Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504600 | KEH34295.1 | 76.253 | 459 | 75 | 4 | 1 | 459 | 47 | 471 | 0.0 | 666 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504600 | sp|Q9LUZ4|C3H66_ARATH | 42.143 | 420 | 211 | 14 | 31 | 435 | 186 | 588 | 9.08e-85 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504600 | A0A072V7Z8 | 76.253 | 459 | 75 | 4 | 1 | 459 | 47 | 471 | 0.0 | 666 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0504600 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504600 | MtrunA17_Chr1g0187591 | 53.926 | 484 | 152 | 10 | 12 | 441 | 187 | 653 | 1.74e-143 | 426 |
| Msa0504600 | MtrunA17_Chr3g0105121 | 58.730 | 378 | 126 | 5 | 53 | 429 | 8 | 356 | 1.52e-142 | 412 |
| Msa0504600 | MtrunA17_Chr3g0105151 | 80.408 | 245 | 40 | 1 | 215 | 459 | 1 | 237 | 1.71e-138 | 397 |
| Msa0504600 | MtrunA17_Chr3g0105131 | 52.593 | 405 | 156 | 9 | 10 | 413 | 136 | 505 | 1.01e-116 | 352 |
| Msa0504600 | MtrunA17_Chr5g0430211 | 43.595 | 523 | 209 | 18 | 20 | 472 | 197 | 703 | 2.20e-107 | 334 |
| Msa0504600 | MtrunA17_Chr3g0105141 | 90.345 | 145 | 14 | 0 | 19 | 163 | 1 | 145 | 1.16e-97 | 291 |
| Msa0504600 | MtrunA17_Chr3g0105101 | 54.671 | 289 | 99 | 4 | 10 | 298 | 145 | 401 | 7.53e-92 | 284 |
| Msa0504600 | MtrunA17_Chr5g0437251 | 38.941 | 529 | 236 | 19 | 1 | 464 | 168 | 674 | 1.50e-91 | 292 |
| Msa0504600 | MtrunA17_Chr3g0113651 | 38.991 | 436 | 172 | 16 | 18 | 431 | 122 | 485 | 1.31e-72 | 238 |
| Msa0504600 | MtrunA17_Chr7g0257831 | 35.281 | 462 | 213 | 13 | 31 | 431 | 241 | 677 | 3.01e-67 | 229 |
| Msa0504600 | MtrunA17_Chr3g0088521 | 42.756 | 283 | 131 | 7 | 31 | 288 | 241 | 517 | 6.31e-64 | 220 |
| Msa0504600 | MtrunA17_Chr1g0171151 | 38.628 | 277 | 142 | 6 | 31 | 288 | 221 | 488 | 2.07e-52 | 186 |
| Msa0504600 | MtrunA17_Chr3g0092221 | 49.153 | 177 | 84 | 4 | 31 | 206 | 137 | 308 | 5.27e-50 | 175 |
| Msa0504600 | MtrunA17_Chr3g0092171 | 50.588 | 170 | 76 | 2 | 32 | 201 | 253 | 414 | 5.32e-48 | 172 |
| Msa0504600 | MtrunA17_Chr6g0487481 | 56.364 | 110 | 47 | 1 | 49 | 158 | 98 | 206 | 3.88e-42 | 154 |
| Msa0504600 | MtrunA17_Chr8g0389561 | 52.344 | 128 | 60 | 1 | 50 | 177 | 77 | 203 | 5.13e-42 | 153 |
| Msa0504600 | MtrunA17_Chr2g0324781 | 55.357 | 112 | 49 | 1 | 54 | 165 | 77 | 187 | 4.43e-41 | 151 |
| Msa0504600 | MtrunA17_Chr3g0135351 | 52.672 | 131 | 59 | 3 | 44 | 172 | 43 | 172 | 4.79e-41 | 148 |
| Msa0504600 | MtrunA17_Chr4g0040391 | 55.046 | 109 | 48 | 1 | 50 | 158 | 56 | 163 | 8.63e-39 | 143 |
| Msa0504600 | MtrunA17_Chr3g0105111 | 50.388 | 129 | 46 | 4 | 345 | 473 | 1 | 111 | 2.22e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504600 | AT5G58620.1 | 42.143 | 420 | 211 | 14 | 31 | 435 | 186 | 588 | 9.23e-86 | 275 |
| Msa0504600 | AT2G40140.2 | 37.300 | 437 | 229 | 12 | 41 | 473 | 201 | 596 | 2.77e-76 | 250 |
| Msa0504600 | AT2G40140.1 | 37.300 | 437 | 229 | 12 | 41 | 473 | 201 | 596 | 2.77e-76 | 250 |
| Msa0504600 | AT3G55980.1 | 39.599 | 399 | 184 | 16 | 41 | 431 | 198 | 547 | 5.71e-71 | 236 |
| Msa0504600 | AT3G55980.2 | 39.599 | 399 | 184 | 16 | 41 | 431 | 265 | 614 | 1.83e-70 | 236 |
| Msa0504600 | AT2G41900.1 | 45.896 | 268 | 122 | 6 | 33 | 288 | 240 | 496 | 3.77e-68 | 231 |
| Msa0504600 | AT5G12850.1 | 37.292 | 421 | 192 | 19 | 31 | 395 | 234 | 638 | 1.50e-65 | 224 |
| Msa0504600 | AT5G07500.1 | 54.918 | 122 | 54 | 1 | 36 | 157 | 34 | 154 | 8.34e-46 | 160 |
| Msa0504600 | AT2G25900.2 | 60.909 | 110 | 42 | 1 | 50 | 159 | 86 | 194 | 1.77e-44 | 158 |
| Msa0504600 | AT2G25900.1 | 60.909 | 110 | 42 | 1 | 50 | 159 | 86 | 194 | 1.77e-44 | 158 |
| Msa0504600 | AT2G19810.1 | 47.682 | 151 | 63 | 2 | 41 | 191 | 65 | 199 | 2.15e-43 | 157 |
| Msa0504600 | AT4G29190.1 | 55.556 | 117 | 51 | 1 | 43 | 159 | 68 | 183 | 5.82e-43 | 155 |
| Msa0504600 | AT1G03790.1 | 51.969 | 127 | 56 | 3 | 50 | 172 | 78 | 203 | 9.42e-40 | 148 |
| Msa0504600 | AT5G44260.1 | 54.955 | 111 | 48 | 2 | 50 | 159 | 56 | 165 | 2.70e-39 | 146 |
Find 113 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGTCCCTTTGCTCATTC+TGG | 0.150818 | 3_4:+49306458 | Msa0504600:CDS |
| CGAACAAAGCTTTGCAATAA+TGG | 0.249730 | 3_4:+49306626 | Msa0504600:CDS |
| TCATATCTTGAATTCATAAA+TGG | 0.281986 | 3_4:-49307199 | None:intergenic |
| TATATATGACAGATGAATTT+AGG | 0.289760 | 3_4:+49306378 | Msa0504600:CDS |
| ATGGAACATCGTCCGGATTA+TGG | 0.301107 | 3_4:-49307585 | None:intergenic |
| GAAGAGTCAAATAGGCTTGC+AGG | 0.316240 | 3_4:+49307022 | Msa0504600:CDS |
| CTTCTACTGCCTTCTCTGAT+TGG | 0.322323 | 3_4:+49307317 | Msa0504600:CDS |
| CATTATTAAGCCAGGAATCT+TGG | 0.322794 | 3_4:+49307482 | Msa0504600:CDS |
| CAGAACCAAGATTGCCTTAA+GGG | 0.324289 | 3_4:+49306251 | Msa0504600:intron |
| CTATTTGACTCTTCTATCAT+TGG | 0.335001 | 3_4:-49307013 | None:intergenic |
| CTATCATTGGCTTCGGCATA+TGG | 0.338840 | 3_4:-49307000 | None:intergenic |
| CTGCTCCCTTAAGGCAATCT+TGG | 0.349917 | 3_4:-49306256 | None:intergenic |
| CTTTCCGATTCAAATGTGAT+TGG | 0.358142 | 3_4:+49307154 | Msa0504600:CDS |
| CAATGATAGAAGAGTCAAAT+AGG | 0.360308 | 3_4:+49307014 | Msa0504600:CDS |
| TGATCTTTCTTCTTAGTTTG+AGG | 0.364052 | 3_4:-49306317 | None:intergenic |
| GACTCTTCTATCATTGGCTT+CGG | 0.369106 | 3_4:-49307007 | None:intergenic |
| GTGAGCTAACCCAAGATTCC+TGG | 0.390717 | 3_4:-49307492 | None:intergenic |
| TAGAGTAGCCACACAGTTCT+TGG | 0.402660 | 3_4:-49307126 | None:intergenic |
| CATTATTGCAAAGCTTTGTT+CGG | 0.408433 | 3_4:-49306625 | None:intergenic |
| ATGACCCGAAAATGTCTTCA+TGG | 0.413038 | 3_4:-49307060 | None:intergenic |
| TTCAACAGGCGAAGCTCCTC+GGG | 0.413095 | 3_4:-49306689 | None:intergenic |
| CGAGGAGCTTCGCCTGTTGA+AGG | 0.414602 | 3_4:+49306691 | Msa0504600:CDS |
| TTTCGAAACCTGCTCCCTTA+AGG | 0.416476 | 3_4:-49306265 | None:intergenic |
| AATGTCCCTTTGCTCATTCT+GGG | 0.417384 | 3_4:+49306459 | Msa0504600:CDS |
| AAAATGTCTTCATGGTTAGT+AGG | 0.419191 | 3_4:-49307052 | None:intergenic |
| ATTATTAAGCCAGGAATCTT+GGG | 0.427376 | 3_4:+49307483 | Msa0504600:CDS |
| ATGACGACATCTTATTCATT+CGG | 0.431815 | 3_4:+49307394 | Msa0504600:CDS |
| CTCATTCTGGGGAAATTGCA+AGG | 0.434253 | 3_4:+49306471 | Msa0504600:CDS |
| TGCCACATGGTTCCTCCTGC+AGG | 0.436089 | 3_4:-49306860 | None:intergenic |
| CCTACCTGACATAAAGAATA+GGG | 0.436610 | 3_4:+49306355 | Msa0504600:CDS |
| AACTGGTATAAGCCTTCAAC+AGG | 0.439127 | 3_4:-49306703 | None:intergenic |
| CCCTACCTGACATAAAGAAT+AGG | 0.442626 | 3_4:+49306354 | Msa0504600:CDS |
| CAATCAGAGAAGGCAGTAGA+AGG | 0.448046 | 3_4:-49307316 | None:intergenic |
| CAGCTGTAATAATATTTCTT+CGG | 0.448097 | 3_4:-49306503 | None:intergenic |
| TATACCCTATTCTTTATGTC+AGG | 0.458686 | 3_4:-49306359 | None:intergenic |
| TTGCTTGGCATCTGAAGTGT+GGG | 0.465030 | 3_4:-49306911 | None:intergenic |
| CAAGATTGCCTTAAGGGAGC+AGG | 0.465339 | 3_4:+49306257 | Msa0504600:CDS |
| CTTCAACAGGCGAAGCTCCT+CGG | 0.466146 | 3_4:-49306690 | None:intergenic |
| TGTTGATCAGATTCCAATGT+TGG | 0.474488 | 3_4:-49307532 | None:intergenic |
| CAGAATGGATCATGCAGTAG+AGG | 0.475417 | 3_4:+49306545 | Msa0504600:CDS |
| AGGTGAAGGAAAAGCAGAAC+TGG | 0.477528 | 3_4:-49306720 | None:intergenic |
| TATAACATGCACAATTGCTC+TGG | 0.478779 | 3_4:-49307613 | None:intergenic |
| CATTTCATTGAGTTTATCAC+CGG | 0.482092 | 3_4:-49307374 | None:intergenic |
| GAATTATTCATTATTAAGCC+AGG | 0.489175 | 3_4:+49307474 | Msa0504600:CDS |
| CAAAGTGAAGCTTTGCTCAT+GGG | 0.492005 | 3_4:+49306412 | Msa0504600:CDS |
| GGATAGGATGGAACATCGTC+CGG | 0.492237 | 3_4:-49307592 | None:intergenic |
| CCACTGATAGAAAGGTAGAT+TGG | 0.492569 | 3_4:+49307344 | Msa0504600:CDS |
| TAAGGGAGCAGGTTTCGAAA+TGG | 0.496035 | 3_4:+49306268 | Msa0504600:CDS |
| TGATCCAATCACATTTGAAT+CGG | 0.499162 | 3_4:-49307158 | None:intergenic |
| AATCTTCGTCGACACTGCCT+TGG | 0.499906 | 3_4:+49306816 | Msa0504600:CDS |
| GGTGAATTTGAATTTGATGT+AGG | 0.501254 | 3_4:-49306740 | None:intergenic |
| TCAAAGTGAAGCTTTGCTCA+TGG | 0.502823 | 3_4:+49306411 | Msa0504600:CDS |
| CACAATTGCTCTGGATAGGA+TGG | 0.503842 | 3_4:-49307604 | None:intergenic |
| AATAATATTTCTTCGGATCA+CGG | 0.506985 | 3_4:-49306496 | None:intergenic |
| TGCTTCGCTTGATAAAGCTC+TGG | 0.511329 | 3_4:-49307240 | None:intergenic |
| TCATCGATACAATCTTCAAA+AGG | 0.511992 | 3_4:+49307079 | Msa0504600:CDS |
| GCTCTGGCTCCACTTCGAAA+TGG | 0.512667 | 3_4:-49307224 | None:intergenic |
| TCAACTGCAATGCCATAATC+CGG | 0.513945 | 3_4:+49307573 | Msa0504600:CDS |
| GCAGAACCAAGATTGCCTTA+AGG | 0.516866 | 3_4:+49306250 | Msa0504600:intron |
| TATTGTCATGAATTTCAGAA+TGG | 0.523011 | 3_4:+49306530 | Msa0504600:CDS |
| CACATTTGAATCGGAAAGGT+CGG | 0.526730 | 3_4:-49307149 | None:intergenic |
| ACAATCTTCAAAAGGAATGC+TGG | 0.527301 | 3_4:+49307087 | Msa0504600:CDS |
| CCTATTCTTTATGTCAGGTA+GGG | 0.527320 | 3_4:-49306354 | None:intergenic |
| GTTGCTTGGCATCTGAAGTG+TGG | 0.528652 | 3_4:-49306912 | None:intergenic |
| TTGGTACTCCACTGATAGAA+AGG | 0.535177 | 3_4:+49307336 | Msa0504600:CDS |
| TTGGGTTAGCTCACTTGTGA+AGG | 0.535289 | 3_4:+49307501 | Msa0504600:CDS |
| TTCACCTAGTGTTTCTACAA+TGG | 0.539568 | 3_4:+49306757 | Msa0504600:CDS |
| CCCTATTCTTTATGTCAGGT+AGG | 0.552836 | 3_4:-49306355 | None:intergenic |
| ATTTCCCCAGAATGAGCAAA+GGG | 0.558937 | 3_4:-49306464 | None:intergenic |
| TCTGCAACATCATCTCCTGC+AGG | 0.561276 | 3_4:+49306845 | Msa0504600:CDS |
| AGAATGGATCATGCAGTAGA+GGG | 0.565871 | 3_4:+49306546 | Msa0504600:CDS |
| AGCTTTGTTCGGTATCGACT+AGG | 0.569025 | 3_4:-49306614 | None:intergenic |
| GATGTTGCAGACGGAGTCCA+AGG | 0.569189 | 3_4:-49306833 | None:intergenic |
| AAACATTGCTAGTATCGTCT+AGG | 0.570465 | 3_4:-49307420 | None:intergenic |
| CCAATCTACCTTTCTATCAG+TGG | 0.576349 | 3_4:-49307344 | None:intergenic |
| TTTGAATTTGATGTAGGTGA+AGG | 0.577407 | 3_4:-49306734 | None:intergenic |
| GGGATAATGCTCCTCATGAG+TGG | 0.582183 | 3_4:+49306432 | Msa0504600:CDS |
| GATTGGATCACCACAACTCA+AGG | 0.586241 | 3_4:+49307171 | Msa0504600:CDS |
| AATTCAACTGAGGTGGCAGA+AGG | 0.587216 | 3_4:-49307289 | None:intergenic |
| CATGCACAATTGCTCTGGAT+AGG | 0.592690 | 3_4:-49307608 | None:intergenic |
| AAACTAAGAAGAAAGATCAT+CGG | 0.597109 | 3_4:+49306321 | Msa0504600:CDS |
| CAATCACATTTGAATCGGAA+AGG | 0.598213 | 3_4:-49307153 | None:intergenic |
| AAGGTAGATTGGTCTATCCC+CGG | 0.610542 | 3_4:+49307355 | Msa0504600:CDS |
| GGACATTCTGTCCACTCATG+AGG | 0.613065 | 3_4:-49306443 | None:intergenic |
| ATGTCCCTTTGCTCATTCTG+GGG | 0.613840 | 3_4:+49306460 | Msa0504600:CDS |
| CTTCTTTGCTCACAAACCCG+AGG | 0.614714 | 3_4:+49306673 | Msa0504600:CDS |
| TACTAGCAATGTTTCAACAA+TGG | 0.618393 | 3_4:+49307429 | Msa0504600:CDS |
| ACTGTAGTATGAATCTGAGT+CGG | 0.620110 | 3_4:-49306887 | None:intergenic |
| AGGCTCTAATTCAACTGAGG+TGG | 0.620796 | 3_4:-49307296 | None:intergenic |
| GAATCCATTGTAGAAACACT+AGG | 0.621265 | 3_4:-49306761 | None:intergenic |
| GAAGATTGTATCAAAGAAGA+CGG | 0.623170 | 3_4:-49306800 | None:intergenic |
| GGACATGGAGCATAAGCAGA+AGG | 0.633305 | 3_4:+49304747 | None:intergenic |
| AATTTCCCCAGAATGAGCAA+AGG | 0.634761 | 3_4:-49306465 | None:intergenic |
| GCAGGAGATGATGTTGCAGA+CGG | 0.635347 | 3_4:-49306842 | None:intergenic |
| AGTGGAGTACCAATCAGAGA+AGG | 0.636735 | 3_4:-49307326 | None:intergenic |
| GAGAAGCAGAAACAACATGT+AGG | 0.638851 | 3_4:+49306290 | Msa0504600:CDS |
| GAAGGATGATGATCCAACAT+TGG | 0.647091 | 3_4:+49307519 | Msa0504600:CDS |
| CTGAGTCGGAGTCTGCCACA+TGG | 0.648294 | 3_4:-49306873 | None:intergenic |
| GATATGATGCCATTTCGAAG+TGG | 0.655473 | 3_4:+49307215 | Msa0504600:CDS |
| GCAACATCATCTCCTGCAGG+AGG | 0.663953 | 3_4:+49306848 | Msa0504600:CDS |
| CATGGAGCATAAGCAGAAGG+TGG | 0.672676 | 3_4:+49304750 | None:intergenic |
| GAATGGATCATGCAGTAGAG+GGG | 0.673342 | 3_4:+49306547 | Msa0504600:CDS |
| GTATCGACTAGGATGCAGCC+CGG | 0.674516 | 3_4:-49306603 | None:intergenic |
| ATTTCATTGAGTTTATCACC+GGG | 0.674570 | 3_4:-49307373 | None:intergenic |
| TGCTTGGCATCTGAAGTGTG+GGG | 0.675981 | 3_4:-49306910 | None:intergenic |
| CTTTATCAAGCGAAGCAGCG+TGG | 0.679886 | 3_4:+49307246 | Msa0504600:CDS |
| AAGCAGAAACAACATGTAGG+TGG | 0.688897 | 3_4:+49306293 | Msa0504600:CDS |
| AATGGATCAACCTTGAGTTG+TGG | 0.691978 | 3_4:-49307181 | None:intergenic |
| AGAAGGCTCTAATTCAACTG+AGG | 0.697808 | 3_4:-49307299 | None:intergenic |
| GATACATGTCAATATTCACA+TGG | 0.715825 | 3_4:+49306569 | Msa0504600:CDS |
| TTTCATTGAGTTTATCACCG+GGG | 0.737072 | 3_4:-49307372 | None:intergenic |
| CTCCTGCAGGAGGAACCATG+TGG | 0.747414 | 3_4:+49306858 | Msa0504600:CDS |
| AATGTGAGCCAAGAACTGTG+TGG | 0.868069 | 3_4:+49307118 | Msa0504600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATATTAAAGAAAAAAATT+CGG | - | chr3_4:49305236-49305255 | None:intergenic | 10.0% |
| !! | TCTAGATCTTAATTAAATAT+AGG | + | chr3_4:49304865-49304884 | Msa0504600:intron | 15.0% |
| !! | AAGATATAGAGAGAAAAAAA+AGG | - | chr3_4:49305004-49305023 | None:intergenic | 20.0% |
| !! | ATGTTAATACAGATTTAAGA+AGG | - | chr3_4:49305039-49305058 | None:intergenic | 20.0% |
| !! | ATTGTAATCTCAAATACTTT+AGG | - | chr3_4:49305828-49305847 | None:intergenic | 20.0% |
| !! | AAGACAATACAAACAATTAT+GGG | - | chr3_4:49306108-49306127 | None:intergenic | 20.0% |
| !! | TATATATGACAGATGAATTT+AGG | + | chr3_4:49306378-49306397 | Msa0504600:CDS | 20.0% |
| !! | TCATATCTTGAATTCATAAA+TGG | - | chr3_4:49307202-49307221 | None:intergenic | 20.0% |
| ! | TCTAATGTTAACTTTGACAT+TGG | + | chr3_4:49304779-49304798 | Msa0504600:intron | 25.0% |
| !! | GTAACATTTTGCAGAAAATA+TGG | + | chr3_4:49304887-49304906 | Msa0504600:intron | 25.0% |
| ! | TACTACAAGGATATAGTATA+TGG | + | chr3_4:49304976-49304995 | Msa0504600:intron | 25.0% |
| ! | ATCCTCAAAATGCAAAATTA+AGG | + | chr3_4:49305124-49305143 | Msa0504600:intron | 25.0% |
| !! | ATCCTTAATTTTGCATTTTG+AGG | - | chr3_4:49305129-49305148 | None:intergenic | 25.0% |
| !! | GAGGTGTATTTTGTATATAT+TGG | - | chr3_4:49305286-49305305 | None:intergenic | 25.0% |
| ! | AAGAAGAACTTACATGAATA+AGG | - | chr3_4:49305573-49305592 | None:intergenic | 25.0% |
| !! | ACTTTTCTTATTCTTCTTGA+TGG | + | chr3_4:49305769-49305788 | Msa0504600:intron | 25.0% |
| ! | CTAACAATATTAAATGCAGT+TGG | + | chr3_4:49305999-49306018 | Msa0504600:intron | 25.0% |
| ! | CAAGACAATACAAACAATTA+TGG | - | chr3_4:49306109-49306128 | None:intergenic | 25.0% |
| ! | AAACTAAGAAGAAAGATCAT+CGG | + | chr3_4:49306321-49306340 | Msa0504600:CDS | 25.0% |
| ! | AATAATATTTCTTCGGATCA+CGG | - | chr3_4:49306499-49306518 | None:intergenic | 25.0% |
| ! | CAGCTGTAATAATATTTCTT+CGG | - | chr3_4:49306506-49306525 | None:intergenic | 25.0% |
| ! | TATTGTCATGAATTTCAGAA+TGG | + | chr3_4:49306530-49306549 | Msa0504600:CDS | 25.0% |
| ! | GAATTATTCATTATTAAGCC+AGG | + | chr3_4:49307474-49307493 | Msa0504600:CDS | 25.0% |
| ! | GTGTCGATAATACAAAAGTT+AGG | + | chr3_4:49304914-49304933 | Msa0504600:intron | 30.0% |
| !! | AACAACTTGTTACTACTACA+AGG | + | chr3_4:49304963-49304982 | Msa0504600:intron | 30.0% |
| CTGTATATATATCTCGTATC+AGG | - | chr3_4:49305175-49305194 | None:intergenic | 30.0% | |
| AATCAAAGTTACTCTACATG+AGG | - | chr3_4:49305305-49305324 | None:intergenic | 30.0% | |
| ATAGAGAGAGTTAGTTGAAT+TGG | - | chr3_4:49305341-49305360 | None:intergenic | 30.0% | |
| !!! | TCTTTTGTTGTTTTACGGTT+TGG | - | chr3_4:49305473-49305492 | None:intergenic | 30.0% |
| !!! | CAGTGTCTTTTGTTGTTTTA+CGG | - | chr3_4:49305478-49305497 | None:intergenic | 30.0% |
| AAACTTGGAAAACAATGCAA+AGG | - | chr3_4:49305520-49305539 | None:intergenic | 30.0% | |
| ! | TTAGAAAAGATCGCATCTTT+TGG | - | chr3_4:49305653-49305672 | None:intergenic | 30.0% |
| CTATGAAAGTTCCTGAAAAA+GGG | + | chr3_4:49305707-49305726 | Msa0504600:intron | 30.0% | |
| ! | GAGATTACAATGTGTTTTCT+TGG | + | chr3_4:49305837-49305856 | Msa0504600:intron | 30.0% |
| TTAGATTAAGAACACAGCAA+TGG | - | chr3_4:49305983-49306002 | None:intergenic | 30.0% | |
| !! | GTTTGTATTGTCTTGCTATT+TGG | + | chr3_4:49306114-49306133 | Msa0504600:intron | 30.0% |
| TTACAAAATCATCAATCACC+AGG | - | chr3_4:49306222-49306241 | None:intergenic | 30.0% | |
| ! | TGATCTTTCTTCTTAGTTTG+AGG | - | chr3_4:49306320-49306339 | None:intergenic | 30.0% |
| TATACCCTATTCTTTATGTC+AGG | - | chr3_4:49306362-49306381 | None:intergenic | 30.0% | |
| GATACATGTCAATATTCACA+TGG | + | chr3_4:49306569-49306588 | Msa0504600:CDS | 30.0% | |
| !! | CATTATTGCAAAGCTTTGTT+CGG | - | chr3_4:49306628-49306647 | None:intergenic | 30.0% |
| TTTGAATTTGATGTAGGTGA+AGG | - | chr3_4:49306737-49306756 | None:intergenic | 30.0% | |
| GGTGAATTTGAATTTGATGT+AGG | - | chr3_4:49306743-49306762 | None:intergenic | 30.0% | |
| GAAGATTGTATCAAAGAAGA+CGG | - | chr3_4:49306803-49306822 | None:intergenic | 30.0% | |
| CTATTTGACTCTTCTATCAT+TGG | - | chr3_4:49307016-49307035 | None:intergenic | 30.0% | |
| CAATGATAGAAGAGTCAAAT+AGG | + | chr3_4:49307014-49307033 | Msa0504600:CDS | 30.0% | |
| AAAATGTCTTCATGGTTAGT+AGG | - | chr3_4:49307055-49307074 | None:intergenic | 30.0% | |
| ! | ACTAACCATGAAGACATTTT+CGG | + | chr3_4:49307055-49307074 | Msa0504600:CDS | 30.0% |
| TCATCGATACAATCTTCAAA+AGG | + | chr3_4:49307079-49307098 | Msa0504600:CDS | 30.0% | |
| TGATCCAATCACATTTGAAT+CGG | - | chr3_4:49307161-49307180 | None:intergenic | 30.0% | |
| ATTTCATTGAGTTTATCACC+GGG | - | chr3_4:49307376-49307395 | None:intergenic | 30.0% | |
| CATTTCATTGAGTTTATCAC+CGG | - | chr3_4:49307377-49307396 | None:intergenic | 30.0% | |
| ATGACGACATCTTATTCATT+CGG | + | chr3_4:49307394-49307413 | Msa0504600:CDS | 30.0% | |
| TACTAGCAATGTTTCAACAA+TGG | + | chr3_4:49307429-49307448 | Msa0504600:CDS | 30.0% | |
| ATTATTAAGCCAGGAATCTT+GGG | + | chr3_4:49307483-49307502 | Msa0504600:CDS | 30.0% | |
| CTAACTCTCTCTATGAAATC+TGG | + | chr3_4:49305347-49305366 | Msa0504600:intron | 35.0% | |
| !!! | TTTGTTGTTTTACGGTTTGG+AGG | - | chr3_4:49305470-49305489 | None:intergenic | 35.0% |
| AAACAATGCAAAGGAAGAAG+TGG | - | chr3_4:49305511-49305530 | None:intergenic | 35.0% | |
| TTGGTGAAGGTTTAGAAACT+TGG | - | chr3_4:49305535-49305554 | None:intergenic | 35.0% | |
| ! | TCTAAACCTTCACCAAGTTT+TGG | + | chr3_4:49305539-49305558 | Msa0504600:intron | 35.0% |
| ! | GAGATTGCAATGTGTTTTCT+TGG | + | chr3_4:49305681-49305700 | Msa0504600:intron | 35.0% |
| GCTATGAAAGTTCCTGAAAA+AGG | + | chr3_4:49305706-49305725 | Msa0504600:intron | 35.0% | |
| ! | CTTGATGGTTCATTGAGTTT+CGG | + | chr3_4:49305784-49305803 | Msa0504600:intron | 35.0% |
| !!! | CTCTCAAGAAACACTTTTTC+AGG | - | chr3_4:49305877-49305896 | None:intergenic | 35.0% |
| CTCTATGGAAGACAGAAAAA+AGG | + | chr3_4:49305937-49305956 | Msa0504600:intron | 35.0% | |
| ATGGAAGACAGAAAAAAGGT+TGG | + | chr3_4:49305941-49305960 | Msa0504600:intron | 35.0% | |
| ! | AATACTTGTTGCCAATTTCC+TGG | + | chr3_4:49306201-49306220 | Msa0504600:intron | 35.0% |
| ATCATCAATCACCAGGAAAT+TGG | - | chr3_4:49306215-49306234 | None:intergenic | 35.0% | |
| CCTATTCTTTATGTCAGGTA+GGG | - | chr3_4:49306357-49306376 | None:intergenic | 35.0% | |
| CCTACCTGACATAAAGAATA+GGG | + | chr3_4:49306355-49306374 | Msa0504600:CDS | 35.0% | |
| CGAACAAAGCTTTGCAATAA+TGG | + | chr3_4:49306626-49306645 | Msa0504600:CDS | 35.0% | |
| ! | TTCACCTAGTGTTTCTACAA+TGG | + | chr3_4:49306757-49306776 | Msa0504600:CDS | 35.0% |
| GAATCCATTGTAGAAACACT+AGG | - | chr3_4:49306764-49306783 | None:intergenic | 35.0% | |
| ACTGTAGTATGAATCTGAGT+CGG | - | chr3_4:49306890-49306909 | None:intergenic | 35.0% | |
| ! | CTAACCATGAAGACATTTTC+GGG | + | chr3_4:49307056-49307075 | Msa0504600:CDS | 35.0% |
| ACAATCTTCAAAAGGAATGC+TGG | + | chr3_4:49307087-49307106 | Msa0504600:CDS | 35.0% | |
| CAATCACATTTGAATCGGAA+AGG | - | chr3_4:49307156-49307175 | None:intergenic | 35.0% | |
| CTTTCCGATTCAAATGTGAT+TGG | + | chr3_4:49307154-49307173 | Msa0504600:CDS | 35.0% | |
| TTTCATTGAGTTTATCACCG+GGG | - | chr3_4:49307375-49307394 | None:intergenic | 35.0% | |
| AAACATTGCTAGTATCGTCT+AGG | - | chr3_4:49307423-49307442 | None:intergenic | 35.0% | |
| CATTATTAAGCCAGGAATCT+TGG | + | chr3_4:49307482-49307501 | Msa0504600:CDS | 35.0% | |
| TGTTGATCAGATTCCAATGT+TGG | - | chr3_4:49307535-49307554 | None:intergenic | 35.0% | |
| TATAACATGCACAATTGCTC+TGG | - | chr3_4:49307616-49307635 | None:intergenic | 35.0% | |
| AAGGAAACTGCACCAAAACT+TGG | - | chr3_4:49305554-49305573 | None:intergenic | 40.0% | |
| ! | TTCAGAACACACCCTTTTTC+AGG | - | chr3_4:49305721-49305740 | None:intergenic | 40.0% |
| GTGCTTTCTCTTTCACTCTA+TGG | + | chr3_4:49305922-49305941 | Msa0504600:intron | 40.0% | |
| !! | GTCTTGCTATTTGGATGCTA+AGG | + | chr3_4:49306123-49306142 | Msa0504600:intron | 40.0% |
| CAGAACCAAGATTGCCTTAA+GGG | + | chr3_4:49306251-49306270 | Msa0504600:intron | 40.0% | |
| GAGAAGCAGAAACAACATGT+AGG | + | chr3_4:49306290-49306309 | Msa0504600:CDS | 40.0% | |
| AAGCAGAAACAACATGTAGG+TGG | + | chr3_4:49306293-49306312 | Msa0504600:CDS | 40.0% | |
| CCCTACCTGACATAAAGAAT+AGG | + | chr3_4:49306354-49306373 | Msa0504600:CDS | 40.0% | |
| CCCTATTCTTTATGTCAGGT+AGG | - | chr3_4:49306358-49306377 | None:intergenic | 40.0% | |
| TCAAAGTGAAGCTTTGCTCA+TGG | + | chr3_4:49306411-49306430 | Msa0504600:CDS | 40.0% | |
| CAAAGTGAAGCTTTGCTCAT+GGG | + | chr3_4:49306412-49306431 | Msa0504600:CDS | 40.0% | |
| AATGTCCCTTTGCTCATTCT+GGG | + | chr3_4:49306459-49306478 | Msa0504600:CDS | 40.0% | |
| ATTTCCCCAGAATGAGCAAA+GGG | - | chr3_4:49306467-49306486 | None:intergenic | 40.0% | |
| AATTTCCCCAGAATGAGCAA+AGG | - | chr3_4:49306468-49306487 | None:intergenic | 40.0% | |
| AGAATGGATCATGCAGTAGA+GGG | + | chr3_4:49306546-49306565 | Msa0504600:CDS | 40.0% | |
| !!! | TCACATGGTGTTTTTGAGTC+CGG | + | chr3_4:49306584-49306603 | Msa0504600:CDS | 40.0% |
| AACTGGTATAAGCCTTCAAC+AGG | - | chr3_4:49306706-49306725 | None:intergenic | 40.0% | |
| ! | GCAGTTTTCAATCTGTTGCT+TGG | - | chr3_4:49306929-49306948 | None:intergenic | 40.0% |
| !! | GACTCTTCTATCATTGGCTT+CGG | - | chr3_4:49307010-49307029 | None:intergenic | 40.0% |
| ATGACCCGAAAATGTCTTCA+TGG | - | chr3_4:49307063-49307082 | None:intergenic | 40.0% | |
| CACATTTGAATCGGAAAGGT+CGG | - | chr3_4:49307152-49307171 | None:intergenic | 40.0% | |
| ! | AATGGATCAACCTTGAGTTG+TGG | - | chr3_4:49307184-49307203 | None:intergenic | 40.0% |
| ! | GATATGATGCCATTTCGAAG+TGG | + | chr3_4:49307215-49307234 | Msa0504600:CDS | 40.0% |
| ! | AGAAGGCTCTAATTCAACTG+AGG | - | chr3_4:49307302-49307321 | None:intergenic | 40.0% |
| TTGGTACTCCACTGATAGAA+AGG | + | chr3_4:49307336-49307355 | Msa0504600:CDS | 40.0% | |
| CCAATCTACCTTTCTATCAG+TGG | - | chr3_4:49307347-49307366 | None:intergenic | 40.0% | |
| CCACTGATAGAAAGGTAGAT+TGG | + | chr3_4:49307344-49307363 | Msa0504600:CDS | 40.0% | |
| GAAGGATGATGATCCAACAT+TGG | + | chr3_4:49307519-49307538 | Msa0504600:CDS | 40.0% | |
| TCAACTGCAATGCCATAATC+CGG | + | chr3_4:49307573-49307592 | Msa0504600:CDS | 40.0% | |
| ! | ACTGCACCAAAACTTGGTGA+AGG | - | chr3_4:49305548-49305567 | None:intergenic | 45.0% |
| GCAGAACCAAGATTGCCTTA+AGG | + | chr3_4:49306250-49306269 | Msa0504600:intron | 45.0% | |
| TTTCGAAACCTGCTCCCTTA+AGG | - | chr3_4:49306268-49306287 | None:intergenic | 45.0% | |
| TAAGGGAGCAGGTTTCGAAA+TGG | + | chr3_4:49306268-49306287 | Msa0504600:CDS | 45.0% | |
| GAATGTCCCTTTGCTCATTC+TGG | + | chr3_4:49306458-49306477 | Msa0504600:CDS | 45.0% | |
| ATGTCCCTTTGCTCATTCTG+GGG | + | chr3_4:49306460-49306479 | Msa0504600:CDS | 45.0% | |
| ! | CTCATTCTGGGGAAATTGCA+AGG | + | chr3_4:49306471-49306490 | Msa0504600:CDS | 45.0% |
| CAGAATGGATCATGCAGTAG+AGG | + | chr3_4:49306545-49306564 | Msa0504600:CDS | 45.0% | |
| GAATGGATCATGCAGTAGAG+GGG | + | chr3_4:49306547-49306566 | Msa0504600:CDS | 45.0% | |
| !!! | CACATGGTGTTTTTGAGTCC+GGG | + | chr3_4:49306585-49306604 | Msa0504600:CDS | 45.0% |
| !! | AGCTTTGTTCGGTATCGACT+AGG | - | chr3_4:49306617-49306636 | None:intergenic | 45.0% |
| AGGTGAAGGAAAAGCAGAAC+TGG | - | chr3_4:49306723-49306742 | None:intergenic | 45.0% | |
| ! | TTGCTTGGCATCTGAAGTGT+GGG | - | chr3_4:49306914-49306933 | None:intergenic | 45.0% |
| !! | CTATCATTGGCTTCGGCATA+TGG | - | chr3_4:49307003-49307022 | None:intergenic | 45.0% |
| GAAGAGTCAAATAGGCTTGC+AGG | + | chr3_4:49307022-49307041 | Msa0504600:CDS | 45.0% | |
| AATGTGAGCCAAGAACTGTG+TGG | + | chr3_4:49307118-49307137 | Msa0504600:CDS | 45.0% | |
| TAGAGTAGCCACACAGTTCT+TGG | - | chr3_4:49307129-49307148 | None:intergenic | 45.0% | |
| GATTGGATCACCACAACTCA+AGG | + | chr3_4:49307171-49307190 | Msa0504600:CDS | 45.0% | |
| TGCTTCGCTTGATAAAGCTC+TGG | - | chr3_4:49307243-49307262 | None:intergenic | 45.0% | |
| AATTCAACTGAGGTGGCAGA+AGG | - | chr3_4:49307292-49307311 | None:intergenic | 45.0% | |
| ! | AGGCTCTAATTCAACTGAGG+TGG | - | chr3_4:49307299-49307318 | None:intergenic | 45.0% |
| CAATCAGAGAAGGCAGTAGA+AGG | - | chr3_4:49307319-49307338 | None:intergenic | 45.0% | |
| CTTCTACTGCCTTCTCTGAT+TGG | + | chr3_4:49307317-49307336 | Msa0504600:CDS | 45.0% | |
| ! | AGTGGAGTACCAATCAGAGA+AGG | - | chr3_4:49307329-49307348 | None:intergenic | 45.0% |
| !! | AAGGTAGATTGGTCTATCCC+CGG | + | chr3_4:49307355-49307374 | Msa0504600:CDS | 45.0% |
| !! | TTGGGTTAGCTCACTTGTGA+AGG | + | chr3_4:49307501-49307520 | Msa0504600:CDS | 45.0% |
| ATGGAACATCGTCCGGATTA+TGG | - | chr3_4:49307588-49307607 | None:intergenic | 45.0% | |
| ! | CACAATTGCTCTGGATAGGA+TGG | - | chr3_4:49307607-49307626 | None:intergenic | 45.0% |
| ! | CATGCACAATTGCTCTGGAT+AGG | - | chr3_4:49307611-49307630 | None:intergenic | 45.0% |
| TGGATCCTCTGTGCATCTCT+AGG | + | chr3_4:49304799-49304818 | Msa0504600:intron | 50.0% | |
| ! | ACTAGCCTAGAGATGCACAG+AGG | - | chr3_4:49304807-49304826 | None:intergenic | 50.0% |
| CAGTGACTAGTGCAGAAGCT+CGG | + | chr3_4:49305427-49305446 | Msa0504600:intron | 50.0% | |
| CTGCTCCCTTAAGGCAATCT+TGG | - | chr3_4:49306259-49306278 | None:intergenic | 50.0% | |
| CAAGATTGCCTTAAGGGAGC+AGG | + | chr3_4:49306257-49306276 | Msa0504600:CDS | 50.0% | |
| GGGATAATGCTCCTCATGAG+TGG | + | chr3_4:49306432-49306451 | Msa0504600:CDS | 50.0% | |
| GGACATTCTGTCCACTCATG+AGG | - | chr3_4:49306446-49306465 | None:intergenic | 50.0% | |
| CTTCTTTGCTCACAAACCCG+AGG | + | chr3_4:49306673-49306692 | Msa0504600:CDS | 50.0% | |
| AATCTTCGTCGACACTGCCT+TGG | + | chr3_4:49306816-49306835 | Msa0504600:CDS | 50.0% | |
| GCAGGAGATGATGTTGCAGA+CGG | - | chr3_4:49306845-49306864 | None:intergenic | 50.0% | |
| TCTGCAACATCATCTCCTGC+AGG | + | chr3_4:49306845-49306864 | Msa0504600:CDS | 50.0% | |
| ! | TGCTTGGCATCTGAAGTGTG+GGG | - | chr3_4:49306913-49306932 | None:intergenic | 50.0% |
| ! | GTTGCTTGGCATCTGAAGTG+TGG | - | chr3_4:49306915-49306934 | None:intergenic | 50.0% |
| CTTTATCAAGCGAAGCAGCG+TGG | + | chr3_4:49307246-49307265 | Msa0504600:CDS | 50.0% | |
| GTGAGCTAACCCAAGATTCC+TGG | - | chr3_4:49307495-49307514 | None:intergenic | 50.0% | |
| GGATAGGATGGAACATCGTC+CGG | - | chr3_4:49307595-49307614 | None:intergenic | 50.0% | |
| TGACTAGTGCAGAAGCTCGG+TGG | + | chr3_4:49305430-49305449 | Msa0504600:intron | 55.0% | |
| GACTAGTGCAGAAGCTCGGT+GGG | + | chr3_4:49305431-49305450 | Msa0504600:intron | 55.0% | |
| !! | GTATCGACTAGGATGCAGCC+CGG | - | chr3_4:49306606-49306625 | None:intergenic | 55.0% |
| TTCAACAGGCGAAGCTCCTC+GGG | - | chr3_4:49306692-49306711 | None:intergenic | 55.0% | |
| CTTCAACAGGCGAAGCTCCT+CGG | - | chr3_4:49306693-49306712 | None:intergenic | 55.0% | |
| GATGTTGCAGACGGAGTCCA+AGG | - | chr3_4:49306836-49306855 | None:intergenic | 55.0% | |
| GCAACATCATCTCCTGCAGG+AGG | + | chr3_4:49306848-49306867 | Msa0504600:CDS | 55.0% | |
| ! | GCTCTGGCTCCACTTCGAAA+TGG | - | chr3_4:49307227-49307246 | None:intergenic | 55.0% |
| CGAGGAGCTTCGCCTGTTGA+AGG | + | chr3_4:49306691-49306710 | Msa0504600:CDS | 60.0% | |
| CTCCTGCAGGAGGAACCATG+TGG | + | chr3_4:49306858-49306877 | Msa0504600:CDS | 60.0% | |
| TGCCACATGGTTCCTCCTGC+AGG | - | chr3_4:49306863-49306882 | None:intergenic | 60.0% | |
| CTGAGTCGGAGTCTGCCACA+TGG | - | chr3_4:49306876-49306895 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 49304751 | 49307654 | 49304751 | ID=Msa0504600;Name=Msa0504600 |
| chr3_4 | mRNA | 49304751 | 49307654 | 49304751 | ID=Msa0504600-mRNA-1;Parent=Msa0504600;Name=Msa0504600-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|0|0|2|0|473 |
| chr3_4 | exon | 49304751 | 49304771 | 49304751 | ID=Msa0504600-mRNA-1:exon:10612;Parent=Msa0504600-mRNA-1 |
| chr3_4 | exon | 49306254 | 49307654 | 49306254 | ID=Msa0504600-mRNA-1:exon:10613;Parent=Msa0504600-mRNA-1 |
| chr3_4 | CDS | 49304751 | 49304771 | 49304751 | ID=Msa0504600-mRNA-1:cds;Parent=Msa0504600-mRNA-1 |
| chr3_4 | CDS | 49306254 | 49307654 | 49306254 | ID=Msa0504600-mRNA-1:cds;Parent=Msa0504600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
