AlfalfaGEDB | Msa0504420

M. sativa cultivar zhongmu-4 / Msa0504420

KEGG: -
GO: -
PFAM: PF04969.19

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504420	KEH34246.1	97.260	219	6	0	136	354	1	219	3.51e-154	442

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504420	sp\|P05332\|YP20_BACLI	35.795	176	96	5	142	308	8	175	3.95e-18	84.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504420	A0A072UXR7	97.260	219	6	0	136	354	1	219	1.68e-154	442

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0504420	TR	GNAT

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504420	MtrunA17_Chr3g0104601	100.000	130	0	0	1	130	1	130	1.36e-93	276
Msa0504420	MtrunA17_Chr7g0273661	63.462	156	54	1	138	293	4	156	3.56e-71	219
Msa0504420	MtrunA17_Chr7g0223351	53.571	168	73	2	141	308	7	169	1.34e-52	172
Msa0504420	MtrunA17_Chr7g0223361	49.123	171	83	2	138	308	4	170	2.66e-49	163
Msa0504420	MtrunA17_Chr1g0204951	43.548	186	93	3	128	310	13	189	5.50e-46	155
Msa0504420	MtrunA17_Chr1g0204971	44.262	183	90	3	129	308	14	187	2.68e-44	150
Msa0504420	MtrunA17_Chr5g0394621	40.351	171	102	0	138	308	17	187	5.29e-42	145
Msa0504420	MtrunA17_Chr5g0394631	41.566	166	97	0	137	302	16	181	1.96e-39	144
Msa0504420	MtrunA17_Chr5g0394631	39.378	193	111	4	119	308	209	398	1.26e-34	131
Msa0504420	MtrunA17_Chr1g0147101	30.097	103	71	1	21	122	138	240	1.18e-13	70.9

Showing 1 to 10 of 12 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504420	AT5G58740.1	85.385	130	19	0	1	130	1	130	2.54e-80	242
Msa0504420	AT2G32030.1	47.929	169	81	2	142	309	24	186	3.49e-55	179
Msa0504420	AT3G22560.1	49.714	175	83	3	136	308	1	172	1.51e-53	174
Msa0504420	AT2G32020.1	44.262	183	95	2	128	309	5	181	1.18e-48	162
Msa0504420	AT5G53400.1	28.155	103	73	1	21	122	147	249	5.86e-11	63.2

Showing 1 to 5 of 5 entries

Previous1Next

Find 108 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGAATCAGTCTTCA+CGG	0.510639	3_4:+48861800	None:intergenic
AAAGAAAAGTACCGTTGTGG+AGG	0.606940	3_4:+48862157	None:intergenic
AAAGAAGAATCAGTCTTCAC+GGG	0.572186	3_4:+48861801	None:intergenic
AAAGGTTGGGTTCCTTAGGG+AGG	0.565250	3_4:-48858331	Msa0504420:CDS
AACTGACCTTGACCTAATAT+GGG	0.540070	3_4:+48860674	None:intergenic
AACTTGTACGAAACATTGTT+TGG	0.384526	3_4:-48857152	Msa0504420:three_prime_UTR
AACTTTGAATAAGAGAGACA+AGG	0.665667	3_4:-48860714	Msa0504420:CDS
AAGGTTGGGTTCCTTAGGGA+GGG	0.621218	3_4:-48858330	Msa0504420:CDS
AATAGCTTGGAATGAACATT+TGG	0.367595	3_4:+48861994	None:intergenic
AATCGTACAGTAAAATAGCT+TGG	0.501286	3_4:+48861981	None:intergenic

Showing 1 to 10 of 108 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGTATTGAACAGGTAGAAA+TGG	+	chr3_4:48857152-48857171	None:intergenic	30.0%
CAGATATCTATGTATTGAAC+AGG	+	chr3_4:48857161-48857180	None:intergenic	30.0%
CGTGAAAAAAACAAAAACCA+AGG	-	chr3_4:48857184-48857203	Msa0504420:three_prime_UTR	30.0%
CAAAGACGAGTTTACAAAAA+TGG	-	chr3_4:48857325-48857344	Msa0504420:three_prime_UTR	30.0%
ATGGAATGAAATTGGAAAGA+TGG	+	chr3_4:48857409-48857428	None:intergenic	30.0%
AGAAATGAAATGGAATGGAA+TGG	+	chr3_4:48857428-48857447	None:intergenic	30.0%
AACCTGTTCTTCTTCAATTT+AGG	-	chr3_4:48857461-48857480	Msa0504420:CDS	30.0%
GTAAATATTGACCTCATCTA+GGG	+	chr3_4:48857513-48857532	None:intergenic	30.0%
TGTAAATATTGACCTCATCT+AGG	+	chr3_4:48857514-48857533	None:intergenic	30.0%
AATAGCTTGGAATGAACATT+TGG	+	chr3_4:48857548-48857567	None:intergenic	30.0%

Showing 1 to 10 of 394 entries

Previous1 2 3 4 5…40Next

Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	48857116	48862445	48857116	ID=Msa0504420;Name=Msa0504420
chr3_4	mRNA	48857116	48862445	48857116	ID=Msa0504420-mRNA-1;Parent=Msa0504420;Name=Msa0504420-mRNA-1;_AED=0.12;_eAED=0.12;_QI=228\|0.6\|0.66\|1\|1\|0.83\|6\|322\|354
chr3_4	exon	48857116	48857564	48857116	ID=Msa0504420-mRNA-1:exon:10520;Parent=Msa0504420-mRNA-1
chr3_4	exon	48858243	48858785	48858243	ID=Msa0504420-mRNA-1:exon:10519;Parent=Msa0504420-mRNA-1
chr3_4	exon	48860608	48860755	48860608	ID=Msa0504420-mRNA-1:exon:10518;Parent=Msa0504420-mRNA-1
chr3_4	exon	48861790	48861838	48861790	ID=Msa0504420-mRNA-1:exon:10517;Parent=Msa0504420-mRNA-1
chr3_4	exon	48861930	48862078	48861930	ID=Msa0504420-mRNA-1:exon:10516;Parent=Msa0504420-mRNA-1
chr3_4	exon	48862169	48862445	48862169	ID=Msa0504420-mRNA-1:exon:10515;Parent=Msa0504420-mRNA-1
chr3_4	five_prime_UTR	48862218	48862445	48862218	ID=Msa0504420-mRNA-1:five_prime_utr;Parent=Msa0504420-mRNA-1
chr3_4	CDS	48862169	48862217	48862169	ID=Msa0504420-mRNA-1:cds;Parent=Msa0504420-mRNA-1
chr3_4	CDS	48861930	48862078	48861930	ID=Msa0504420-mRNA-1:cds;Parent=Msa0504420-mRNA-1
chr3_4	CDS	48861790	48861838	48861790	ID=Msa0504420-mRNA-1:cds;Parent=Msa0504420-mRNA-1
chr3_4	CDS	48860608	48860755	48860608	ID=Msa0504420-mRNA-1:cds;Parent=Msa0504420-mRNA-1
chr3_4	CDS	48858243	48858785	48858243	ID=Msa0504420-mRNA-1:cds;Parent=Msa0504420-mRNA-1
chr3_4	CDS	48857438	48857564	48857438	ID=Msa0504420-mRNA-1:cds;Parent=Msa0504420-mRNA-1
chr3_4	three_prime_UTR	48857116	48857437	48857116	ID=Msa0504420-mRNA-1:three_prime_utr;Parent=Msa0504420-mRNA-1

Gene Sequence

>Msa0504420

ATGGCAGAAAAATTGGCACCAGAAAAGCGTCATATATTCCTCCACAACGGTCAAAAAGTGTTCGAATGGGATCAAACCCTAGATGAGGTCAATATTTACATCAATCTTCCGCCAAATGTTCATTCCAAGCTATTTTACTGTACGATTCAGTCCAAGCATATTGAACTTGGTATCAAAGGCAATCCTCCATTTCTCAATCATGATCTTACTTCTCCCGTGAAGACTGATTCTTCTTTTTGGACTTTAGAGGACGACATAATGCATATAACTTTGAATAAGAGAGACAAGGGTCAAACATGGCCTTCTCCCATATTAGGTCAAGGTCAGTTGGATGCTTACTCTACCGATCTTGAACAGAAACGCCTCATGCTTCAGAGATTTCAAGAGGAGGTAAGTATACTAGCTATGGCGATGAACTTGTCAAGAATCACCTTGCGGCCATTCGAATTGAGTGACGTAGACGATTTCATGTTAGTAGCAGGTGATGATAGAGTGACAAACTATACTAGACGGAAAAGTTTTGTTTCAAGGGAACAGGCTTTGTGTTACATCCAAGATGTGTGCATTCCTCACCCTTGGACTCGATCCATATGCATTGACAATCAAACTATCGGATTCATATCAATTTCTCCAGCTGGATCTGGTGATGATGATGATAGGTGTAGGGCTGAGATTGGCTATGCTTTAGCTGCTAACTATTGGGGTCAAGGTATATGCACCCAAGCAGTGAAAGTTGATGTATCACAAGTTTTCAAGGATATCCCTGATTTGGTTAGGATACAAGCTTTTGTTTCTGTGGAGAATCAAGCTTCTCAGAGGGTCTTGGAAAAGGTTGGGTTCCTTAGGGAGGGTATACTCAGAAAGTATTCGTATGTCAAAGGGATAGTTAAGGATGTAGCTATTTTTAGCCTTTTGTCAGAGGACGCTCATTCTCTACAAACCCGGGTTTTGATTTTTCACAAGCTCAATTTAGTGGAAACTGTCCTGATCCGAGGACCTTCATGGGTGGAATTCGATCAGATTGATCTCTGCCCCAAGAGTTTGTATTTGCCTACTGTAAGATGA

Protein sequence

>Msa0504420

MAEKLAPEKRHIFLHNGQKVFEWDQTLDEVNIYINLPPNVHSKLFYCTIQSKHIELGIKGNPPFLNHDLTSPVKTDSSFWTLEDDIMHITLNKRDKGQTWPSPILGQGQLDAYSTDLEQKRLMLQRFQEEVSILAMAMNLSRITLRPFELSDVDDFMLVAGDDRVTNYTRRKSFVSREQALCYIQDVCIPHPWTRSICIDNQTIGFISISPAGSGDDDDRCRAEIGYALAANYWGQGICTQAVKVDVSQVFKDIPDLVRIQAFVSVENQASQRVLEKVGFLREGILRKYSYVKGIVKDVAIFSLLSEDAHSLQTRVLIFHKLNLVETVLIRGPSWVEFDQIDLCPKSLYLPTVR*