AlfalfaGEDB | Msa0504250

M. sativa cultivar zhongmu-4 / Msa0504250

KEGG: -
GO: -
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504250	XP_013460159.1	94.444	414	23	0	31	444	20	433	0.0	791

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504250	sp\|F4J0D2\|PBL36_ARATH	55.056	445	167	12	2	426	38	469	3.96e-153	446

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504250	A0A072V7N0	94.444	414	23	0	31	444	20	433	0.0	791

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504250	MtrunA17_Chr3g0104091	94.444	414	23	0	31	444	9	422	0.0	789
Msa0504250	MtrunA17_Chr6g0453001	87.198	414	45	1	30	443	17	422	0.0	727
Msa0504250	MtrunA17_Chr5g0416011	52.079	457	186	6	4	438	43	488	1.33e-152	442
Msa0504250	MtrunA17_Chr8g0362661	56.992	379	139	3	4	360	41	417	5.68e-151	438
Msa0504250	MtrunA17_Chr7g0216551	63.497	326	113	3	40	360	83	407	5.29e-149	432
Msa0504250	MtrunA17_Chr6g0452761	59.375	352	135	3	15	360	67	416	9.33e-142	414
Msa0504250	MtrunA17_Chr7g0238671	63.279	305	108	3	58	360	56	358	4.35e-138	402
Msa0504250	MtrunA17_Chr2g0328171	60.984	305	115	3	58	360	57	359	3.37e-137	399
Msa0504250	MtrunA17_Chr7g0245571	62.171	304	110	3	57	360	73	371	5.51e-136	397
Msa0504250	MtrunA17_Chr4g0064201	62.541	307	112	3	59	365	95	398	6.30e-136	398

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504250	AT3G28690.2	55.056	445	167	12	2	426	38	469	4.03e-154	446
Msa0504250	AT3G01300.1	58.245	376	136	5	4	360	46	419	1.02e-149	435
Msa0504250	AT5G15080.1	57.068	382	137	4	4	360	46	425	5.53e-149	433
Msa0504250	AT3G28690.1	59.947	377	135	8	54	426	5	369	6.95e-149	429
Msa0504250	AT3G28690.3	59.947	377	135	8	54	426	54	418	2.69e-148	429
Msa0504250	AT1G07570.1	56.425	358	150	4	14	367	5	360	3.86e-138	402
Msa0504250	AT1G07570.5	56.425	358	150	4	14	367	5	360	3.86e-138	402
Msa0504250	AT1G07570.2	56.425	358	150	4	14	367	5	360	3.86e-138	402
Msa0504250	AT2G28930.1	55.372	363	156	4	4	364	11	369	5.77e-138	402
Msa0504250	AT2G28930.2	62.338	308	112	3	59	364	53	358	1.43e-136	399

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 97 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATATACATCACTCT+TGG	0.531503	3_4:-48470291	None:intergenic
AAAGGAGGAGTAAAGTTCAA+TGG	0.548574	3_4:-48470773	None:intergenic
AAAGGTTGGATAGGTCGAAA+TGG	0.451162	3_4:+48468191	Msa0504250:CDS
AACGATAATGGTGATGGCAT+TGG	0.542837	3_4:-48470608	None:intergenic
AAGAGAATGAAAATTATGCT+TGG	0.550255	3_4:+48469084	Msa0504250:CDS
AAGAGTGATGTATATAGTTT+TGG	0.393450	3_4:+48470293	Msa0504250:CDS
AAGGTTGGATAGGTCGAAAT+GGG	0.518582	3_4:+48468192	Msa0504250:CDS
AATAAATGTGGTCCTAAAAT+TGG	0.257809	3_4:+48470698	Msa0504250:CDS
AATGCAAAACTTTCTGACTT+TGG	0.330844	3_4:+48469284	Msa0504250:CDS
AATTCCTCTAGACATGTTGG+TGG	0.589626	3_4:+48470662	Msa0504250:CDS

Showing 1 to 10 of 97 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATAAACTCAAACAAGATTGG+AGG	-	chr3_4:48466345-48466364	None:intergenic	30.0%
CTTGATACATTTCACGAAAT+TGG	+	chr3_4:48466423-48466442	Msa0504250:intron	30.0%
AATTGATTGGAGATTGAGAT+CGG	+	chr3_4:48466501-48466520	Msa0504250:intron	30.0%
TATAAGCATGATTTGAACCT+AGG	+	chr3_4:48466533-48466552	Msa0504250:intron	30.0%
ATAAGCATGATTTGAACCTA+GGG	+	chr3_4:48466534-48466553	Msa0504250:intron	30.0%
ACTTCAAAATTAGGGATTCA+AGG	+	chr3_4:48466644-48466663	Msa0504250:intron	30.0%
CTTCAAAATTAGGGATTCAA+GGG	+	chr3_4:48466645-48466664	Msa0504250:intron	30.0%
TTTAGGAGATTTGAACTTTG+AGG	+	chr3_4:48467070-48467089	Msa0504250:intron	30.0%
TTTATGATAAGAATCAGAGG+GGG	-	chr3_4:48467135-48467154	None:intergenic	30.0%
GAATAATAATGTACACCACT+AGG	-	chr3_4:48468074-48468093	None:intergenic	30.0%

Showing 1 to 10 of 269 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	48466219	48470832	48466219	ID=Msa0504250;Name=Msa0504250
chr3_4	mRNA	48466219	48470832	48466219	ID=Msa0504250-mRNA-1;Parent=Msa0504250;Name=Msa0504250-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|6\|0\|444
chr3_4	exon	48466219	48466306	48466219	ID=Msa0504250-mRNA-1:exon:10412;Parent=Msa0504250-mRNA-1
chr3_4	exon	48468009	48468301	48468009	ID=Msa0504250-mRNA-1:exon:10413;Parent=Msa0504250-mRNA-1
chr3_4	exon	48468566	48468701	48468566	ID=Msa0504250-mRNA-1:exon:10414;Parent=Msa0504250-mRNA-1
chr3_4	exon	48469058	48469197	48469058	ID=Msa0504250-mRNA-1:exon:10415;Parent=Msa0504250-mRNA-1
chr3_4	exon	48469278	48469401	48469278	ID=Msa0504250-mRNA-1:exon:10416;Parent=Msa0504250-mRNA-1
chr3_4	exon	48470279	48470832	48470279	ID=Msa0504250-mRNA-1:exon:10417;Parent=Msa0504250-mRNA-1
chr3_4	CDS	48466219	48466306	48466219	ID=Msa0504250-mRNA-1:cds;Parent=Msa0504250-mRNA-1
chr3_4	CDS	48468009	48468301	48468009	ID=Msa0504250-mRNA-1:cds;Parent=Msa0504250-mRNA-1
chr3_4	CDS	48468566	48468701	48468566	ID=Msa0504250-mRNA-1:cds;Parent=Msa0504250-mRNA-1
chr3_4	CDS	48469058	48469197	48469058	ID=Msa0504250-mRNA-1:cds;Parent=Msa0504250-mRNA-1
chr3_4	CDS	48469278	48469401	48469278	ID=Msa0504250-mRNA-1:cds;Parent=Msa0504250-mRNA-1
chr3_4	CDS	48470279	48470832	48470279	ID=Msa0504250-mRNA-1:cds;Parent=Msa0504250-mRNA-1

Gene Sequence

>Msa0504250

ATGGCAAATTCAGGATTTTGGATGAAGGTTAAGTTTTTATTTAGTTGCATGTCCAAAAGCTCATCTCGTGGCAAGCACACACAAAATGATGATAAGGTCGTTGTTGGTGCTCAAAATTCTTCAACCAGCAGTAACACAAGATCACAAACTCCTAGTGGTGTACATTATTATTCCAATCTTAACCAATTTACGTATCAAGAACTTAAGTTAGCAACAGAACATTTCGCACCAGAATGTTTTCTTGGTGAGGGTGGATTTGGTTCTGTGTTCAAAGGTTGGATAGGTCGAAATGGGAGGATTTCTTCAAGACCTAGAATGGGGGTACCAGTTGCTGTAAAAACTTTAAACAAAGAAGGAAATCAAGGGCACAAAGAATGGCTTGCTGAAATTAACCATCTTGGTGCTCTTCAGCATCCAAATCTGGTTAGACTTGTTGGTTACTGCATTGAAGATGAAAATAGGCTGCTTGTTTATGAGTTCATGCCAAAAGGAAGTTTGGAAAATCATCTATTTAAGAGACGATCTGCACCCCTTACATGGGCTAAGAGAATGAAAATTATGCTTGGTGCTGCAAAAGGTCTTGCATTTCTGCATGAGGAAGCTGAGAAGCCAATCATATATAGAGATTTCAAAACTTCTAATATCCTATTGGATTCGGATTATAATGCAAAACTTTCTGACTTTGGGCTTGCTAAGGATGGTCCAATGGGAGACAAAACACATGTCTCAACACAAGTAGTAGGAACTCAAGGGTATGCTGATCCTGAATATGTCATGACAGGACACCTTAGTGCCAAGAGTGATGTATATAGTTTTGGTGTGGTTCTCCTGGAGATGTTAACCGGAAGAAAAGCAATTGATAGGAAAAGGCCGGAAAATGAACAAACCTTGATTGAATGGGTAAAACCCTTCTTAAAAAAACCTGGAGGAGGGTTCTGTGAAGTAATGGATCCAAGACTTCAAGAACAATATTCAAAAAGAGGAGCATACAAAGCCATGAAGATAGTTGCGCGTTGCGTTTACCGTGATAAAAAAGCAAGGCCTTTAATGAGTGAAGTTGTAAAGGAGCTCAAAACTATCATTGATTACAACAATGATATTCCTTCTTCACCAATGCCATCACCATTATCGTTTAAGGTCTTGCATGATGGCGCATCGTCTTCTAATTCCTCTAGACATGTTGGTGGCAGCAGCAGTGCTAATAAATGTGGTCCTAAAATTGGTTCATCATCTTCAGCTTCAACTCCATCAACTCCAGCCCGATTTAAGGATTCACCATTGAACTTTACTCCTCCTTTGCTTTCTCCGAATCCTCCTCGTGGTGGAAATCCATGA

Protein sequence

>Msa0504250

MANSGFWMKVKFLFSCMSKSSSRGKHTQNDDKVVVGAQNSSTSSNTRSQTPSGVHYYSNLNQFTYQELKLATEHFAPECFLGEGGFGSVFKGWIGRNGRISSRPRMGVPVAVKTLNKEGNQGHKEWLAEINHLGALQHPNLVRLVGYCIEDENRLLVYEFMPKGSLENHLFKRRSAPLTWAKRMKIMLGAAKGLAFLHEEAEKPIIYRDFKTSNILLDSDYNAKLSDFGLAKDGPMGDKTHVSTQVVGTQGYADPEYVMTGHLSAKSDVYSFGVVLLEMLTGRKAIDRKRPENEQTLIEWVKPFLKKPGGGFCEVMDPRLQEQYSKRGAYKAMKIVARCVYRDKKARPLMSEVVKELKTIIDYNNDIPSSPMPSPLSFKVLHDGASSSNSSRHVGGSSSANKCGPKIGSSSSASTPSTPARFKDSPLNFTPPLLSPNPPRGGNP*