Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504120 | KEH15586.1 | 74.699 | 83 | 21 | 0 | 15 | 97 | 50 | 132 | 1.27e-25 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504120 | sp|Q6X7J4|WOX9_ARATH | 68.085 | 47 | 15 | 0 | 1 | 47 | 74 | 120 | 2.06e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504120 | A0A072TEA9 | 74.699 | 83 | 21 | 0 | 15 | 97 | 50 | 132 | 6.08e-26 | 106 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0504120 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504120 | MtrunA17_Chr7g0223471 | 64.444 | 90 | 27 | 1 | 1 | 90 | 66 | 150 | 1.42e-24 | 98.6 |
| Msa0504120 | MtrunA17_Chr7g0223471 | 68.889 | 45 | 14 | 0 | 128 | 172 | 339 | 383 | 8.40e-13 | 65.5 |
| Msa0504120 | MtrunA17_Chr4g0046231 | 67.606 | 71 | 20 | 2 | 1 | 69 | 1 | 70 | 7.19e-22 | 90.5 |
| Msa0504120 | MtrunA17_Chr4g0046231 | 68.750 | 48 | 15 | 0 | 125 | 172 | 257 | 304 | 2.57e-15 | 72.4 |
| Msa0504120 | MtrunA17_Chr2g0283141 | 74.419 | 43 | 11 | 0 | 1 | 43 | 74 | 116 | 6.25e-16 | 74.3 |
| Msa0504120 | MtrunA17_Chr4g0046251 | 60.377 | 53 | 21 | 0 | 120 | 172 | 11 | 63 | 5.87e-14 | 64.3 |
| Msa0504120 | MtrunA17_Chr7g0254251 | 25.253 | 198 | 122 | 5 | 1 | 172 | 47 | 244 | 5.41e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504120 | AT2G33880.1 | 68.085 | 47 | 15 | 0 | 1 | 47 | 74 | 120 | 2.10e-16 | 75.9 |
| Msa0504120 | AT2G33880.2 | 68.085 | 47 | 15 | 0 | 1 | 47 | 74 | 120 | 2.51e-16 | 75.9 |
| Msa0504120 | AT5G45980.1 | 58.000 | 50 | 20 | 1 | 2 | 51 | 75 | 123 | 1.22e-13 | 67.8 |
Find 42 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCCGTTTGGTTGTGTTTC+TGG | 0.082230 | 3_4:-48105281 | None:intergenic |
| CGTGAACAATTACAAGAATT+TGG | 0.113481 | 3_4:+48105170 | Msa0504120:CDS |
| AAACAATTCACGAACGTTAA+AGG | 0.235735 | 3_4:-48107000 | None:intergenic |
| TGTTTCTGGTCTCTTGTTGT+AGG | 0.261301 | 3_4:-48105267 | None:intergenic |
| AAGCATGGAGTCGCGACTAA+TGG | 0.338923 | 3_4:+48106515 | Msa0504120:CDS |
| GAAAGATGATGAAGATGATT+TGG | 0.341139 | 3_4:-48105342 | None:intergenic |
| ATTTGTGTGAGAGAATTATT+AGG | 0.352206 | 3_4:-48105305 | None:intergenic |
| GCAGTTCTATTTGACTCCTT+TGG | 0.365617 | 3_4:+48107032 | Msa0504120:CDS |
| GTGAACAATTACAAGAATTT+GGG | 0.368349 | 3_4:+48105171 | Msa0504120:CDS |
| TTTAACGTTCGTGAATTGTT+TGG | 0.410393 | 3_4:+48107002 | Msa0504120:CDS |
| TTCTTAATCTCATCTCTTGG+TGG | 0.415394 | 3_4:-48105143 | None:intergenic |
| AACAATTCACGAACGTTAAA+GGG | 0.419941 | 3_4:-48106999 | None:intergenic |
| GTTTCTGGTCTCTTGTTGTA+GGG | 0.424258 | 3_4:-48105266 | None:intergenic |
| AGCATGGAGTCGCGACTAAT+GGG | 0.428867 | 3_4:+48106516 | Msa0504120:CDS |
| ATCTTCTTAATCTCATCTCT+TGG | 0.440501 | 3_4:-48105146 | None:intergenic |
| CCGCATTCATCGGTTAGAAC+CGG | 0.449747 | 3_4:-48107060 | None:intergenic |
| GCCGTATTCGAGGTTCATGC+AGG | 0.452223 | 3_4:+48106975 | Msa0504120:CDS |
| AAATGTAGGGTGATTACTAA+TGG | 0.456830 | 3_4:+48106951 | Msa0504120:CDS |
| CGCATTCATCGGTTAGAACC+GGG | 0.459641 | 3_4:-48107059 | None:intergenic |
| TCAAGTTTCGGTAAGGAAGA+TGG | 0.473590 | 3_4:+48106921 | Msa0504120:CDS |
| TGTGTGTGTTTGTCAAGTTT+CGG | 0.481656 | 3_4:+48106909 | Msa0504120:CDS |
| TATTATGGTTTCACTGGGAG+AGG | 0.492399 | 3_4:-48105381 | None:intergenic |
| TACTAATGGTGCCGTATTCG+AGG | 0.495892 | 3_4:+48106965 | Msa0504120:CDS |
| CCCTGCATGAACCTCGAATA+CGG | 0.501995 | 3_4:-48106976 | None:intergenic |
| ATAGAGAGAAAAGCAGAGCC+TGG | 0.520166 | 3_4:+48106467 | Msa0504120:CDS |
| AAGATGGTACGGCAAAATGT+AGG | 0.521206 | 3_4:+48106937 | Msa0504120:CDS |
| GAATTATTAGGAGTTCCGTT+TGG | 0.522863 | 3_4:-48105293 | None:intergenic |
| TTTGACTCCTTTGGTACCCC+CGG | 0.526411 | 3_4:+48107041 | Msa0504120:CDS |
| GATGATGAAGATGATTTGGA+AGG | 0.542768 | 3_4:-48105338 | None:intergenic |
| AGACCAGAAACACAACCAAA+CGG | 0.543112 | 3_4:+48105278 | Msa0504120:CDS |
| TTTGGGCAACTTAGTGATGC+TGG | 0.545159 | 3_4:+48105188 | Msa0504120:CDS |
| TAGAGAGAAAAGCAGAGCCT+GGG | 0.555043 | 3_4:+48106468 | Msa0504120:CDS |
| AGATGGTACGGCAAAATGTA+GGG | 0.556412 | 3_4:+48106938 | Msa0504120:CDS |
| GTGTTTGTCAAGTTTCGGTA+AGG | 0.562713 | 3_4:+48106914 | Msa0504120:CDS |
| TTTCTGGTCTCTTGTTGTAG+GGG | 0.566911 | 3_4:-48105265 | None:intergenic |
| GTAAAGCAGAAGCAGAAGCA+TGG | 0.572936 | 3_4:+48106500 | Msa0504120:CDS |
| TTTCGGTAAGGAAGATGGTA+CGG | 0.587850 | 3_4:+48106926 | Msa0504120:CDS |
| GATGAAGATGATTTGGAAGG+AGG | 0.596007 | 3_4:-48105335 | None:intergenic |
| TTTGTCTGCTTATGGACTTG+CGG | 0.603126 | 3_4:-48105232 | None:intergenic |
| CCGTATTCGAGGTTCATGCA+GGG | 0.617482 | 3_4:+48106976 | Msa0504120:CDS |
| CATTCATCGGTTAGAACCGG+GGG | 0.645966 | 3_4:-48107057 | None:intergenic |
| GCATTCATCGGTTAGAACCG+GGG | 0.666459 | 3_4:-48107058 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTAAAAATGTTATAATTA+TGG | - | chr3_4:48105845-48105864 | None:intergenic | 10.0% |
| !! | GAAATAAATAAAATTAAAGT+TGG | + | chr3_4:48106076-48106095 | Msa0504120:intron | 10.0% |
| !!! | CTTTAAAAATGTTATAATTA+TGG | - | chr3_4:48105845-48105864 | None:intergenic | 10.0% |
| !! | GAAATAAATAAAATTAAAGT+TGG | + | chr3_4:48106076-48106095 | Msa0504120:intron | 10.0% |
| !! | TATTATGTCATATATGAATT+CGG | - | chr3_4:48105480-48105499 | None:intergenic | 15.0% |
| !!! | AATTTTTACGAATAAAAAAG+AGG | + | chr3_4:48106008-48106027 | Msa0504120:intron | 15.0% |
| !!! | ATTATTTTTTACACCATTTT+TGG | - | chr3_4:48106044-48106063 | None:intergenic | 15.0% |
| !! | GGTGTAAAAAATAATAAAAA+TGG | + | chr3_4:48106049-48106068 | Msa0504120:intron | 15.0% |
| !! | ATCAAATAGTTAAAAAAACA+AGG | + | chr3_4:48106185-48106204 | Msa0504120:intron | 15.0% |
| !! | TCAAATAGTTAAAAAAACAA+GGG | + | chr3_4:48106186-48106205 | Msa0504120:intron | 15.0% |
| !!! | TAGTTCTAATTAAATACAAA+TGG | + | chr3_4:48106669-48106688 | Msa0504120:intron | 15.0% |
| !! | TATTATGTCATATATGAATT+CGG | - | chr3_4:48105480-48105499 | None:intergenic | 15.0% |
| !!! | AATTTTTACGAATAAAAAAG+AGG | + | chr3_4:48106008-48106027 | Msa0504120:intron | 15.0% |
| !!! | ATTATTTTTTACACCATTTT+TGG | - | chr3_4:48106044-48106063 | None:intergenic | 15.0% |
| !! | GGTGTAAAAAATAATAAAAA+TGG | + | chr3_4:48106049-48106068 | Msa0504120:intron | 15.0% |
| !! | ATCAAATAGTTAAAAAAACA+AGG | + | chr3_4:48106185-48106204 | Msa0504120:intron | 15.0% |
| !! | TCAAATAGTTAAAAAAACAA+GGG | + | chr3_4:48106186-48106205 | Msa0504120:intron | 15.0% |
| !!! | TAGTTCTAATTAAATACAAA+TGG | + | chr3_4:48106669-48106688 | Msa0504120:intron | 15.0% |
| !! | CCAATATTAATGACATATTA+TGG | - | chr3_4:48105399-48105418 | None:intergenic | 20.0% |
| !! | CCATAATATGTCATTAATAT+TGG | + | chr3_4:48105396-48105415 | Msa0504120:intron | 20.0% |
| !! | ATTATGTCATATATGAATTC+GGG | - | chr3_4:48105479-48105498 | None:intergenic | 20.0% |
| !! | GTCATAAATAGAAATAAAAG+AGG | + | chr3_4:48105558-48105577 | Msa0504120:intron | 20.0% |
| !!! | TTTTAATTTTTGAAGCATGA+TGG | - | chr3_4:48106348-48106367 | None:intergenic | 20.0% |
| !!! | AAACAAGGTAATTTAAAGTT+TGG | - | chr3_4:48106773-48106792 | None:intergenic | 20.0% |
| !!! | TTTTTTTCAAGAAAGAAACA+AGG | - | chr3_4:48106788-48106807 | None:intergenic | 20.0% |
| !! | TTATGTGTTATATTATTCCA+TGG | + | chr3_4:48106813-48106832 | Msa0504120:intron | 20.0% |
| !! | CCAATATTAATGACATATTA+TGG | - | chr3_4:48105399-48105418 | None:intergenic | 20.0% |
| !! | CCATAATATGTCATTAATAT+TGG | + | chr3_4:48105396-48105415 | Msa0504120:intron | 20.0% |
| !! | ATTATGTCATATATGAATTC+GGG | - | chr3_4:48105479-48105498 | None:intergenic | 20.0% |
| !! | GTCATAAATAGAAATAAAAG+AGG | + | chr3_4:48105558-48105577 | Msa0504120:intron | 20.0% |
| !!! | TTTTAATTTTTGAAGCATGA+TGG | - | chr3_4:48106348-48106367 | None:intergenic | 20.0% |
| !!! | AAACAAGGTAATTTAAAGTT+TGG | - | chr3_4:48106773-48106792 | None:intergenic | 20.0% |
| !!! | TTTTTTTCAAGAAAGAAACA+AGG | - | chr3_4:48106788-48106807 | None:intergenic | 20.0% |
| !! | TTATGTGTTATATTATTCCA+TGG | + | chr3_4:48106813-48106832 | Msa0504120:intron | 20.0% |
| ! | GTGAACAATTACAAGAATTT+GGG | + | chr3_4:48105171-48105190 | Msa0504120:CDS | 25.0% |
| ! | ATTTGTGTGAGAGAATTATT+AGG | - | chr3_4:48105308-48105327 | None:intergenic | 25.0% |
| ! | ATGGCGTGTTAAATAAAATT+AGG | + | chr3_4:48105640-48105659 | Msa0504120:intron | 25.0% |
| ! | ATTCTTGTACTTCAACAAAA+CGG | + | chr3_4:48105723-48105742 | Msa0504120:intron | 25.0% |
| ! | GTCCAAATTTAATCACTAAA+GGG | + | chr3_4:48106139-48106158 | Msa0504120:intron | 25.0% |
| !! | ACTATTTGATTTAGATCTTG+TGG | - | chr3_4:48106175-48106194 | None:intergenic | 25.0% |
| !!! | GTATTTTAGTTTGTGAGATT+TGG | - | chr3_4:48106384-48106403 | None:intergenic | 25.0% |
| !! | AACTAAAATACCATTTTGCT+TGG | + | chr3_4:48106393-48106412 | Msa0504120:intron | 25.0% |
| ! | TATTAATTACCTTGAAGTCA+GGG | - | chr3_4:48106613-48106632 | None:intergenic | 25.0% |
| ! | ATATTAATTACCTTGAAGTC+AGG | - | chr3_4:48106614-48106633 | None:intergenic | 25.0% |
| !! | TAGTTTATGTTTGTGTTTTC+AGG | + | chr3_4:48106862-48106881 | Msa0504120:intron | 25.0% |
| ! | GTGAACAATTACAAGAATTT+GGG | + | chr3_4:48105171-48105190 | Msa0504120:CDS | 25.0% |
| ! | ATTTGTGTGAGAGAATTATT+AGG | - | chr3_4:48105308-48105327 | None:intergenic | 25.0% |
| ! | ATGGCGTGTTAAATAAAATT+AGG | + | chr3_4:48105640-48105659 | Msa0504120:intron | 25.0% |
| ! | ATTCTTGTACTTCAACAAAA+CGG | + | chr3_4:48105723-48105742 | Msa0504120:intron | 25.0% |
| ! | GTCCAAATTTAATCACTAAA+GGG | + | chr3_4:48106139-48106158 | Msa0504120:intron | 25.0% |
| !! | ACTATTTGATTTAGATCTTG+TGG | - | chr3_4:48106175-48106194 | None:intergenic | 25.0% |
| !!! | GTATTTTAGTTTGTGAGATT+TGG | - | chr3_4:48106384-48106403 | None:intergenic | 25.0% |
| !! | AACTAAAATACCATTTTGCT+TGG | + | chr3_4:48106393-48106412 | Msa0504120:intron | 25.0% |
| ! | TATTAATTACCTTGAAGTCA+GGG | - | chr3_4:48106613-48106632 | None:intergenic | 25.0% |
| ! | ATATTAATTACCTTGAAGTC+AGG | - | chr3_4:48106614-48106633 | None:intergenic | 25.0% |
| !! | TAGTTTATGTTTGTGTTTTC+AGG | + | chr3_4:48106862-48106881 | Msa0504120:intron | 25.0% |
| ATCTTCTTAATCTCATCTCT+TGG | - | chr3_4:48105149-48105168 | None:intergenic | 30.0% | |
| CGTGAACAATTACAAGAATT+TGG | + | chr3_4:48105170-48105189 | Msa0504120:CDS | 30.0% | |
| ! | TCTTTTCTTTTGTCTGCTTA+TGG | - | chr3_4:48105243-48105262 | None:intergenic | 30.0% |
| GAAAGATGATGAAGATGATT+TGG | - | chr3_4:48105345-48105364 | None:intergenic | 30.0% | |
| TGACATATTATGGTTTCACT+GGG | - | chr3_4:48105389-48105408 | None:intergenic | 30.0% | |
| ATGACATATTATGGTTTCAC+TGG | - | chr3_4:48105390-48105409 | None:intergenic | 30.0% | |
| GAAGAAATATAACCTGACAA+TGG | + | chr3_4:48105621-48105640 | Msa0504120:intron | 30.0% | |
| GCGTGTTAAATAAAATTAGG+AGG | + | chr3_4:48105643-48105662 | Msa0504120:intron | 30.0% | |
| !! | CAAGAATTTTGTGTTGCTAA+AGG | - | chr3_4:48105710-48105729 | None:intergenic | 30.0% |
| GGTCCAAATTTAATCACTAA+AGG | + | chr3_4:48106138-48106157 | Msa0504120:intron | 30.0% | |
| AGCCCTTTAGTGATTAAATT+TGG | - | chr3_4:48106144-48106163 | None:intergenic | 30.0% | |
| ! | AAGGGTGCAAATATGAAAAA+AGG | + | chr3_4:48106204-48106223 | Msa0504120:intron | 30.0% |
| AGGGTGCAAATATGAAAAAA+GGG | + | chr3_4:48106205-48106224 | Msa0504120:intron | 30.0% | |
| ATTAATTACCTTGAAGTCAG+GGG | - | chr3_4:48106612-48106631 | None:intergenic | 30.0% | |
| TAATATCAGCATTTGCAAAG+TGG | + | chr3_4:48106628-48106647 | Msa0504120:intron | 30.0% | |
| AACTGAATTCGAATTCTAGT+TGG | + | chr3_4:48106701-48106720 | Msa0504120:intron | 30.0% | |
| TCAGAAATGTAAGTAAAGTC+TGG | - | chr3_4:48106745-48106764 | None:intergenic | 30.0% | |
| AAATGTAGGGTGATTACTAA+TGG | + | chr3_4:48106951-48106970 | Msa0504120:CDS | 30.0% | |
| AACAATTCACGAACGTTAAA+GGG | - | chr3_4:48107002-48107021 | None:intergenic | 30.0% | |
| AAACAATTCACGAACGTTAA+AGG | - | chr3_4:48107003-48107022 | None:intergenic | 30.0% | |
| TTTAACGTTCGTGAATTGTT+TGG | + | chr3_4:48107002-48107021 | Msa0504120:CDS | 30.0% | |
| ATCTTCTTAATCTCATCTCT+TGG | - | chr3_4:48105149-48105168 | None:intergenic | 30.0% | |
| CGTGAACAATTACAAGAATT+TGG | + | chr3_4:48105170-48105189 | Msa0504120:CDS | 30.0% | |
| ! | TCTTTTCTTTTGTCTGCTTA+TGG | - | chr3_4:48105243-48105262 | None:intergenic | 30.0% |
| GAAAGATGATGAAGATGATT+TGG | - | chr3_4:48105345-48105364 | None:intergenic | 30.0% | |
| TGACATATTATGGTTTCACT+GGG | - | chr3_4:48105389-48105408 | None:intergenic | 30.0% | |
| ATGACATATTATGGTTTCAC+TGG | - | chr3_4:48105390-48105409 | None:intergenic | 30.0% | |
| GAAGAAATATAACCTGACAA+TGG | + | chr3_4:48105621-48105640 | Msa0504120:intron | 30.0% | |
| GCGTGTTAAATAAAATTAGG+AGG | + | chr3_4:48105643-48105662 | Msa0504120:intron | 30.0% | |
| !! | CAAGAATTTTGTGTTGCTAA+AGG | - | chr3_4:48105710-48105729 | None:intergenic | 30.0% |
| GGTCCAAATTTAATCACTAA+AGG | + | chr3_4:48106138-48106157 | Msa0504120:intron | 30.0% | |
| AGCCCTTTAGTGATTAAATT+TGG | - | chr3_4:48106144-48106163 | None:intergenic | 30.0% | |
| ! | AAGGGTGCAAATATGAAAAA+AGG | + | chr3_4:48106204-48106223 | Msa0504120:intron | 30.0% |
| AGGGTGCAAATATGAAAAAA+GGG | + | chr3_4:48106205-48106224 | Msa0504120:intron | 30.0% | |
| ATTAATTACCTTGAAGTCAG+GGG | - | chr3_4:48106612-48106631 | None:intergenic | 30.0% | |
| TAATATCAGCATTTGCAAAG+TGG | + | chr3_4:48106628-48106647 | Msa0504120:intron | 30.0% | |
| AACTGAATTCGAATTCTAGT+TGG | + | chr3_4:48106701-48106720 | Msa0504120:intron | 30.0% | |
| TCAGAAATGTAAGTAAAGTC+TGG | - | chr3_4:48106745-48106764 | None:intergenic | 30.0% | |
| AAATGTAGGGTGATTACTAA+TGG | + | chr3_4:48106951-48106970 | Msa0504120:CDS | 30.0% | |
| AACAATTCACGAACGTTAAA+GGG | - | chr3_4:48107002-48107021 | None:intergenic | 30.0% | |
| AAACAATTCACGAACGTTAA+AGG | - | chr3_4:48107003-48107022 | None:intergenic | 30.0% | |
| TTTAACGTTCGTGAATTGTT+TGG | + | chr3_4:48107002-48107021 | Msa0504120:CDS | 30.0% | |
| TTCTTAATCTCATCTCTTGG+TGG | - | chr3_4:48105146-48105165 | None:intergenic | 35.0% | |
| GAATTATTAGGAGTTCCGTT+TGG | - | chr3_4:48105296-48105315 | None:intergenic | 35.0% | |
| ! | GATGATGAAGATGATTTGGA+AGG | - | chr3_4:48105341-48105360 | None:intergenic | 35.0% |
| TTATTTAACACGCCATTGTC+AGG | - | chr3_4:48105636-48105655 | None:intergenic | 35.0% | |
| TATTCGTTCAAGACTAGAAG+AGG | - | chr3_4:48105687-48105706 | None:intergenic | 35.0% | |
| ! | AGGCATTAAAGTGCCAAAAA+TGG | + | chr3_4:48106028-48106047 | Msa0504120:intron | 35.0% |
| ! | AAAATTAAAGTTGGCTCAGC+TGG | + | chr3_4:48106085-48106104 | Msa0504120:intron | 35.0% |
| ATGGACCAATTGATGTATCA+AGG | + | chr3_4:48106115-48106134 | Msa0504120:intron | 35.0% | |
| TGGACCAATTGATGTATCAA+GGG | + | chr3_4:48106116-48106135 | Msa0504120:intron | 35.0% | |
| GGGTGCAAATATGAAAAAAG+GGG | + | chr3_4:48106206-48106225 | Msa0504120:intron | 35.0% | |
| ! | TTGTTGTTCAACGTGAAGAA+AGG | - | chr3_4:48106315-48106334 | None:intergenic | 35.0% |
| ACTAAATGAAGTCATGCACA+TGG | - | chr3_4:48106846-48106865 | None:intergenic | 35.0% | |
| TGTGTGTGTTTGTCAAGTTT+CGG | + | chr3_4:48106909-48106928 | Msa0504120:CDS | 35.0% | |
| TTCTTAATCTCATCTCTTGG+TGG | - | chr3_4:48105146-48105165 | None:intergenic | 35.0% | |
| GAATTATTAGGAGTTCCGTT+TGG | - | chr3_4:48105296-48105315 | None:intergenic | 35.0% | |
| ! | GATGATGAAGATGATTTGGA+AGG | - | chr3_4:48105341-48105360 | None:intergenic | 35.0% |
| TTATTTAACACGCCATTGTC+AGG | - | chr3_4:48105636-48105655 | None:intergenic | 35.0% | |
| TATTCGTTCAAGACTAGAAG+AGG | - | chr3_4:48105687-48105706 | None:intergenic | 35.0% | |
| ! | AGGCATTAAAGTGCCAAAAA+TGG | + | chr3_4:48106028-48106047 | Msa0504120:intron | 35.0% |
| ! | AAAATTAAAGTTGGCTCAGC+TGG | + | chr3_4:48106085-48106104 | Msa0504120:intron | 35.0% |
| ATGGACCAATTGATGTATCA+AGG | + | chr3_4:48106115-48106134 | Msa0504120:intron | 35.0% | |
| TGGACCAATTGATGTATCAA+GGG | + | chr3_4:48106116-48106135 | Msa0504120:intron | 35.0% | |
| GGGTGCAAATATGAAAAAAG+GGG | + | chr3_4:48106206-48106225 | Msa0504120:intron | 35.0% | |
| ! | TTGTTGTTCAACGTGAAGAA+AGG | - | chr3_4:48106315-48106334 | None:intergenic | 35.0% |
| ACTAAATGAAGTCATGCACA+TGG | - | chr3_4:48106846-48106865 | None:intergenic | 35.0% | |
| TGTGTGTGTTTGTCAAGTTT+CGG | + | chr3_4:48106909-48106928 | Msa0504120:CDS | 35.0% | |
| TTTGTCTGCTTATGGACTTG+CGG | - | chr3_4:48105235-48105254 | None:intergenic | 40.0% | |
| ! | TTTCTGGTCTCTTGTTGTAG+GGG | - | chr3_4:48105268-48105287 | None:intergenic | 40.0% |
| !! | GTTTCTGGTCTCTTGTTGTA+GGG | - | chr3_4:48105269-48105288 | None:intergenic | 40.0% |
| !! | TGTTTCTGGTCTCTTGTTGT+AGG | - | chr3_4:48105270-48105289 | None:intergenic | 40.0% |
| AGACCAGAAACACAACCAAA+CGG | + | chr3_4:48105278-48105297 | Msa0504120:CDS | 40.0% | |
| ! | GATGAAGATGATTTGGAAGG+AGG | - | chr3_4:48105338-48105357 | None:intergenic | 40.0% |
| TATTATGGTTTCACTGGGAG+AGG | - | chr3_4:48105384-48105403 | None:intergenic | 40.0% | |
| TATTGGTCAACTTCAAGCAG+TGG | + | chr3_4:48105413-48105432 | Msa0504120:intron | 40.0% | |
| TGGCTCAGCTGGATTAAATA+TGG | + | chr3_4:48106096-48106115 | Msa0504120:intron | 40.0% | |
| GGACCAATTGATGTATCAAG+GGG | + | chr3_4:48106117-48106136 | Msa0504120:intron | 40.0% | |
| GTGCAAAAGCAACAGCATAT+AGG | + | chr3_4:48106228-48106247 | Msa0504120:intron | 40.0% | |
| AGCATATAGGACAAAACTGC+AGG | + | chr3_4:48106241-48106260 | Msa0504120:intron | 40.0% | |
| ATATAGGACAAAACTGCAGG+TGG | + | chr3_4:48106244-48106263 | Msa0504120:intron | 40.0% | |
| TATAGGACAAAACTGCAGGT+GGG | + | chr3_4:48106245-48106264 | Msa0504120:intron | 40.0% | |
| ACGTGAAGAAAGGAAGAAGA+AGG | - | chr3_4:48106305-48106324 | None:intergenic | 40.0% | |
| GCGTGAAAATCCAAGCAAAA+TGG | - | chr3_4:48106406-48106425 | None:intergenic | 40.0% | |
| GTGTTTGTCAAGTTTCGGTA+AGG | + | chr3_4:48106914-48106933 | Msa0504120:CDS | 40.0% | |
| TCAAGTTTCGGTAAGGAAGA+TGG | + | chr3_4:48106921-48106940 | Msa0504120:CDS | 40.0% | |
| TTTCGGTAAGGAAGATGGTA+CGG | + | chr3_4:48106926-48106945 | Msa0504120:CDS | 40.0% | |
| AAGATGGTACGGCAAAATGT+AGG | + | chr3_4:48106937-48106956 | Msa0504120:CDS | 40.0% | |
| AGATGGTACGGCAAAATGTA+GGG | + | chr3_4:48106938-48106957 | Msa0504120:CDS | 40.0% | |
| GCAGTTCTATTTGACTCCTT+TGG | + | chr3_4:48107032-48107051 | Msa0504120:CDS | 40.0% | |
| TTTGTCTGCTTATGGACTTG+CGG | - | chr3_4:48105235-48105254 | None:intergenic | 40.0% | |
| ! | TTTCTGGTCTCTTGTTGTAG+GGG | - | chr3_4:48105268-48105287 | None:intergenic | 40.0% |
| !! | GTTTCTGGTCTCTTGTTGTA+GGG | - | chr3_4:48105269-48105288 | None:intergenic | 40.0% |
| !! | TGTTTCTGGTCTCTTGTTGT+AGG | - | chr3_4:48105270-48105289 | None:intergenic | 40.0% |
| AGACCAGAAACACAACCAAA+CGG | + | chr3_4:48105278-48105297 | Msa0504120:CDS | 40.0% | |
| ! | GATGAAGATGATTTGGAAGG+AGG | - | chr3_4:48105338-48105357 | None:intergenic | 40.0% |
| TATTATGGTTTCACTGGGAG+AGG | - | chr3_4:48105384-48105403 | None:intergenic | 40.0% | |
| TATTGGTCAACTTCAAGCAG+TGG | + | chr3_4:48105413-48105432 | Msa0504120:intron | 40.0% | |
| TGGCTCAGCTGGATTAAATA+TGG | + | chr3_4:48106096-48106115 | Msa0504120:intron | 40.0% | |
| GGACCAATTGATGTATCAAG+GGG | + | chr3_4:48106117-48106136 | Msa0504120:intron | 40.0% | |
| GTGCAAAAGCAACAGCATAT+AGG | + | chr3_4:48106228-48106247 | Msa0504120:intron | 40.0% | |
| AGCATATAGGACAAAACTGC+AGG | + | chr3_4:48106241-48106260 | Msa0504120:intron | 40.0% | |
| ATATAGGACAAAACTGCAGG+TGG | + | chr3_4:48106244-48106263 | Msa0504120:intron | 40.0% | |
| TATAGGACAAAACTGCAGGT+GGG | + | chr3_4:48106245-48106264 | Msa0504120:intron | 40.0% | |
| ACGTGAAGAAAGGAAGAAGA+AGG | - | chr3_4:48106305-48106324 | None:intergenic | 40.0% | |
| GCGTGAAAATCCAAGCAAAA+TGG | - | chr3_4:48106406-48106425 | None:intergenic | 40.0% | |
| GTGTTTGTCAAGTTTCGGTA+AGG | + | chr3_4:48106914-48106933 | Msa0504120:CDS | 40.0% | |
| TCAAGTTTCGGTAAGGAAGA+TGG | + | chr3_4:48106921-48106940 | Msa0504120:CDS | 40.0% | |
| TTTCGGTAAGGAAGATGGTA+CGG | + | chr3_4:48106926-48106945 | Msa0504120:CDS | 40.0% | |
| AAGATGGTACGGCAAAATGT+AGG | + | chr3_4:48106937-48106956 | Msa0504120:CDS | 40.0% | |
| AGATGGTACGGCAAAATGTA+GGG | + | chr3_4:48106938-48106957 | Msa0504120:CDS | 40.0% | |
| GCAGTTCTATTTGACTCCTT+TGG | + | chr3_4:48107032-48107051 | Msa0504120:CDS | 40.0% | |
| TTTGGGCAACTTAGTGATGC+TGG | + | chr3_4:48105188-48105207 | Msa0504120:CDS | 45.0% | |
| ! | GTGATGCTGGTGTCTTTTAC+TGG | + | chr3_4:48105201-48105220 | Msa0504120:CDS | 45.0% |
| GTTCCGTTTGGTTGTGTTTC+TGG | - | chr3_4:48105284-48105303 | None:intergenic | 45.0% | |
| !!! | CCAGGATTTTTCTAGAGCCT+GGG | + | chr3_4:48105441-48105460 | Msa0504120:intron | 45.0% |
| TTCAAGACTAGAAGAGGTCG+CGG | - | chr3_4:48105681-48105700 | None:intergenic | 45.0% | |
| CTTCAACAAAACGGTCTTCG+CGG | + | chr3_4:48105732-48105751 | Msa0504120:intron | 45.0% | |
| GGACCCCTTGATACATCAAT+TGG | - | chr3_4:48106123-48106142 | None:intergenic | 45.0% | |
| ATAGAGAGAAAAGCAGAGCC+TGG | + | chr3_4:48106467-48106486 | Msa0504120:CDS | 45.0% | |
| TAGAGAGAAAAGCAGAGCCT+GGG | + | chr3_4:48106468-48106487 | Msa0504120:CDS | 45.0% | |
| !! | TGCTTTACTTGCTTTTGCCC+AGG | - | chr3_4:48106488-48106507 | None:intergenic | 45.0% |
| GTAAAGCAGAAGCAGAAGCA+TGG | + | chr3_4:48106500-48106519 | Msa0504120:CDS | 45.0% | |
| AATTACCTTGAAGTCAGGGG+CGG | - | chr3_4:48106609-48106628 | None:intergenic | 45.0% | |
| !! | TACTAATGGTGCCGTATTCG+AGG | + | chr3_4:48106965-48106984 | Msa0504120:CDS | 45.0% |
| TTTGGGCAACTTAGTGATGC+TGG | + | chr3_4:48105188-48105207 | Msa0504120:CDS | 45.0% | |
| ! | GTGATGCTGGTGTCTTTTAC+TGG | + | chr3_4:48105201-48105220 | Msa0504120:CDS | 45.0% |
| GTTCCGTTTGGTTGTGTTTC+TGG | - | chr3_4:48105284-48105303 | None:intergenic | 45.0% | |
| !!! | CCAGGATTTTTCTAGAGCCT+GGG | + | chr3_4:48105441-48105460 | Msa0504120:intron | 45.0% |
| TTCAAGACTAGAAGAGGTCG+CGG | - | chr3_4:48105681-48105700 | None:intergenic | 45.0% | |
| CTTCAACAAAACGGTCTTCG+CGG | + | chr3_4:48105732-48105751 | Msa0504120:intron | 45.0% | |
| GGACCCCTTGATACATCAAT+TGG | - | chr3_4:48106123-48106142 | None:intergenic | 45.0% | |
| ATAGAGAGAAAAGCAGAGCC+TGG | + | chr3_4:48106467-48106486 | Msa0504120:CDS | 45.0% | |
| TAGAGAGAAAAGCAGAGCCT+GGG | + | chr3_4:48106468-48106487 | Msa0504120:CDS | 45.0% | |
| !! | TGCTTTACTTGCTTTTGCCC+AGG | - | chr3_4:48106488-48106507 | None:intergenic | 45.0% |
| GTAAAGCAGAAGCAGAAGCA+TGG | + | chr3_4:48106500-48106519 | Msa0504120:CDS | 45.0% | |
| AATTACCTTGAAGTCAGGGG+CGG | - | chr3_4:48106609-48106628 | None:intergenic | 45.0% | |
| !! | TACTAATGGTGCCGTATTCG+AGG | + | chr3_4:48106965-48106984 | Msa0504120:CDS | 45.0% |
| TGGTCAACTTCAAGCAGTGG+CGG | + | chr3_4:48105416-48105435 | Msa0504120:intron | 50.0% | |
| !!! | GCCAGGATTTTTCTAGAGCC+TGG | + | chr3_4:48105440-48105459 | Msa0504120:intron | 50.0% |
| !! | CCCAGGCTCTAGAAAAATCC+TGG | - | chr3_4:48105444-48105463 | None:intergenic | 50.0% |
| TCGGGATACAAATTTCGCCC+AGG | - | chr3_4:48105461-48105480 | None:intergenic | 50.0% | |
| ACTAGAAGAGGTCGCGGAAA+GGG | - | chr3_4:48105675-48105694 | None:intergenic | 50.0% | |
| AAGCATGGAGTCGCGACTAA+TGG | + | chr3_4:48106515-48106534 | Msa0504120:CDS | 50.0% | |
| AGCATGGAGTCGCGACTAAT+GGG | + | chr3_4:48106516-48106535 | Msa0504120:CDS | 50.0% | |
| AGTAAAGCAGAAGCAGAGCC+TGG | + | chr3_4:48106553-48106572 | Msa0504120:intron | 50.0% | |
| GTAAAGCAGAAGCAGAGCCT+GGG | + | chr3_4:48106554-48106573 | Msa0504120:intron | 50.0% | |
| ATGCACATGGCACATGTCCA+TGG | - | chr3_4:48106833-48106852 | None:intergenic | 50.0% | |
| CCCTGCATGAACCTCGAATA+CGG | - | chr3_4:48106979-48106998 | None:intergenic | 50.0% | |
| CCGTATTCGAGGTTCATGCA+GGG | + | chr3_4:48106976-48106995 | Msa0504120:CDS | 50.0% | |
| TTTGACTCCTTTGGTACCCC+CGG | + | chr3_4:48107041-48107060 | Msa0504120:CDS | 50.0% | |
| TGGTCAACTTCAAGCAGTGG+CGG | + | chr3_4:48105416-48105435 | Msa0504120:intron | 50.0% | |
| !!! | GCCAGGATTTTTCTAGAGCC+TGG | + | chr3_4:48105440-48105459 | Msa0504120:intron | 50.0% |
| !! | CCCAGGCTCTAGAAAAATCC+TGG | - | chr3_4:48105444-48105463 | None:intergenic | 50.0% |
| TCGGGATACAAATTTCGCCC+AGG | - | chr3_4:48105461-48105480 | None:intergenic | 50.0% | |
| ACTAGAAGAGGTCGCGGAAA+GGG | - | chr3_4:48105675-48105694 | None:intergenic | 50.0% | |
| AAGCATGGAGTCGCGACTAA+TGG | + | chr3_4:48106515-48106534 | Msa0504120:CDS | 50.0% | |
| AGCATGGAGTCGCGACTAAT+GGG | + | chr3_4:48106516-48106535 | Msa0504120:CDS | 50.0% | |
| AGTAAAGCAGAAGCAGAGCC+TGG | + | chr3_4:48106553-48106572 | Msa0504120:intron | 50.0% | |
| GTAAAGCAGAAGCAGAGCCT+GGG | + | chr3_4:48106554-48106573 | Msa0504120:intron | 50.0% | |
| ATGCACATGGCACATGTCCA+TGG | - | chr3_4:48106833-48106852 | None:intergenic | 50.0% | |
| CCCTGCATGAACCTCGAATA+CGG | - | chr3_4:48106979-48106998 | None:intergenic | 50.0% | |
| CCGTATTCGAGGTTCATGCA+GGG | + | chr3_4:48106976-48106995 | Msa0504120:CDS | 50.0% | |
| TTTGACTCCTTTGGTACCCC+CGG | + | chr3_4:48107041-48107060 | Msa0504120:CDS | 50.0% | |
| GACTAGAAGAGGTCGCGGAA+AGG | - | chr3_4:48105676-48105695 | None:intergenic | 55.0% | |
| CTTCCTTCCTTGTTGACCGC+GGG | - | chr3_4:48106272-48106291 | None:intergenic | 55.0% | |
| CCTTCCTTCCTTGTTGACCG+CGG | - | chr3_4:48106273-48106292 | None:intergenic | 55.0% | |
| CGGTCAACAAGGAAGGAAGG+AGG | + | chr3_4:48106273-48106292 | Msa0504120:intron | 55.0% | |
| ! | TGGAGTCGCGACTAATGGGT+TGG | + | chr3_4:48106520-48106539 | Msa0504120:intron | 55.0% |
| !! | GGAGTCGCGACTAATGGGTT+GGG | + | chr3_4:48106521-48106540 | Msa0504120:intron | 55.0% |
| TGAAACCGCCCCTGACTTCA+AGG | + | chr3_4:48106601-48106620 | Msa0504120:intron | 55.0% | |
| GCCGTATTCGAGGTTCATGC+AGG | + | chr3_4:48106975-48106994 | Msa0504120:CDS | 55.0% | |
| !! | GTTAGAACCGGGGGTACCAA+AGG | - | chr3_4:48107051-48107070 | None:intergenic | 55.0% |
| GACTAGAAGAGGTCGCGGAA+AGG | - | chr3_4:48105676-48105695 | None:intergenic | 55.0% | |
| CTTCCTTCCTTGTTGACCGC+GGG | - | chr3_4:48106272-48106291 | None:intergenic | 55.0% | |
| CCTTCCTTCCTTGTTGACCG+CGG | - | chr3_4:48106273-48106292 | None:intergenic | 55.0% | |
| CGGTCAACAAGGAAGGAAGG+AGG | + | chr3_4:48106273-48106292 | Msa0504120:intron | 55.0% | |
| ! | TGGAGTCGCGACTAATGGGT+TGG | + | chr3_4:48106520-48106539 | Msa0504120:intron | 55.0% |
| !! | GGAGTCGCGACTAATGGGTT+GGG | + | chr3_4:48106521-48106540 | Msa0504120:intron | 55.0% |
| TGAAACCGCCCCTGACTTCA+AGG | + | chr3_4:48106601-48106620 | Msa0504120:intron | 55.0% | |
| GCCGTATTCGAGGTTCATGC+AGG | + | chr3_4:48106975-48106994 | Msa0504120:CDS | 55.0% | |
| !! | GTTAGAACCGGGGGTACCAA+AGG | - | chr3_4:48107051-48107070 | None:intergenic | 55.0% |
| AAAACTGCAGGTGGGACCCG+CGG | + | chr3_4:48106253-48106272 | Msa0504120:intron | 60.0% | |
| CCGCGGTCAACAAGGAAGGA+AGG | + | chr3_4:48106270-48106289 | Msa0504120:intron | 60.0% | |
| TTTCACCCCCCAGCTAGGCT+GGG | - | chr3_4:48106586-48106605 | None:intergenic | 60.0% | |
| AAAACTGCAGGTGGGACCCG+CGG | + | chr3_4:48106253-48106272 | Msa0504120:intron | 60.0% | |
| CCGCGGTCAACAAGGAAGGA+AGG | + | chr3_4:48106270-48106289 | Msa0504120:intron | 60.0% | |
| TTTCACCCCCCAGCTAGGCT+GGG | - | chr3_4:48106586-48106605 | None:intergenic | 60.0% | |
| ! | CTTCAAGCAGTGGCGGAGCC+AGG | + | chr3_4:48105423-48105442 | Msa0504120:intron | 65.0% |
| GGACCCGCGGTCAACAAGGA+AGG | + | chr3_4:48106266-48106285 | Msa0504120:intron | 65.0% | |
| GGCACTAGCCCAGCCTAGCT+GGG | + | chr3_4:48106575-48106594 | Msa0504120:intron | 65.0% | |
| GCACTAGCCCAGCCTAGCTG+GGG | + | chr3_4:48106576-48106595 | Msa0504120:intron | 65.0% | |
| CACTAGCCCAGCCTAGCTGG+GGG | + | chr3_4:48106577-48106596 | Msa0504120:intron | 65.0% | |
| ACTAGCCCAGCCTAGCTGGG+GGG | + | chr3_4:48106578-48106597 | Msa0504120:intron | 65.0% | |
| GTTTCACCCCCCAGCTAGGC+TGG | - | chr3_4:48106587-48106606 | None:intergenic | 65.0% | |
| ! | CTTCAAGCAGTGGCGGAGCC+AGG | + | chr3_4:48105423-48105442 | Msa0504120:intron | 65.0% |
| GGACCCGCGGTCAACAAGGA+AGG | + | chr3_4:48106266-48106285 | Msa0504120:intron | 65.0% | |
| GGCACTAGCCCAGCCTAGCT+GGG | + | chr3_4:48106575-48106594 | Msa0504120:intron | 65.0% | |
| GCACTAGCCCAGCCTAGCTG+GGG | + | chr3_4:48106576-48106595 | Msa0504120:intron | 65.0% | |
| CACTAGCCCAGCCTAGCTGG+GGG | + | chr3_4:48106577-48106596 | Msa0504120:intron | 65.0% | |
| ACTAGCCCAGCCTAGCTGGG+GGG | + | chr3_4:48106578-48106597 | Msa0504120:intron | 65.0% | |
| GTTTCACCCCCCAGCTAGGC+TGG | - | chr3_4:48106587-48106606 | None:intergenic | 65.0% | |
| GGTGGGACCCGCGGTCAACA+AGG | + | chr3_4:48106262-48106281 | Msa0504120:intron | 70.0% | |
| !! | GCTAGGCTGGGCTAGTGCCC+AGG | - | chr3_4:48106574-48106593 | None:intergenic | 70.0% |
| GGGCACTAGCCCAGCCTAGC+TGG | + | chr3_4:48106574-48106593 | Msa0504120:intron | 70.0% | |
| GGCGGTTTCACCCCCCAGCT+AGG | - | chr3_4:48106591-48106610 | None:intergenic | 70.0% | |
| GGTGGGACCCGCGGTCAACA+AGG | + | chr3_4:48106262-48106281 | Msa0504120:intron | 70.0% | |
| !! | GCTAGGCTGGGCTAGTGCCC+AGG | - | chr3_4:48106574-48106593 | None:intergenic | 70.0% |
| GGGCACTAGCCCAGCCTAGC+TGG | + | chr3_4:48106574-48106593 | Msa0504120:intron | 70.0% | |
| GGCGGTTTCACCCCCCAGCT+AGG | - | chr3_4:48106591-48106610 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 48105134 | 48107076 | 48105134 | ID=Msa0504120;Name=Msa0504120 |
| chr3_4 | mRNA | 48105134 | 48107076 | 48105134 | ID=Msa0504120-mRNA-1;Parent=Msa0504120;Name=Msa0504120-mRNA-1;_AED=0.25;_eAED=0.28;_QI=0|0|0|0.66|1|1|3|0|176 |
| chr3_4 | exon | 48105134 | 48105389 | 48105134 | ID=Msa0504120-mRNA-1:exon:10377;Parent=Msa0504120-mRNA-1 |
| chr3_4 | exon | 48106456 | 48106537 | 48106456 | ID=Msa0504120-mRNA-1:exon:10378;Parent=Msa0504120-mRNA-1 |
| chr3_4 | exon | 48106884 | 48107076 | 48106884 | ID=Msa0504120-mRNA-1:exon:10379;Parent=Msa0504120-mRNA-1 |
| chr3_4 | CDS | 48105134 | 48105389 | 48105134 | ID=Msa0504120-mRNA-1:cds;Parent=Msa0504120-mRNA-1 |
| chr3_4 | CDS | 48106456 | 48106537 | 48106456 | ID=Msa0504120-mRNA-1:cds;Parent=Msa0504120-mRNA-1 |
| chr3_4 | CDS | 48106884 | 48107076 | 48106884 | ID=Msa0504120-mRNA-1:cds;Parent=Msa0504120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
