Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504420 | KEH34246.1 | 97.260 | 219 | 6 | 0 | 136 | 354 | 1 | 219 | 3.51e-154 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504420 | sp|P05332|YP20_BACLI | 35.795 | 176 | 96 | 5 | 142 | 308 | 8 | 175 | 3.95e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504420 | A0A072UXR7 | 97.260 | 219 | 6 | 0 | 136 | 354 | 1 | 219 | 1.68e-154 | 442 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0504420 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504420 | MtrunA17_Chr3g0104601 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 1.36e-93 | 276 |
| Msa0504420 | MtrunA17_Chr7g0273661 | 63.462 | 156 | 54 | 1 | 138 | 293 | 4 | 156 | 3.56e-71 | 219 |
| Msa0504420 | MtrunA17_Chr7g0223351 | 53.571 | 168 | 73 | 2 | 141 | 308 | 7 | 169 | 1.34e-52 | 172 |
| Msa0504420 | MtrunA17_Chr7g0223361 | 49.123 | 171 | 83 | 2 | 138 | 308 | 4 | 170 | 2.66e-49 | 163 |
| Msa0504420 | MtrunA17_Chr1g0204951 | 43.548 | 186 | 93 | 3 | 128 | 310 | 13 | 189 | 5.50e-46 | 155 |
| Msa0504420 | MtrunA17_Chr1g0204971 | 44.262 | 183 | 90 | 3 | 129 | 308 | 14 | 187 | 2.68e-44 | 150 |
| Msa0504420 | MtrunA17_Chr5g0394621 | 40.351 | 171 | 102 | 0 | 138 | 308 | 17 | 187 | 5.29e-42 | 145 |
| Msa0504420 | MtrunA17_Chr5g0394631 | 41.566 | 166 | 97 | 0 | 137 | 302 | 16 | 181 | 1.96e-39 | 144 |
| Msa0504420 | MtrunA17_Chr5g0394631 | 39.378 | 193 | 111 | 4 | 119 | 308 | 209 | 398 | 1.26e-34 | 131 |
| Msa0504420 | MtrunA17_Chr1g0147101 | 30.097 | 103 | 71 | 1 | 21 | 122 | 138 | 240 | 1.18e-13 | 70.9 |
| Msa0504420 | MtrunA17_Chr1g0147081 | 28.455 | 123 | 80 | 3 | 3 | 122 | 118 | 235 | 1.52e-12 | 67.4 |
| Msa0504420 | MtrunA17_Chr1g0147091 | 29.126 | 103 | 72 | 1 | 21 | 122 | 133 | 235 | 7.52e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504420 | AT5G58740.1 | 85.385 | 130 | 19 | 0 | 1 | 130 | 1 | 130 | 2.54e-80 | 242 |
| Msa0504420 | AT2G32030.1 | 47.929 | 169 | 81 | 2 | 142 | 309 | 24 | 186 | 3.49e-55 | 179 |
| Msa0504420 | AT3G22560.1 | 49.714 | 175 | 83 | 3 | 136 | 308 | 1 | 172 | 1.51e-53 | 174 |
| Msa0504420 | AT2G32020.1 | 44.262 | 183 | 95 | 2 | 128 | 309 | 5 | 181 | 1.18e-48 | 162 |
| Msa0504420 | AT5G53400.1 | 28.155 | 103 | 73 | 1 | 21 | 122 | 147 | 249 | 5.86e-11 | 63.2 |
Find 108 sgRNAs with CRISPR-Local
Find 394 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTGACCTTGACCTAATA+TGG | 0.170521 | 3_4:+48860673 | None:intergenic |
| TGCTTTAGCTGCTAACTATT+GGG | 0.244053 | 3_4:-48858478 | Msa0504420:CDS |
| GAAAATAAGCATTTGTTTAC+CGG | 0.279599 | 3_4:-48862316 | Msa0504420:five_prime_UTR |
| ATGCTTTAGCTGCTAACTAT+TGG | 0.297415 | 3_4:-48858479 | Msa0504420:CDS |
| AGAAATGGAGGCATCTTAAA+TGG | 0.313546 | 3_4:+48862405 | None:intergenic |
| TTTCAAGGATATCCCTGATT+TGG | 0.317746 | 3_4:-48858409 | Msa0504420:CDS |
| TGGAAAAGGTTGGGTTCCTT+AGG | 0.326822 | 3_4:-48858335 | Msa0504420:CDS |
| ATAGGACTTCAAATCAAAAT+AGG | 0.331911 | 3_4:+48857194 | None:intergenic |
| GCTTGTATCCTAACCAAATC+AGG | 0.336296 | 3_4:+48858396 | None:intergenic |
| ACATGGCCTTCTCCCATATT+AGG | 0.341483 | 3_4:-48860686 | Msa0504420:CDS |
| CTCTAATAACAACAGACTTT+TGG | 0.347860 | 3_4:-48857327 | Msa0504420:three_prime_UTR |
| TGTAAATATTGACCTCATCT+AGG | 0.350522 | 3_4:+48862028 | None:intergenic |
| ATCTTTCGACTGCCCTTTGT+TGG | 0.361092 | 3_4:-48857287 | Msa0504420:three_prime_UTR |
| AGTTTGATTGTCAATGCATA+TGG | 0.363098 | 3_4:+48858572 | None:intergenic |
| AATAGCTTGGAATGAACATT+TGG | 0.367595 | 3_4:+48861994 | None:intergenic |
| AACTTGTACGAAACATTGTT+TGG | 0.384526 | 3_4:-48857152 | Msa0504420:three_prime_UTR |
| TCCTGATCCGAGGACCTTCA+TGG | 0.398170 | 3_4:-48857498 | Msa0504420:CDS |
| CAGTCCAAGCATATTGAACT+TGG | 0.399137 | 3_4:-48861958 | Msa0504420:CDS |
| AGGATATCCCTGATTTGGTT+AGG | 0.407728 | 3_4:-48858404 | Msa0504420:CDS |
| TCAAGCTTCTCAGAGGGTCT+TGG | 0.410928 | 3_4:-48858355 | Msa0504420:CDS |
| ATTAGGGTTACATTGAGAAA+TGG | 0.412790 | 3_4:+48861919 | None:intergenic |
| CAGAGGGTCTTGGAAAAGGT+TGG | 0.423528 | 3_4:-48858345 | Msa0504420:CDS |
| TACATCAACTTTCACTGCTT+GGG | 0.425264 | 3_4:+48858440 | None:intergenic |
| CCCATGAAGGTCCTCGGATC+AGG | 0.426096 | 3_4:+48857497 | None:intergenic |
| TTCTCAGAGGGTCTTGGAAA+AGG | 0.427404 | 3_4:-48858349 | Msa0504420:CDS |
| ATGTATTGAACAGGTAGAAA+TGG | 0.430944 | 3_4:+48862390 | None:intergenic |
| GATACCAAGTTCAATATGCT+TGG | 0.433465 | 3_4:+48861954 | None:intergenic |
| GTAGGCAAATACAAACTCTT+GGG | 0.433903 | 3_4:+48857448 | None:intergenic |
| TTCATATCAATTTCTCCAGC+TGG | 0.435051 | 3_4:-48858543 | Msa0504420:CDS |
| CAGATATCTATGTATTGAAC+AGG | 0.442468 | 3_4:+48862381 | None:intergenic |
| GGAAAAGGTTGGGTTCCTTA+GGG | 0.443455 | 3_4:-48858334 | Msa0504420:CDS |
| AGAGATTTCAAGAGGAGGTA+AGG | 0.445199 | 3_4:-48860607 | Msa0504420:intron |
| GGTGAGGAATGCACACATCT+TGG | 0.460078 | 3_4:+48858607 | None:intergenic |
| TCAATTTCTCCAGCTGGATC+TGG | 0.461550 | 3_4:-48858537 | Msa0504420:CDS |
| AGAGGGTCTTGGAAAAGGTT+GGG | 0.465531 | 3_4:-48858344 | Msa0504420:CDS |
| GTAAATATTGACCTCATCTA+GGG | 0.477378 | 3_4:+48862029 | None:intergenic |
| GACGATTTCATGTTAGTAGC+AGG | 0.480032 | 3_4:-48858699 | Msa0504420:CDS |
| AGTAGGCAAATACAAACTCT+TGG | 0.482411 | 3_4:+48857447 | None:intergenic |
| CATATTGAACTTGGTATCAA+AGG | 0.483096 | 3_4:-48861949 | Msa0504420:CDS |
| ATACATCAACTTTCACTGCT+TGG | 0.484180 | 3_4:+48858439 | None:intergenic |
| TAACTTTAAATGCCAACAAA+GGG | 0.488252 | 3_4:+48857275 | None:intergenic |
| AATGAGCTGTGTAATCCCTT+TGG | 0.494144 | 3_4:-48857405 | Msa0504420:three_prime_UTR |
| CAACTTGTAATATCAACCCT+TGG | 0.497463 | 3_4:+48862338 | None:intergenic |
| TTCATTCAGTATACTAGCTA+TGG | 0.500515 | 3_4:-48858772 | Msa0504420:intron |
| AATCGTACAGTAAAATAGCT+TGG | 0.501286 | 3_4:+48861981 | None:intergenic |
| GAAAGTATTCGTATGTCAAA+GGG | 0.501311 | 3_4:-48858299 | Msa0504420:CDS |
| AGAAAGTATTCGTATGTCAA+AGG | 0.504196 | 3_4:-48858300 | Msa0504420:CDS |
| CCTGATCCGAGGACCTTCAT+GGG | 0.504487 | 3_4:-48857497 | Msa0504420:CDS |
| AGCTTGGAATGAACATTTGG+CGG | 0.504888 | 3_4:+48861997 | None:intergenic |
| GATCTGGTGATGATGATGAT+AGG | 0.507122 | 3_4:-48858521 | Msa0504420:CDS |
| AAAAGAAGAATCAGTCTTCA+CGG | 0.510639 | 3_4:+48861800 | None:intergenic |
| AATGAGCGTCCTCTGACAAA+AGG | 0.527881 | 3_4:+48858250 | None:intergenic |
| AGGGTTACATTGAGAAATGG+AGG | 0.529746 | 3_4:+48861922 | None:intergenic |
| ATGTGTGCATTCCTCACCCT+TGG | 0.536345 | 3_4:-48858602 | Msa0504420:CDS |
| ATGCATATGGATCGAGTCCA+AGG | 0.537573 | 3_4:+48858585 | None:intergenic |
| AACTGACCTTGACCTAATAT+GGG | 0.540070 | 3_4:+48860674 | None:intergenic |
| GCTGCTAACTATTGGGGTCA+AGG | 0.542202 | 3_4:-48858471 | Msa0504420:CDS |
| TGCATTGACAATCAAACTAT+CGG | 0.542819 | 3_4:-48858567 | Msa0504420:CDS |
| CATATTAGGTCAAGGTCAGT+TGG | 0.544512 | 3_4:-48860672 | Msa0504420:CDS |
| GCTTTAGCTGCTAACTATTG+GGG | 0.545318 | 3_4:-48858477 | Msa0504420:CDS |
| GATAGGTGTAGGGCTGAGAT+TGG | 0.546473 | 3_4:-48858504 | Msa0504420:CDS |
| TCTGATTATCATCTTACAGT+AGG | 0.550926 | 3_4:+48857430 | None:intergenic |
| CTAACTTTAAATGCCAACAA+AGG | 0.553074 | 3_4:+48857274 | None:intergenic |
| TGATCGAATTCCACCCATGA+AGG | 0.554220 | 3_4:+48857484 | None:intergenic |
| GTATGTCAAAGGGATAGTTA+AGG | 0.557102 | 3_4:-48858289 | Msa0504420:CDS |
| AAAGGTTGGGTTCCTTAGGG+AGG | 0.565250 | 3_4:-48858331 | Msa0504420:CDS |
| AAAGAAGAATCAGTCTTCAC+GGG | 0.572186 | 3_4:+48861801 | None:intergenic |
| TCATCATCACCAGATCCAGC+TGG | 0.579658 | 3_4:+48858528 | None:intergenic |
| ATGGATCGAGTCCAAGGGTG+AGG | 0.579690 | 3_4:+48858591 | None:intergenic |
| GAGGCGTTTCTGTTCAAGAT+CGG | 0.581122 | 3_4:+48860637 | None:intergenic |
| TATCTGGCTAGGTGATCCAT+AGG | 0.581390 | 3_4:+48857176 | None:intergenic |
| ACGGTGTTCATAAAGAATGC+AGG | 0.581412 | 3_4:+48857129 | None:intergenic |
| TTATTAAATGGCATCAAACA+AGG | 0.584847 | 3_4:+48857376 | None:intergenic |
| CAAACAAGGAAGATACCAAA+GGG | 0.586833 | 3_4:+48857390 | None:intergenic |
| CTTGTATCCTAACCAAATCA+GGG | 0.587926 | 3_4:+48858397 | None:intergenic |
| ATTCCACCCATGAAGGTCCT+CGG | 0.590322 | 3_4:+48857491 | None:intergenic |
| TTCTGAGTATACCCTCCCTA+AGG | 0.601810 | 3_4:+48858319 | None:intergenic |
| TCTGTGTTCAGTATCGATGA+TGG | 0.602085 | 3_4:+48862249 | None:intergenic |
| AAAGAAAAGTACCGTTGTGG+AGG | 0.606940 | 3_4:+48862157 | None:intergenic |
| CTAGGAGCAAATTTAAAAGA+CGG | 0.608346 | 3_4:+48857110 | None:intergenic |
| ACTTTGAATAAGAGAGACAA+GGG | 0.618834 | 3_4:-48860713 | Msa0504420:CDS |
| AAGGTTGGGTTCCTTAGGGA+GGG | 0.621218 | 3_4:-48858330 | Msa0504420:CDS |
| TATTGAACAGGTAGAAATGG+AGG | 0.621689 | 3_4:+48862393 | None:intergenic |
| CATGCTTCAGAGATTTCAAG+AGG | 0.622637 | 3_4:-48860615 | Msa0504420:CDS |
| GTGATGATGATGATAGGTGT+AGG | 0.623007 | 3_4:-48858515 | Msa0504420:CDS |
| CCTTGACCTAATATGGGAGA+AGG | 0.625074 | 3_4:+48860680 | None:intergenic |
| GTGGAAACTGTCCTGATCCG+AGG | 0.625407 | 3_4:-48857508 | Msa0504420:CDS |
| GAGTGACAAACTATACTAGA+CGG | 0.627131 | 3_4:-48858668 | Msa0504420:CDS |
| CCTTCTCCCATATTAGGTCA+AGG | 0.627679 | 3_4:-48860680 | Msa0504420:CDS |
| TGATGATGATGATAGGTGTA+GGG | 0.628441 | 3_4:-48858514 | Msa0504420:CDS |
| CTTGAAATCTCTGAAGCATG+AGG | 0.633282 | 3_4:+48860618 | None:intergenic |
| AATGGAGGCATCTTAAATGG+AGG | 0.637788 | 3_4:+48862408 | None:intergenic |
| GATCCGAGGACCTTCATGGG+TGG | 0.640610 | 3_4:-48857494 | Msa0504420:CDS |
| ACTCAATTCGAATGGCCGCA+AGG | 0.642027 | 3_4:+48858728 | None:intergenic |
| TCTACGTCACTCAATTCGAA+TGG | 0.643537 | 3_4:+48858720 | None:intergenic |
| TCAAACAAGGAAGATACCAA+AGG | 0.644184 | 3_4:+48857389 | None:intergenic |
| TGCATATGGATCGAGTCCAA+GGG | 0.648894 | 3_4:+48858586 | None:intergenic |
| AGAGAGACAAGGGTCAAACA+TGG | 0.649602 | 3_4:-48860703 | Msa0504420:CDS |
| TGGAGAATCAAGCTTCTCAG+AGG | 0.655320 | 3_4:-48858362 | Msa0504420:CDS |
| ATGGGATCAAACCCTAGATG+AGG | 0.659468 | 3_4:-48862040 | Msa0504420:CDS |
| GCTTCAGAGATTTCAAGAGG+AGG | 0.661326 | 3_4:-48860612 | Msa0504420:CDS |
| AACTTTGAATAAGAGAGACA+AGG | 0.665667 | 3_4:-48860714 | Msa0504420:CDS |
| GGAGAATCAAGCTTCTCAGA+GGG | 0.666533 | 3_4:-48858361 | Msa0504420:CDS |
| TAGGCAAATACAAACTCTTG+GGG | 0.674859 | 3_4:+48857449 | None:intergenic |
| GGAAAAGAAAAGTACCGTTG+TGG | 0.682974 | 3_4:+48862154 | None:intergenic |
| TCGAAAGATTAACATACCAG+AGG | 0.699818 | 3_4:+48857301 | None:intergenic |
| ACTTGTCAAGAATCACCTTG+CGG | 0.733741 | 3_4:-48858743 | Msa0504420:CDS |
| CGTCATATATTCCTCCACAA+CGG | 0.734552 | 3_4:-48862168 | Msa0504420:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTTAATTATTAAA+TGG | + | chr3_4:48862178-48862197 | None:intergenic | 0.0% |
| !! | ATATCAACAATTAAAAAAAA+CGG | + | chr3_4:48860062-48860081 | None:intergenic | 10.0% |
| !!! | AAAAAGACATTTTTTTTTTT+TGG | + | chr3_4:48861755-48861774 | None:intergenic | 10.0% |
| !! | ATGCAACAAAAAAAAATTAA+AGG | + | chr3_4:48857654-48857673 | None:intergenic | 15.0% |
| !! | AATGAAATAATATGATAGTT+TGG | - | chr3_4:48857878-48857897 | Msa0504420:intron | 15.0% |
| !! | ATGAAATAATATGATAGTTT+GGG | - | chr3_4:48857879-48857898 | Msa0504420:intron | 15.0% |
| !! | CATTCAATTAATAATGTATA+TGG | - | chr3_4:48860269-48860288 | Msa0504420:intron | 15.0% |
| !! | TAAATCATAAACTATATATG+TGG | - | chr3_4:48860479-48860498 | Msa0504420:intron | 15.0% |
| !!! | ATTTTTTCTTTCTTTTAATG+TGG | - | chr3_4:48861360-48861379 | Msa0504420:intron | 15.0% |
| !!! | TTTTTTGAATATTATTAGCA+TGG | - | chr3_4:48861521-48861540 | Msa0504420:intron | 15.0% |
| !!! | TTTTTGAATATTATTAGCAT+GGG | - | chr3_4:48861522-48861541 | Msa0504420:intron | 15.0% |
| !! | ATGATAATAATACATCAATT+CGG | + | chr3_4:48861661-48861680 | None:intergenic | 15.0% |
| !!! | GTATTATTATCATTTTGTTT+TGG | - | chr3_4:48861668-48861687 | Msa0504420:intron | 15.0% |
| !! | ATAGAATATAATGTGATTAA+TGG | + | chr3_4:48861908-48861927 | None:intergenic | 15.0% |
| !! | ATTAATCACATTATATTCTA+TGG | - | chr3_4:48861907-48861926 | Msa0504420:intron | 15.0% |
| !! | TTAATCACATTATATTCTAT+GGG | - | chr3_4:48861908-48861927 | Msa0504420:intron | 15.0% |
| !! | GTTAGATATGTATATAAAAA+AGG | - | chr3_4:48862283-48862302 | Msa0504420:five_prime_UTR | 15.0% |
| !! | TTGATTGAATAGAAATGAAA+TGG | + | chr3_4:48857438-48857457 | None:intergenic | 20.0% |
| !! | TCAAATAAAATCAAACACAT+GGG | + | chr3_4:48857695-48857714 | None:intergenic | 20.0% |
| !! | ATCAAATAAAATCAAACACA+TGG | + | chr3_4:48857696-48857715 | None:intergenic | 20.0% |
| !! | TTGTTTAATAGTGTAAATGT+TGG | - | chr3_4:48858105-48858124 | Msa0504420:intron | 20.0% |
| !!! | AACATAACTTTTTTTTGAGA+AGG | + | chr3_4:48858750-48858769 | None:intergenic | 20.0% |
| !! | ACAAATTATTATCATCACAA+AGG | + | chr3_4:48859142-48859161 | None:intergenic | 20.0% |
| !!! | CTTTGGAAAAGAAAAAAAAA+AGG | + | chr3_4:48859501-48859520 | None:intergenic | 20.0% |
| !! | AACAAATACTTGAAACAAAA+TGG | + | chr3_4:48859806-48859825 | None:intergenic | 20.0% |
| !!! | GAAAAAAAGGGTATAAAATA+TGG | + | chr3_4:48859939-48859958 | None:intergenic | 20.0% |
| !! | ATTATGTTAAACCATTACTA+AGG | + | chr3_4:48860407-48860426 | None:intergenic | 20.0% |
| !! | TACACTAATGATCAATTATA+TGG | - | chr3_4:48860532-48860551 | Msa0504420:intron | 20.0% |
| !! | GTATTAATAAAATGGAGTAT+GGG | + | chr3_4:48860676-48860695 | None:intergenic | 20.0% |
| !! | TGTATTAATAAAATGGAGTA+TGG | + | chr3_4:48860677-48860696 | None:intergenic | 20.0% |
| !! | AGAAGAAACAAACAATAAAT+GGG | + | chr3_4:48861483-48861502 | None:intergenic | 20.0% |
| !! | TAACAATAATTCACCTTAAA+AGG | + | chr3_4:48861713-48861732 | None:intergenic | 20.0% |
| !!! | ACATTTTTTTTTTTTGGTTG+GGG | + | chr3_4:48861749-48861768 | None:intergenic | 20.0% |
| !!! | GACATTTTTTTTTTTTGGTT+GGG | + | chr3_4:48861750-48861769 | None:intergenic | 20.0% |
| !!! | AGACATTTTTTTTTTTTGGT+TGG | + | chr3_4:48861751-48861770 | None:intergenic | 20.0% |
| ! | GTGAAAAAAACAAAAACCAA+GGG | - | chr3_4:48857185-48857204 | Msa0504420:three_prime_UTR | 25.0% |
| ! | GAAAATAAGCATTTGTTTAC+CGG | - | chr3_4:48857223-48857242 | Msa0504420:three_prime_UTR | 25.0% |
| ! | TACAAAAATGGCAGAAAAAT+TGG | - | chr3_4:48857337-48857356 | Msa0504420:three_prime_UTR | 25.0% |
| ! | TGAATAGAAATGAAATGGAA+TGG | + | chr3_4:48857433-48857452 | None:intergenic | 25.0% |
| ! | ATTAAAGGAGAGTGAAATTA+GGG | + | chr3_4:48857639-48857658 | None:intergenic | 25.0% |
| ! | AATTAAAGGAGAGTGAAATT+AGG | + | chr3_4:48857640-48857659 | None:intergenic | 25.0% |
| !!! | AAGTTGGTTTTCGAATTAAT+TGG | - | chr3_4:48857829-48857848 | Msa0504420:intron | 25.0% |
| !!! | AGTTGGTTTTCGAATTAATT+GGG | - | chr3_4:48857830-48857849 | Msa0504420:intron | 25.0% |
| !! | ATAATATGATAGTTTGGGTT+TGG | - | chr3_4:48857884-48857903 | Msa0504420:intron | 25.0% |
| ! | TAAATGAAATCCTCTTGATT+TGG | + | chr3_4:48858003-48858022 | None:intergenic | 25.0% |
| !!! | TGTTCTGAGAATTTTTTTAG+AGG | - | chr3_4:48858163-48858182 | Msa0504420:intron | 25.0% |
| !!! | GAATTTTTTTAGAGGTGTAT+TGG | - | chr3_4:48858171-48858190 | Msa0504420:intron | 25.0% |
| ! | TGAACTTAAAATTACAGAAG+AGG | + | chr3_4:48858300-48858319 | None:intergenic | 25.0% |
| !!! | TACTTTGTTTTATGTGGAAA+AGG | - | chr3_4:48858580-48858599 | Msa0504420:CDS | 25.0% |
| !! | TTGTGTATTTAAGGTTTATG+TGG | - | chr3_4:48858626-48858645 | Msa0504420:CDS | 25.0% |
| !! | ATGTAATATTTTTCGTGTGA+TGG | - | chr3_4:48858965-48858984 | Msa0504420:intron | 25.0% |
| !! | TGTAATATTTTTCGTGTGAT+GGG | - | chr3_4:48858966-48858985 | Msa0504420:intron | 25.0% |
| ! | AAGACATCATAAAATGCAAA+TGG | + | chr3_4:48859006-48859025 | None:intergenic | 25.0% |
| ! | GTGAGAAATATAGGAAAAAA+TGG | - | chr3_4:48859212-48859231 | Msa0504420:intron | 25.0% |
| ! | AGAAAAAAAAAAGGAACAAG+TGG | + | chr3_4:48859492-48859511 | None:intergenic | 25.0% |
| ! | ATATTCTTTCATTTCGTATG+GGG | + | chr3_4:48859660-48859679 | None:intergenic | 25.0% |
| ! | GATATTCTTTCATTTCGTAT+GGG | + | chr3_4:48859661-48859680 | None:intergenic | 25.0% |
| ! | TGATATTCTTTCATTTCGTA+TGG | + | chr3_4:48859662-48859681 | None:intergenic | 25.0% |
| ! | TATCCAGAGTATATTCATTA+TGG | - | chr3_4:48859906-48859925 | Msa0504420:intron | 25.0% |
| !!! | ACCAAGTTTGTTGAAAAAAA+GGG | + | chr3_4:48859951-48859970 | None:intergenic | 25.0% |
| ! | CAATTATTATATACATCCTC+CGG | + | chr3_4:48860365-48860384 | None:intergenic | 25.0% |
| ! | GGAGGATGTATATAATAATT+GGG | - | chr3_4:48860364-48860383 | Msa0504420:intron | 25.0% |
| ! | GATGTATATAATAATTGGGT+TGG | - | chr3_4:48860368-48860387 | Msa0504420:intron | 25.0% |
| ! | CCTTATCTTCATTATACATA+TGG | + | chr3_4:48860506-48860525 | None:intergenic | 25.0% |
| ! | CCATATGTATAATGAAGATA+AGG | - | chr3_4:48860503-48860522 | Msa0504420:intron | 25.0% |
| ! | TAATGATCAATTATATGGTG+AGG | - | chr3_4:48860537-48860556 | Msa0504420:intron | 25.0% |
| ! | GTACAACTACAAAATATTCT+TGG | + | chr3_4:48860619-48860638 | None:intergenic | 25.0% |
| ! | AGTGAATAAAAGCAAACAAT+AGG | + | chr3_4:48860651-48860670 | None:intergenic | 25.0% |
| ! | TAAAAGAGATTAGAAACCTA+TGG | + | chr3_4:48861326-48861345 | None:intergenic | 25.0% |
| ! | GAGAAGAAACAAACAATAAA+TGG | + | chr3_4:48861484-48861503 | None:intergenic | 25.0% |
| !! | ACTTCTAACTTTGTTGATAA+TGG | - | chr3_4:48861630-48861649 | Msa0504420:intron | 25.0% |
| !!! | CTTCTAACTTTGTTGATAAT+GGG | - | chr3_4:48861631-48861650 | Msa0504420:intron | 25.0% |
| !!! | CATTTTTTTTTTTTGGTTGG+GGG | + | chr3_4:48861748-48861767 | None:intergenic | 25.0% |
| ! | TAGTTGCTTCTGAATTAATT+TGG | - | chr3_4:48861798-48861817 | Msa0504420:CDS | 25.0% |
| ! | AATGTGATTAATGGTTACTA+TGG | + | chr3_4:48861899-48861918 | None:intergenic | 25.0% |
| ! | TCAATAGAAATAGTAGATAG+AGG | + | chr3_4:48861957-48861976 | None:intergenic | 25.0% |
| ! | TTATTAAATGGCATCAAACA+AGG | + | chr3_4:48862166-48862185 | None:intergenic | 25.0% |
| ! | TAACTTTAAATGCCAACAAA+GGG | + | chr3_4:48862267-48862286 | None:intergenic | 25.0% |
| ! | ATAGGACTTCAAATCAAAAT+AGG | + | chr3_4:48862348-48862367 | None:intergenic | 25.0% |
| !!! | TATTTTGATTTGAAGTCCTA+TGG | - | chr3_4:48862347-48862366 | Msa0504420:five_prime_UTR | 25.0% |
| ATGTATTGAACAGGTAGAAA+TGG | + | chr3_4:48857152-48857171 | None:intergenic | 30.0% | |
| CAGATATCTATGTATTGAAC+AGG | + | chr3_4:48857161-48857180 | None:intergenic | 30.0% | |
| CGTGAAAAAAACAAAAACCA+AGG | - | chr3_4:48857184-48857203 | Msa0504420:three_prime_UTR | 30.0% | |
| CAAAGACGAGTTTACAAAAA+TGG | - | chr3_4:48857325-48857344 | Msa0504420:three_prime_UTR | 30.0% | |
| ATGGAATGAAATTGGAAAGA+TGG | + | chr3_4:48857409-48857428 | None:intergenic | 30.0% | |
| AGAAATGAAATGGAATGGAA+TGG | + | chr3_4:48857428-48857447 | None:intergenic | 30.0% | |
| AACCTGTTCTTCTTCAATTT+AGG | - | chr3_4:48857461-48857480 | Msa0504420:CDS | 30.0% | |
| GTAAATATTGACCTCATCTA+GGG | + | chr3_4:48857513-48857532 | None:intergenic | 30.0% | |
| TGTAAATATTGACCTCATCT+AGG | + | chr3_4:48857514-48857533 | None:intergenic | 30.0% | |
| AATAGCTTGGAATGAACATT+TGG | + | chr3_4:48857548-48857567 | None:intergenic | 30.0% | |
| AATCGTACAGTAAAATAGCT+TGG | + | chr3_4:48857561-48857580 | None:intergenic | 30.0% | |
| CATATTGAACTTGGTATCAA+AGG | - | chr3_4:48857590-48857609 | Msa0504420:intron | 30.0% | |
| ATTAGGGTTACATTGAGAAA+TGG | + | chr3_4:48857623-48857642 | None:intergenic | 30.0% | |
| AAAAGAAGAATCAGTCTTCA+CGG | + | chr3_4:48857742-48857761 | None:intergenic | 30.0% | |
| !! | TGAAGACTGATTCTTCTTTT+TGG | - | chr3_4:48857742-48857761 | Msa0504420:intron | 30.0% |
| ! | GATTCTTCTTTTTGGACTTT+AGG | - | chr3_4:48857750-48857769 | Msa0504420:intron | 30.0% |
| !!! | TGACTGTTTTTGTGTTAAGT+TGG | - | chr3_4:48857813-48857832 | Msa0504420:intron | 30.0% |
| !!! | GTTGGTTTTCGAATTAATTG+GGG | - | chr3_4:48857831-48857850 | Msa0504420:intron | 30.0% |
| ! | TTTGGTTAAGTTTAGTTCGT+TGG | - | chr3_4:48857902-48857921 | Msa0504420:intron | 30.0% |
| TTGATTACGAGAAAGTTGTT+TGG | - | chr3_4:48857943-48857962 | Msa0504420:intron | 30.0% | |
| TGATTACGAGAAAGTTGTTT+GGG | - | chr3_4:48857944-48857963 | Msa0504420:intron | 30.0% | |
| GTTCTTAAAACCAAATCAAG+AGG | - | chr3_4:48857990-48858009 | Msa0504420:intron | 30.0% | |
| TGAAATAAATCAGCTACTTG+AGG | - | chr3_4:48858023-48858042 | Msa0504420:intron | 30.0% | |
| !! | TTTTTAGAGGTGTATTGGAA+TGG | - | chr3_4:48858176-48858195 | Msa0504420:intron | 30.0% |
| AACTTTAATTGATATGCCTG+TGG | - | chr3_4:48858321-48858340 | Msa0504420:CDS | 30.0% | |
| AAAATCGATTATACCAAGCA+AGG | + | chr3_4:48858519-48858538 | None:intergenic | 30.0% | |
| !!! | CTCTGTTACTTTGTTTTATG+TGG | - | chr3_4:48858574-48858593 | Msa0504420:CDS | 30.0% |
| ! | TTTTATGTGGAAAAGGAAAC+AGG | - | chr3_4:48858587-48858606 | Msa0504420:CDS | 30.0% |
| ! | TAGGAAGCTTTGTGTATTTA+AGG | - | chr3_4:48858617-48858636 | Msa0504420:CDS | 30.0% |
| GTGTACAAAGAGTAGATAAA+AGG | + | chr3_4:48858692-48858711 | None:intergenic | 30.0% | |
| TAACAACTACACTAAGTACA+AGG | + | chr3_4:48858714-48858733 | None:intergenic | 30.0% | |
| AACTTTGAATAAGAGAGACA+AGG | - | chr3_4:48858825-48858844 | Msa0504420:intron | 30.0% | |
| ACTTTGAATAAGAGAGACAA+GGG | - | chr3_4:48858826-48858845 | Msa0504420:intron | 30.0% | |
| TTATGAGTGGTGAGAAATAT+AGG | - | chr3_4:48859203-48859222 | Msa0504420:intron | 30.0% | |
| !! | TTGATAGAGTATTGCTTTAG+AGG | - | chr3_4:48859253-48859272 | Msa0504420:intron | 30.0% |
| ATACAAAATACCCCTAATCT+GGG | + | chr3_4:48859413-48859432 | None:intergenic | 30.0% | |
| AATACAAAATACCCCTAATC+TGG | + | chr3_4:48859414-48859433 | None:intergenic | 30.0% | |
| !!! | AGAATAGAGAGTTTTGGAAA+GGG | + | chr3_4:48859467-48859486 | None:intergenic | 30.0% |
| !!! | AAGAATAGAGAGTTTTGGAA+AGG | + | chr3_4:48859468-48859487 | None:intergenic | 30.0% |
| ! | TAAGACTTTGTTTGCAAGTT+TGG | + | chr3_4:48859538-48859557 | None:intergenic | 30.0% |
| AACTTGCAAACAAAGTCTTA+AGG | - | chr3_4:48859538-48859557 | Msa0504420:intron | 30.0% | |
| ACTTGCAAACAAAGTCTTAA+GGG | - | chr3_4:48859539-48859558 | Msa0504420:intron | 30.0% | |
| !! | ATTATTTTTCATCAGCGTGT+AGG | + | chr3_4:48859599-48859618 | None:intergenic | 30.0% |
| ! | CATTTTGTTAACCACATGTA+TGG | + | chr3_4:48859708-48859727 | None:intergenic | 30.0% |
| TGCTAAAGCTTATGAAAGAA+TGG | + | chr3_4:48859779-48859798 | None:intergenic | 30.0% | |
| CATCCATAATGAATATACTC+TGG | + | chr3_4:48859912-48859931 | None:intergenic | 30.0% | |
| !!! | ACCCTTTTTTTCAACAAACT+TGG | - | chr3_4:48859947-48859966 | Msa0504420:intron | 30.0% |
| !! | GACCAAGTTTGTTGAAAAAA+AGG | + | chr3_4:48859952-48859971 | None:intergenic | 30.0% |
| ! | CTTTAGATTTTAAACCGTCA+AGG | - | chr3_4:48860018-48860037 | Msa0504420:intron | 30.0% |
| TTGTATAATATTGACACGAG+AGG | - | chr3_4:48860102-48860121 | Msa0504420:intron | 30.0% | |
| TGTATAATATTGACACGAGA+GGG | - | chr3_4:48860103-48860122 | Msa0504420:intron | 30.0% | |
| ! | GTTTTGCTTATAATAGTGAC+CGG | - | chr3_4:48860343-48860362 | Msa0504420:intron | 30.0% |
| CGGAGGATGTATATAATAAT+TGG | - | chr3_4:48860363-48860382 | Msa0504420:intron | 30.0% | |
| GAATAAAAGCAAACAATAGG+CGG | + | chr3_4:48860648-48860667 | None:intergenic | 30.0% | |
| TTCATTCAGTATACTAGCTA+TGG | - | chr3_4:48860767-48860786 | Msa0504420:intron | 30.0% | |
| !!! | ACGGAAAAGTTTTGTTTCAA+GGG | - | chr3_4:48860890-48860909 | Msa0504420:intron | 30.0% |
| AGTTTGATTGTCAATGCATA+TGG | + | chr3_4:48860970-48860989 | None:intergenic | 30.0% | |
| ! | TGCATTGACAATCAAACTAT+CGG | - | chr3_4:48860972-48860991 | Msa0504420:intron | 30.0% |
| ! | TGATGTATCACAAGTTTTCA+AGG | - | chr3_4:48861115-48861134 | Msa0504420:intron | 30.0% |
| !! | AGAAAGTATTCGTATGTCAA+AGG | - | chr3_4:48861239-48861258 | Msa0504420:intron | 30.0% |
| !! | GAAAGTATTCGTATGTCAAA+GGG | - | chr3_4:48861240-48861259 | Msa0504420:intron | 30.0% |
| !!! | TATTTTTAGCCTTTTGTCAG+AGG | - | chr3_4:48861280-48861299 | Msa0504420:intron | 30.0% |
| ! | TTTTAATGTGGTGATTACTG+TGG | - | chr3_4:48861372-48861391 | Msa0504420:intron | 30.0% |
| TTTAATGTGGTGATTACTGT+GGG | - | chr3_4:48861373-48861392 | Msa0504420:intron | 30.0% | |
| CAAAAAAAGTTGACAACTGT+AGG | + | chr3_4:48861508-48861527 | None:intergenic | 30.0% | |
| GAAATTATCTGTCAAGTTCA+AGG | + | chr3_4:48861586-48861605 | None:intergenic | 30.0% | |
| TAAAAGGAGAATAATTCCAG+TGG | + | chr3_4:48861697-48861716 | None:intergenic | 30.0% | |
| ! | CTGGAATTATTCTCCTTTTA+AGG | - | chr3_4:48861697-48861716 | Msa0504420:intron | 30.0% |
| ! | TTTTCACAAGCTCAATTTAG+TGG | - | chr3_4:48862012-48862031 | Msa0504420:CDS | 30.0% |
| TCTGATTATCATCTTACAGT+AGG | + | chr3_4:48862112-48862131 | None:intergenic | 30.0% | |
| ! | CTCTAATAACAACAGACTTT+TGG | - | chr3_4:48862212-48862231 | Msa0504420:exon | 30.0% |
| CTAACTTTAAATGCCAACAA+AGG | + | chr3_4:48862268-48862287 | None:intergenic | 30.0% | |
| !! | TGTTTCGTACAAGTTTTATC+TGG | + | chr3_4:48862382-48862401 | None:intergenic | 30.0% |
| AACTTGTACGAAACATTGTT+TGG | - | chr3_4:48862387-48862406 | Msa0504420:five_prime_UTR | 30.0% | |
| !! | AGAAATGGAGGCATCTTAAA+TGG | + | chr3_4:48857137-48857156 | None:intergenic | 35.0% |
| TATTGAACAGGTAGAAATGG+AGG | + | chr3_4:48857149-48857168 | None:intergenic | 35.0% | |
| CAACTTGTAATATCAACCCT+TGG | + | chr3_4:48857204-48857223 | None:intergenic | 35.0% | |
| ! | AGGAATATATGACGCTTTTC+TGG | + | chr3_4:48857365-48857384 | None:intergenic | 35.0% |
| GGAATGGAATGGAATGAAAT+TGG | + | chr3_4:48857417-48857436 | None:intergenic | 35.0% | |
| GACCTAAATTGAAGAAGAAC+AGG | + | chr3_4:48857466-48857485 | None:intergenic | 35.0% | |
| !! | TAGGTCAAAAAGTGTTCGAA+TGG | - | chr3_4:48857480-48857499 | Msa0504420:CDS | 35.0% |
| !! | AGGTCAAAAAGTGTTCGAAT+GGG | - | chr3_4:48857481-48857500 | Msa0504420:CDS | 35.0% |
| GATACCAAGTTCAATATGCT+TGG | + | chr3_4:48857588-48857607 | None:intergenic | 35.0% | |
| AAAGAAGAATCAGTCTTCAC+GGG | + | chr3_4:48857741-48857760 | None:intergenic | 35.0% | |
| GATTACGAGAAAGTTGTTTG+GGG | - | chr3_4:48857945-48857964 | Msa0504420:intron | 35.0% | |
| ATTACGAGAAAGTTGTTTGG+GGG | - | chr3_4:48857946-48857965 | Msa0504420:intron | 35.0% | |
| GACAAAGATTCTATCTTGGA+AGG | - | chr3_4:48857968-48857987 | Msa0504420:intron | 35.0% | |
| GTAAGCGATAAATAGTTGGT+GGG | - | chr3_4:48858069-48858088 | Msa0504420:intron | 35.0% | |
| ! | TAAGCGATAAATAGTTGGTG+GGG | - | chr3_4:48858070-48858089 | Msa0504420:intron | 35.0% |
| ATCAGATCGAAGATCAATGA+TGG | - | chr3_4:48858212-48858231 | Msa0504420:intron | 35.0% | |
| AACTGACCTTGACCTAATAT+GGG | + | chr3_4:48858868-48858887 | None:intergenic | 35.0% | |
| !! | ATTTTTCGTGTGATGGGATT+AGG | - | chr3_4:48858972-48858991 | Msa0504420:intron | 35.0% |
| CAGAATCAAGTTTCAGACAA+AGG | + | chr3_4:48859049-48859068 | None:intergenic | 35.0% | |
| TGGAACTCAAGATGATATAG+CGG | + | chr3_4:48859107-48859126 | None:intergenic | 35.0% | |
| TTGTGTACTTAAGCTCTGTT+TGG | - | chr3_4:48859158-48859177 | Msa0504420:intron | 35.0% | |
| TACAAAATACCCCTAATCTG+GGG | + | chr3_4:48859412-48859431 | None:intergenic | 35.0% | |
| ! | GTGGAAAGAATAGAGAGTTT+TGG | + | chr3_4:48859473-48859492 | None:intergenic | 35.0% |
| ! | ACTTTGTTTGCAAGTTTGGA+GGG | + | chr3_4:48859534-48859553 | None:intergenic | 35.0% |
| AAACAAAGTCTTAAGGGCTA+AGG | - | chr3_4:48859545-48859564 | Msa0504420:intron | 35.0% | |
| TGAATCGATAACCATACATG+TGG | - | chr3_4:48859694-48859713 | Msa0504420:intron | 35.0% | |
| TTCATTTGTAACAGCCTTGA+CGG | + | chr3_4:48860035-48860054 | None:intergenic | 35.0% | |
| GTATAATATTGACACGAGAG+GGG | - | chr3_4:48860104-48860123 | Msa0504420:intron | 35.0% | |
| TATAATATTGACACGAGAGG+GGG | - | chr3_4:48860105-48860124 | Msa0504420:intron | 35.0% | |
| ! | ATCTGATGATTCAATGGACT+TGG | - | chr3_4:48860128-48860147 | Msa0504420:intron | 35.0% |
| AGGAACTTAAATTATCCGCA+AGG | + | chr3_4:48860197-48860216 | None:intergenic | 35.0% | |
| TGCTTATAATAGTGACCAGA+GGG | + | chr3_4:48860230-48860249 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTGACCAG+AGG | + | chr3_4:48860231-48860250 | None:intergenic | 35.0% | |
| !! | ATTGGGTTGGTTGTATACAA+TGG | - | chr3_4:48860381-48860400 | Msa0504420:intron | 35.0% |
| ! | GTATACAATGGCCTTAGTAA+TGG | - | chr3_4:48860393-48860412 | Msa0504420:intron | 35.0% |
| ! | AGTTGGGCAGTATTTTGTAT+TGG | + | chr3_4:48860593-48860612 | None:intergenic | 35.0% |
| GTAGTTATCCCTTCTAAACA+GGG | - | chr3_4:48860714-48860733 | Msa0504420:CDS | 35.0% | |
| TCTTTCTACCCTGTTTAGAA+GGG | + | chr3_4:48860725-48860744 | None:intergenic | 35.0% | |
| TTCTTTCTACCCTGTTTAGA+AGG | + | chr3_4:48860726-48860745 | None:intergenic | 35.0% | |
| GGTAGAAAGAAACACATGAT+TGG | - | chr3_4:48860735-48860754 | Msa0504420:CDS | 35.0% | |
| ! | GAAACACATGATTGGTTGAT+TGG | - | chr3_4:48860743-48860762 | Msa0504420:intron | 35.0% |
| GAGTGACAAACTATACTAGA+CGG | - | chr3_4:48860871-48860890 | Msa0504420:intron | 35.0% | |
| !!! | GACGGAAAAGTTTTGTTTCA+AGG | - | chr3_4:48860889-48860908 | Msa0504420:intron | 35.0% |
| !!! | AAGTTTTGTTTCAAGGGAAC+AGG | - | chr3_4:48860896-48860915 | Msa0504420:intron | 35.0% |
| TTCATATCAATTTCTCCAGC+TGG | - | chr3_4:48860996-48861015 | Msa0504420:intron | 35.0% | |
| ! | TGATGATGATGATAGGTGTA+GGG | - | chr3_4:48861025-48861044 | Msa0504420:intron | 35.0% |
| ATGCTTTAGCTGCTAACTAT+TGG | - | chr3_4:48861060-48861079 | Msa0504420:intron | 35.0% | |
| TGCTTTAGCTGCTAACTATT+GGG | - | chr3_4:48861061-48861080 | Msa0504420:intron | 35.0% | |
| TACATCAACTTTCACTGCTT+GGG | + | chr3_4:48861102-48861121 | None:intergenic | 35.0% | |
| ATACATCAACTTTCACTGCT+TGG | + | chr3_4:48861103-48861122 | None:intergenic | 35.0% | |
| TTTCAAGGATATCCCTGATT+TGG | - | chr3_4:48861130-48861149 | Msa0504420:intron | 35.0% | |
| CTTGTATCCTAACCAAATCA+GGG | + | chr3_4:48861145-48861164 | None:intergenic | 35.0% | |
| !!! | GATACAAGCTTTTGTTTCTG+TGG | - | chr3_4:48861157-48861176 | Msa0504420:intron | 35.0% |
| GTATGTCAAAGGGATAGTTA+AGG | - | chr3_4:48861250-48861269 | Msa0504420:intron | 35.0% | |
| TCATTCTCTACAGTAACCAT+AGG | - | chr3_4:48861307-48861326 | Msa0504420:intron | 35.0% | |
| !!! | TTTTTTTTTTGGTTGGGGGA+GGG | + | chr3_4:48861744-48861763 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTTTGGTTGGGGG+AGG | + | chr3_4:48861745-48861764 | None:intergenic | 35.0% |
| ! | TGCTTCTGAATTAATTTGGC+TGG | - | chr3_4:48861802-48861821 | Msa0504420:CDS | 35.0% |
| ACCATTGAATATGAATCCAG+CGG | + | chr3_4:48861829-48861848 | None:intergenic | 35.0% | |
| CTTGTGAAAAATCAAAACCC+GGG | + | chr3_4:48862002-48862021 | None:intergenic | 35.0% | |
| GCTTGTGAAAAATCAAAACC+CGG | + | chr3_4:48862003-48862022 | None:intergenic | 35.0% | |
| TAGGCAAATACAAACTCTTG+GGG | + | chr3_4:48862093-48862112 | None:intergenic | 35.0% | |
| GTAGGCAAATACAAACTCTT+GGG | + | chr3_4:48862094-48862113 | None:intergenic | 35.0% | |
| AGTAGGCAAATACAAACTCT+TGG | + | chr3_4:48862095-48862114 | None:intergenic | 35.0% | |
| CAAACAAGGAAGATACCAAA+GGG | + | chr3_4:48862152-48862171 | None:intergenic | 35.0% | |
| TCAAACAAGGAAGATACCAA+AGG | + | chr3_4:48862153-48862172 | None:intergenic | 35.0% | |
| TCGAAAGATTAACATACCAG+AGG | + | chr3_4:48862241-48862260 | None:intergenic | 35.0% | |
| !! | AATGGAGGCATCTTAAATGG+AGG | + | chr3_4:48857134-48857153 | None:intergenic | 40.0% |
| !! | TCTGTGTTCAGTATCGATGA+TGG | + | chr3_4:48857293-48857312 | None:intergenic | 40.0% |
| CGTCATATATTCCTCCACAA+CGG | - | chr3_4:48857371-48857390 | Msa0504420:three_prime_UTR | 40.0% | |
| !! | AAAGAAAAGTACCGTTGTGG+AGG | + | chr3_4:48857385-48857404 | None:intergenic | 40.0% |
| !! | GGAAAAGAAAAGTACCGTTG+TGG | + | chr3_4:48857388-48857407 | None:intergenic | 40.0% |
| AGCTTGGAATGAACATTTGG+CGG | + | chr3_4:48857545-48857564 | None:intergenic | 40.0% | |
| CAGTCCAAGCATATTGAACT+TGG | - | chr3_4:48857581-48857600 | Msa0504420:intron | 40.0% | |
| AGGGTTACATTGAGAAATGG+AGG | + | chr3_4:48857620-48857639 | None:intergenic | 40.0% | |
| GGTGGTAAGCGATAAATAGT+TGG | - | chr3_4:48858065-48858084 | Msa0504420:intron | 40.0% | |
| GGTAAGCGATAAATAGTTGG+TGG | - | chr3_4:48858068-48858087 | Msa0504420:intron | 40.0% | |
| !! | GATAAATAGTTGGTGGGGAA+CGG | - | chr3_4:48858075-48858094 | Msa0504420:intron | 40.0% |
| AGGTGTATTGGAATGGTTGT+AGG | - | chr3_4:48858183-48858202 | Msa0504420:intron | 40.0% | |
| GGTGCTAAGCTTTCTTTGTT+TGG | - | chr3_4:48858233-48858252 | Msa0504420:intron | 40.0% | |
| AACCAGCCACAATGATACAA+AGG | + | chr3_4:48858351-48858370 | None:intergenic | 40.0% | |
| ! | TTGTATCATTGTGGCTGGTT+TGG | - | chr3_4:48858351-48858370 | Msa0504420:CDS | 40.0% |
| GAACTTTGCAGCATATGAAC+AGG | - | chr3_4:48858450-48858469 | Msa0504420:CDS | 40.0% | |
| ! | GCAGCATATGAACAGGTTTT+TGG | - | chr3_4:48858457-48858476 | Msa0504420:CDS | 40.0% |
| !!! | GAACAGGTTTTTGGTGATTG+AGG | - | chr3_4:48858466-48858485 | Msa0504420:CDS | 40.0% |
| TATGTGGAAAAGGAAACAGG+TGG | - | chr3_4:48858590-48858609 | Msa0504420:CDS | 40.0% | |
| AAAGGAAACAGGTGGTGATT+AGG | - | chr3_4:48858598-48858617 | Msa0504420:CDS | 40.0% | |
| ! | TTTTCGAACTTGAACTGCAG+AGG | - | chr3_4:48858786-48858805 | Msa0504420:intron | 40.0% |
| CAACTGACCTTGACCTAATA+TGG | + | chr3_4:48858869-48858888 | None:intergenic | 40.0% | |
| CATATTAGGTCAAGGTCAGT+TGG | - | chr3_4:48858867-48858886 | Msa0504420:intron | 40.0% | |
| !! | CTTGAAATCTCTGAAGCATG+AGG | + | chr3_4:48858924-48858943 | None:intergenic | 40.0% |
| CATGCTTCAGAGATTTCAAG+AGG | - | chr3_4:48858924-48858943 | Msa0504420:intron | 40.0% | |
| AGAGATTTCAAGAGGAGGTA+AGG | - | chr3_4:48858932-48858951 | Msa0504420:intron | 40.0% | |
| ! | GATATAGCGGGAAATGAACA+GGG | + | chr3_4:48859094-48859113 | None:intergenic | 40.0% |
| ! | TGATATAGCGGGAAATGAAC+AGG | + | chr3_4:48859095-48859114 | None:intergenic | 40.0% |
| GGAACTCAAGATGATATAGC+GGG | + | chr3_4:48859106-48859125 | None:intergenic | 40.0% | |
| CACAAAGGAATGATCGTAAC+TGG | + | chr3_4:48859127-48859146 | None:intergenic | 40.0% | |
| !! | AGGAGGATTTTAGAGGGTTT+CGG | + | chr3_4:48859369-48859388 | None:intergenic | 40.0% |
| ! | TACTGGAGGAGGATTTTAGA+GGG | + | chr3_4:48859375-48859394 | None:intergenic | 40.0% |
| ! | ATACTGGAGGAGGATTTTAG+AGG | + | chr3_4:48859376-48859395 | None:intergenic | 40.0% |
| CTCAAAACTTATACTGGAGG+AGG | + | chr3_4:48859386-48859405 | None:intergenic | 40.0% | |
| GAGCTCAAAACTTATACTGG+AGG | + | chr3_4:48859389-48859408 | None:intergenic | 40.0% | |
| ACAAAATACCCCTAATCTGG+GGG | + | chr3_4:48859411-48859430 | None:intergenic | 40.0% | |
| !!! | AGAGAGTTTTGGAAAGGGAA+AGG | + | chr3_4:48859462-48859481 | None:intergenic | 40.0% |
| ! | CTTTGTTTGCAAGTTTGGAG+GGG | + | chr3_4:48859533-48859552 | None:intergenic | 40.0% |
| ! | GACTTTGTTTGCAAGTTTGG+AGG | + | chr3_4:48859535-48859554 | None:intergenic | 40.0% |
| TGAGGTGGCATATTGTGATT+AGG | + | chr3_4:48859736-48859755 | None:intergenic | 40.0% | |
| AGACAGTGAAGAAAATGAGG+TGG | + | chr3_4:48859751-48859770 | None:intergenic | 40.0% | |
| GCAAGACAGTGAAGAAAATG+AGG | + | chr3_4:48859754-48859773 | None:intergenic | 40.0% | |
| ACAAACTTGGTCAAGACACA+AGG | - | chr3_4:48859960-48859979 | Msa0504420:intron | 40.0% | |
| !! | TGGTTGATTCTAGTTCCTTG+CGG | - | chr3_4:48860179-48860198 | Msa0504420:intron | 40.0% |
| TTGCTTATAATAGTGACCGG+AGG | - | chr3_4:48860346-48860365 | Msa0504420:intron | 40.0% | |
| CAATTATATGGTGAGGTGAC+AGG | - | chr3_4:48860544-48860563 | Msa0504420:intron | 40.0% | |
| GGTAGTTATCCCTTCTAAAC+AGG | - | chr3_4:48860713-48860732 | Msa0504420:CDS | 40.0% | |
| ACTTGTCAAGAATCACCTTG+CGG | - | chr3_4:48860796-48860815 | Msa0504420:intron | 40.0% | |
| TCTACGTCACTCAATTCGAA+TGG | + | chr3_4:48860822-48860841 | None:intergenic | 40.0% | |
| GACGATTTCATGTTAGTAGC+AGG | - | chr3_4:48860840-48860859 | Msa0504420:intron | 40.0% | |
| ! | GATCTGGTGATGATGATGAT+AGG | - | chr3_4:48861018-48861037 | Msa0504420:intron | 40.0% |
| ! | GTGATGATGATGATAGGTGT+AGG | - | chr3_4:48861024-48861043 | Msa0504420:intron | 40.0% |
| GCTTTAGCTGCTAACTATTG+GGG | - | chr3_4:48861062-48861081 | Msa0504420:intron | 40.0% | |
| !! | AGGATATCCCTGATTTGGTT+AGG | - | chr3_4:48861135-48861154 | Msa0504420:intron | 40.0% |
| GCTTGTATCCTAACCAAATC+AGG | + | chr3_4:48861146-48861165 | None:intergenic | 40.0% | |
| ! | AGACACGGTTGATGTTAAGA+TGG | - | chr3_4:48861397-48861416 | Msa0504420:intron | 40.0% |
| TACCTACACTTTGTGCAGTT+TGG | - | chr3_4:48861443-48861462 | Msa0504420:intron | 40.0% | |
| TTCACATGAGCATGGCAAAT+TGG | + | chr3_4:48861557-48861576 | None:intergenic | 40.0% | |
| AATTTGCCATGCTCATGTGA+AGG | - | chr3_4:48861556-48861575 | Msa0504420:intron | 40.0% | |
| !!! | CATTTTGTTTTGGACACCAC+TGG | - | chr3_4:48861678-48861697 | Msa0504420:intron | 40.0% |
| ACCGCTGGATTCATATTCAA+TGG | - | chr3_4:48861825-48861844 | Msa0504420:intron | 40.0% | |
| AATGAGCTGTGTAATCCCTT+TGG | - | chr3_4:48862134-48862153 | Msa0504420:intron | 40.0% | |
| !! | CGTACAAGTTTTATCTGGCT+AGG | + | chr3_4:48862377-48862396 | None:intergenic | 40.0% |
| ACGGTGTTCATAAAGAATGC+AGG | + | chr3_4:48862413-48862432 | None:intergenic | 40.0% | |
| !! | AGAAGCGCGTAGTGATTTTC+CGG | + | chr3_4:48857245-48857264 | None:intergenic | 45.0% |
| ATGGGATCAAACCCTAGATG+AGG | - | chr3_4:48857499-48857518 | Msa0504420:CDS | 45.0% | |
| GGGGGACAAAGATTCTATCT+TGG | - | chr3_4:48857964-48857983 | Msa0504420:intron | 45.0% | |
| TGAGGATCCACTGAGTTGTT+TGG | - | chr3_4:48858041-48858060 | Msa0504420:intron | 45.0% | |
| GAGGATCCACTGAGTTGTTT+GGG | - | chr3_4:48858042-48858061 | Msa0504420:intron | 45.0% | |
| AGGATCCACTGAGTTGTTTG+GGG | - | chr3_4:48858043-48858062 | Msa0504420:intron | 45.0% | |
| !! | ATGTTGGAGCGTTTTGAACC+TGG | - | chr3_4:48858121-48858140 | Msa0504420:intron | 45.0% |
| ! | CTCGAGTGCTAGAGAGATTT+TGG | - | chr3_4:48858270-48858289 | Msa0504420:CDS | 45.0% |
| ATGATACAAAGGCAGACCAC+AGG | + | chr3_4:48858340-48858359 | None:intergenic | 45.0% | |
| GGTCTGCCTTTGTATCATTG+TGG | - | chr3_4:48858342-48858361 | Msa0504420:CDS | 45.0% | |
| TGCCTTTGTATCATTGTGGC+TGG | - | chr3_4:48858346-48858365 | Msa0504420:CDS | 45.0% | |
| !! | TCATTGTGGCTGGTTTGGAT+TGG | - | chr3_4:48858356-48858375 | Msa0504420:CDS | 45.0% |
| ! | GATTGCAAGCCTTGTCTCAT+TGG | + | chr3_4:48858411-48858430 | None:intergenic | 45.0% |
| ACAAGGCTTGCAATCTTCTG+AGG | - | chr3_4:48858416-48858435 | Msa0504420:CDS | 45.0% | |
| CATATGCTGCAAAGTTCTGC+AGG | + | chr3_4:48858447-48858466 | None:intergenic | 45.0% | |
| AGAGAGACAAGGGTCAAACA+TGG | - | chr3_4:48858836-48858855 | Msa0504420:intron | 45.0% | |
| ACATGGCCTTCTCCCATATT+AGG | - | chr3_4:48858853-48858872 | Msa0504420:intron | 45.0% | |
| CCTTGACCTAATATGGGAGA+AGG | + | chr3_4:48858862-48858881 | None:intergenic | 45.0% | |
| CCTTCTCCCATATTAGGTCA+AGG | - | chr3_4:48858859-48858878 | Msa0504420:intron | 45.0% | |
| ! | GAGGCGTTTCTGTTCAAGAT+CGG | + | chr3_4:48858905-48858924 | None:intergenic | 45.0% |
| GCTTCAGAGATTTCAAGAGG+AGG | - | chr3_4:48858927-48858946 | Msa0504420:intron | 45.0% | |
| AGCTCTGTTTGGCAGTTTGA+AGG | - | chr3_4:48859169-48859188 | Msa0504420:intron | 45.0% | |
| GCTCTGTTTGGCAGTTTGAA+GGG | - | chr3_4:48859170-48859189 | Msa0504420:intron | 45.0% | |
| CTCTGTTTGGCAGTTTGAAG+GGG | - | chr3_4:48859171-48859190 | Msa0504420:intron | 45.0% | |
| !! | GGATTTTAGAGGGTTTCGGA+GGG | + | chr3_4:48859365-48859384 | None:intergenic | 45.0% |
| !! | AGGATTTTAGAGGGTTTCGG+AGG | + | chr3_4:48859366-48859385 | None:intergenic | 45.0% |
| GGGGAGCTCAAAACTTATAC+TGG | + | chr3_4:48859392-48859411 | None:intergenic | 45.0% | |
| ! | TTTTGAGCTCCCCCAGATTA+GGG | - | chr3_4:48859399-48859418 | Msa0504420:intron | 45.0% |
| ! | TGGAAAGGGAAAGGCTTTGA+GGG | + | chr3_4:48859453-48859472 | None:intergenic | 45.0% |
| TTGGAAAGGGAAAGGCTTTG+AGG | + | chr3_4:48859454-48859473 | None:intergenic | 45.0% | |
| CATCTGTTTGTCTAGCTGCT+AGG | - | chr3_4:48859870-48859889 | Msa0504420:intron | 45.0% | |
| AGGGGGATCTGATGATTCAA+TGG | - | chr3_4:48860122-48860141 | Msa0504420:intron | 45.0% | |
| ! | TGGACTTGGTCATGATACGA+AGG | - | chr3_4:48860142-48860161 | Msa0504420:intron | 45.0% |
| ! | GGACTTGGTCATGATACGAA+GGG | - | chr3_4:48860143-48860162 | Msa0504420:intron | 45.0% |
| CGAAGGGATGTGTCTGAATT+TGG | - | chr3_4:48860159-48860178 | Msa0504420:intron | 45.0% | |
| TTCCTCTATAGTACACCCTC+TGG | - | chr3_4:48860212-48860231 | Msa0504420:intron | 45.0% | |
| TGCATATGGATCGAGTCCAA+GGG | + | chr3_4:48860956-48860975 | None:intergenic | 45.0% | |
| ATGCATATGGATCGAGTCCA+AGG | + | chr3_4:48860957-48860976 | None:intergenic | 45.0% | |
| TCAATTTCTCCAGCTGGATC+TGG | - | chr3_4:48861002-48861021 | Msa0504420:intron | 45.0% | |
| TGGAGAATCAAGCTTCTCAG+AGG | - | chr3_4:48861177-48861196 | Msa0504420:intron | 45.0% | |
| GGAGAATCAAGCTTCTCAGA+GGG | - | chr3_4:48861178-48861197 | Msa0504420:intron | 45.0% | |
| TTCTCAGAGGGTCTTGGAAA+AGG | - | chr3_4:48861190-48861209 | Msa0504420:intron | 45.0% | |
| AGAGGGTCTTGGAAAAGGTT+GGG | - | chr3_4:48861195-48861214 | Msa0504420:intron | 45.0% | |
| TGGAAAAGGTTGGGTTCCTT+AGG | - | chr3_4:48861204-48861223 | Msa0504420:intron | 45.0% | |
| GGAAAAGGTTGGGTTCCTTA+GGG | - | chr3_4:48861205-48861224 | Msa0504420:intron | 45.0% | |
| TTCTGAGTATACCCTCCCTA+AGG | + | chr3_4:48861223-48861242 | None:intergenic | 45.0% | |
| AATGAGCGTCCTCTGACAAA+AGG | + | chr3_4:48861292-48861311 | None:intergenic | 45.0% | |
| GTGATTACTGTGGGTAGACA+CGG | - | chr3_4:48861382-48861401 | Msa0504420:intron | 45.0% | |
| TGCCAAACTGCACAAAGTGT+AGG | + | chr3_4:48861448-48861467 | None:intergenic | 45.0% | |
| CTTTGTGCAGTTTGGCAAGT+TGG | - | chr3_4:48861451-48861470 | Msa0504420:intron | 45.0% | |
| ! | AATTAATTTGGCTGGACCGC+TGG | - | chr3_4:48861810-48861829 | Msa0504420:CDS | 45.0% |
| TGATCGAATTCCACCCATGA+AGG | + | chr3_4:48862058-48862077 | None:intergenic | 45.0% | |
| ! | AACAGACTTTTGGCATCCTC+TGG | - | chr3_4:48862222-48862241 | Msa0504420:five_prime_UTR | 45.0% |
| ATCTTTCGACTGCCCTTTGT+TGG | - | chr3_4:48862252-48862271 | Msa0504420:five_prime_UTR | 45.0% | |
| TATCTGGCTAGGTGATCCAT+AGG | + | chr3_4:48862366-48862385 | None:intergenic | 45.0% | |
| !! | AAAATAATGTATTAATAAAA+TGG | + | chr3_4:48860684-48860703 | None:intergenic | 5.0% |
| !!! | ATACATTATTTTAATAAATA+AGG | - | chr3_4:48860692-48860711 | Msa0504420:CDS | 5.0% |
| GGATCCACTGAGTTGTTTGG+GGG | - | chr3_4:48858044-48858063 | Msa0504420:intron | 50.0% | |
| !! | TTGGAGCGTTTTGAACCTGG+AGG | - | chr3_4:48858124-48858143 | Msa0504420:intron | 50.0% |
| AAACGCTAAATCCAGCCTCC+AGG | + | chr3_4:48858142-48858161 | None:intergenic | 50.0% | |
| !! | TGTGGCTGGTTTGGATTGGA+TGG | - | chr3_4:48858360-48858379 | Msa0504420:CDS | 50.0% |
| CACTGTGCACCAATGAGACA+AGG | - | chr3_4:48858399-48858418 | Msa0504420:CDS | 50.0% | |
| GTGATTGAGGTCCAGTCTTG+TGG | - | chr3_4:48858479-48858498 | Msa0504420:CDS | 50.0% | |
| ! | ATTGAGGTCCAGTCTTGTGG+TGG | - | chr3_4:48858482-48858501 | Msa0504420:CDS | 50.0% |
| ! | TTGAGGTCCAGTCTTGTGGT+GGG | - | chr3_4:48858483-48858502 | Msa0504420:CDS | 50.0% |
| GGATTACAGCGAGCTAGTAC+AGG | + | chr3_4:48858671-48858690 | None:intergenic | 50.0% | |
| TGTTTGGCAGTTTGAAGGGG+AGG | - | chr3_4:48859174-48859193 | Msa0504420:intron | 50.0% | |
| GTTTGGCAGTTTGAAGGGGA+GGG | - | chr3_4:48859175-48859194 | Msa0504420:intron | 50.0% | |
| !! | GTTTTGAGCTCCCCCAGATT+AGG | - | chr3_4:48859398-48859417 | Msa0504420:intron | 50.0% |
| TTTGAGCTCCCCCAGATTAG+GGG | - | chr3_4:48859400-48859419 | Msa0504420:intron | 50.0% | |
| TTTGCAAGTTTGGAGGGGAG+GGG | + | chr3_4:48859528-48859547 | None:intergenic | 50.0% | |
| GTTTGCAAGTTTGGAGGGGA+GGG | + | chr3_4:48859529-48859548 | None:intergenic | 50.0% | |
| TGTTTGCAAGTTTGGAGGGG+AGG | + | chr3_4:48859530-48859549 | None:intergenic | 50.0% | |
| ! | GACCAGAGGGTGTACTATAG+AGG | + | chr3_4:48860217-48860236 | None:intergenic | 50.0% |
| ATATGGTGAGGTGACAGGCA+AGG | - | chr3_4:48860549-48860568 | Msa0504420:intron | 50.0% | |
| ACTCAATTCGAATGGCCGCA+AGG | + | chr3_4:48860814-48860833 | None:intergenic | 50.0% | |
| GGTGAGGAATGCACACATCT+TGG | + | chr3_4:48860935-48860954 | None:intergenic | 50.0% | |
| ATGTGTGCATTCCTCACCCT+TGG | - | chr3_4:48860937-48860956 | Msa0504420:intron | 50.0% | |
| TCATCATCACCAGATCCAGC+TGG | + | chr3_4:48861014-48861033 | None:intergenic | 50.0% | |
| GATAGGTGTAGGGCTGAGAT+TGG | - | chr3_4:48861035-48861054 | Msa0504420:intron | 50.0% | |
| GCTGCTAACTATTGGGGTCA+AGG | - | chr3_4:48861068-48861087 | Msa0504420:intron | 50.0% | |
| TCAAGCTTCTCAGAGGGTCT+TGG | - | chr3_4:48861184-48861203 | Msa0504420:intron | 50.0% | |
| CAGAGGGTCTTGGAAAAGGT+TGG | - | chr3_4:48861194-48861213 | Msa0504420:intron | 50.0% | |
| AAAGGTTGGGTTCCTTAGGG+AGG | - | chr3_4:48861208-48861227 | Msa0504420:intron | 50.0% | |
| AAGGTTGGGTTCCTTAGGGA+GGG | - | chr3_4:48861209-48861228 | Msa0504420:intron | 50.0% | |
| GGACTTCCTTCACATGAGCA+TGG | + | chr3_4:48861565-48861584 | None:intergenic | 50.0% | |
| ! | GTTGTGCCTTTTGCAGAACC+CGG | - | chr3_4:48861981-48862000 | Msa0504420:CDS | 50.0% |
| ! | TTGTGCCTTTTGCAGAACCC+GGG | - | chr3_4:48861982-48862001 | Msa0504420:CDS | 50.0% |
| CAAAACCCGGGTTCTGCAAA+AGG | + | chr3_4:48861990-48862009 | None:intergenic | 50.0% | |
| ATTCCACCCATGAAGGTCCT+CGG | + | chr3_4:48862051-48862070 | None:intergenic | 50.0% | |
| TCCACTGAGTTGTTTGGGGG+TGG | - | chr3_4:48858047-48858066 | Msa0504420:intron | 55.0% | |
| ACCACCCCCAAACAACTCAG+TGG | + | chr3_4:48858051-48858070 | None:intergenic | 55.0% | |
| !! | AGCGTTTTGAACCTGGAGGC+TGG | - | chr3_4:48858128-48858147 | Msa0504420:intron | 55.0% |
| CTCTCAACCCACCACAAGAC+TGG | + | chr3_4:48858493-48858512 | None:intergenic | 55.0% | |
| GGGTTGAGAGTGACCTTGCT+TGG | - | chr3_4:48858503-48858522 | Msa0504420:CDS | 55.0% | |
| GCAGTTTGAAGGGGAGGGTA+GGG | - | chr3_4:48859180-48859199 | Msa0504420:intron | 55.0% | |
| AGGTGACAGGCAAGGCAACA+TGG | - | chr3_4:48860557-48860576 | Msa0504420:intron | 55.0% | |
| GGTGACAGGCAAGGCAACAT+GGG | - | chr3_4:48860558-48860577 | Msa0504420:intron | 55.0% | |
| ATGGATCGAGTCCAAGGGTG+AGG | + | chr3_4:48860951-48860970 | None:intergenic | 55.0% | |
| GTGGAAACTGTCCTGATCCG+AGG | - | chr3_4:48862031-48862050 | Msa0504420:CDS | 55.0% | |
| TCCTGATCCGAGGACCTTCA+TGG | - | chr3_4:48862041-48862060 | Msa0504420:CDS | 55.0% | |
| CCTGATCCGAGGACCTTCAT+GGG | - | chr3_4:48862042-48862061 | Msa0504420:CDS | 55.0% | |
| GGCAGTTTGAAGGGGAGGGT+AGG | - | chr3_4:48859179-48859198 | Msa0504420:intron | 60.0% | |
| GGGGAGGGTAGGGTTATGAG+TGG | - | chr3_4:48859190-48859209 | Msa0504420:intron | 60.0% | |
| CAAGTTTGGAGGGGAGGGGA+GGG | + | chr3_4:48859524-48859543 | None:intergenic | 60.0% | |
| CCCATGAAGGTCCTCGGATC+AGG | + | chr3_4:48862045-48862064 | None:intergenic | 60.0% | |
| GATCCGAGGACCTTCATGGG+TGG | - | chr3_4:48862045-48862064 | Msa0504420:CDS | 60.0% | |
| GCAAGTTTGGAGGGGAGGGG+AGG | + | chr3_4:48859525-48859544 | None:intergenic | 65.0% | |
| TGGAGGGGAGGGGAGGGCTT+TGG | + | chr3_4:48859518-48859537 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 48857116 | 48862445 | 48857116 | ID=Msa0504420;Name=Msa0504420 |
| chr3_4 | mRNA | 48857116 | 48862445 | 48857116 | ID=Msa0504420-mRNA-1;Parent=Msa0504420;Name=Msa0504420-mRNA-1;_AED=0.12;_eAED=0.12;_QI=228|0.6|0.66|1|1|0.83|6|322|354 |
| chr3_4 | exon | 48857116 | 48857564 | 48857116 | ID=Msa0504420-mRNA-1:exon:10520;Parent=Msa0504420-mRNA-1 |
| chr3_4 | exon | 48858243 | 48858785 | 48858243 | ID=Msa0504420-mRNA-1:exon:10519;Parent=Msa0504420-mRNA-1 |
| chr3_4 | exon | 48860608 | 48860755 | 48860608 | ID=Msa0504420-mRNA-1:exon:10518;Parent=Msa0504420-mRNA-1 |
| chr3_4 | exon | 48861790 | 48861838 | 48861790 | ID=Msa0504420-mRNA-1:exon:10517;Parent=Msa0504420-mRNA-1 |
| chr3_4 | exon | 48861930 | 48862078 | 48861930 | ID=Msa0504420-mRNA-1:exon:10516;Parent=Msa0504420-mRNA-1 |
| chr3_4 | exon | 48862169 | 48862445 | 48862169 | ID=Msa0504420-mRNA-1:exon:10515;Parent=Msa0504420-mRNA-1 |
| chr3_4 | five_prime_UTR | 48862218 | 48862445 | 48862218 | ID=Msa0504420-mRNA-1:five_prime_utr;Parent=Msa0504420-mRNA-1 |
| chr3_4 | CDS | 48862169 | 48862217 | 48862169 | ID=Msa0504420-mRNA-1:cds;Parent=Msa0504420-mRNA-1 |
| chr3_4 | CDS | 48861930 | 48862078 | 48861930 | ID=Msa0504420-mRNA-1:cds;Parent=Msa0504420-mRNA-1 |
| chr3_4 | CDS | 48861790 | 48861838 | 48861790 | ID=Msa0504420-mRNA-1:cds;Parent=Msa0504420-mRNA-1 |
| chr3_4 | CDS | 48860608 | 48860755 | 48860608 | ID=Msa0504420-mRNA-1:cds;Parent=Msa0504420-mRNA-1 |
| chr3_4 | CDS | 48858243 | 48858785 | 48858243 | ID=Msa0504420-mRNA-1:cds;Parent=Msa0504420-mRNA-1 |
| chr3_4 | CDS | 48857438 | 48857564 | 48857438 | ID=Msa0504420-mRNA-1:cds;Parent=Msa0504420-mRNA-1 |
| chr3_4 | three_prime_UTR | 48857116 | 48857437 | 48857116 | ID=Msa0504420-mRNA-1:three_prime_utr;Parent=Msa0504420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
