AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0504580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504580 MtrunA17_Chr3g0105121 69.873 395 68 6 14 396 1 356 0.0 514
Msa0504580 MtrunA17_Chr1g0187591 46.465 396 129 9 7 363 187 538 6.40e-90 285
Msa0504580 MtrunA17_Chr3g0105151 59.910 222 68 2 203 403 1 222 2.62e-76 236
Msa0504580 MtrunA17_Chr3g0105131 44.709 378 140 10 21 380 179 505 1.29e-74 241
Msa0504580 MtrunA17_Chr5g0430211 40.000 360 155 11 21 329 229 578 8.02e-62 211
Msa0504580 MtrunA17_Chr3g0105101 51.064 235 86 6 52 286 196 401 2.62e-61 203
Msa0504580 MtrunA17_Chr5g0437251 35.556 405 177 13 21 365 216 596 6.96e-55 192
Msa0504580 MtrunA17_Chr7g0257831 37.993 279 126 7 21 276 263 517 1.54e-51 184
Msa0504580 MtrunA17_Chr3g0105141 67.227 119 35 2 21 136 35 152 6.40e-51 169
Msa0504580 MtrunA17_Chr3g0088521 34.648 355 172 10 21 338 263 594 4.33e-48 174
Msa0504580 MtrunA17_Chr3g0113651 61.017 118 43 2 21 136 162 278 8.08e-45 162
Msa0504580 MtrunA17_Chr3g0092221 46.853 143 67 3 21 155 157 298 1.16e-39 146
Msa0504580 MtrunA17_Chr3g0135351 53.846 117 52 1 21 135 52 168 3.61e-39 141
Msa0504580 MtrunA17_Chr8g0389561 51.587 126 58 2 20 143 79 203 8.01e-39 143
Msa0504580 MtrunA17_Chr3g0092171 51.064 141 56 4 21 149 274 413 1.15e-37 142
Msa0504580 MtrunA17_Chr1g0171151 34.799 273 132 10 21 275 243 487 1.37e-36 140
Msa0504580 MtrunA17_Chr6g0487481 55.238 105 44 2 21 123 102 205 1.20e-35 134
Msa0504580 MtrunA17_Chr2g0324781 50.893 112 52 2 22 131 77 187 1.46e-32 127
Msa0504580 MtrunA17_Chr4g0040391 49.524 105 50 2 21 123 59 162 2.52e-30 119
Msa0504580 MtrunA17_Chr3g0105111 54.054 74 27 3 335 403 5 76 1.66e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504580 AT2G41900.1 41.245 257 116 6 21 269 260 489 1.52e-52 187
Msa0504580 AT5G58620.1 36.288 361 179 13 21 363 208 535 1.90e-51 182
Msa0504580 AT2G40140.2 39.858 281 119 10 21 294 213 450 1.12e-48 174
Msa0504580 AT2G40140.1 39.858 281 119 10 21 294 213 450 1.12e-48 174
Msa0504580 AT5G12850.1 40.449 267 129 9 21 276 256 503 2.60e-48 175
Msa0504580 AT3G55980.1 36.338 355 155 17 21 365 210 503 3.28e-45 164
Msa0504580 AT3G55980.2 35.511 352 162 13 21 365 277 570 6.88e-45 164
Msa0504580 AT4G29190.1 44.595 148 79 2 21 166 78 224 2.40e-37 139
Msa0504580 AT2G25900.2 49.606 127 61 2 21 145 89 214 3.37e-37 137
Msa0504580 AT2G25900.1 49.606 127 61 2 21 145 89 214 3.37e-37 137
Msa0504580 AT1G03790.1 51.667 120 53 2 21 135 81 200 9.00e-36 135
Msa0504580 AT5G44260.1 54.206 107 47 1 21 125 59 165 1.56e-35 134
Msa0504580 AT2G19810.1 52.336 107 48 2 21 125 77 182 2.96e-34 130
Msa0504580 AT5G07500.1 52.381 105 47 2 21 123 51 154 1.68e-33 125

Find 101 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACAACGCTTTGCAATAA+TGG 0.289322 3_4:+49301845 Msa0504580:CDS
CAGAAACAAGATTGCCTTAA+GGG 0.313508 3_4:+49301557 Msa0504580:intron
TGGTTAGATCACAACAGTTC+AGG 0.360050 3_4:+49302455 Msa0504580:CDS
CCGCGATAGAAAATTAGAAT+TGG 0.366017 3_4:+49302624 Msa0504580:CDS
CTACTTGACCCTTCTATCAT+TGG 0.369851 3_4:-49302298 None:intergenic
ATGCCGAATCCAATGATAGA+AGG 0.372921 3_4:+49302289 Msa0504580:CDS
GAAGGGTCAAGTAGGCTTGC+TGG 0.383335 3_4:+49302307 Msa0504580:CDS
AATATAGATCATGCAGTAAA+GGG 0.387652 3_4:+49301765 Msa0504580:CDS
TGATCTAACCACATTAGAAT+TGG 0.391379 3_4:-49302443 None:intergenic
GACCCTTCTATCATTGGATT+CGG 0.397498 3_4:-49302292 None:intergenic
TGCTGCTCTCGATAAAGTTC+TGG 0.399385 3_4:-49302525 None:intergenic
ATGACCTAAAATAGCCTTCA+AGG 0.400438 3_4:-49302345 None:intergenic
AAATAGCCTTCAAGGTTAGT+AGG 0.406034 3_4:-49302337 None:intergenic
TTTCAAAACCTGCTCCCTTA+AGG 0.407360 3_4:-49301571 None:intergenic
AAATGTCCCTTTGCTCATCA+TGG 0.414986 3_4:+49301674 Msa0504580:CDS
GCACATGGTGTTCTTGAGTC+CGG 0.419484 3_4:+49301803 Msa0504580:CDS
ATTGCGGTTATGTTCATGAT+TGG 0.421921 3_4:+49301648 Msa0504580:CDS
GGCCACATGGTTCTTTCTGC+AGG 0.427795 3_4:-49302145 None:intergenic
GAGCCTTCAACTGCCTTGTC+CGG 0.428713 3_4:+49302592 Msa0504580:CDS
CAACTTCAACATTACAATGT+TGG 0.436387 3_4:-49302754 None:intergenic
AATTATATTGCTTCGGATCA+CGG 0.437370 3_4:-49301712 None:intergenic
TACATCAAATGTTGATGATC+AGG 0.442359 3_4:+49302678 Msa0504580:CDS
TGCTAGAGATAATACTCATC+TGG 0.443782 3_4:+49302240 Msa0504580:CDS
TTTCTGAAATTCATTACAAT+GGG 0.449878 3_4:-49301744 None:intergenic
CGCGATAGAAAATTAGAATT+GGG 0.450636 3_4:+49302625 Msa0504580:CDS
ACAATCTCCGACAGCAATGC+AGG 0.452955 3_4:+49302372 Msa0504580:CDS
TTCAACGGGCGAAGTTCCTC+AGG 0.454486 3_4:-49301908 None:intergenic
TCTATCGCGGGAGCGCCAAC+CGG 0.455223 3_4:-49302611 None:intergenic
CATCTGTAATTATATTGCTT+CGG 0.456547 3_4:-49301719 None:intergenic
CTTCAACTGCCTTGTCCGGT+TGG 0.459307 3_4:+49302596 Msa0504580:CDS
TTGCTCGGCATCTGAGGTGT+AGG 0.459489 3_4:-49302106 None:intergenic
TTGCTCGGCATCTGAGGTGT+AGG 0.459489 3_4:-49302196 None:intergenic
AGATTCTACCTCAGTTGCAT+TGG 0.462466 3_4:+49302570 Msa0504580:CDS
GCAGAAACAAGATTGCCTTA+AGG 0.462483 3_4:+49301556 Msa0504580:intron
AACTGGTACTAGCATTCAAC+GGG 0.465209 3_4:-49301922 None:intergenic
CAAGATTGCCTTAAGGGAGC+AGG 0.465339 3_4:+49301563 Msa0504580:CDS
ATGTGAAGGCAAAGCAGAAC+TGG 0.466124 3_4:-49301939 None:intergenic
AATGCAACTGAGGTAGAATC+TGG 0.470321 3_4:-49302568 None:intergenic
CAACCGGACAAGGCAGTTGA+AGG 0.470983 3_4:-49302595 None:intergenic
AAATATAGATCATGCAGTAA+AGG 0.479750 3_4:+49301764 Msa0504580:CDS
CAAGATATGATGCCCTTTCG+AGG 0.483484 3_4:+49302497 Msa0504580:CDS
GGCCACATGGTTCTTCCTGC+AGG 0.483695 3_4:-49302055 None:intergenic
ATTTCTGAAATTCATTACAA+TGG 0.490595 3_4:-49301745 None:intergenic
GGTTAGATCACAACAGTTCA+GGG 0.493239 3_4:+49302456 Msa0504580:CDS
GTCCAAGGCGGCATCGATGA+AGG 0.500707 3_4:-49302013 None:intergenic
AATCTGTTGCTCGGCATCTG+AGG 0.505565 3_4:-49302202 None:intergenic
AATGTCCCTTTGCTCATCAT+GGG 0.509346 3_4:+49301675 Msa0504580:CDS
TGAGGTAGAATCTGGAAGCT+TGG 0.511466 3_4:-49302560 None:intergenic
TGCCTTCATCGATGCCGCCT+TGG 0.512659 3_4:+49302011 Msa0504580:CDS
AATCTGTTGCTCGGCATCTG+AGG 0.528491 3_4:-49302112 None:intergenic
CACATGGTGTTCTTGAGTCC+GGG 0.529152 3_4:+49301804 Msa0504580:CDS
GTGAATCCTACTAACCTTGA+AGG 0.531036 3_4:+49302331 Msa0504580:CDS
GATGGATTATTAAGATATGA+AGG 0.531625 3_4:+49302700 Msa0504580:CDS
AAGGATATATCTGAAGTTGT+TGG 0.532786 3_4:-49302411 None:intergenic
GCGGGAGCGCCAACCGGACA+AGG 0.532944 3_4:-49302605 None:intergenic
CTTTCCCCATGATGAGCAAA+GGG 0.533381 3_4:-49301680 None:intergenic
TATGATATCAATCTGTTGCT+CGG 0.538210 3_4:-49302121 None:intergenic
ATTATTAAGATATGAAGGTA+TGG 0.540701 3_4:+49302705 Msa0504580:CDS
AGTTCTGGCTCTGCCTCGAA+AGG 0.544056 3_4:-49302510 None:intergenic
TAACCACATTAGAATTGGTA+AGG 0.551193 3_4:-49302438 None:intergenic
TGCTCGGCATCTGAGGTGTA+GGG 0.552789 3_4:-49302105 None:intergenic
TGCTCGGCATCTGAGGTGTA+GGG 0.552789 3_4:-49302195 None:intergenic
TATGGTTAATGAACTTGTGA+AGG 0.556348 3_4:+49302723 Msa0504580:CDS
GCAGTATTCAATCTGTTGCT+CGG 0.567984 3_4:-49302211 None:intergenic
TCACCTTACCAATTCTAATG+TGG 0.568314 3_4:+49302435 Msa0504580:CDS
CACTAGCAACACTTCAACAA+TGG 0.568642 3_4:+49302651 Msa0504580:CDS
TTAGAATTGGTAAGGTGAGA+AGG 0.571244 3_4:-49302430 None:intergenic
GATATTGCAGACGGTGTCCA+AGG 0.573927 3_4:-49302028 None:intergenic
GCTTTCCCCATGATGAGCAA+AGG 0.578685 3_4:-49301681 None:intergenic
CAATGATAGAAGGGTCAAGT+AGG 0.578738 3_4:+49302299 Msa0504580:CDS
GTATACATTGCAGAAGCACT+TGG 0.582995 3_4:-49301980 None:intergenic
CTTCTTTGCTCACAAACCTG+AGG 0.585534 3_4:+49301892 Msa0504580:CDS
TGCCGAATCCAATGATAGAA+GGG 0.587494 3_4:+49302290 Msa0504580:CDS
GTACTAATCTGAGTCGGAGT+CGG 0.588992 3_4:-49302166 None:intergenic
GTTCTGGCTCTGCCTCGAAA+GGG 0.592388 3_4:-49302509 None:intergenic
CTGAGTCGGAGTCGGCCACA+TGG 0.594746 3_4:-49302068 None:intergenic
CAATCTCCGACAGCAATGCA+GGG 0.598628 3_4:+49302373 Msa0504580:CDS
GTACGATTCTGAGTCGGAGT+CGG 0.598804 3_4:-49302076 None:intergenic
GAACTGGTACTAGCATTCAA+CGG 0.603434 3_4:-49301923 None:intergenic
TCAAATGTTGATGATCAGGA+TGG 0.604566 3_4:+49302682 Msa0504580:CDS
CTGAGTCGGAGTCGGCCACA+TGG 0.607724 3_4:-49302158 None:intergenic
TGATACCCCTGCATTGCTGT+CGG 0.611093 3_4:-49302379 None:intergenic
TCTGCAATATCATATCCTGC+AGG 0.614316 3_4:+49302040 Msa0504580:CDS
ACTGTAGTACTAATCTGAGT+CGG 0.618849 3_4:-49302172 None:intergenic
ACATTCAAAGTGCGGCATTG+CGG 0.631811 3_4:+49301632 Msa0504580:CDS
TGATGTATACATTCAAAGTG+CGG 0.634386 3_4:+49301624 Msa0504580:CDS
CTTTATCGAGAGCAGCAGCA+TGG 0.636540 3_4:+49302531 Msa0504580:CDS
TTTGAATATAATGTATGTGA+AGG 0.637611 3_4:-49301953 None:intergenic
GCAGGATATGATATTGCAGA+CGG 0.643899 3_4:-49302037 None:intergenic
ATATAGATCATGCAGTAAAG+GGG 0.646866 3_4:+49301766 Msa0504580:CDS
TGAAGGCTCCAATGCAACTG+AGG 0.649434 3_4:-49302578 None:intergenic
ATGTCCCTTTGCTCATCATG+GGG 0.650802 3_4:+49301676 Msa0504580:CDS
ACTGTAGTACGATTCTGAGT+CGG 0.653294 3_4:-49302082 None:intergenic
GTATCGACTAGGATGCAGCC+CGG 0.668994 3_4:-49301822 None:intergenic
AGCGTTGTTCTGTATCGACT+AGG 0.678911 3_4:-49301833 None:intergenic
AATCTCCGACAGCAATGCAG+GGG 0.691632 3_4:+49302374 Msa0504580:CDS
GTTAGATCACAACAGTTCAG+GGG 0.713618 3_4:+49302457 Msa0504580:CDS
ATTGCAGACGGTGTCCAAGG+CGG 0.715505 3_4:-49302025 None:intergenic
GATGAATGTCAATATGCACA+TGG 0.762142 3_4:+49301788 Msa0504580:CDS
ATCCTGCAGGAAGAACCATG+TGG 0.814597 3_4:+49302053 Msa0504580:CDS
ATCCTGCAGAAAGAACCATG+TGG 0.834161 3_4:+49302143 Msa0504580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAGATATTGATTATTTAT+AGG + chr3_4:49299311-49299330 Msa0504580:intron 10.0%
!! CCAAATTAAAAATTAAAAAT+TGG - chr3_4:49299521-49299540 None:intergenic 10.0%
!!! CCAATTTTTAATTTTTAATT+TGG + chr3_4:49299518-49299537 Msa0504580:intron 10.0%
!! AGAATATATAATTAGATTAG+AGG - chr3_4:49299805-49299824 None:intergenic 15.0%
!!! TTTAAGAAGTTTTTATTCAT+TGG + chr3_4:49299864-49299883 Msa0504580:intron 15.0%
!! ATAAGAAAAATACATAAAGA+GGG - chr3_4:49301055-49301074 None:intergenic 15.0%
!! AATAAGAAAAATACATAAAG+AGG - chr3_4:49301056-49301075 None:intergenic 15.0%
!!! ATTTGGTTATTTTGTTAATA+AGG + chr3_4:49301398-49301417 Msa0504580:intron 15.0%
!! TCATATCTTGAATTAAAAAA+TGG - chr3_4:49302487-49302506 None:intergenic 15.0%
!! TCTAATGTTAGTTATAACAT+TGG + chr3_4:49299236-49299255 Msa0504580:intron 20.0%
!!! TTTTTATTCATTGGTTCTTT+GGG + chr3_4:49299873-49299892 Msa0504580:intron 20.0%
!! TTATAGAAAGCTTAACTTAA+TGG + chr3_4:49299936-49299955 Msa0504580:intron 20.0%
!!! ACTCAATATTGATATTTTCA+GGG - chr3_4:49299985-49300004 None:intergenic 20.0%
!!! AACTCAATATTGATATTTTC+AGG - chr3_4:49299986-49300005 None:intergenic 20.0%
!! ATAAAATAACTGCACAATAT+TGG + chr3_4:49300402-49300421 Msa0504580:intron 20.0%
!!! TTTGTTGTTTTATGATTTTG+AGG - chr3_4:49300697-49300716 None:intergenic 20.0%
!! TAAAAGAACTTACATGAATA+AGG - chr3_4:49300800-49300819 None:intergenic 20.0%
!!! ATTTTTCTTATTCTTCTTGA+TGG + chr3_4:49301064-49301083 Msa0504580:intron 20.0%
!!! TTTTTCTTATTCTTCTTGAT+GGG + chr3_4:49301065-49301084 Msa0504580:intron 20.0%
!! AAAACAATACAAAGAATTCT+GGG - chr3_4:49301375-49301394 None:intergenic 20.0%
!! CAAAAAATAAGAACAAACAA+TGG - chr3_4:49301439-49301458 None:intergenic 20.0%
!!! TTTCTGAAATTCATTACAAT+GGG - chr3_4:49301747-49301766 None:intergenic 20.0%
!!! ATTTCTGAAATTCATTACAA+TGG - chr3_4:49301748-49301767 None:intergenic 20.0%
!! TTTGAATATAATGTATGTGA+AGG - chr3_4:49301956-49301975 None:intergenic 20.0%
!! ATTATTAAGATATGAAGGTA+TGG + chr3_4:49302705-49302724 Msa0504580:CDS 20.0%
! GGCATCAAATTATAATATGA+AGG - chr3_4:49299668-49299687 None:intergenic 25.0%
!!! GTTTTTATTCATTGGTTCTT+TGG + chr3_4:49299872-49299891 Msa0504580:intron 25.0%
! CTAAAATAAGGATTAAAGCA+AGG - chr3_4:49300133-49300152 None:intergenic 25.0%
! CTTATGATTCAAATGTACAA+GGG - chr3_4:49300156-49300175 None:intergenic 25.0%
! ACTTATGATTCAAATGTACA+AGG - chr3_4:49300157-49300176 None:intergenic 25.0%
! GAAAGATTTCAATAAGTTCA+TGG - chr3_4:49300184-49300203 None:intergenic 25.0%
! ATCCTCAAAATGCAAAATTA+AGG + chr3_4:49300289-49300308 Msa0504580:intron 25.0%
!! ATCCTTAATTTTGCATTTTG+AGG - chr3_4:49300294-49300313 None:intergenic 25.0%
!!! TTTCTAAAACCTTCAAGTTT+TGG + chr3_4:49300990-49301009 Msa0504580:intron 25.0%
!!! TTCTAAAACCTTCAAGTTTT+GGG + chr3_4:49300991-49301010 Msa0504580:intron 25.0%
!!! GAGATTACAATGTGTTTTTT+TGG + chr3_4:49301132-49301151 Msa0504580:intron 25.0%
!! CTAAGAAAGTTTCTGAAAAA+TGG + chr3_4:49301158-49301177 Msa0504580:intron 25.0%
! TTAGATTAAGAACACAACAA+TGG - chr3_4:49301286-49301305 None:intergenic 25.0%
! CTAACAATATTAAATGCAGT+TGG + chr3_4:49301302-49301321 Msa0504580:intron 25.0%
! CAAAACAATACAAAGAATTC+TGG - chr3_4:49301376-49301395 None:intergenic 25.0%
!!! CTTTGTATTGTTTTGCTATT+TGG + chr3_4:49301381-49301400 Msa0504580:intron 25.0%
! CTACAAAATCATCAATTACT+AGG - chr3_4:49301528-49301547 None:intergenic 25.0%
! CATCTGTAATTATATTGCTT+CGG - chr3_4:49301722-49301741 None:intergenic 25.0%
! AAATATAGATCATGCAGTAA+AGG + chr3_4:49301764-49301783 Msa0504580:CDS 25.0%
! AATATAGATCATGCAGTAAA+GGG + chr3_4:49301765-49301784 Msa0504580:CDS 25.0%
!!! GATGGATTATTAAGATATGA+AGG + chr3_4:49302700-49302719 Msa0504580:CDS 25.0%
TGAACAACAAAGCAAGATAA+TGG - chr3_4:49299412-49299431 None:intergenic 30.0%
TACATAAATCACAGTTCTCT+TGG - chr3_4:49299458-49299477 None:intergenic 30.0%
GACTCAAACAAGAATGAAAT+AGG - chr3_4:49299572-49299591 None:intergenic 30.0%
AGACATTGCAAGAATCTAAA+AGG - chr3_4:49299689-49299708 None:intergenic 30.0%
!! ATTTTGTTGCTGTTATTGAC+TGG + chr3_4:49299762-49299781 Msa0504580:intron 30.0%
! CATATGTACCATTGATGATT+CGG + chr3_4:49299827-49299846 Msa0504580:intron 30.0%
!! TATTGATATTTTCAGGGAGA+AGG - chr3_4:49299979-49299998 None:intergenic 30.0%
AATGTACAAGGGCTAAAATA+AGG - chr3_4:49300145-49300164 None:intergenic 30.0%
TCATATTTCAGAGTTACTTG+AGG - chr3_4:49300538-49300557 None:intergenic 30.0%
AATATCAGCTCAAAACAGTT+AGG - chr3_4:49300589-49300608 None:intergenic 30.0%
!! AACTGTTTTGAGCTGATATT+TGG + chr3_4:49300589-49300608 Msa0504580:intron 30.0%
GTTTAGAAACTTGAGAAACA+AGG - chr3_4:49300753-49300772 None:intergenic 30.0%
TTTGAAAAGATCGCATCTTT+AGG - chr3_4:49300877-49300896 None:intergenic 30.0%
! AAGATTGCAATGTGTTTTCT+TGG + chr3_4:49300905-49300924 Msa0504580:intron 30.0%
! AATTCAGAACACAGTTTTTC+AGG - chr3_4:49300945-49300964 None:intergenic 30.0%
!! TCTAAAACCTTCAAGTTTTG+GGG + chr3_4:49300992-49301011 Msa0504580:intron 30.0%
!! GTGTTTTGAATTGTTTGTTC+TGG + chr3_4:49301182-49301201 Msa0504580:intron 30.0%
AGGAAATTAGCAACATGTAT+TGG - chr3_4:49301508-49301527 None:intergenic 30.0%
TGATGTATACATTCAAAGTG+CGG + chr3_4:49301624-49301643 Msa0504580:CDS 30.0%
AATTATATTGCTTCGGATCA+CGG - chr3_4:49301715-49301734 None:intergenic 30.0%
ATATAGATCATGCAGTAAAG+GGG + chr3_4:49301766-49301785 Msa0504580:CDS 30.0%
TATGATATCAATCTGTTGCT+CGG - chr3_4:49302124-49302143 None:intergenic 30.0%
! AAGGATATATCTGAAGTTGT+TGG - chr3_4:49302414-49302433 None:intergenic 30.0%
TAACCACATTAGAATTGGTA+AGG - chr3_4:49302441-49302460 None:intergenic 30.0%
TGATCTAACCACATTAGAAT+TGG - chr3_4:49302446-49302465 None:intergenic 30.0%
! CAATTCTAATTTTCTATCGC+GGG - chr3_4:49302626-49302645 None:intergenic 30.0%
! CCAATTCTAATTTTCTATCG+CGG - chr3_4:49302627-49302646 None:intergenic 30.0%
CGCGATAGAAAATTAGAATT+GGG + chr3_4:49302625-49302644 Msa0504580:CDS 30.0%
!! TACATCAAATGTTGATGATC+AGG + chr3_4:49302678-49302697 Msa0504580:CDS 30.0%
TATGGTTAATGAACTTGTGA+AGG + chr3_4:49302723-49302742 Msa0504580:CDS 30.0%
! ATGCAAGTATTTTGCAGACT+AGG + chr3_4:49299371-49299390 Msa0504580:intron 35.0%
! TGCAAGTATTTTGCAGACTA+GGG + chr3_4:49299372-49299391 Msa0504580:intron 35.0%
!!! TGTTTTAGCGTAATCTGAGA+CGG + chr3_4:49299716-49299735 Msa0504580:intron 35.0%
CGAATCATCAATGGTACATA+TGG - chr3_4:49299829-49299848 None:intergenic 35.0%
TAGTTGAGTTTATCGAGCAT+AGG + chr3_4:49299904-49299923 Msa0504580:intron 35.0%
AGTTGAGTTTATCGAGCATA+GGG + chr3_4:49299905-49299924 Msa0504580:intron 35.0%
TACAAGGGAAAAATTTGCCT+AGG + chr3_4:49300075-49300094 Msa0504580:intron 35.0%
ACAAGGGAAAAATTTGCCTA+GGG + chr3_4:49300076-49300095 Msa0504580:intron 35.0%
CTGTATAGATATGTCGTATC+AGG - chr3_4:49300340-49300359 None:intergenic 35.0%
ATTACATAGCTCCCATCATA+AGG + chr3_4:49300463-49300482 Msa0504580:intron 35.0%
AAGCAAAGTTACTCTACATG+AGG - chr3_4:49300499-49300518 None:intergenic 35.0%
! TTTTGAGCTGATATTTGGCT+TGG + chr3_4:49300594-49300613 Msa0504580:intron 35.0%
TTAGAAGAAGAGCTGGTAAT+AGG + chr3_4:49300634-49300653 Msa0504580:intron 35.0%
AAACTTGAGAAACAAGGCAA+AGG - chr3_4:49300747-49300766 None:intergenic 35.0%
TCTAAACCTTCACCAGATTT+CGG + chr3_4:49300766-49300785 Msa0504580:intron 35.0%
AAGAAGAACTTACATGAGCA+AGG - chr3_4:49301024-49301043 None:intergenic 35.0%
!! CTTGATGGGTCATTAAGTTT+TGG + chr3_4:49301079-49301098 Msa0504580:intron 35.0%
ATGCTTTATCTTTCACTCTC+TGG + chr3_4:49301241-49301260 Msa0504580:intron 35.0%
CAGAAACAAGATTGCCTTAA+GGG + chr3_4:49301557-49301576 Msa0504580:intron 35.0%
ATTGCGGTTATGTTCATGAT+TGG + chr3_4:49301648-49301667 Msa0504580:CDS 35.0%
GATGAATGTCAATATGCACA+TGG + chr3_4:49301788-49301807 Msa0504580:CDS 35.0%
AGAACAACGCTTTGCAATAA+TGG + chr3_4:49301845-49301864 Msa0504580:CDS 35.0%
ACTGTAGTACTAATCTGAGT+CGG - chr3_4:49302175-49302194 None:intergenic 35.0%
TGCTAGAGATAATACTCATC+TGG + chr3_4:49302240-49302259 Msa0504580:CDS 35.0%
AAATAGCCTTCAAGGTTAGT+AGG - chr3_4:49302340-49302359 None:intergenic 35.0%
!! CTAACCTTGAAGGCTATTTT+AGG + chr3_4:49302341-49302360 Msa0504580:CDS 35.0%
ATGACCTAAAATAGCCTTCA+AGG - chr3_4:49302348-49302367 None:intergenic 35.0%
TTAGAATTGGTAAGGTGAGA+AGG - chr3_4:49302433-49302452 None:intergenic 35.0%
TCACCTTACCAATTCTAATG+TGG + chr3_4:49302435-49302454 Msa0504580:CDS 35.0%
CCGCGATAGAAAATTAGAAT+TGG + chr3_4:49302624-49302643 Msa0504580:CDS 35.0%
!! TCAAATGTTGATGATCAGGA+TGG + chr3_4:49302682-49302701 Msa0504580:CDS 35.0%
GCAGACTAGGGTATAGTATA+TGG + chr3_4:49299384-49299403 Msa0504580:intron 40.0%
TTGCAAGTGTTAGACATGTG+TGG + chr3_4:49299630-49299649 Msa0504580:intron 40.0%
!! ATGATTCGGCATGCTACTTT+CGG + chr3_4:49299841-49299860 Msa0504580:intron 40.0%
ATAGCTCCCATCATAAGGTA+AGG + chr3_4:49300468-49300487 Msa0504580:intron 40.0%
ATCTGACTTAGAAGAAGAGC+TGG + chr3_4:49300627-49300646 Msa0504580:intron 40.0%
AAACAAGGCAAAGGAAGAAG+TGG - chr3_4:49300738-49300757 None:intergenic 40.0%
GCAGAAACAAGATTGCCTTA+AGG + chr3_4:49301556-49301575 Msa0504580:intron 40.0%
TTTCAAAACCTGCTCCCTTA+AGG - chr3_4:49301574-49301593 None:intergenic 40.0%
!!! TAAGGGAGCAGGTTTTGAAA+TGG + chr3_4:49301574-49301593 Msa0504580:CDS 40.0%
AAATGTCCCTTTGCTCATCA+TGG + chr3_4:49301674-49301693 Msa0504580:CDS 40.0%
AATGTCCCTTTGCTCATCAT+GGG + chr3_4:49301675-49301694 Msa0504580:CDS 40.0%
AACTGGTACTAGCATTCAAC+GGG - chr3_4:49301925-49301944 None:intergenic 40.0%
GAACTGGTACTAGCATTCAA+CGG - chr3_4:49301926-49301945 None:intergenic 40.0%
!! GTATACATTGCAGAAGCACT+TGG - chr3_4:49301983-49302002 None:intergenic 40.0%
GCAGGATATGATATTGCAGA+CGG - chr3_4:49302040-49302059 None:intergenic 40.0%
TCTGCAATATCATATCCTGC+AGG + chr3_4:49302040-49302059 Msa0504580:CDS 40.0%
ACTGTAGTACGATTCTGAGT+CGG - chr3_4:49302085-49302104 None:intergenic 40.0%
GCAGTATTCAATCTGTTGCT+CGG - chr3_4:49302214-49302233 None:intergenic 40.0%
ATGCCGAATCCAATGATAGA+AGG + chr3_4:49302289-49302308 Msa0504580:CDS 40.0%
TGCCGAATCCAATGATAGAA+GGG + chr3_4:49302290-49302309 Msa0504580:CDS 40.0%
GACCCTTCTATCATTGGATT+CGG - chr3_4:49302295-49302314 None:intergenic 40.0%
CTACTTGACCCTTCTATCAT+TGG - chr3_4:49302301-49302320 None:intergenic 40.0%
CAATGATAGAAGGGTCAAGT+AGG + chr3_4:49302299-49302318 Msa0504580:CDS 40.0%
GTGAATCCTACTAACCTTGA+AGG + chr3_4:49302331-49302350 Msa0504580:CDS 40.0%
TGGTTAGATCACAACAGTTC+AGG + chr3_4:49302455-49302474 Msa0504580:CDS 40.0%
GGTTAGATCACAACAGTTCA+GGG + chr3_4:49302456-49302475 Msa0504580:CDS 40.0%
GTTAGATCACAACAGTTCAG+GGG + chr3_4:49302457-49302476 Msa0504580:CDS 40.0%
AATGCAACTGAGGTAGAATC+TGG - chr3_4:49302571-49302590 None:intergenic 40.0%
AGATTCTACCTCAGTTGCAT+TGG + chr3_4:49302570-49302589 Msa0504580:CDS 40.0%
CACTAGCAACACTTCAACAA+TGG + chr3_4:49302651-49302670 Msa0504580:CDS 40.0%
!! ATAAAGACTCTAGAGCGCAG+AGG - chr3_4:49299264-49299283 None:intergenic 45.0%
GTAGCATGCCGAATCATCAA+TGG - chr3_4:49299838-49299857 None:intergenic 45.0%
AGGGAAAAATTTGCCTAGGG+AGG + chr3_4:49300079-49300098 Msa0504580:intron 45.0%
! ACAGAATCTAAGACCTCCCT+AGG - chr3_4:49300095-49300114 None:intergenic 45.0%
GTGCAGCCTTACCTTATGAT+GGG - chr3_4:49300477-49300496 None:intergenic 45.0%
GAAACAGCCCCAAAACTTGA+AGG - chr3_4:49301002-49301021 None:intergenic 45.0%
ACATTCAAAGTGCGGCATTG+CGG + chr3_4:49301632-49301651 Msa0504580:CDS 45.0%
ATGTCCCTTTGCTCATCATG+GGG + chr3_4:49301676-49301695 Msa0504580:CDS 45.0%
CTTTCCCCATGATGAGCAAA+GGG - chr3_4:49301683-49301702 None:intergenic 45.0%
!! AGCGTTGTTCTGTATCGACT+AGG - chr3_4:49301836-49301855 None:intergenic 45.0%
CTTCTTTGCTCACAAACCTG+AGG + chr3_4:49301892-49301911 Msa0504580:CDS 45.0%
ATGTGAAGGCAAAGCAGAAC+TGG - chr3_4:49301942-49301961 None:intergenic 45.0%
ATCCTGCAGAAAGAACCATG+TGG + chr3_4:49302143-49302162 Msa0504580:CDS 45.0%
GTACTAATCTGAGTCGGAGT+CGG - chr3_4:49302169-49302188 None:intergenic 45.0%
CAAGATATGATGCCCTTTCG+AGG + chr3_4:49302497-49302516 Msa0504580:CDS 45.0%
TGCTGCTCTCGATAAAGTTC+TGG - chr3_4:49302528-49302547 None:intergenic 45.0%
TGAGGTAGAATCTGGAAGCT+TGG - chr3_4:49302563-49302582 None:intergenic 45.0%
!! TATATATATATATATATACA+AGG + chr3_4:49300059-49300078 Msa0504580:intron 5.0%
!! ATATATATATATATATACAA+GGG + chr3_4:49300060-49300079 Msa0504580:intron 5.0%
GTGTTAGACATGTGTGGCAC+TGG + chr3_4:49299636-49299655 Msa0504580:intron 50.0%
GGTGCAGCCTTACCTTATGA+TGG - chr3_4:49300478-49300497 None:intergenic 50.0%
AAGGAACCTGCACCGAAATC+TGG - chr3_4:49300781-49300800 None:intergenic 50.0%
CAAGATTGCCTTAAGGGAGC+AGG + chr3_4:49301563-49301582 Msa0504580:CDS 50.0%
GCTTTCCCCATGATGAGCAA+AGG - chr3_4:49301684-49301703 None:intergenic 50.0%
GCACATGGTGTTCTTGAGTC+CGG + chr3_4:49301803-49301822 Msa0504580:CDS 50.0%
CACATGGTGTTCTTGAGTCC+GGG + chr3_4:49301804-49301823 Msa0504580:CDS 50.0%
GATATTGCAGACGGTGTCCA+AGG - chr3_4:49302031-49302050 None:intergenic 50.0%
ATCCTGCAGGAAGAACCATG+TGG + chr3_4:49302053-49302072 Msa0504580:CDS 50.0%
GTACGATTCTGAGTCGGAGT+CGG - chr3_4:49302079-49302098 None:intergenic 50.0%
AATCTGTTGCTCGGCATCTG+AGG - chr3_4:49302115-49302134 None:intergenic 50.0%
AATCTGTTGCTCGGCATCTG+AGG - chr3_4:49302115-49302134 None:intergenic 50.0%
ACAATCTCCGACAGCAATGC+AGG + chr3_4:49302372-49302391 Msa0504580:CDS 50.0%
CAATCTCCGACAGCAATGCA+GGG + chr3_4:49302373-49302392 Msa0504580:CDS 50.0%
AATCTCCGACAGCAATGCAG+GGG + chr3_4:49302374-49302393 Msa0504580:CDS 50.0%
TGATACCCCTGCATTGCTGT+CGG - chr3_4:49302382-49302401 None:intergenic 50.0%
CTTTATCGAGAGCAGCAGCA+TGG + chr3_4:49302531-49302550 Msa0504580:CDS 50.0%
TGAAGGCTCCAATGCAACTG+AGG - chr3_4:49302581-49302600 None:intergenic 50.0%
AGGTGACTAGTGCAGCAGCT+TGG + chr3_4:49300654-49300673 Msa0504580:intron 55.0%
TGACTAGTGCAGCAGCTTGG+TGG + chr3_4:49300657-49300676 Msa0504580:intron 55.0%
GACTAGTGCAGCAGCTTGGT+GGG + chr3_4:49300658-49300677 Msa0504580:intron 55.0%
CCTGCACCGAAATCTGGTGA+AGG - chr3_4:49300775-49300794 None:intergenic 55.0%
! CCTTCACCAGATTTCGGTGC+AGG + chr3_4:49300772-49300791 Msa0504580:intron 55.0%
!! GTATCGACTAGGATGCAGCC+CGG - chr3_4:49301825-49301844 None:intergenic 55.0%
TTCAACGGGCGAAGTTCCTC+AGG - chr3_4:49301911-49301930 None:intergenic 55.0%
ATTGCAGACGGTGTCCAAGG+CGG - chr3_4:49302028-49302047 None:intergenic 55.0%
! TGCTCGGCATCTGAGGTGTA+GGG - chr3_4:49302108-49302127 None:intergenic 55.0%
! TTGCTCGGCATCTGAGGTGT+AGG - chr3_4:49302109-49302128 None:intergenic 55.0%
GGCCACATGGTTCTTTCTGC+AGG - chr3_4:49302148-49302167 None:intergenic 55.0%
! TGCTCGGCATCTGAGGTGTA+GGG - chr3_4:49302108-49302127 None:intergenic 55.0%
! TTGCTCGGCATCTGAGGTGT+AGG - chr3_4:49302109-49302128 None:intergenic 55.0%
GAAGGGTCAAGTAGGCTTGC+TGG + chr3_4:49302307-49302326 Msa0504580:CDS 55.0%
!! GTTCTGGCTCTGCCTCGAAA+GGG - chr3_4:49302512-49302531 None:intergenic 55.0%
!! AGTTCTGGCTCTGCCTCGAA+AGG - chr3_4:49302513-49302532 None:intergenic 55.0%
GAGCCTTCAACTGCCTTGTC+CGG + chr3_4:49302592-49302611 Msa0504580:CDS 55.0%
CAACCGGACAAGGCAGTTGA+AGG - chr3_4:49302598-49302617 None:intergenic 55.0%
CTTCAACTGCCTTGTCCGGT+TGG + chr3_4:49302596-49302615 Msa0504580:CDS 55.0%
TGCCTTCATCGATGCCGCCT+TGG + chr3_4:49302011-49302030 Msa0504580:CDS 60.0%
!! GTCCAAGGCGGCATCGATGA+AGG - chr3_4:49302016-49302035 None:intergenic 60.0%
GGCCACATGGTTCTTCCTGC+AGG - chr3_4:49302058-49302077 None:intergenic 60.0%
CTGAGTCGGAGTCGGCCACA+TGG - chr3_4:49302071-49302090 None:intergenic 65.0%
CTGAGTCGGAGTCGGCCACA+TGG - chr3_4:49302071-49302090 None:intergenic 65.0%
!! TCTATCGCGGGAGCGCCAAC+CGG - chr3_4:49302614-49302633 None:intergenic 65.0%
!! GCGGGAGCGCCAACCGGACA+AGG - chr3_4:49302608-49302627 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 49299223 49302765 49299223 ID=Msa0504580;Name=Msa0504580
chr3_4 mRNA 49299223 49302765 49299223 ID=Msa0504580-mRNA-1;Parent=Msa0504580;Name=Msa0504580-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|0|0.5|2|0|403
chr3_4 exon 49299223 49299228 49299223 ID=Msa0504580-mRNA-1:exon:10591;Parent=Msa0504580-mRNA-1
chr3_4 exon 49301560 49302765 49301560 ID=Msa0504580-mRNA-1:exon:10592;Parent=Msa0504580-mRNA-1
chr3_4 CDS 49299223 49299228 49299223 ID=Msa0504580-mRNA-1:cds;Parent=Msa0504580-mRNA-1
chr3_4 CDS 49301560 49302765 49301560 ID=Msa0504580-mRNA-1:cds;Parent=Msa0504580-mRNA-1
Gene Sequence

>Msa0504580

ATGGTGAAACAAGATTGCCTTAAGGGAGCAGGTTTTGAAATGGAGAAGCAGCAACAAGATGATGAATTTATGATGTATACATTCAAAGTGCGGCATTGCGGTTATGTTCATGATTGGAAAAAATGTCCCTTTGCTCATCATGGGGAAAGCATAAAACGCCGTGATCCGAAGCAATATAATTACAGATGTGCCCATTGTAATGAATTTCAGAAATATAGATCATGCAGTAAAGGGGATGAATGTCAATATGCACATGGTGTTCTTGAGTCCGGGCTGCATCCTAGTCGATACAGAACAACGCTTTGCAATAATGGAACTACATGCACAAGAGAAGTTTGCTTCTTTGCTCACAAACCTGAGGAACTTCGCCCGTTGAATGCTAGTACCAGTTCTGCTTTGCCTTCACATACATTATATTCAAATTCACCAAGTGCTTCTGCAATGTATACTTTCACATTGCCTTCATCGATGCCGCCTTGGACACCGTCTGCAATATCATATCCTGCAGGAAGAACCATGTGGCCGACTCCGACTCAGAATCGTACTACAGTCCCTACACCTCAGATGCCGAGCAACAGATTGATATCATATCCTGCAGAAAGAACCATGTGGCCGACTCCGACTCAGATTAGTACTACAGTCCCTACACCTCAGATGCCGAGCAACAGATTGAATACTGCATTGAATGCTAGAGATAATACTCATCTGGACATGAAATTTTTCGAATATCACAATATGCCGAATCCAATGATAGAAGGGTCAAGTAGGCTTGCTGGAGTGAATCCTACTAACCTTGAAGGCTATTTTAGGTCATCGATACAATCTCCGACAGCAATGCAGGGGTATCAGAATGTGAACCAACAACTTCAGATATATCCTTCTCACCTTACCAATTCTAATGTGGTTAGATCACAACAGTTCAGGGGTGATCCATTTTTTAATTCAAGATATGATGCCCTTTCGAGGCAGAGCCAGAACTTTATCGAGAGCAGCAGCATGGCAAGCTCCAAGCTTCCAGATTCTACCTCAGTTGCATTGGAGCCTTCAACTGCCTTGTCCGGTTGGCGCTCCCGCGATAGAAAATTAGAATTGGGTGACACTAGCAACACTTCAACAATGGCTGCTACATCAAATGTTGATGATCAGGATGGATTATTAAGATATGAAGGTATGGTTAATGAACTTGTGAAGGAAGACGATCCAACATTGTAA

Protein sequence

>Msa0504580

MVKQDCLKGAGFEMEKQQQDDEFMMYTFKVRHCGYVHDWKKCPFAHHGESIKRRDPKQYNYRCAHCNEFQKYRSCSKGDECQYAHGVLESGLHPSRYRTTLCNNGTTCTREVCFFAHKPEELRPLNASTSSALPSHTLYSNSPSASAMYTFTLPSSMPPWTPSAISYPAGRTMWPTPTQNRTTVPTPQMPSNRLISYPAERTMWPTPTQISTTVPTPQMPSNRLNTALNARDNTHLDMKFFEYHNMPNPMIEGSSRLAGVNPTNLEGYFRSSIQSPTAMQGYQNVNQQLQIYPSHLTNSNVVRSQQFRGDPFFNSRYDALSRQSQNFIESSSMASSKLPDSTSVALEPSTALSGWRSRDRKLELGDTSNTSTMAATSNVDDQDGLLRYEGMVNELVKEDDPTL*