 483 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503720 | sp|Q8L3W1|VRN1_ARATH | 26.686 | 341 | 179 | 11 | 8 | 283 | 1 | 335 | 5.76e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503720 | G8A2Z2 | 84.507 | 284 | 40 | 2 | 1 | 283 | 1 | 281 | 5.25e-171 | 483 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0503720 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503720 | MtrunA17_Chr3g0103181 | 75.618 | 283 | 65 | 2 | 1 | 283 | 1 | 279 | 5.69e-151 | 423 |
| Msa0503720 | MtrunA17_Chr3g0103191 | 80.952 | 252 | 45 | 3 | 1 | 250 | 1 | 251 | 5.19e-141 | 397 |
| Msa0503720 | MtrunA17_Chr3g0103201 | 86.364 | 220 | 29 | 1 | 65 | 283 | 1 | 220 | 2.47e-136 | 384 |
| Msa0503720 | MtrunA17_Chr3g0103171 | 68.966 | 261 | 79 | 1 | 25 | 283 | 5 | 265 | 3.61e-125 | 357 |
| Msa0503720 | MtrunA17_Chr3g0103151 | 77.640 | 161 | 36 | 0 | 1 | 161 | 1 | 161 | 1.68e-88 | 260 |
| Msa0503720 | MtrunA17_Chr3g0103161 | 69.421 | 121 | 37 | 0 | 162 | 282 | 2 | 122 | 3.25e-53 | 169 |
| Msa0503720 | MtrunA17_Chr1g0163071 | 35.714 | 294 | 144 | 10 | 26 | 283 | 2 | 286 | 6.29e-46 | 156 |
| Msa0503720 | MtrunA17_Chr8g0390841 | 33.657 | 309 | 155 | 8 | 10 | 283 | 37 | 330 | 3.37e-45 | 159 |
| Msa0503720 | MtrunA17_Chr8g0390841 | 49.231 | 65 | 32 | 1 | 219 | 283 | 454 | 517 | 4.19e-11 | 63.2 |
| Msa0503720 | MtrunA17_Chr1g0208771 | 33.106 | 293 | 147 | 7 | 25 | 283 | 12 | 289 | 2.36e-41 | 148 |
| Msa0503720 | MtrunA17_Chr1g0208771 | 26.897 | 290 | 161 | 15 | 12 | 283 | 201 | 457 | 4.78e-11 | 62.8 |
| Msa0503720 | MtrunA17_Chr7g0233561 | 32.686 | 309 | 170 | 11 | 5 | 283 | 11 | 311 | 3.88e-41 | 144 |
| Msa0503720 | MtrunA17_Chr3g0131891 | 33.333 | 291 | 174 | 9 | 9 | 283 | 16 | 302 | 1.46e-40 | 143 |
| Msa0503720 | MtrunA17_Chr7g0233521 | 32.472 | 271 | 160 | 7 | 26 | 283 | 2 | 262 | 8.82e-36 | 129 |
| Msa0503720 | MtrunA17_Chr7g0233531 | 30.712 | 267 | 170 | 7 | 26 | 283 | 2 | 262 | 2.82e-30 | 115 |
| Msa0503720 | MtrunA17_Chr7g0233541 | 29.693 | 293 | 156 | 9 | 26 | 283 | 2 | 279 | 5.50e-29 | 112 |
| Msa0503720 | MtrunA17_Chr1g0163131 | 30.645 | 310 | 170 | 12 | 2 | 280 | 8 | 303 | 3.49e-28 | 110 |
| Msa0503720 | MtrunA17_Chr4g0067431 | 29.043 | 303 | 182 | 12 | 10 | 283 | 13 | 311 | 4.03e-28 | 110 |
| Msa0503720 | MtrunA17_Chr1g0163251 | 29.286 | 280 | 179 | 7 | 12 | 282 | 9 | 278 | 1.02e-27 | 110 |
| Msa0503720 | MtrunA17_Chr7g0233571 | 41.176 | 136 | 78 | 1 | 9 | 142 | 7 | 142 | 1.60e-27 | 106 |
| Msa0503720 | MtrunA17_Chr1g0163181 | 30.000 | 300 | 160 | 12 | 14 | 282 | 11 | 291 | 4.84e-27 | 108 |
| Msa0503720 | MtrunA17_Chr5g0419201 | 35.443 | 158 | 82 | 4 | 12 | 157 | 16 | 165 | 3.15e-26 | 102 |
| Msa0503720 | MtrunA17_Chr3g0077451 | 28.897 | 263 | 145 | 6 | 24 | 283 | 10 | 233 | 1.02e-23 | 96.7 |
| Msa0503720 | MtrunA17_Chr1g0163221 | 29.795 | 292 | 177 | 9 | 10 | 283 | 9 | 290 | 2.49e-23 | 97.8 |
| Msa0503720 | MtrunA17_Chr1g0163261 | 26.855 | 283 | 187 | 9 | 9 | 280 | 6 | 279 | 1.07e-22 | 95.1 |
| Msa0503720 | MtrunA17_Chr1g0162441 | 36.957 | 138 | 75 | 3 | 8 | 133 | 1 | 138 | 3.85e-22 | 95.1 |
| Msa0503720 | MtrunA17_Chr4g0033961 | 30.570 | 193 | 109 | 5 | 12 | 194 | 6 | 183 | 6.80e-22 | 94.7 |
| Msa0503720 | MtrunA17_Chr5g0429931 | 28.788 | 264 | 151 | 8 | 25 | 283 | 10 | 241 | 2.04e-21 | 90.5 |
| Msa0503720 | MtrunA17_Chr1g0163201 | 24.911 | 281 | 173 | 7 | 25 | 282 | 18 | 283 | 1.97e-20 | 90.1 |
| Msa0503720 | MtrunA17_Chr1g0163231 | 26.014 | 296 | 173 | 12 | 9 | 282 | 6 | 277 | 5.52e-20 | 87.8 |
| Msa0503720 | MtrunA17_Chr3g0077411 | 27.368 | 285 | 168 | 8 | 10 | 283 | 260 | 516 | 1.99e-19 | 87.8 |
| Msa0503720 | MtrunA17_Chr3g0077411 | 26.866 | 268 | 144 | 7 | 12 | 277 | 25 | 242 | 1.16e-17 | 82.8 |
| Msa0503720 | MtrunA17_Chr1g0154161 | 25.874 | 286 | 188 | 9 | 13 | 283 | 30 | 306 | 6.16e-19 | 85.1 |
| Msa0503720 | MtrunA17_Chr1g0162411 | 41.121 | 107 | 58 | 3 | 7 | 111 | 3 | 106 | 1.86e-18 | 84.7 |
| Msa0503720 | MtrunA17_Chr1g0171611 | 24.296 | 284 | 181 | 8 | 9 | 282 | 6 | 265 | 2.85e-18 | 82.8 |
| Msa0503720 | MtrunA17_Chr3g0077461 | 27.941 | 272 | 143 | 7 | 12 | 277 | 237 | 461 | 3.11e-18 | 84.3 |
| Msa0503720 | MtrunA17_Chr3g0077461 | 41.667 | 84 | 49 | 0 | 25 | 108 | 22 | 105 | 8.28e-16 | 77.0 |
| Msa0503720 | MtrunA17_Chr6g0467351 | 32.051 | 156 | 92 | 3 | 10 | 162 | 13 | 157 | 1.37e-17 | 79.7 |
| Msa0503720 | MtrunA17_Chr1g0154131 | 25.260 | 289 | 194 | 8 | 10 | 280 | 182 | 466 | 1.88e-17 | 82.0 |
| Msa0503720 | MtrunA17_Chr1g0163061 | 42.157 | 102 | 56 | 2 | 10 | 108 | 13 | 114 | 3.57e-17 | 79.3 |
| Msa0503720 | MtrunA17_Chr1g0163191 | 30.435 | 115 | 76 | 2 | 12 | 126 | 9 | 119 | 2.64e-16 | 74.7 |
| Msa0503720 | MtrunA17_Chr3g0077421 | 29.004 | 231 | 121 | 6 | 57 | 283 | 4 | 195 | 4.69e-16 | 75.1 |
| Msa0503720 | MtrunA17_Chr3g0077441 | 29.004 | 231 | 121 | 6 | 57 | 283 | 4 | 195 | 4.69e-16 | 75.1 |
| Msa0503720 | MtrunA17_Chr3g0077431 | 27.826 | 230 | 124 | 6 | 57 | 283 | 4 | 194 | 6.17e-16 | 74.7 |
| Msa0503720 | MtrunA17_Chr1g0163241 | 33.051 | 118 | 68 | 3 | 12 | 126 | 15 | 124 | 1.66e-15 | 72.8 |
| Msa0503720 | MtrunA17_Chr6g0476181 | 39.474 | 114 | 66 | 2 | 26 | 139 | 2 | 112 | 2.21e-15 | 72.0 |
| Msa0503720 | MtrunA17_Chr4g0009491 | 32.231 | 121 | 71 | 1 | 22 | 131 | 237 | 357 | 2.32e-15 | 75.5 |
| Msa0503720 | MtrunA17_Chr4g0009491 | 28.319 | 113 | 81 | 0 | 16 | 128 | 3 | 115 | 1.43e-11 | 64.3 |
| Msa0503720 | MtrunA17_Chr3g0077381 | 31.884 | 138 | 92 | 1 | 13 | 148 | 23 | 160 | 2.96e-15 | 75.5 |
| Msa0503720 | MtrunA17_Chr3g0077381 | 35.644 | 101 | 65 | 0 | 22 | 122 | 259 | 359 | 1.30e-14 | 73.6 |
| Msa0503720 | MtrunA17_Chr1g0163161 | 40.196 | 102 | 52 | 4 | 38 | 133 | 1 | 99 | 7.70e-14 | 67.0 |
| Msa0503720 | MtrunA17_Chr1g0163101 | 31.206 | 141 | 86 | 5 | 2 | 134 | 7 | 144 | 1.05e-13 | 68.2 |
| Msa0503720 | MtrunA17_Chr3g0077361 | 36.634 | 101 | 61 | 2 | 12 | 109 | 40 | 140 | 2.13e-13 | 70.1 |
| Msa0503720 | MtrunA17_Chr1g0163081 | 37.391 | 115 | 62 | 4 | 26 | 134 | 6 | 116 | 4.38e-13 | 65.5 |
| Msa0503720 | MtrunA17_Chr1g0162161 | 27.933 | 179 | 101 | 7 | 26 | 199 | 4 | 159 | 5.00e-13 | 65.5 |
| Msa0503720 | MtrunA17_Chr1g0163121 | 37.069 | 116 | 63 | 4 | 24 | 133 | 9 | 120 | 6.35e-13 | 65.1 |
| Msa0503720 | MtrunA17_Chr1g0154151 | 23.871 | 310 | 185 | 11 | 13 | 282 | 13 | 311 | 1.87e-12 | 66.6 |
| Msa0503720 | MtrunA17_Chr1g0163141 | 37.624 | 101 | 59 | 3 | 24 | 124 | 9 | 105 | 3.87e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503720 | AT3G18990.1 | 26.686 | 341 | 179 | 11 | 8 | 283 | 1 | 335 | 5.86e-30 | 115 |
| Msa0503720 | AT3G18990.2 | 26.686 | 341 | 179 | 11 | 8 | 283 | 1 | 335 | 1.49e-29 | 115 |
| Msa0503720 | AT1G49475.1 | 40.336 | 119 | 67 | 3 | 11 | 127 | 33 | 149 | 1.25e-18 | 82.0 |
| Msa0503720 | AT4G01580.1 | 31.884 | 138 | 86 | 2 | 11 | 146 | 29 | 160 | 2.12e-17 | 78.6 |
| Msa0503720 | AT3G18960.2 | 38.000 | 100 | 60 | 1 | 11 | 108 | 29 | 128 | 9.22e-16 | 74.3 |
| Msa0503720 | AT3G18960.1 | 38.000 | 100 | 60 | 1 | 11 | 108 | 29 | 128 | 9.28e-16 | 74.7 |
| Msa0503720 | AT3G18960.3 | 40.476 | 84 | 50 | 0 | 25 | 108 | 8 | 91 | 4.48e-13 | 66.6 |
| Msa0503720 | AT4G33280.1 | 23.333 | 300 | 200 | 9 | 10 | 283 | 23 | 318 | 8.20e-13 | 68.2 |
| Msa0503720 | AT3G53310.1 | 33.077 | 130 | 74 | 4 | 1 | 118 | 1 | 129 | 7.35e-12 | 64.7 |
| Msa0503720 | AT2G16210.1 | 27.660 | 282 | 179 | 9 | 12 | 280 | 19 | 288 | 7.86e-12 | 64.7 |
Find 56 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCTTGGACATGGCTCTT+TGG | 0.220059 | 3_4:-47268761 | Msa0503720:CDS |
| GCACTAAATGGAAAGTTTAT+TGG | 0.220986 | 3_4:-47268843 | Msa0503720:CDS |
| CGTTCTTATGAGAGCAAAAT+TGG | 0.231886 | 3_4:-47268092 | Msa0503720:CDS |
| GTATGTTCTACCAGATTAAT+TGG | 0.237843 | 3_4:+47268300 | None:intergenic |
| TGATGAATCAGTGGAGATTT+TGG | 0.245378 | 3_4:-47268614 | Msa0503720:CDS |
| AGTCTCTTGATGGCACTAAA+TGG | 0.292865 | 3_4:-47268855 | Msa0503720:CDS |
| TTTACTGAAAATTACTCTCT+TGG | 0.354240 | 3_4:-47268775 | Msa0503720:CDS |
| ACTGATAAACAAGAAAGATT+TGG | 0.358474 | 3_4:-47267994 | Msa0503720:CDS |
| TCCTGAGCTCTAGCATCCTT+TGG | 0.372162 | 3_4:+47268375 | None:intergenic |
| AAAGAACTTCATCAATGAAT+TGG | 0.387908 | 3_4:-47268398 | Msa0503720:CDS |
| TTGAATATAAAGGAACTTCC+AGG | 0.390030 | 3_4:-47268732 | Msa0503720:CDS |
| TGGTGAGATTTGGTTTGAAA+AGG | 0.404488 | 3_4:-47268809 | Msa0503720:CDS |
| AATCTATTTCCACTGCATTC+CGG | 0.411258 | 3_4:+47268689 | None:intergenic |
| TTGGTGGTGTTTGAATATAA+AGG | 0.416414 | 3_4:-47268742 | Msa0503720:CDS |
| TCTCATCAAGCCAATTAATC+TGG | 0.435253 | 3_4:-47268310 | Msa0503720:CDS |
| AGAGAAAGTGGACTGAAATC+AGG | 0.441039 | 3_4:-47268035 | Msa0503720:CDS |
| TGTCTCCTAGTAAACTCATT+TGG | 0.453985 | 3_4:+47268910 | None:intergenic |
| TCAATAACCCCTTTAAAATC+CGG | 0.454140 | 3_4:+47268176 | None:intergenic |
| GTGTTGATAAAGTCTCTTGA+TGG | 0.457533 | 3_4:-47268865 | Msa0503720:CDS |
| GCCGTCGCCTTTCCGCGGGC+TGG | 0.461892 | 3_4:-47268070 | Msa0503720:CDS |
| AGATTTGGTTTGAAAAGGGT+TGG | 0.470784 | 3_4:-47268804 | Msa0503720:CDS |
| AAATACCAAATGAGTTTACT+AGG | 0.476109 | 3_4:-47268915 | Msa0503720:CDS |
| AATTGGCCGTCGCCTTTCCG+CGG | 0.479288 | 3_4:-47268075 | Msa0503720:CDS |
| AGAATGTGATGCTGCTGATT+GGG | 0.480788 | 3_4:-47268142 | Msa0503720:CDS |
| AAGAATGTGATGCTGCTGAT+TGG | 0.482287 | 3_4:-47268143 | Msa0503720:CDS |
| TACTTATTTGCAAGAGAAAG+TGG | 0.484810 | 3_4:-47268047 | Msa0503720:CDS |
| CTTATGTGGTCGAGGAGAAA+CGG | 0.495106 | 3_4:+47268549 | None:intergenic |
| CGACCACATAAGAAAGTTCG+AGG | 0.495617 | 3_4:-47268538 | Msa0503720:intron |
| TAAAGGGGTTATTGAGAACA+AGG | 0.498536 | 3_4:-47268168 | Msa0503720:CDS |
| ATTGGCCGTCGCCTTTCCGC+GGG | 0.502076 | 3_4:-47268074 | Msa0503720:CDS |
| TCTTGGACATGGCTCTTTGG+TGG | 0.506179 | 3_4:-47268758 | Msa0503720:CDS |
| ACTTTAAACTCTTTCATCCA+TGG | 0.506291 | 3_4:-47269254 | None:intergenic |
| GCCAAAGGATGCTAGAGCTC+AGG | 0.513948 | 3_4:-47268376 | Msa0503720:CDS |
| GGTGAGATTTGGTTTGAAAA+GGG | 0.518476 | 3_4:-47268808 | Msa0503720:CDS |
| AAACCTCGAACTTTCTTATG+TGG | 0.519561 | 3_4:+47268535 | None:intergenic |
| ACCAGCCCGCGGAAAGGCGA+CGG | 0.528367 | 3_4:+47268069 | None:intergenic |
| TTATACTATGCAGTCTGTAC+CGG | 0.529519 | 3_4:-47268195 | Msa0503720:intron |
| CGAACTTTCTTATGTGGTCG+AGG | 0.535602 | 3_4:+47268541 | None:intergenic |
| TTGATGTACACATATTTGAC+CGG | 0.536461 | 3_4:-47268708 | Msa0503720:CDS |
| TCAAGAGACTTTATCAACAC+TGG | 0.538774 | 3_4:+47268868 | None:intergenic |
| GGGAAGGATAGAACTTCCTC+TGG | 0.541117 | 3_4:+47269231 | None:intergenic |
| AAATATGTGTACATCAAACC+TGG | 0.553885 | 3_4:+47268714 | None:intergenic |
| TAATCTGGTAGAACATACTC+TGG | 0.560062 | 3_4:-47268295 | Msa0503720:intron |
| GATAGAACTTCCTCTGGCCA+TGG | 0.562311 | 3_4:+47269237 | None:intergenic |
| TGCTGATTGGGAAAATATCA+TGG | 0.571359 | 3_4:-47268130 | Msa0503720:CDS |
| TGAATGGCTTAATCGGAAGA+AGG | 0.588393 | 3_4:-47268590 | Msa0503720:CDS |
| ATAAGTACCAGCCCGCGGAA+AGG | 0.595441 | 3_4:+47268063 | None:intergenic |
| GGATGCTAGAGCTCAGGAAG+TGG | 0.595731 | 3_4:-47268370 | Msa0503720:CDS |
| TTCATCAATGAATTGGCCAA+AGG | 0.600242 | 3_4:-47268391 | Msa0503720:CDS |
| CATATTTGACCGGAATGCAG+TGG | 0.622074 | 3_4:-47268698 | Msa0503720:CDS |
| AATGAGTTTACTAGGAGACA+TGG | 0.629813 | 3_4:-47268907 | Msa0503720:CDS |
| GAAAATTACTCTCTTGGACA+TGG | 0.632483 | 3_4:-47268769 | Msa0503720:CDS |
| TGCAAATAAGTACCAGCCCG+CGG | 0.652502 | 3_4:+47268058 | None:intergenic |
| TGTGGTCGAGGAGAAACGGA+AGG | 0.658286 | 3_4:+47268553 | None:intergenic |
| ACTCTTTCATCCATGGCCAG+AGG | 0.664430 | 3_4:-47269247 | None:intergenic |
| TGATAGTGATGATGAATCAG+TGG | 0.668585 | 3_4:-47268623 | Msa0503720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAAGTAAATAGTATTAAT+AGG | + | chr3_4:47268061-47268080 | None:intergenic | 15.0% |
| !! | CTAAAGTAAATAGTATTAAT+AGG | + | chr3_4:47268061-47268080 | None:intergenic | 15.0% |
| !! | TTGTTTATATTATTAGCACT+AGG | - | chr3_4:47268144-47268163 | Msa0503720:CDS | 20.0% |
| !! | TTGTTTATATTATTAGCACT+AGG | - | chr3_4:47268144-47268163 | Msa0503720:CDS | 20.0% |
| !!! | CAATCTTTTGAAGATTAGTT+TGG | + | chr3_4:47268030-47268049 | None:intergenic | 25.0% |
| ! | CAGTGTTGTATTTATATAGA+AGG | - | chr3_4:47268215-47268234 | Msa0503720:intron | 25.0% |
| ! | TAAAAATTAAAGAACCCCTT+TGG | + | chr3_4:47268273-47268292 | None:intergenic | 25.0% |
| ! | AAATACCAAATGAGTTTACT+AGG | - | chr3_4:47268297-47268316 | Msa0503720:CDS | 25.0% |
| ! | GTTTATTGGAAAAAAATCGA+TGG | - | chr3_4:47268383-47268402 | Msa0503720:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | - | chr3_4:47268437-47268456 | Msa0503720:intron | 25.0% |
| ! | TTTCTTTACAGTATACGTAA+TGG | - | chr3_4:47268716-47268735 | Msa0503720:CDS | 25.0% |
| ! | AAAGAACTTCATCAATGAAT+TGG | - | chr3_4:47268814-47268833 | Msa0503720:CDS | 25.0% |
| ! | ACTGATAAACAAGAAAGATT+TGG | - | chr3_4:47269218-47269237 | Msa0503720:CDS | 25.0% |
| !!! | CAAGAAAGATTTGGTTTTTA+AGG | - | chr3_4:47269227-47269246 | Msa0503720:CDS | 25.0% |
| !!! | CAATCTTTTGAAGATTAGTT+TGG | + | chr3_4:47268030-47268049 | None:intergenic | 25.0% |
| ! | CAGTGTTGTATTTATATAGA+AGG | - | chr3_4:47268215-47268234 | Msa0503720:intron | 25.0% |
| ! | TAAAAATTAAAGAACCCCTT+TGG | + | chr3_4:47268273-47268292 | None:intergenic | 25.0% |
| ! | AAATACCAAATGAGTTTACT+AGG | - | chr3_4:47268297-47268316 | Msa0503720:CDS | 25.0% |
| ! | GTTTATTGGAAAAAAATCGA+TGG | - | chr3_4:47268383-47268402 | Msa0503720:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | - | chr3_4:47268437-47268456 | Msa0503720:intron | 25.0% |
| ! | TTTCTTTACAGTATACGTAA+TGG | - | chr3_4:47268716-47268735 | Msa0503720:CDS | 25.0% |
| ! | AAAGAACTTCATCAATGAAT+TGG | - | chr3_4:47268814-47268833 | Msa0503720:CDS | 25.0% |
| ! | ACTGATAAACAAGAAAGATT+TGG | - | chr3_4:47269218-47269237 | Msa0503720:CDS | 25.0% |
| !!! | CAAGAAAGATTTGGTTTTTA+AGG | - | chr3_4:47269227-47269246 | Msa0503720:CDS | 25.0% |
| !! | ATGATTTTGAAGAAACGGAT+GGG | + | chr3_4:47268004-47268023 | None:intergenic | 30.0% |
| !! | AATGATTTTGAAGAAACGGA+TGG | + | chr3_4:47268005-47268024 | None:intergenic | 30.0% |
| !! | GGAGAATGATTTTGAAGAAA+CGG | + | chr3_4:47268009-47268028 | None:intergenic | 30.0% |
| ! | AGCACTAGGAAATTTTATGA+TGG | - | chr3_4:47268158-47268177 | Msa0503720:CDS | 30.0% |
| GCACTAAATGGAAAGTTTAT+TGG | - | chr3_4:47268369-47268388 | Msa0503720:CDS | 30.0% | |
| AAAAAATCGATGGTGAGATT+TGG | - | chr3_4:47268393-47268412 | Msa0503720:CDS | 30.0% | |
| !! | TTGGTGGTGTTTGAATATAA+AGG | - | chr3_4:47268470-47268489 | Msa0503720:intron | 30.0% |
| TTGAATATAAAGGAACTTCC+AGG | - | chr3_4:47268480-47268499 | Msa0503720:intron | 30.0% | |
| AAATATGTGTACATCAAACC+TGG | + | chr3_4:47268501-47268520 | None:intergenic | 30.0% | |
| TTGATGTACACATATTTGAC+CGG | - | chr3_4:47268504-47268523 | Msa0503720:intron | 30.0% | |
| ! | TTTTGGATGAATGGCTTAAT+CGG | - | chr3_4:47268615-47268634 | Msa0503720:CDS | 30.0% |
| TAAAACAGAGAAGAAACTCT+TGG | + | chr3_4:47268753-47268772 | None:intergenic | 30.0% | |
| GTATGTTCTACCAGATTAAT+TGG | + | chr3_4:47268915-47268934 | None:intergenic | 30.0% | |
| !! | TCAATAACCCCTTTAAAATC+CGG | + | chr3_4:47269039-47269058 | None:intergenic | 30.0% |
| TACTTATTTGCAAGAGAAAG+TGG | - | chr3_4:47269165-47269184 | Msa0503720:intron | 30.0% | |
| !! | ATGATTTTGAAGAAACGGAT+GGG | + | chr3_4:47268004-47268023 | None:intergenic | 30.0% |
| !! | AATGATTTTGAAGAAACGGA+TGG | + | chr3_4:47268005-47268024 | None:intergenic | 30.0% |
| !! | GGAGAATGATTTTGAAGAAA+CGG | + | chr3_4:47268009-47268028 | None:intergenic | 30.0% |
| ! | AGCACTAGGAAATTTTATGA+TGG | - | chr3_4:47268158-47268177 | Msa0503720:CDS | 30.0% |
| GCACTAAATGGAAAGTTTAT+TGG | - | chr3_4:47268369-47268388 | Msa0503720:CDS | 30.0% | |
| AAAAAATCGATGGTGAGATT+TGG | - | chr3_4:47268393-47268412 | Msa0503720:CDS | 30.0% | |
| !! | TTGGTGGTGTTTGAATATAA+AGG | - | chr3_4:47268470-47268489 | Msa0503720:intron | 30.0% |
| TTGAATATAAAGGAACTTCC+AGG | - | chr3_4:47268480-47268499 | Msa0503720:intron | 30.0% | |
| AAATATGTGTACATCAAACC+TGG | + | chr3_4:47268501-47268520 | None:intergenic | 30.0% | |
| TTGATGTACACATATTTGAC+CGG | - | chr3_4:47268504-47268523 | Msa0503720:intron | 30.0% | |
| ! | TTTTGGATGAATGGCTTAAT+CGG | - | chr3_4:47268615-47268634 | Msa0503720:CDS | 30.0% |
| TAAAACAGAGAAGAAACTCT+TGG | + | chr3_4:47268753-47268772 | None:intergenic | 30.0% | |
| GTATGTTCTACCAGATTAAT+TGG | + | chr3_4:47268915-47268934 | None:intergenic | 30.0% | |
| !! | TCAATAACCCCTTTAAAATC+CGG | + | chr3_4:47269039-47269058 | None:intergenic | 30.0% |
| TACTTATTTGCAAGAGAAAG+TGG | - | chr3_4:47269165-47269184 | Msa0503720:intron | 30.0% | |
| ! | CTTTTTGCTTAGTGACCAAA+GGG | - | chr3_4:47268255-47268274 | Msa0503720:intron | 35.0% |
| ! | TTTTTGCTTAGTGACCAAAG+GGG | - | chr3_4:47268256-47268275 | Msa0503720:intron | 35.0% |
| TGTCTCCTAGTAAACTCATT+TGG | + | chr3_4:47268305-47268324 | None:intergenic | 35.0% | |
| AATGAGTTTACTAGGAGACA+TGG | - | chr3_4:47268305-47268324 | Msa0503720:CDS | 35.0% | |
| TCAAGAGACTTTATCAACAC+TGG | + | chr3_4:47268347-47268366 | None:intergenic | 35.0% | |
| ! | GTGTTGATAAAGTCTCTTGA+TGG | - | chr3_4:47268347-47268366 | Msa0503720:CDS | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | - | chr3_4:47268403-47268422 | Msa0503720:CDS | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | - | chr3_4:47268404-47268423 | Msa0503720:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | - | chr3_4:47268408-47268427 | Msa0503720:CDS | 35.0% |
| GAAAATTACTCTCTTGGACA+TGG | - | chr3_4:47268443-47268462 | Msa0503720:intron | 35.0% | |
| AATCTATTTCCACTGCATTC+CGG | + | chr3_4:47268526-47268545 | None:intergenic | 35.0% | |
| ! | TGATAGTGATGATGAATCAG+TGG | - | chr3_4:47268589-47268608 | Msa0503720:CDS | 35.0% |
| ! | TGATGAATCAGTGGAGATTT+TGG | - | chr3_4:47268598-47268617 | Msa0503720:CDS | 35.0% |
| AAACCTCGAACTTTCTTATG+TGG | + | chr3_4:47268680-47268699 | None:intergenic | 35.0% | |
| ACATAAGAAAGTTCGAGGTT+TGG | - | chr3_4:47268679-47268698 | Msa0503720:CDS | 35.0% | |
| TACATTGCACACATATATGC+AGG | - | chr3_4:47268771-47268790 | Msa0503720:CDS | 35.0% | |
| TTCATCAATGAATTGGCCAA+AGG | - | chr3_4:47268821-47268840 | Msa0503720:CDS | 35.0% | |
| TCTCATCAAGCCAATTAATC+TGG | - | chr3_4:47268902-47268921 | Msa0503720:CDS | 35.0% | |
| TAATCTGGTAGAACATACTC+TGG | - | chr3_4:47268917-47268936 | Msa0503720:CDS | 35.0% | |
| TTATACTATGCAGTCTGTAC+CGG | - | chr3_4:47269017-47269036 | Msa0503720:intron | 35.0% | |
| ! | AGTCTGTACCGGATTTTAAA+GGG | - | chr3_4:47269028-47269047 | Msa0503720:intron | 35.0% |
| TAAAGGGGTTATTGAGAACA+AGG | - | chr3_4:47269044-47269063 | Msa0503720:intron | 35.0% | |
| ! | TGCTGATTGGGAAAATATCA+TGG | - | chr3_4:47269082-47269101 | Msa0503720:intron | 35.0% |
| CGTTCTTATGAGAGCAAAAT+TGG | - | chr3_4:47269120-47269139 | Msa0503720:intron | 35.0% | |
| ! | CTTTTTGCTTAGTGACCAAA+GGG | - | chr3_4:47268255-47268274 | Msa0503720:intron | 35.0% |
| ! | TTTTTGCTTAGTGACCAAAG+GGG | - | chr3_4:47268256-47268275 | Msa0503720:intron | 35.0% |
| TGTCTCCTAGTAAACTCATT+TGG | + | chr3_4:47268305-47268324 | None:intergenic | 35.0% | |
| AATGAGTTTACTAGGAGACA+TGG | - | chr3_4:47268305-47268324 | Msa0503720:CDS | 35.0% | |
| TCAAGAGACTTTATCAACAC+TGG | + | chr3_4:47268347-47268366 | None:intergenic | 35.0% | |
| ! | GTGTTGATAAAGTCTCTTGA+TGG | - | chr3_4:47268347-47268366 | Msa0503720:CDS | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | - | chr3_4:47268403-47268422 | Msa0503720:CDS | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | - | chr3_4:47268404-47268423 | Msa0503720:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | - | chr3_4:47268408-47268427 | Msa0503720:CDS | 35.0% |
| GAAAATTACTCTCTTGGACA+TGG | - | chr3_4:47268443-47268462 | Msa0503720:intron | 35.0% | |
| AATCTATTTCCACTGCATTC+CGG | + | chr3_4:47268526-47268545 | None:intergenic | 35.0% | |
| ! | TGATAGTGATGATGAATCAG+TGG | - | chr3_4:47268589-47268608 | Msa0503720:CDS | 35.0% |
| ! | TGATGAATCAGTGGAGATTT+TGG | - | chr3_4:47268598-47268617 | Msa0503720:CDS | 35.0% |
| AAACCTCGAACTTTCTTATG+TGG | + | chr3_4:47268680-47268699 | None:intergenic | 35.0% | |
| ACATAAGAAAGTTCGAGGTT+TGG | - | chr3_4:47268679-47268698 | Msa0503720:CDS | 35.0% | |
| TACATTGCACACATATATGC+AGG | - | chr3_4:47268771-47268790 | Msa0503720:CDS | 35.0% | |
| TTCATCAATGAATTGGCCAA+AGG | - | chr3_4:47268821-47268840 | Msa0503720:CDS | 35.0% | |
| TCTCATCAAGCCAATTAATC+TGG | - | chr3_4:47268902-47268921 | Msa0503720:CDS | 35.0% | |
| TAATCTGGTAGAACATACTC+TGG | - | chr3_4:47268917-47268936 | Msa0503720:CDS | 35.0% | |
| TTATACTATGCAGTCTGTAC+CGG | - | chr3_4:47269017-47269036 | Msa0503720:intron | 35.0% | |
| ! | AGTCTGTACCGGATTTTAAA+GGG | - | chr3_4:47269028-47269047 | Msa0503720:intron | 35.0% |
| TAAAGGGGTTATTGAGAACA+AGG | - | chr3_4:47269044-47269063 | Msa0503720:intron | 35.0% | |
| ! | TGCTGATTGGGAAAATATCA+TGG | - | chr3_4:47269082-47269101 | Msa0503720:intron | 35.0% |
| CGTTCTTATGAGAGCAAAAT+TGG | - | chr3_4:47269120-47269139 | Msa0503720:intron | 35.0% | |
| !! | TTTTGAAGAAACGGATGGGA+AGG | + | chr3_4:47268000-47268019 | None:intergenic | 40.0% |
| CATGTTACATGTGTGATGTG+TGG | + | chr3_4:47268100-47268119 | None:intergenic | 40.0% | |
| ! | GCTTTTTGCTTAGTGACCAA+AGG | - | chr3_4:47268254-47268273 | Msa0503720:intron | 40.0% |
| ! | AGTCTCTTGATGGCACTAAA+TGG | - | chr3_4:47268357-47268376 | Msa0503720:CDS | 40.0% |
| ! | CAGTGGAGATTTTGGATGAA+TGG | - | chr3_4:47268606-47268625 | Msa0503720:CDS | 40.0% |
| TGAATGGCTTAATCGGAAGA+AGG | - | chr3_4:47268622-47268641 | Msa0503720:CDS | 40.0% | |
| ! | CAGTCTGTACCGGATTTTAA+AGG | - | chr3_4:47269027-47269046 | Msa0503720:intron | 40.0% |
| !! | GTCTGTACCGGATTTTAAAG+GGG | - | chr3_4:47269029-47269048 | Msa0503720:intron | 40.0% |
| AAGAATGTGATGCTGCTGAT+TGG | - | chr3_4:47269069-47269088 | Msa0503720:intron | 40.0% | |
| ! | AGAATGTGATGCTGCTGATT+GGG | - | chr3_4:47269070-47269089 | Msa0503720:intron | 40.0% |
| !! | AGAGAAAGTGGACTGAAATC+AGG | - | chr3_4:47269177-47269196 | Msa0503720:intron | 40.0% |
| !! | TTTTGAAGAAACGGATGGGA+AGG | + | chr3_4:47268000-47268019 | None:intergenic | 40.0% |
| CATGTTACATGTGTGATGTG+TGG | + | chr3_4:47268100-47268119 | None:intergenic | 40.0% | |
| ! | GCTTTTTGCTTAGTGACCAA+AGG | - | chr3_4:47268254-47268273 | Msa0503720:intron | 40.0% |
| ! | AGTCTCTTGATGGCACTAAA+TGG | - | chr3_4:47268357-47268376 | Msa0503720:CDS | 40.0% |
| ! | CAGTGGAGATTTTGGATGAA+TGG | - | chr3_4:47268606-47268625 | Msa0503720:CDS | 40.0% |
| TGAATGGCTTAATCGGAAGA+AGG | - | chr3_4:47268622-47268641 | Msa0503720:CDS | 40.0% | |
| ! | CAGTCTGTACCGGATTTTAA+AGG | - | chr3_4:47269027-47269046 | Msa0503720:intron | 40.0% |
| !! | GTCTGTACCGGATTTTAAAG+GGG | - | chr3_4:47269029-47269048 | Msa0503720:intron | 40.0% |
| AAGAATGTGATGCTGCTGAT+TGG | - | chr3_4:47269069-47269088 | Msa0503720:intron | 40.0% | |
| ! | AGAATGTGATGCTGCTGATT+GGG | - | chr3_4:47269070-47269089 | Msa0503720:intron | 40.0% |
| !! | AGAGAAAGTGGACTGAAATC+AGG | - | chr3_4:47269177-47269196 | Msa0503720:intron | 40.0% |
| CATATTTGACCGGAATGCAG+TGG | - | chr3_4:47268514-47268533 | Msa0503720:intron | 45.0% | |
| CTTATGTGGTCGAGGAGAAA+CGG | + | chr3_4:47268666-47268685 | None:intergenic | 45.0% | |
| CGAACTTTCTTATGTGGTCG+AGG | + | chr3_4:47268674-47268693 | None:intergenic | 45.0% | |
| CGACCACATAAGAAAGTTCG+AGG | - | chr3_4:47268674-47268693 | Msa0503720:CDS | 45.0% | |
| CTGGTAGAACATACTCTGGT+AGG | - | chr3_4:47268921-47268940 | Msa0503720:intron | 45.0% | |
| CATATTTGACCGGAATGCAG+TGG | - | chr3_4:47268514-47268533 | Msa0503720:intron | 45.0% | |
| CTTATGTGGTCGAGGAGAAA+CGG | + | chr3_4:47268666-47268685 | None:intergenic | 45.0% | |
| CGAACTTTCTTATGTGGTCG+AGG | + | chr3_4:47268674-47268693 | None:intergenic | 45.0% | |
| CGACCACATAAGAAAGTTCG+AGG | - | chr3_4:47268674-47268693 | Msa0503720:CDS | 45.0% | |
| CTGGTAGAACATACTCTGGT+AGG | - | chr3_4:47268921-47268940 | Msa0503720:intron | 45.0% | |
| GATAGAACTTCCTCTGGCCA+TGG | + | chr3_4:47267978-47267997 | None:intergenic | 50.0% | |
| GGGAAGGATAGAACTTCCTC+TGG | + | chr3_4:47267984-47268003 | None:intergenic | 50.0% | |
| CTCTCTTGGACATGGCTCTT+TGG | - | chr3_4:47268451-47268470 | Msa0503720:intron | 50.0% | |
| TCTTGGACATGGCTCTTTGG+TGG | - | chr3_4:47268454-47268473 | Msa0503720:intron | 50.0% | |
| ! | TCCTGAGCTCTAGCATCCTT+TGG | + | chr3_4:47268840-47268859 | None:intergenic | 50.0% |
| TGCAAATAAGTACCAGCCCG+CGG | + | chr3_4:47269157-47269176 | None:intergenic | 50.0% | |
| GATAGAACTTCCTCTGGCCA+TGG | + | chr3_4:47267978-47267997 | None:intergenic | 50.0% | |
| GGGAAGGATAGAACTTCCTC+TGG | + | chr3_4:47267984-47268003 | None:intergenic | 50.0% | |
| CTCTCTTGGACATGGCTCTT+TGG | - | chr3_4:47268451-47268470 | Msa0503720:intron | 50.0% | |
| TCTTGGACATGGCTCTTTGG+TGG | - | chr3_4:47268454-47268473 | Msa0503720:intron | 50.0% | |
| ! | TCCTGAGCTCTAGCATCCTT+TGG | + | chr3_4:47268840-47268859 | None:intergenic | 50.0% |
| TGCAAATAAGTACCAGCCCG+CGG | + | chr3_4:47269157-47269176 | None:intergenic | 50.0% | |
| TGTGGTCGAGGAGAAACGGA+AGG | + | chr3_4:47268662-47268681 | None:intergenic | 55.0% | |
| GCCAAAGGATGCTAGAGCTC+AGG | - | chr3_4:47268836-47268855 | Msa0503720:CDS | 55.0% | |
| GGATGCTAGAGCTCAGGAAG+TGG | - | chr3_4:47268842-47268861 | Msa0503720:CDS | 55.0% | |
| ATAAGTACCAGCCCGCGGAA+AGG | + | chr3_4:47269152-47269171 | None:intergenic | 55.0% | |
| TGTGGTCGAGGAGAAACGGA+AGG | + | chr3_4:47268662-47268681 | None:intergenic | 55.0% | |
| GCCAAAGGATGCTAGAGCTC+AGG | - | chr3_4:47268836-47268855 | Msa0503720:CDS | 55.0% | |
| GGATGCTAGAGCTCAGGAAG+TGG | - | chr3_4:47268842-47268861 | Msa0503720:CDS | 55.0% | |
| ATAAGTACCAGCCCGCGGAA+AGG | + | chr3_4:47269152-47269171 | None:intergenic | 55.0% | |
| AATTGGCCGTCGCCTTTCCG+CGG | - | chr3_4:47269137-47269156 | Msa0503720:intron | 60.0% | |
| AATTGGCCGTCGCCTTTCCG+CGG | - | chr3_4:47269137-47269156 | Msa0503720:intron | 60.0% | |
| ATTGGCCGTCGCCTTTCCGC+GGG | - | chr3_4:47269138-47269157 | Msa0503720:intron | 65.0% | |
| ATTGGCCGTCGCCTTTCCGC+GGG | - | chr3_4:47269138-47269157 | Msa0503720:intron | 65.0% | |
| ACCAGCCCGCGGAAAGGCGA+CGG | + | chr3_4:47269146-47269165 | None:intergenic | 70.0% | |
| ACCAGCCCGCGGAAAGGCGA+CGG | + | chr3_4:47269146-47269165 | None:intergenic | 70.0% | |
| ! | GCCGTCGCCTTTCCGCGGGC+TGG | - | chr3_4:47269142-47269161 | Msa0503720:intron | 80.0% |
| ! | GCCGTCGCCTTTCCGCGGGC+TGG | - | chr3_4:47269142-47269161 | Msa0503720:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 47267971 | 47269263 | 47267971 | ID=Msa0503720;Name=Msa0503720 |
| chr3_4 | mRNA | 47267971 | 47269263 | 47267971 | ID=Msa0503720-mRNA-1;Parent=Msa0503720;Name=Msa0503720-mRNA-1;_AED=0.06;_eAED=0.06;_QI=6|0.33|0.25|1|1|1|4|0|283 |
| chr3_4 | exon | 47267971 | 47268204 | 47267971 | ID=Msa0503720-mRNA-1:exon:10156;Parent=Msa0503720-mRNA-1 |
| chr3_4 | exon | 47268296 | 47268441 | 47268296 | ID=Msa0503720-mRNA-1:exon:10155;Parent=Msa0503720-mRNA-1 |
| chr3_4 | exon | 47268539 | 47268938 | 47268539 | ID=Msa0503720-mRNA-1:exon:10154;Parent=Msa0503720-mRNA-1 |
| chr3_4 | exon | 47269186 | 47269263 | 47269186 | ID=Msa0503720-mRNA-1:exon:10153;Parent=Msa0503720-mRNA-1 |
| chr3_4 | five_prime_UTR | 47269258 | 47269263 | 47269258 | ID=Msa0503720-mRNA-1:five_prime_utr;Parent=Msa0503720-mRNA-1 |
| chr3_4 | CDS | 47269186 | 47269257 | 47269186 | ID=Msa0503720-mRNA-1:cds;Parent=Msa0503720-mRNA-1 |
| chr3_4 | CDS | 47268539 | 47268938 | 47268539 | ID=Msa0503720-mRNA-1:cds;Parent=Msa0503720-mRNA-1 |
| chr3_4 | CDS | 47268296 | 47268441 | 47268296 | ID=Msa0503720-mRNA-1:cds;Parent=Msa0503720-mRNA-1 |
| chr3_4 | CDS | 47267971 | 47268204 | 47267971 | ID=Msa0503720-mRNA-1:cds;Parent=Msa0503720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
