Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0504580 | XP_013460262.1 | 69.873 | 395 | 68 | 6 | 14 | 396 | 1 | 356 | 1.50e-179 | 514 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0504580 | sp|P93755|C3H30_ARATH | 41.245 | 257 | 116 | 6 | 21 | 269 | 260 | 489 | 1.49e-51 | 187 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0504580 | A0A072UYW3 | 69.873 | 395 | 68 | 6 | 14 | 396 | 1 | 356 | 7.16e-180 | 514 |
Gene ID | Type | Classification |
---|---|---|
Msa0504580 | TF | C3H |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0504580 | MtrunA17_Chr3g0105121 | 69.873 | 395 | 68 | 6 | 14 | 396 | 1 | 356 | 0.0 | 514 |
Msa0504580 | MtrunA17_Chr1g0187591 | 46.465 | 396 | 129 | 9 | 7 | 363 | 187 | 538 | 6.40e-90 | 285 |
Msa0504580 | MtrunA17_Chr3g0105151 | 59.910 | 222 | 68 | 2 | 203 | 403 | 1 | 222 | 2.62e-76 | 236 |
Msa0504580 | MtrunA17_Chr3g0105131 | 44.709 | 378 | 140 | 10 | 21 | 380 | 179 | 505 | 1.29e-74 | 241 |
Msa0504580 | MtrunA17_Chr5g0430211 | 40.000 | 360 | 155 | 11 | 21 | 329 | 229 | 578 | 8.02e-62 | 211 |
Msa0504580 | MtrunA17_Chr3g0105101 | 51.064 | 235 | 86 | 6 | 52 | 286 | 196 | 401 | 2.62e-61 | 203 |
Msa0504580 | MtrunA17_Chr5g0437251 | 35.556 | 405 | 177 | 13 | 21 | 365 | 216 | 596 | 6.96e-55 | 192 |
Msa0504580 | MtrunA17_Chr7g0257831 | 37.993 | 279 | 126 | 7 | 21 | 276 | 263 | 517 | 1.54e-51 | 184 |
Msa0504580 | MtrunA17_Chr3g0105141 | 67.227 | 119 | 35 | 2 | 21 | 136 | 35 | 152 | 6.40e-51 | 169 |
Msa0504580 | MtrunA17_Chr3g0088521 | 34.648 | 355 | 172 | 10 | 21 | 338 | 263 | 594 | 4.33e-48 | 174 |
Msa0504580 | MtrunA17_Chr3g0113651 | 61.017 | 118 | 43 | 2 | 21 | 136 | 162 | 278 | 8.08e-45 | 162 |
Msa0504580 | MtrunA17_Chr3g0092221 | 46.853 | 143 | 67 | 3 | 21 | 155 | 157 | 298 | 1.16e-39 | 146 |
Msa0504580 | MtrunA17_Chr3g0135351 | 53.846 | 117 | 52 | 1 | 21 | 135 | 52 | 168 | 3.61e-39 | 141 |
Msa0504580 | MtrunA17_Chr8g0389561 | 51.587 | 126 | 58 | 2 | 20 | 143 | 79 | 203 | 8.01e-39 | 143 |
Msa0504580 | MtrunA17_Chr3g0092171 | 51.064 | 141 | 56 | 4 | 21 | 149 | 274 | 413 | 1.15e-37 | 142 |
Msa0504580 | MtrunA17_Chr1g0171151 | 34.799 | 273 | 132 | 10 | 21 | 275 | 243 | 487 | 1.37e-36 | 140 |
Msa0504580 | MtrunA17_Chr6g0487481 | 55.238 | 105 | 44 | 2 | 21 | 123 | 102 | 205 | 1.20e-35 | 134 |
Msa0504580 | MtrunA17_Chr2g0324781 | 50.893 | 112 | 52 | 2 | 22 | 131 | 77 | 187 | 1.46e-32 | 127 |
Msa0504580 | MtrunA17_Chr4g0040391 | 49.524 | 105 | 50 | 2 | 21 | 123 | 59 | 162 | 2.52e-30 | 119 |
Msa0504580 | MtrunA17_Chr3g0105111 | 54.054 | 74 | 27 | 3 | 335 | 403 | 5 | 76 | 1.66e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0504580 | AT2G41900.1 | 41.245 | 257 | 116 | 6 | 21 | 269 | 260 | 489 | 1.52e-52 | 187 |
Msa0504580 | AT5G58620.1 | 36.288 | 361 | 179 | 13 | 21 | 363 | 208 | 535 | 1.90e-51 | 182 |
Msa0504580 | AT2G40140.2 | 39.858 | 281 | 119 | 10 | 21 | 294 | 213 | 450 | 1.12e-48 | 174 |
Msa0504580 | AT2G40140.1 | 39.858 | 281 | 119 | 10 | 21 | 294 | 213 | 450 | 1.12e-48 | 174 |
Msa0504580 | AT5G12850.1 | 40.449 | 267 | 129 | 9 | 21 | 276 | 256 | 503 | 2.60e-48 | 175 |
Msa0504580 | AT3G55980.1 | 36.338 | 355 | 155 | 17 | 21 | 365 | 210 | 503 | 3.28e-45 | 164 |
Msa0504580 | AT3G55980.2 | 35.511 | 352 | 162 | 13 | 21 | 365 | 277 | 570 | 6.88e-45 | 164 |
Msa0504580 | AT4G29190.1 | 44.595 | 148 | 79 | 2 | 21 | 166 | 78 | 224 | 2.40e-37 | 139 |
Msa0504580 | AT2G25900.2 | 49.606 | 127 | 61 | 2 | 21 | 145 | 89 | 214 | 3.37e-37 | 137 |
Msa0504580 | AT2G25900.1 | 49.606 | 127 | 61 | 2 | 21 | 145 | 89 | 214 | 3.37e-37 | 137 |
Msa0504580 | AT1G03790.1 | 51.667 | 120 | 53 | 2 | 21 | 135 | 81 | 200 | 9.00e-36 | 135 |
Msa0504580 | AT5G44260.1 | 54.206 | 107 | 47 | 1 | 21 | 125 | 59 | 165 | 1.56e-35 | 134 |
Msa0504580 | AT2G19810.1 | 52.336 | 107 | 48 | 2 | 21 | 125 | 77 | 182 | 2.96e-34 | 130 |
Msa0504580 | AT5G07500.1 | 52.381 | 105 | 47 | 2 | 21 | 123 | 51 | 154 | 1.68e-33 | 125 |
Find 101 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAACAACGCTTTGCAATAA+TGG | 0.289322 | 3_4:+49301845 | Msa0504580:CDS |
CAGAAACAAGATTGCCTTAA+GGG | 0.313508 | 3_4:+49301557 | Msa0504580:intron |
TGGTTAGATCACAACAGTTC+AGG | 0.360050 | 3_4:+49302455 | Msa0504580:CDS |
CCGCGATAGAAAATTAGAAT+TGG | 0.366017 | 3_4:+49302624 | Msa0504580:CDS |
CTACTTGACCCTTCTATCAT+TGG | 0.369851 | 3_4:-49302298 | None:intergenic |
ATGCCGAATCCAATGATAGA+AGG | 0.372921 | 3_4:+49302289 | Msa0504580:CDS |
GAAGGGTCAAGTAGGCTTGC+TGG | 0.383335 | 3_4:+49302307 | Msa0504580:CDS |
AATATAGATCATGCAGTAAA+GGG | 0.387652 | 3_4:+49301765 | Msa0504580:CDS |
TGATCTAACCACATTAGAAT+TGG | 0.391379 | 3_4:-49302443 | None:intergenic |
GACCCTTCTATCATTGGATT+CGG | 0.397498 | 3_4:-49302292 | None:intergenic |
TGCTGCTCTCGATAAAGTTC+TGG | 0.399385 | 3_4:-49302525 | None:intergenic |
ATGACCTAAAATAGCCTTCA+AGG | 0.400438 | 3_4:-49302345 | None:intergenic |
AAATAGCCTTCAAGGTTAGT+AGG | 0.406034 | 3_4:-49302337 | None:intergenic |
TTTCAAAACCTGCTCCCTTA+AGG | 0.407360 | 3_4:-49301571 | None:intergenic |
AAATGTCCCTTTGCTCATCA+TGG | 0.414986 | 3_4:+49301674 | Msa0504580:CDS |
GCACATGGTGTTCTTGAGTC+CGG | 0.419484 | 3_4:+49301803 | Msa0504580:CDS |
ATTGCGGTTATGTTCATGAT+TGG | 0.421921 | 3_4:+49301648 | Msa0504580:CDS |
GGCCACATGGTTCTTTCTGC+AGG | 0.427795 | 3_4:-49302145 | None:intergenic |
GAGCCTTCAACTGCCTTGTC+CGG | 0.428713 | 3_4:+49302592 | Msa0504580:CDS |
CAACTTCAACATTACAATGT+TGG | 0.436387 | 3_4:-49302754 | None:intergenic |
AATTATATTGCTTCGGATCA+CGG | 0.437370 | 3_4:-49301712 | None:intergenic |
TACATCAAATGTTGATGATC+AGG | 0.442359 | 3_4:+49302678 | Msa0504580:CDS |
TGCTAGAGATAATACTCATC+TGG | 0.443782 | 3_4:+49302240 | Msa0504580:CDS |
TTTCTGAAATTCATTACAAT+GGG | 0.449878 | 3_4:-49301744 | None:intergenic |
CGCGATAGAAAATTAGAATT+GGG | 0.450636 | 3_4:+49302625 | Msa0504580:CDS |
ACAATCTCCGACAGCAATGC+AGG | 0.452955 | 3_4:+49302372 | Msa0504580:CDS |
TTCAACGGGCGAAGTTCCTC+AGG | 0.454486 | 3_4:-49301908 | None:intergenic |
TCTATCGCGGGAGCGCCAAC+CGG | 0.455223 | 3_4:-49302611 | None:intergenic |
CATCTGTAATTATATTGCTT+CGG | 0.456547 | 3_4:-49301719 | None:intergenic |
CTTCAACTGCCTTGTCCGGT+TGG | 0.459307 | 3_4:+49302596 | Msa0504580:CDS |
TTGCTCGGCATCTGAGGTGT+AGG | 0.459489 | 3_4:-49302106 | None:intergenic |
TTGCTCGGCATCTGAGGTGT+AGG | 0.459489 | 3_4:-49302196 | None:intergenic |
AGATTCTACCTCAGTTGCAT+TGG | 0.462466 | 3_4:+49302570 | Msa0504580:CDS |
GCAGAAACAAGATTGCCTTA+AGG | 0.462483 | 3_4:+49301556 | Msa0504580:intron |
AACTGGTACTAGCATTCAAC+GGG | 0.465209 | 3_4:-49301922 | None:intergenic |
CAAGATTGCCTTAAGGGAGC+AGG | 0.465339 | 3_4:+49301563 | Msa0504580:CDS |
ATGTGAAGGCAAAGCAGAAC+TGG | 0.466124 | 3_4:-49301939 | None:intergenic |
AATGCAACTGAGGTAGAATC+TGG | 0.470321 | 3_4:-49302568 | None:intergenic |
CAACCGGACAAGGCAGTTGA+AGG | 0.470983 | 3_4:-49302595 | None:intergenic |
AAATATAGATCATGCAGTAA+AGG | 0.479750 | 3_4:+49301764 | Msa0504580:CDS |
CAAGATATGATGCCCTTTCG+AGG | 0.483484 | 3_4:+49302497 | Msa0504580:CDS |
GGCCACATGGTTCTTCCTGC+AGG | 0.483695 | 3_4:-49302055 | None:intergenic |
ATTTCTGAAATTCATTACAA+TGG | 0.490595 | 3_4:-49301745 | None:intergenic |
GGTTAGATCACAACAGTTCA+GGG | 0.493239 | 3_4:+49302456 | Msa0504580:CDS |
GTCCAAGGCGGCATCGATGA+AGG | 0.500707 | 3_4:-49302013 | None:intergenic |
AATCTGTTGCTCGGCATCTG+AGG | 0.505565 | 3_4:-49302202 | None:intergenic |
AATGTCCCTTTGCTCATCAT+GGG | 0.509346 | 3_4:+49301675 | Msa0504580:CDS |
TGAGGTAGAATCTGGAAGCT+TGG | 0.511466 | 3_4:-49302560 | None:intergenic |
TGCCTTCATCGATGCCGCCT+TGG | 0.512659 | 3_4:+49302011 | Msa0504580:CDS |
AATCTGTTGCTCGGCATCTG+AGG | 0.528491 | 3_4:-49302112 | None:intergenic |
CACATGGTGTTCTTGAGTCC+GGG | 0.529152 | 3_4:+49301804 | Msa0504580:CDS |
GTGAATCCTACTAACCTTGA+AGG | 0.531036 | 3_4:+49302331 | Msa0504580:CDS |
GATGGATTATTAAGATATGA+AGG | 0.531625 | 3_4:+49302700 | Msa0504580:CDS |
AAGGATATATCTGAAGTTGT+TGG | 0.532786 | 3_4:-49302411 | None:intergenic |
GCGGGAGCGCCAACCGGACA+AGG | 0.532944 | 3_4:-49302605 | None:intergenic |
CTTTCCCCATGATGAGCAAA+GGG | 0.533381 | 3_4:-49301680 | None:intergenic |
TATGATATCAATCTGTTGCT+CGG | 0.538210 | 3_4:-49302121 | None:intergenic |
ATTATTAAGATATGAAGGTA+TGG | 0.540701 | 3_4:+49302705 | Msa0504580:CDS |
AGTTCTGGCTCTGCCTCGAA+AGG | 0.544056 | 3_4:-49302510 | None:intergenic |
TAACCACATTAGAATTGGTA+AGG | 0.551193 | 3_4:-49302438 | None:intergenic |
TGCTCGGCATCTGAGGTGTA+GGG | 0.552789 | 3_4:-49302105 | None:intergenic |
TGCTCGGCATCTGAGGTGTA+GGG | 0.552789 | 3_4:-49302195 | None:intergenic |
TATGGTTAATGAACTTGTGA+AGG | 0.556348 | 3_4:+49302723 | Msa0504580:CDS |
GCAGTATTCAATCTGTTGCT+CGG | 0.567984 | 3_4:-49302211 | None:intergenic |
TCACCTTACCAATTCTAATG+TGG | 0.568314 | 3_4:+49302435 | Msa0504580:CDS |
CACTAGCAACACTTCAACAA+TGG | 0.568642 | 3_4:+49302651 | Msa0504580:CDS |
TTAGAATTGGTAAGGTGAGA+AGG | 0.571244 | 3_4:-49302430 | None:intergenic |
GATATTGCAGACGGTGTCCA+AGG | 0.573927 | 3_4:-49302028 | None:intergenic |
GCTTTCCCCATGATGAGCAA+AGG | 0.578685 | 3_4:-49301681 | None:intergenic |
CAATGATAGAAGGGTCAAGT+AGG | 0.578738 | 3_4:+49302299 | Msa0504580:CDS |
GTATACATTGCAGAAGCACT+TGG | 0.582995 | 3_4:-49301980 | None:intergenic |
CTTCTTTGCTCACAAACCTG+AGG | 0.585534 | 3_4:+49301892 | Msa0504580:CDS |
TGCCGAATCCAATGATAGAA+GGG | 0.587494 | 3_4:+49302290 | Msa0504580:CDS |
GTACTAATCTGAGTCGGAGT+CGG | 0.588992 | 3_4:-49302166 | None:intergenic |
GTTCTGGCTCTGCCTCGAAA+GGG | 0.592388 | 3_4:-49302509 | None:intergenic |
CTGAGTCGGAGTCGGCCACA+TGG | 0.594746 | 3_4:-49302068 | None:intergenic |
CAATCTCCGACAGCAATGCA+GGG | 0.598628 | 3_4:+49302373 | Msa0504580:CDS |
GTACGATTCTGAGTCGGAGT+CGG | 0.598804 | 3_4:-49302076 | None:intergenic |
GAACTGGTACTAGCATTCAA+CGG | 0.603434 | 3_4:-49301923 | None:intergenic |
TCAAATGTTGATGATCAGGA+TGG | 0.604566 | 3_4:+49302682 | Msa0504580:CDS |
CTGAGTCGGAGTCGGCCACA+TGG | 0.607724 | 3_4:-49302158 | None:intergenic |
TGATACCCCTGCATTGCTGT+CGG | 0.611093 | 3_4:-49302379 | None:intergenic |
TCTGCAATATCATATCCTGC+AGG | 0.614316 | 3_4:+49302040 | Msa0504580:CDS |
ACTGTAGTACTAATCTGAGT+CGG | 0.618849 | 3_4:-49302172 | None:intergenic |
ACATTCAAAGTGCGGCATTG+CGG | 0.631811 | 3_4:+49301632 | Msa0504580:CDS |
TGATGTATACATTCAAAGTG+CGG | 0.634386 | 3_4:+49301624 | Msa0504580:CDS |
CTTTATCGAGAGCAGCAGCA+TGG | 0.636540 | 3_4:+49302531 | Msa0504580:CDS |
TTTGAATATAATGTATGTGA+AGG | 0.637611 | 3_4:-49301953 | None:intergenic |
GCAGGATATGATATTGCAGA+CGG | 0.643899 | 3_4:-49302037 | None:intergenic |
ATATAGATCATGCAGTAAAG+GGG | 0.646866 | 3_4:+49301766 | Msa0504580:CDS |
TGAAGGCTCCAATGCAACTG+AGG | 0.649434 | 3_4:-49302578 | None:intergenic |
ATGTCCCTTTGCTCATCATG+GGG | 0.650802 | 3_4:+49301676 | Msa0504580:CDS |
ACTGTAGTACGATTCTGAGT+CGG | 0.653294 | 3_4:-49302082 | None:intergenic |
GTATCGACTAGGATGCAGCC+CGG | 0.668994 | 3_4:-49301822 | None:intergenic |
AGCGTTGTTCTGTATCGACT+AGG | 0.678911 | 3_4:-49301833 | None:intergenic |
AATCTCCGACAGCAATGCAG+GGG | 0.691632 | 3_4:+49302374 | Msa0504580:CDS |
GTTAGATCACAACAGTTCAG+GGG | 0.713618 | 3_4:+49302457 | Msa0504580:CDS |
ATTGCAGACGGTGTCCAAGG+CGG | 0.715505 | 3_4:-49302025 | None:intergenic |
GATGAATGTCAATATGCACA+TGG | 0.762142 | 3_4:+49301788 | Msa0504580:CDS |
ATCCTGCAGGAAGAACCATG+TGG | 0.814597 | 3_4:+49302053 | Msa0504580:CDS |
ATCCTGCAGAAAGAACCATG+TGG | 0.834161 | 3_4:+49302143 | Msa0504580:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATAGATATTGATTATTTAT+AGG | + | chr3_4:49299311-49299330 | Msa0504580:intron | 10.0% |
!! | CCAAATTAAAAATTAAAAAT+TGG | - | chr3_4:49299521-49299540 | None:intergenic | 10.0% |
!!! | CCAATTTTTAATTTTTAATT+TGG | + | chr3_4:49299518-49299537 | Msa0504580:intron | 10.0% |
!! | AGAATATATAATTAGATTAG+AGG | - | chr3_4:49299805-49299824 | None:intergenic | 15.0% |
!!! | TTTAAGAAGTTTTTATTCAT+TGG | + | chr3_4:49299864-49299883 | Msa0504580:intron | 15.0% |
!! | ATAAGAAAAATACATAAAGA+GGG | - | chr3_4:49301055-49301074 | None:intergenic | 15.0% |
!! | AATAAGAAAAATACATAAAG+AGG | - | chr3_4:49301056-49301075 | None:intergenic | 15.0% |
!!! | ATTTGGTTATTTTGTTAATA+AGG | + | chr3_4:49301398-49301417 | Msa0504580:intron | 15.0% |
!! | TCATATCTTGAATTAAAAAA+TGG | - | chr3_4:49302487-49302506 | None:intergenic | 15.0% |
!! | TCTAATGTTAGTTATAACAT+TGG | + | chr3_4:49299236-49299255 | Msa0504580:intron | 20.0% |
!!! | TTTTTATTCATTGGTTCTTT+GGG | + | chr3_4:49299873-49299892 | Msa0504580:intron | 20.0% |
!! | TTATAGAAAGCTTAACTTAA+TGG | + | chr3_4:49299936-49299955 | Msa0504580:intron | 20.0% |
!!! | ACTCAATATTGATATTTTCA+GGG | - | chr3_4:49299985-49300004 | None:intergenic | 20.0% |
!!! | AACTCAATATTGATATTTTC+AGG | - | chr3_4:49299986-49300005 | None:intergenic | 20.0% |
!! | ATAAAATAACTGCACAATAT+TGG | + | chr3_4:49300402-49300421 | Msa0504580:intron | 20.0% |
!!! | TTTGTTGTTTTATGATTTTG+AGG | - | chr3_4:49300697-49300716 | None:intergenic | 20.0% |
!! | TAAAAGAACTTACATGAATA+AGG | - | chr3_4:49300800-49300819 | None:intergenic | 20.0% |
!!! | ATTTTTCTTATTCTTCTTGA+TGG | + | chr3_4:49301064-49301083 | Msa0504580:intron | 20.0% |
!!! | TTTTTCTTATTCTTCTTGAT+GGG | + | chr3_4:49301065-49301084 | Msa0504580:intron | 20.0% |
!! | AAAACAATACAAAGAATTCT+GGG | - | chr3_4:49301375-49301394 | None:intergenic | 20.0% |
!! | CAAAAAATAAGAACAAACAA+TGG | - | chr3_4:49301439-49301458 | None:intergenic | 20.0% |
!!! | TTTCTGAAATTCATTACAAT+GGG | - | chr3_4:49301747-49301766 | None:intergenic | 20.0% |
!!! | ATTTCTGAAATTCATTACAA+TGG | - | chr3_4:49301748-49301767 | None:intergenic | 20.0% |
!! | TTTGAATATAATGTATGTGA+AGG | - | chr3_4:49301956-49301975 | None:intergenic | 20.0% |
!! | ATTATTAAGATATGAAGGTA+TGG | + | chr3_4:49302705-49302724 | Msa0504580:CDS | 20.0% |
! | GGCATCAAATTATAATATGA+AGG | - | chr3_4:49299668-49299687 | None:intergenic | 25.0% |
!!! | GTTTTTATTCATTGGTTCTT+TGG | + | chr3_4:49299872-49299891 | Msa0504580:intron | 25.0% |
! | CTAAAATAAGGATTAAAGCA+AGG | - | chr3_4:49300133-49300152 | None:intergenic | 25.0% |
! | CTTATGATTCAAATGTACAA+GGG | - | chr3_4:49300156-49300175 | None:intergenic | 25.0% |
! | ACTTATGATTCAAATGTACA+AGG | - | chr3_4:49300157-49300176 | None:intergenic | 25.0% |
! | GAAAGATTTCAATAAGTTCA+TGG | - | chr3_4:49300184-49300203 | None:intergenic | 25.0% |
! | ATCCTCAAAATGCAAAATTA+AGG | + | chr3_4:49300289-49300308 | Msa0504580:intron | 25.0% |
!! | ATCCTTAATTTTGCATTTTG+AGG | - | chr3_4:49300294-49300313 | None:intergenic | 25.0% |
!!! | TTTCTAAAACCTTCAAGTTT+TGG | + | chr3_4:49300990-49301009 | Msa0504580:intron | 25.0% |
!!! | TTCTAAAACCTTCAAGTTTT+GGG | + | chr3_4:49300991-49301010 | Msa0504580:intron | 25.0% |
!!! | GAGATTACAATGTGTTTTTT+TGG | + | chr3_4:49301132-49301151 | Msa0504580:intron | 25.0% |
!! | CTAAGAAAGTTTCTGAAAAA+TGG | + | chr3_4:49301158-49301177 | Msa0504580:intron | 25.0% |
! | TTAGATTAAGAACACAACAA+TGG | - | chr3_4:49301286-49301305 | None:intergenic | 25.0% |
! | CTAACAATATTAAATGCAGT+TGG | + | chr3_4:49301302-49301321 | Msa0504580:intron | 25.0% |
! | CAAAACAATACAAAGAATTC+TGG | - | chr3_4:49301376-49301395 | None:intergenic | 25.0% |
!!! | CTTTGTATTGTTTTGCTATT+TGG | + | chr3_4:49301381-49301400 | Msa0504580:intron | 25.0% |
! | CTACAAAATCATCAATTACT+AGG | - | chr3_4:49301528-49301547 | None:intergenic | 25.0% |
! | CATCTGTAATTATATTGCTT+CGG | - | chr3_4:49301722-49301741 | None:intergenic | 25.0% |
! | AAATATAGATCATGCAGTAA+AGG | + | chr3_4:49301764-49301783 | Msa0504580:CDS | 25.0% |
! | AATATAGATCATGCAGTAAA+GGG | + | chr3_4:49301765-49301784 | Msa0504580:CDS | 25.0% |
!!! | GATGGATTATTAAGATATGA+AGG | + | chr3_4:49302700-49302719 | Msa0504580:CDS | 25.0% |
TGAACAACAAAGCAAGATAA+TGG | - | chr3_4:49299412-49299431 | None:intergenic | 30.0% | |
TACATAAATCACAGTTCTCT+TGG | - | chr3_4:49299458-49299477 | None:intergenic | 30.0% | |
GACTCAAACAAGAATGAAAT+AGG | - | chr3_4:49299572-49299591 | None:intergenic | 30.0% | |
AGACATTGCAAGAATCTAAA+AGG | - | chr3_4:49299689-49299708 | None:intergenic | 30.0% | |
!! | ATTTTGTTGCTGTTATTGAC+TGG | + | chr3_4:49299762-49299781 | Msa0504580:intron | 30.0% |
! | CATATGTACCATTGATGATT+CGG | + | chr3_4:49299827-49299846 | Msa0504580:intron | 30.0% |
!! | TATTGATATTTTCAGGGAGA+AGG | - | chr3_4:49299979-49299998 | None:intergenic | 30.0% |
AATGTACAAGGGCTAAAATA+AGG | - | chr3_4:49300145-49300164 | None:intergenic | 30.0% | |
TCATATTTCAGAGTTACTTG+AGG | - | chr3_4:49300538-49300557 | None:intergenic | 30.0% | |
AATATCAGCTCAAAACAGTT+AGG | - | chr3_4:49300589-49300608 | None:intergenic | 30.0% | |
!! | AACTGTTTTGAGCTGATATT+TGG | + | chr3_4:49300589-49300608 | Msa0504580:intron | 30.0% |
GTTTAGAAACTTGAGAAACA+AGG | - | chr3_4:49300753-49300772 | None:intergenic | 30.0% | |
TTTGAAAAGATCGCATCTTT+AGG | - | chr3_4:49300877-49300896 | None:intergenic | 30.0% | |
! | AAGATTGCAATGTGTTTTCT+TGG | + | chr3_4:49300905-49300924 | Msa0504580:intron | 30.0% |
! | AATTCAGAACACAGTTTTTC+AGG | - | chr3_4:49300945-49300964 | None:intergenic | 30.0% |
!! | TCTAAAACCTTCAAGTTTTG+GGG | + | chr3_4:49300992-49301011 | Msa0504580:intron | 30.0% |
!! | GTGTTTTGAATTGTTTGTTC+TGG | + | chr3_4:49301182-49301201 | Msa0504580:intron | 30.0% |
AGGAAATTAGCAACATGTAT+TGG | - | chr3_4:49301508-49301527 | None:intergenic | 30.0% | |
TGATGTATACATTCAAAGTG+CGG | + | chr3_4:49301624-49301643 | Msa0504580:CDS | 30.0% | |
AATTATATTGCTTCGGATCA+CGG | - | chr3_4:49301715-49301734 | None:intergenic | 30.0% | |
ATATAGATCATGCAGTAAAG+GGG | + | chr3_4:49301766-49301785 | Msa0504580:CDS | 30.0% | |
TATGATATCAATCTGTTGCT+CGG | - | chr3_4:49302124-49302143 | None:intergenic | 30.0% | |
! | AAGGATATATCTGAAGTTGT+TGG | - | chr3_4:49302414-49302433 | None:intergenic | 30.0% |
TAACCACATTAGAATTGGTA+AGG | - | chr3_4:49302441-49302460 | None:intergenic | 30.0% | |
TGATCTAACCACATTAGAAT+TGG | - | chr3_4:49302446-49302465 | None:intergenic | 30.0% | |
! | CAATTCTAATTTTCTATCGC+GGG | - | chr3_4:49302626-49302645 | None:intergenic | 30.0% |
! | CCAATTCTAATTTTCTATCG+CGG | - | chr3_4:49302627-49302646 | None:intergenic | 30.0% |
CGCGATAGAAAATTAGAATT+GGG | + | chr3_4:49302625-49302644 | Msa0504580:CDS | 30.0% | |
!! | TACATCAAATGTTGATGATC+AGG | + | chr3_4:49302678-49302697 | Msa0504580:CDS | 30.0% |
TATGGTTAATGAACTTGTGA+AGG | + | chr3_4:49302723-49302742 | Msa0504580:CDS | 30.0% | |
! | ATGCAAGTATTTTGCAGACT+AGG | + | chr3_4:49299371-49299390 | Msa0504580:intron | 35.0% |
! | TGCAAGTATTTTGCAGACTA+GGG | + | chr3_4:49299372-49299391 | Msa0504580:intron | 35.0% |
!!! | TGTTTTAGCGTAATCTGAGA+CGG | + | chr3_4:49299716-49299735 | Msa0504580:intron | 35.0% |
CGAATCATCAATGGTACATA+TGG | - | chr3_4:49299829-49299848 | None:intergenic | 35.0% | |
TAGTTGAGTTTATCGAGCAT+AGG | + | chr3_4:49299904-49299923 | Msa0504580:intron | 35.0% | |
AGTTGAGTTTATCGAGCATA+GGG | + | chr3_4:49299905-49299924 | Msa0504580:intron | 35.0% | |
TACAAGGGAAAAATTTGCCT+AGG | + | chr3_4:49300075-49300094 | Msa0504580:intron | 35.0% | |
ACAAGGGAAAAATTTGCCTA+GGG | + | chr3_4:49300076-49300095 | Msa0504580:intron | 35.0% | |
CTGTATAGATATGTCGTATC+AGG | - | chr3_4:49300340-49300359 | None:intergenic | 35.0% | |
ATTACATAGCTCCCATCATA+AGG | + | chr3_4:49300463-49300482 | Msa0504580:intron | 35.0% | |
AAGCAAAGTTACTCTACATG+AGG | - | chr3_4:49300499-49300518 | None:intergenic | 35.0% | |
! | TTTTGAGCTGATATTTGGCT+TGG | + | chr3_4:49300594-49300613 | Msa0504580:intron | 35.0% |
TTAGAAGAAGAGCTGGTAAT+AGG | + | chr3_4:49300634-49300653 | Msa0504580:intron | 35.0% | |
AAACTTGAGAAACAAGGCAA+AGG | - | chr3_4:49300747-49300766 | None:intergenic | 35.0% | |
TCTAAACCTTCACCAGATTT+CGG | + | chr3_4:49300766-49300785 | Msa0504580:intron | 35.0% | |
AAGAAGAACTTACATGAGCA+AGG | - | chr3_4:49301024-49301043 | None:intergenic | 35.0% | |
!! | CTTGATGGGTCATTAAGTTT+TGG | + | chr3_4:49301079-49301098 | Msa0504580:intron | 35.0% |
ATGCTTTATCTTTCACTCTC+TGG | + | chr3_4:49301241-49301260 | Msa0504580:intron | 35.0% | |
CAGAAACAAGATTGCCTTAA+GGG | + | chr3_4:49301557-49301576 | Msa0504580:intron | 35.0% | |
ATTGCGGTTATGTTCATGAT+TGG | + | chr3_4:49301648-49301667 | Msa0504580:CDS | 35.0% | |
GATGAATGTCAATATGCACA+TGG | + | chr3_4:49301788-49301807 | Msa0504580:CDS | 35.0% | |
AGAACAACGCTTTGCAATAA+TGG | + | chr3_4:49301845-49301864 | Msa0504580:CDS | 35.0% | |
ACTGTAGTACTAATCTGAGT+CGG | - | chr3_4:49302175-49302194 | None:intergenic | 35.0% | |
TGCTAGAGATAATACTCATC+TGG | + | chr3_4:49302240-49302259 | Msa0504580:CDS | 35.0% | |
AAATAGCCTTCAAGGTTAGT+AGG | - | chr3_4:49302340-49302359 | None:intergenic | 35.0% | |
!! | CTAACCTTGAAGGCTATTTT+AGG | + | chr3_4:49302341-49302360 | Msa0504580:CDS | 35.0% |
ATGACCTAAAATAGCCTTCA+AGG | - | chr3_4:49302348-49302367 | None:intergenic | 35.0% | |
TTAGAATTGGTAAGGTGAGA+AGG | - | chr3_4:49302433-49302452 | None:intergenic | 35.0% | |
TCACCTTACCAATTCTAATG+TGG | + | chr3_4:49302435-49302454 | Msa0504580:CDS | 35.0% | |
CCGCGATAGAAAATTAGAAT+TGG | + | chr3_4:49302624-49302643 | Msa0504580:CDS | 35.0% | |
!! | TCAAATGTTGATGATCAGGA+TGG | + | chr3_4:49302682-49302701 | Msa0504580:CDS | 35.0% |
GCAGACTAGGGTATAGTATA+TGG | + | chr3_4:49299384-49299403 | Msa0504580:intron | 40.0% | |
TTGCAAGTGTTAGACATGTG+TGG | + | chr3_4:49299630-49299649 | Msa0504580:intron | 40.0% | |
!! | ATGATTCGGCATGCTACTTT+CGG | + | chr3_4:49299841-49299860 | Msa0504580:intron | 40.0% |
ATAGCTCCCATCATAAGGTA+AGG | + | chr3_4:49300468-49300487 | Msa0504580:intron | 40.0% | |
ATCTGACTTAGAAGAAGAGC+TGG | + | chr3_4:49300627-49300646 | Msa0504580:intron | 40.0% | |
AAACAAGGCAAAGGAAGAAG+TGG | - | chr3_4:49300738-49300757 | None:intergenic | 40.0% | |
GCAGAAACAAGATTGCCTTA+AGG | + | chr3_4:49301556-49301575 | Msa0504580:intron | 40.0% | |
TTTCAAAACCTGCTCCCTTA+AGG | - | chr3_4:49301574-49301593 | None:intergenic | 40.0% | |
!!! | TAAGGGAGCAGGTTTTGAAA+TGG | + | chr3_4:49301574-49301593 | Msa0504580:CDS | 40.0% |
AAATGTCCCTTTGCTCATCA+TGG | + | chr3_4:49301674-49301693 | Msa0504580:CDS | 40.0% | |
AATGTCCCTTTGCTCATCAT+GGG | + | chr3_4:49301675-49301694 | Msa0504580:CDS | 40.0% | |
AACTGGTACTAGCATTCAAC+GGG | - | chr3_4:49301925-49301944 | None:intergenic | 40.0% | |
GAACTGGTACTAGCATTCAA+CGG | - | chr3_4:49301926-49301945 | None:intergenic | 40.0% | |
!! | GTATACATTGCAGAAGCACT+TGG | - | chr3_4:49301983-49302002 | None:intergenic | 40.0% |
GCAGGATATGATATTGCAGA+CGG | - | chr3_4:49302040-49302059 | None:intergenic | 40.0% | |
TCTGCAATATCATATCCTGC+AGG | + | chr3_4:49302040-49302059 | Msa0504580:CDS | 40.0% | |
ACTGTAGTACGATTCTGAGT+CGG | - | chr3_4:49302085-49302104 | None:intergenic | 40.0% | |
GCAGTATTCAATCTGTTGCT+CGG | - | chr3_4:49302214-49302233 | None:intergenic | 40.0% | |
ATGCCGAATCCAATGATAGA+AGG | + | chr3_4:49302289-49302308 | Msa0504580:CDS | 40.0% | |
TGCCGAATCCAATGATAGAA+GGG | + | chr3_4:49302290-49302309 | Msa0504580:CDS | 40.0% | |
GACCCTTCTATCATTGGATT+CGG | - | chr3_4:49302295-49302314 | None:intergenic | 40.0% | |
CTACTTGACCCTTCTATCAT+TGG | - | chr3_4:49302301-49302320 | None:intergenic | 40.0% | |
CAATGATAGAAGGGTCAAGT+AGG | + | chr3_4:49302299-49302318 | Msa0504580:CDS | 40.0% | |
GTGAATCCTACTAACCTTGA+AGG | + | chr3_4:49302331-49302350 | Msa0504580:CDS | 40.0% | |
TGGTTAGATCACAACAGTTC+AGG | + | chr3_4:49302455-49302474 | Msa0504580:CDS | 40.0% | |
GGTTAGATCACAACAGTTCA+GGG | + | chr3_4:49302456-49302475 | Msa0504580:CDS | 40.0% | |
GTTAGATCACAACAGTTCAG+GGG | + | chr3_4:49302457-49302476 | Msa0504580:CDS | 40.0% | |
AATGCAACTGAGGTAGAATC+TGG | - | chr3_4:49302571-49302590 | None:intergenic | 40.0% | |
AGATTCTACCTCAGTTGCAT+TGG | + | chr3_4:49302570-49302589 | Msa0504580:CDS | 40.0% | |
CACTAGCAACACTTCAACAA+TGG | + | chr3_4:49302651-49302670 | Msa0504580:CDS | 40.0% | |
!! | ATAAAGACTCTAGAGCGCAG+AGG | - | chr3_4:49299264-49299283 | None:intergenic | 45.0% |
GTAGCATGCCGAATCATCAA+TGG | - | chr3_4:49299838-49299857 | None:intergenic | 45.0% | |
AGGGAAAAATTTGCCTAGGG+AGG | + | chr3_4:49300079-49300098 | Msa0504580:intron | 45.0% | |
! | ACAGAATCTAAGACCTCCCT+AGG | - | chr3_4:49300095-49300114 | None:intergenic | 45.0% |
GTGCAGCCTTACCTTATGAT+GGG | - | chr3_4:49300477-49300496 | None:intergenic | 45.0% | |
GAAACAGCCCCAAAACTTGA+AGG | - | chr3_4:49301002-49301021 | None:intergenic | 45.0% | |
ACATTCAAAGTGCGGCATTG+CGG | + | chr3_4:49301632-49301651 | Msa0504580:CDS | 45.0% | |
ATGTCCCTTTGCTCATCATG+GGG | + | chr3_4:49301676-49301695 | Msa0504580:CDS | 45.0% | |
CTTTCCCCATGATGAGCAAA+GGG | - | chr3_4:49301683-49301702 | None:intergenic | 45.0% | |
!! | AGCGTTGTTCTGTATCGACT+AGG | - | chr3_4:49301836-49301855 | None:intergenic | 45.0% |
CTTCTTTGCTCACAAACCTG+AGG | + | chr3_4:49301892-49301911 | Msa0504580:CDS | 45.0% | |
ATGTGAAGGCAAAGCAGAAC+TGG | - | chr3_4:49301942-49301961 | None:intergenic | 45.0% | |
ATCCTGCAGAAAGAACCATG+TGG | + | chr3_4:49302143-49302162 | Msa0504580:CDS | 45.0% | |
GTACTAATCTGAGTCGGAGT+CGG | - | chr3_4:49302169-49302188 | None:intergenic | 45.0% | |
CAAGATATGATGCCCTTTCG+AGG | + | chr3_4:49302497-49302516 | Msa0504580:CDS | 45.0% | |
TGCTGCTCTCGATAAAGTTC+TGG | - | chr3_4:49302528-49302547 | None:intergenic | 45.0% | |
TGAGGTAGAATCTGGAAGCT+TGG | - | chr3_4:49302563-49302582 | None:intergenic | 45.0% | |
!! | TATATATATATATATATACA+AGG | + | chr3_4:49300059-49300078 | Msa0504580:intron | 5.0% |
!! | ATATATATATATATATACAA+GGG | + | chr3_4:49300060-49300079 | Msa0504580:intron | 5.0% |
GTGTTAGACATGTGTGGCAC+TGG | + | chr3_4:49299636-49299655 | Msa0504580:intron | 50.0% | |
GGTGCAGCCTTACCTTATGA+TGG | - | chr3_4:49300478-49300497 | None:intergenic | 50.0% | |
AAGGAACCTGCACCGAAATC+TGG | - | chr3_4:49300781-49300800 | None:intergenic | 50.0% | |
CAAGATTGCCTTAAGGGAGC+AGG | + | chr3_4:49301563-49301582 | Msa0504580:CDS | 50.0% | |
GCTTTCCCCATGATGAGCAA+AGG | - | chr3_4:49301684-49301703 | None:intergenic | 50.0% | |
GCACATGGTGTTCTTGAGTC+CGG | + | chr3_4:49301803-49301822 | Msa0504580:CDS | 50.0% | |
CACATGGTGTTCTTGAGTCC+GGG | + | chr3_4:49301804-49301823 | Msa0504580:CDS | 50.0% | |
GATATTGCAGACGGTGTCCA+AGG | - | chr3_4:49302031-49302050 | None:intergenic | 50.0% | |
ATCCTGCAGGAAGAACCATG+TGG | + | chr3_4:49302053-49302072 | Msa0504580:CDS | 50.0% | |
GTACGATTCTGAGTCGGAGT+CGG | - | chr3_4:49302079-49302098 | None:intergenic | 50.0% | |
AATCTGTTGCTCGGCATCTG+AGG | - | chr3_4:49302115-49302134 | None:intergenic | 50.0% | |
AATCTGTTGCTCGGCATCTG+AGG | - | chr3_4:49302115-49302134 | None:intergenic | 50.0% | |
ACAATCTCCGACAGCAATGC+AGG | + | chr3_4:49302372-49302391 | Msa0504580:CDS | 50.0% | |
CAATCTCCGACAGCAATGCA+GGG | + | chr3_4:49302373-49302392 | Msa0504580:CDS | 50.0% | |
AATCTCCGACAGCAATGCAG+GGG | + | chr3_4:49302374-49302393 | Msa0504580:CDS | 50.0% | |
TGATACCCCTGCATTGCTGT+CGG | - | chr3_4:49302382-49302401 | None:intergenic | 50.0% | |
CTTTATCGAGAGCAGCAGCA+TGG | + | chr3_4:49302531-49302550 | Msa0504580:CDS | 50.0% | |
TGAAGGCTCCAATGCAACTG+AGG | - | chr3_4:49302581-49302600 | None:intergenic | 50.0% | |
AGGTGACTAGTGCAGCAGCT+TGG | + | chr3_4:49300654-49300673 | Msa0504580:intron | 55.0% | |
TGACTAGTGCAGCAGCTTGG+TGG | + | chr3_4:49300657-49300676 | Msa0504580:intron | 55.0% | |
GACTAGTGCAGCAGCTTGGT+GGG | + | chr3_4:49300658-49300677 | Msa0504580:intron | 55.0% | |
CCTGCACCGAAATCTGGTGA+AGG | - | chr3_4:49300775-49300794 | None:intergenic | 55.0% | |
! | CCTTCACCAGATTTCGGTGC+AGG | + | chr3_4:49300772-49300791 | Msa0504580:intron | 55.0% |
!! | GTATCGACTAGGATGCAGCC+CGG | - | chr3_4:49301825-49301844 | None:intergenic | 55.0% |
TTCAACGGGCGAAGTTCCTC+AGG | - | chr3_4:49301911-49301930 | None:intergenic | 55.0% | |
ATTGCAGACGGTGTCCAAGG+CGG | - | chr3_4:49302028-49302047 | None:intergenic | 55.0% | |
! | TGCTCGGCATCTGAGGTGTA+GGG | - | chr3_4:49302108-49302127 | None:intergenic | 55.0% |
! | TTGCTCGGCATCTGAGGTGT+AGG | - | chr3_4:49302109-49302128 | None:intergenic | 55.0% |
GGCCACATGGTTCTTTCTGC+AGG | - | chr3_4:49302148-49302167 | None:intergenic | 55.0% | |
! | TGCTCGGCATCTGAGGTGTA+GGG | - | chr3_4:49302108-49302127 | None:intergenic | 55.0% |
! | TTGCTCGGCATCTGAGGTGT+AGG | - | chr3_4:49302109-49302128 | None:intergenic | 55.0% |
GAAGGGTCAAGTAGGCTTGC+TGG | + | chr3_4:49302307-49302326 | Msa0504580:CDS | 55.0% | |
!! | GTTCTGGCTCTGCCTCGAAA+GGG | - | chr3_4:49302512-49302531 | None:intergenic | 55.0% |
!! | AGTTCTGGCTCTGCCTCGAA+AGG | - | chr3_4:49302513-49302532 | None:intergenic | 55.0% |
GAGCCTTCAACTGCCTTGTC+CGG | + | chr3_4:49302592-49302611 | Msa0504580:CDS | 55.0% | |
CAACCGGACAAGGCAGTTGA+AGG | - | chr3_4:49302598-49302617 | None:intergenic | 55.0% | |
CTTCAACTGCCTTGTCCGGT+TGG | + | chr3_4:49302596-49302615 | Msa0504580:CDS | 55.0% | |
TGCCTTCATCGATGCCGCCT+TGG | + | chr3_4:49302011-49302030 | Msa0504580:CDS | 60.0% | |
!! | GTCCAAGGCGGCATCGATGA+AGG | - | chr3_4:49302016-49302035 | None:intergenic | 60.0% |
GGCCACATGGTTCTTCCTGC+AGG | - | chr3_4:49302058-49302077 | None:intergenic | 60.0% | |
CTGAGTCGGAGTCGGCCACA+TGG | - | chr3_4:49302071-49302090 | None:intergenic | 65.0% | |
CTGAGTCGGAGTCGGCCACA+TGG | - | chr3_4:49302071-49302090 | None:intergenic | 65.0% | |
!! | TCTATCGCGGGAGCGCCAAC+CGG | - | chr3_4:49302614-49302633 | None:intergenic | 65.0% |
!! | GCGGGAGCGCCAACCGGACA+AGG | - | chr3_4:49302608-49302627 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 49299223 | 49302765 | 49299223 | ID=Msa0504580;Name=Msa0504580 |
chr3_4 | mRNA | 49299223 | 49302765 | 49299223 | ID=Msa0504580-mRNA-1;Parent=Msa0504580;Name=Msa0504580-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|0|0.5|2|0|403 |
chr3_4 | exon | 49299223 | 49299228 | 49299223 | ID=Msa0504580-mRNA-1:exon:10591;Parent=Msa0504580-mRNA-1 |
chr3_4 | exon | 49301560 | 49302765 | 49301560 | ID=Msa0504580-mRNA-1:exon:10592;Parent=Msa0504580-mRNA-1 |
chr3_4 | CDS | 49299223 | 49299228 | 49299223 | ID=Msa0504580-mRNA-1:cds;Parent=Msa0504580-mRNA-1 |
chr3_4 | CDS | 49301560 | 49302765 | 49301560 | ID=Msa0504580-mRNA-1:cds;Parent=Msa0504580-mRNA-1 |
Gene Sequence |
Protein sequence |