Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0504680 | XP_013460282.1 | 92.438 | 1124 | 83 | 1 | 3 | 1126 | 2 | 1123 | 0.0 | 2127 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0504680 | sp|F4IXE7|IDM1_ARATH | 35.714 | 462 | 279 | 7 | 573 | 1020 | 575 | 1032 | 6.51e-85 | 303 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0504680 | A0A072UYY7 | 92.438 | 1124 | 83 | 1 | 3 | 1126 | 2 | 1123 | 0.0 | 2127 |
Gene ID | Type | Classification |
---|---|---|
Msa0504680 | TR | PHD |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0504680 | MtrunA17_Chr3g0105291 | 92.438 | 1124 | 83 | 1 | 3 | 1126 | 2 | 1123 | 0.0 | 2127 |
Msa0504680 | MtrunA17_Chr5g0430361 | 50.962 | 728 | 328 | 11 | 302 | 1021 | 361 | 1067 | 0.0 | 707 |
Msa0504680 | MtrunA17_Chr5g0430361 | 47.405 | 289 | 125 | 6 | 23 | 301 | 5 | 276 | 5.03e-72 | 261 |
Msa0504680 | MtrunA17_Chr5g0407211 | 41.898 | 432 | 214 | 9 | 604 | 1011 | 1 | 419 | 6.93e-109 | 347 |
Msa0504680 | MtrunA17_Chr5g0407251 | 41.435 | 432 | 216 | 9 | 604 | 1011 | 1 | 419 | 6.13e-108 | 344 |
Msa0504680 | MtrunA17_Chr7g0270101 | 42.857 | 420 | 219 | 10 | 605 | 1015 | 383 | 790 | 7.44e-105 | 348 |
Msa0504680 | MtrunA17_Chr4g0012501 | 68.000 | 250 | 65 | 4 | 3 | 237 | 2 | 251 | 1.36e-104 | 329 |
Msa0504680 | MtrunA17_Chr3g0134811 | 37.527 | 469 | 216 | 10 | 605 | 1011 | 338 | 791 | 6.55e-96 | 323 |
Msa0504680 | MtrunA17_Chr3g0134821 | 41.827 | 416 | 225 | 8 | 605 | 1011 | 425 | 832 | 8.45e-92 | 313 |
Msa0504680 | MtrunA17_Chr1g0205451 | 40.097 | 414 | 235 | 8 | 606 | 1012 | 606 | 1013 | 3.47e-84 | 301 |
Msa0504680 | MtrunA17_Chr2g0316251 | 37.010 | 408 | 252 | 5 | 606 | 1011 | 762 | 1166 | 5.78e-83 | 296 |
Msa0504680 | MtrunA17_Chr1g0185491 | 35.032 | 471 | 282 | 10 | 552 | 1012 | 765 | 1221 | 5.63e-79 | 285 |
Msa0504680 | MtrunA17_Chr7g0259981 | 32.812 | 320 | 189 | 6 | 704 | 1021 | 7 | 302 | 3.88e-57 | 200 |
Msa0504680 | MtrunA17_Chr3g0134851 | 34.112 | 428 | 185 | 9 | 608 | 1011 | 110 | 464 | 6.60e-57 | 204 |
Msa0504680 | MtrunA17_Chr7g0265211 | 27.485 | 513 | 282 | 12 | 571 | 1011 | 453 | 947 | 2.53e-43 | 171 |
Msa0504680 | MtrunA17_Chr1g0182481 | 28.132 | 423 | 240 | 10 | 617 | 994 | 472 | 875 | 1.79e-42 | 168 |
Msa0504680 | MtrunA17_Chr1g0179841 | 27.540 | 443 | 245 | 11 | 628 | 1009 | 373 | 800 | 1.30e-39 | 159 |
Msa0504680 | MtrunA17_Chr4g0055731 | 24.905 | 526 | 313 | 18 | 501 | 1011 | 11 | 469 | 9.91e-32 | 130 |
Msa0504680 | MtrunA17_Chr4g0027811 | 23.908 | 435 | 216 | 10 | 631 | 1012 | 207 | 579 | 5.08e-28 | 120 |
Msa0504680 | MtrunA17_Chr4g0028111 | 25.064 | 391 | 216 | 9 | 657 | 987 | 189 | 562 | 2.40e-27 | 119 |
Msa0504680 | MtrunA17_Chr4g0025251 | 30.651 | 261 | 154 | 9 | 772 | 1012 | 449 | 702 | 1.43e-23 | 107 |
Msa0504680 | MtrunA17_Chr2g0320451 | 32.804 | 189 | 113 | 4 | 830 | 1016 | 852 | 1028 | 4.39e-22 | 103 |
Msa0504680 | MtrunA17_Chr2g0320451 | 26.050 | 238 | 117 | 3 | 631 | 820 | 489 | 715 | 6.22e-18 | 89.7 |
Msa0504680 | MtrunA17_Chr3g0101951 | 32.394 | 142 | 90 | 4 | 16 | 153 | 394 | 533 | 3.77e-16 | 83.6 |
Msa0504680 | MtrunA17_Chr1g0192931 | 33.333 | 156 | 72 | 7 | 21 | 169 | 62 | 192 | 8.68e-13 | 68.6 |
Msa0504680 | MtrunA17_Chr1g0192961 | 31.288 | 163 | 86 | 5 | 7 | 168 | 170 | 307 | 7.06e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0504680 | AT5G58610.3 | 37.158 | 1098 | 563 | 26 | 12 | 1052 | 23 | 1050 | 0.0 | 677 |
Msa0504680 | AT5G58610.8 | 37.666 | 1054 | 535 | 23 | 12 | 1011 | 23 | 1008 | 0.0 | 672 |
Msa0504680 | AT5G58610.2 | 37.666 | 1054 | 535 | 23 | 12 | 1011 | 23 | 1008 | 0.0 | 672 |
Msa0504680 | AT5G58610.5 | 37.201 | 1086 | 555 | 26 | 24 | 1052 | 26 | 1041 | 0.0 | 670 |
Msa0504680 | AT5G58610.7 | 37.201 | 1086 | 555 | 26 | 24 | 1052 | 26 | 1041 | 0.0 | 669 |
Msa0504680 | AT5G58610.6 | 36.648 | 1086 | 535 | 29 | 24 | 1052 | 26 | 1015 | 0.0 | 638 |
Msa0504680 | AT5G58610.1 | 36.648 | 1086 | 535 | 29 | 24 | 1052 | 26 | 1015 | 0.0 | 637 |
Msa0504680 | AT5G58610.10 | 36.427 | 1002 | 515 | 23 | 12 | 959 | 23 | 956 | 0.0 | 605 |
Msa0504680 | AT5G58610.9 | 36.465 | 990 | 507 | 23 | 24 | 959 | 26 | 947 | 0.0 | 597 |
Msa0504680 | AT5G58610.11 | 35.504 | 952 | 492 | 23 | 24 | 921 | 26 | 909 | 6.56e-178 | 545 |
Msa0504680 | AT5G58610.4 | 36.614 | 762 | 389 | 16 | 314 | 1052 | 129 | 819 | 3.83e-149 | 469 |
Msa0504680 | AT1G05380.3 | 38.565 | 446 | 261 | 8 | 580 | 1017 | 494 | 934 | 5.48e-90 | 314 |
Msa0504680 | AT1G05380.1 | 38.565 | 446 | 261 | 8 | 580 | 1017 | 494 | 934 | 5.48e-90 | 314 |
Msa0504680 | AT1G05380.2 | 38.565 | 446 | 261 | 8 | 580 | 1017 | 494 | 934 | 5.48e-90 | 314 |
Msa0504680 | AT5G36740.5 | 31.395 | 602 | 358 | 17 | 456 | 1021 | 384 | 966 | 2.34e-86 | 304 |
Msa0504680 | AT5G36740.1 | 31.395 | 602 | 358 | 17 | 456 | 1021 | 384 | 966 | 2.34e-86 | 304 |
Msa0504680 | AT3G14980.3 | 35.714 | 462 | 279 | 7 | 573 | 1020 | 575 | 1032 | 2.80e-86 | 302 |
Msa0504680 | AT3G14980.5 | 35.714 | 462 | 279 | 7 | 573 | 1020 | 530 | 987 | 4.40e-86 | 303 |
Msa0504680 | AT3G14980.6 | 35.714 | 462 | 279 | 7 | 573 | 1020 | 575 | 1032 | 6.62e-86 | 303 |
Msa0504680 | AT3G14980.1 | 35.714 | 462 | 279 | 7 | 573 | 1020 | 575 | 1032 | 6.62e-86 | 303 |
Msa0504680 | AT3G14980.2 | 35.714 | 462 | 279 | 7 | 573 | 1020 | 575 | 1032 | 6.62e-86 | 303 |
Msa0504680 | AT5G36740.4 | 30.719 | 612 | 359 | 18 | 456 | 1021 | 231 | 823 | 1.09e-82 | 291 |
Msa0504680 | AT4G14920.3 | 36.222 | 450 | 277 | 7 | 579 | 1024 | 553 | 996 | 3.84e-76 | 274 |
Msa0504680 | AT4G14920.2 | 36.613 | 437 | 267 | 7 | 579 | 1011 | 553 | 983 | 8.36e-76 | 273 |
Msa0504680 | AT4G14920.1 | 36.613 | 437 | 267 | 7 | 579 | 1011 | 553 | 983 | 8.36e-76 | 273 |
Msa0504680 | AT5G36670.4 | 28.964 | 618 | 366 | 19 | 456 | 1021 | 384 | 980 | 5.13e-73 | 265 |
Msa0504680 | AT5G36670.5 | 28.964 | 618 | 366 | 19 | 456 | 1021 | 384 | 980 | 5.13e-73 | 265 |
Msa0504680 | AT5G36670.3 | 28.344 | 628 | 367 | 20 | 456 | 1021 | 231 | 837 | 2.53e-69 | 253 |
Msa0504680 | AT5G36670.2 | 30.550 | 527 | 318 | 16 | 456 | 953 | 384 | 891 | 3.99e-69 | 250 |
Msa0504680 | AT5G36740.2 | 30.550 | 527 | 318 | 16 | 456 | 953 | 384 | 891 | 3.99e-69 | 250 |
Msa0504680 | AT5G36740.3 | 30.550 | 527 | 318 | 16 | 456 | 953 | 384 | 891 | 3.99e-69 | 250 |
Msa0504680 | AT5G36670.1 | 28.344 | 628 | 367 | 20 | 456 | 1021 | 384 | 990 | 4.68e-69 | 253 |
Msa0504680 | AT5G63900.1 | 44.737 | 304 | 142 | 10 | 713 | 1011 | 258 | 540 | 8.24e-67 | 236 |
Msa0504680 | AT3G14980.4 | 33.424 | 368 | 227 | 7 | 570 | 923 | 572 | 935 | 1.03e-57 | 216 |
Msa0504680 | AT2G27980.1 | 30.088 | 452 | 236 | 11 | 642 | 1029 | 637 | 1072 | 1.12e-48 | 189 |
Msa0504680 | AT2G37520.1 | 28.670 | 436 | 229 | 11 | 633 | 1009 | 401 | 813 | 1.28e-43 | 172 |
Msa0504680 | AT3G53680.1 | 28.118 | 441 | 248 | 10 | 633 | 1021 | 418 | 841 | 6.57e-43 | 169 |
Msa0504680 | AT3G53680.2 | 28.118 | 441 | 248 | 10 | 633 | 1021 | 420 | 843 | 7.39e-43 | 169 |
Msa0504680 | AT2G36720.1 | 27.533 | 454 | 253 | 12 | 617 | 1009 | 533 | 971 | 7.00e-38 | 154 |
Msa0504680 | AT2G36720.2 | 27.533 | 454 | 253 | 12 | 617 | 1009 | 533 | 971 | 7.00e-38 | 154 |
Msa0504680 | AT5G55600.2 | 30.667 | 150 | 97 | 5 | 15 | 160 | 381 | 527 | 1.65e-11 | 68.9 |
Msa0504680 | AT5G55600.1 | 30.667 | 150 | 97 | 5 | 15 | 160 | 381 | 527 | 1.65e-11 | 68.9 |
Msa0504680 | AT5G55600.3 | 30.667 | 150 | 97 | 5 | 15 | 160 | 381 | 527 | 1.65e-11 | 68.9 |
Find 268 sgRNAs with CRISPR-Local
Find 490 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGGTCTCTTTCTTCTCTTC+TGG | 0.101871 | 3_4:-49583287 | None:intergenic |
ACACCTCTTCTTCTATTATT+TGG | 0.106047 | 3_4:-49585302 | None:intergenic |
GGGCACCGTACTGTGCTTTC+TGG | 0.111625 | 3_4:+49585740 | Msa0504680:CDS |
ATTCAGAAATCGACTATTTC+TGG | 0.151862 | 3_4:+49585398 | Msa0504680:CDS |
AACCAAGACAGAACATTTAA+AGG | 0.177176 | 3_4:-49585662 | None:intergenic |
CCAGTTGGCAAAACCGAATT+TGG | 0.185947 | 3_4:-49588387 | None:intergenic |
CACATAACTTCCGGATTTAC+TGG | 0.222960 | 3_4:-49586494 | None:intergenic |
GAAAATATTCTGAATGATAA+TGG | 0.227031 | 3_4:+49584009 | Msa0504680:CDS |
CTCTTCTTGCAGAGATTTGA+TGG | 0.228176 | 3_4:+49586940 | Msa0504680:CDS |
ACCAAGTGCCAATATCTTTC+TGG | 0.242341 | 3_4:+49585859 | Msa0504680:CDS |
CGGTGTCGGTAAGGCAAATT+TGG | 0.259207 | 3_4:+49584388 | Msa0504680:CDS |
TAATAGTAAAAGTGGATTAT+TGG | 0.263495 | 3_4:+49586847 | Msa0504680:CDS |
CATCAGAAGCTCACGCAATT+AGG | 0.270532 | 3_4:+49588195 | Msa0504680:intron |
AATTGTGATCTTTCAAAGTT+TGG | 0.278158 | 3_4:-49588294 | None:intergenic |
GGGTTTCTATTCCGTACTTC+TGG | 0.279523 | 3_4:+49587674 | Msa0504680:CDS |
TGAATGGTCAAGGTATTTAA+AGG | 0.280119 | 3_4:-49585428 | None:intergenic |
TGGAAACATCTTACATATAT+TGG | 0.282087 | 3_4:+49584867 | Msa0504680:CDS |
CATCGCTTCGGCGCTTTGGC+AGG | 0.290256 | 3_4:-49585565 | None:intergenic |
ATTTGTTCCGTTTGCCGCTT+TGG | 0.297414 | 3_4:+49585992 | Msa0504680:CDS |
GATACATGGACCGGCGCTTT+TGG | 0.305649 | 3_4:+49588258 | Msa0504680:CDS |
GCAAGAAGAGGATTCCTTTA+GGG | 0.310158 | 3_4:-49586927 | None:intergenic |
GAGAAATTTGATCTTGAGTA+TGG | 0.312348 | 3_4:+49584141 | Msa0504680:CDS |
TTCATTTCATCACCCAAATC+AGG | 0.315241 | 3_4:-49584255 | None:intergenic |
CCTGCAATCGGGCATATAAA+AGG | 0.318750 | 3_4:+49585216 | Msa0504680:CDS |
GATCTTGCATTATTTGTATC+TGG | 0.322209 | 3_4:-49585907 | None:intergenic |
AATTATAAACCCTACGCTTC+AGG | 0.323209 | 3_4:-49589853 | None:intergenic |
AGTGAGTGTTTCAAGTGTTT+TGG | 0.328028 | 3_4:+49584053 | Msa0504680:CDS |
TGAGTAAACGTGGGAGGATT+AGG | 0.333992 | 3_4:+49584094 | Msa0504680:CDS |
TGAAATGAAGGTCGGAATTC+AGG | 0.335691 | 3_4:+49584269 | Msa0504680:CDS |
AGGTCTCTTTCTTCTCTTCT+GGG | 0.340548 | 3_4:-49583286 | None:intergenic |
CGAAACCCTCCTCCATTGAT+AGG | 0.343213 | 3_4:-49583450 | None:intergenic |
TGCAAGAAGAGGATTCCTTT+AGG | 0.345444 | 3_4:-49586928 | None:intergenic |
GAGAGAGTAGGTGTCAATAA+AGG | 0.347102 | 3_4:+49583220 | Msa0504680:five_prime_UTR |
GCTTGGTAAACTTCAGAAAC+TGG | 0.348392 | 3_4:-49588549 | None:intergenic |
CCTCCTCCATTGATAGGGTT+TGG | 0.357205 | 3_4:-49583444 | None:intergenic |
TTGTCCGCACCCACTGAAAC+TGG | 0.359349 | 3_4:-49586773 | None:intergenic |
TTTCTCAGCCTTGAAACTTC+CGG | 0.360589 | 3_4:+49584539 | Msa0504680:CDS |
CTTATTGCAATGGATTCCAT+TGG | 0.361377 | 3_4:-49584940 | None:intergenic |
CACCTTCCCACCAAGCTTCC+TGG | 0.361570 | 3_4:-49584185 | None:intergenic |
GATAGACAAAAGAGAATTGT+TGG | 0.364608 | 3_4:+49588578 | Msa0504680:CDS |
AAATATTCCGTCTCCAAATT+CGG | 0.370835 | 3_4:+49588374 | Msa0504680:CDS |
CATGTTGTTACCAAGGTCTA+AGG | 0.373440 | 3_4:+49585697 | Msa0504680:CDS |
GAGTGTGACGTTTGTTTACT+TGG | 0.378154 | 3_4:+49583242 | Msa0504680:five_prime_UTR |
GAAGCGATGAATCAACTCTA+AGG | 0.378506 | 3_4:+49585579 | Msa0504680:CDS |
TGGTCAGTGTAGCAACTATT+AGG | 0.379578 | 3_4:+49587712 | Msa0504680:CDS |
GATGGACTAAGAGGCACATT+TGG | 0.383730 | 3_4:-49585071 | None:intergenic |
TCTTCGTATTTAGTTGAAAC+AGG | 0.386208 | 3_4:-49583407 | None:intergenic |
AACCACTCAAAAGTGCTCTT+TGG | 0.391170 | 3_4:+49589780 | Msa0504680:CDS |
AATGCAAGATCACAAGTCTA+AGG | 0.396731 | 3_4:+49585919 | Msa0504680:CDS |
GTGGCCAAAGCAAATTCAAC+GGG | 0.397626 | 3_4:+49586235 | Msa0504680:CDS |
GAACTTGATAATAGTAAAAG+TGG | 0.398807 | 3_4:+49586839 | Msa0504680:CDS |
ACCATCGGCCAGAAAGATAT+TGG | 0.399541 | 3_4:-49585867 | None:intergenic |
AAACTTCCGGAGATGGAATC+AGG | 0.401835 | 3_4:+49584552 | Msa0504680:CDS |
GATTAGGCCAGTGCCTCCTT+TGG | 0.402662 | 3_4:+49584110 | Msa0504680:CDS |
TCGCATATTAATGGATGAAT+TGG | 0.403985 | 3_4:+49587930 | Msa0504680:CDS |
TGGAATGTGTCGCATATTAA+TGG | 0.405995 | 3_4:+49587921 | Msa0504680:CDS |
ATTACTAGCACTACTGCTTC+CGG | 0.409786 | 3_4:-49588520 | None:intergenic |
GGCACCGTACTGTGCTTTCT+GGG | 0.413489 | 3_4:+49585741 | Msa0504680:CDS |
TTTGTCCATCGTGTCGATGC+GGG | 0.414181 | 3_4:+49586208 | Msa0504680:CDS |
ACTTAATCGAATGAATTTCC+AGG | 0.417064 | 3_4:+49587653 | Msa0504680:CDS |
AAGAGGGGTTTCTGGGATCA+TGG | 0.419147 | 3_4:+49583935 | Msa0504680:CDS |
TTCCATCTCCGGAAGTTTCA+AGG | 0.421345 | 3_4:-49584547 | None:intergenic |
TGATGGTACCCGGAAAATCT+AGG | 0.425301 | 3_4:-49588332 | None:intergenic |
TTTCTGGGATCATGGCATCC+AGG | 0.426138 | 3_4:+49583943 | Msa0504680:CDS |
TCATAAGACGTGTCTTGGTC+TGG | 0.426619 | 3_4:+49586054 | Msa0504680:CDS |
GCAGCCCTTCAAAGTCTGTT+AGG | 0.427952 | 3_4:+49586746 | Msa0504680:CDS |
CGAGTATCTCCTCTAGTTGT+GGG | 0.428093 | 3_4:+49585110 | Msa0504680:CDS |
GTCAACTATGACATCTTTGA+AGG | 0.428766 | 3_4:+49584836 | Msa0504680:CDS |
CTTCTTCTATTATTTGGAGG+TGG | 0.430595 | 3_4:-49585296 | None:intergenic |
AACCTTTAAATGTTCTGTCT+TGG | 0.434230 | 3_4:+49585660 | Msa0504680:CDS |
CCGGCTTTCCACATAACTTC+CGG | 0.435342 | 3_4:-49586503 | None:intergenic |
TCCTTCGAATTTCATGCTAC+TGG | 0.436416 | 3_4:+49585821 | Msa0504680:CDS |
TGTTGTTGATCCTCAAGAAT+TGG | 0.441102 | 3_4:-49589745 | None:intergenic |
CCTCTTCTTCTATTATTTGG+AGG | 0.441510 | 3_4:-49585299 | None:intergenic |
TCTTAGGGTCCTTGGAGATA+AGG | 0.443751 | 3_4:+49587852 | Msa0504680:intron |
AAAATATTCTGAATGATAAT+GGG | 0.444654 | 3_4:+49584010 | Msa0504680:CDS |
GAACCTGTTGTTCCTCCGGC+TGG | 0.445299 | 3_4:+49584612 | Msa0504680:CDS |
TTTCCAGCCGGAGGAACAAC+AGG | 0.446676 | 3_4:-49584615 | None:intergenic |
AGTAGAGATACCAGTAAATC+CGG | 0.447861 | 3_4:+49586484 | Msa0504680:CDS |
TTATTGCAATGGATTCCATT+GGG | 0.450609 | 3_4:-49584939 | None:intergenic |
TTTGTGGAGACACTTGATAA+TGG | 0.452655 | 3_4:+49584476 | Msa0504680:CDS |
GTTCACACTGAATGCATGTA+AGG | 0.456612 | 3_4:-49586278 | None:intergenic |
TCGTGTCGATGCGGGATTTG+TGG | 0.457604 | 3_4:+49586216 | Msa0504680:CDS |
GGACAAAACCATTCACCATC+AGG | 0.458765 | 3_4:-49586192 | None:intergenic |
AGTGGGAGCGACGAGGGAAA+TGG | 0.459932 | 3_4:+49584331 | Msa0504680:CDS |
GATTGAGGAGTTGTATCTTC+CGG | 0.460581 | 3_4:+49584368 | Msa0504680:CDS |
TCATGAGGAAAATGTTGATC+AGG | 0.461489 | 3_4:+49585448 | Msa0504680:CDS |
CACTCAAGAAGACCTGCAAT+CGG | 0.463785 | 3_4:+49585204 | Msa0504680:CDS |
CGAATAAATCAAGTGCAAAT+CGG | 0.466377 | 3_4:+49585510 | Msa0504680:CDS |
AGGTGAACTATTATCTGAAA+AGG | 0.467810 | 3_4:+49584572 | Msa0504680:CDS |
TTAGAGTTGATTCATCGCTT+CGG | 0.468082 | 3_4:-49585577 | None:intergenic |
GATTCATCGCTTCGGCGCTT+TGG | 0.468963 | 3_4:-49585569 | None:intergenic |
AGGCAAGAGGAAGACGCCTT+TGG | 0.471117 | 3_4:-49585626 | None:intergenic |
AACTCAGCCAAAGGAGGCAC+TGG | 0.471820 | 3_4:-49584117 | None:intergenic |
GAAGGCGATAATGATAATCT+TGG | 0.474333 | 3_4:+49589425 | Msa0504680:CDS |
TCAGGATTGGGATGAAGTTA+CGG | 0.474444 | 3_4:+49584305 | Msa0504680:CDS |
AGCCTTGAAACTTCCGGAGA+TGG | 0.475638 | 3_4:+49584545 | Msa0504680:CDS |
ATTGTTGGATCAACAAATGA+TGG | 0.476427 | 3_4:+49588593 | Msa0504680:CDS |
CAAAGATGTCATAGTTGACT+TGG | 0.477083 | 3_4:-49584832 | None:intergenic |
TGAATGAGATGAAGGATTTG+TGG | 0.478107 | 3_4:+49584460 | Msa0504680:CDS |
TCTGGAGAGAAATGAAGATC+TGG | 0.483681 | 3_4:+49587692 | Msa0504680:CDS |
TATTCTGAATGATAATGGGT+TGG | 0.487538 | 3_4:+49584014 | Msa0504680:CDS |
AAAAGTGCTCTTTGGTAAAG+TGG | 0.488818 | 3_4:+49589788 | Msa0504680:CDS |
ATTCTGAATGATAATGGGTT+GGG | 0.489006 | 3_4:+49584015 | Msa0504680:CDS |
ACATATTGCTTAACAGCATC+GGG | 0.489875 | 3_4:-49584795 | None:intergenic |
AGTAAACTTTCTTATTGCAA+TGG | 0.489917 | 3_4:-49584950 | None:intergenic |
AACATCTTACATATATTGGA+TGG | 0.490421 | 3_4:+49584871 | Msa0504680:CDS |
ATGACGACGATACTGAAATC+TGG | 0.490750 | 3_4:-49587899 | None:intergenic |
AATGCGGATTACTCAGGATT+GGG | 0.491002 | 3_4:+49584293 | Msa0504680:CDS |
AGTTCACCTGATTCCATCTC+CGG | 0.494011 | 3_4:-49584558 | None:intergenic |
CAAAATGATGCTTCATGCAA+AGG | 0.494050 | 3_4:+49584654 | Msa0504680:CDS |
TGTTGTTCCTCCGGCTGGAA+AGG | 0.496605 | 3_4:+49584617 | Msa0504680:CDS |
GAAAGAACCTGTTGTTCCTC+CGG | 0.496927 | 3_4:+49584608 | Msa0504680:CDS |
CAGTAAATCCGGAAGTTATG+TGG | 0.497239 | 3_4:+49586495 | Msa0504680:CDS |
GAAGCAGCTTTGATTACCAT+TGG | 0.498730 | 3_4:+49584684 | Msa0504680:CDS |
TTCGCCTCCAAAGCGGCAAA+CGG | 0.498884 | 3_4:-49585999 | None:intergenic |
TTCATTTCTCTCCAGAAGTA+CGG | 0.498951 | 3_4:-49587685 | None:intergenic |
ATGGGAAATTGACATTCTCC+AGG | 0.502334 | 3_4:+49584890 | Msa0504680:CDS |
CCTCCAAATAATAGAAGAAG+AGG | 0.505734 | 3_4:+49585299 | Msa0504680:CDS |
CATCAAATCTCTGCAAGAAG+AGG | 0.506536 | 3_4:-49586939 | None:intergenic |
GAGAAGAATTTCTGTTTCAG+TGG | 0.506628 | 3_4:-49585338 | None:intergenic |
TCACATTCAATAACTGTCCC+TGG | 0.509655 | 3_4:-49583961 | None:intergenic |
GTAGCTGAAGTACCTCTTGT+TGG | 0.510042 | 3_4:+49587874 | Msa0504680:CDS |
TTAAAGGTTTATGATGTGAA+AGG | 0.510336 | 3_4:-49585646 | None:intergenic |
AAATGCGGATTACTCAGGAT+TGG | 0.511598 | 3_4:+49584292 | Msa0504680:CDS |
GATATTGGCACTTGGTCTGA+TGG | 0.512828 | 3_4:-49585852 | None:intergenic |
GGGATGAAGTTACGGAGAAG+TGG | 0.513297 | 3_4:+49584313 | Msa0504680:CDS |
GCTGTCCTAACAGACTTTGA+AGG | 0.513374 | 3_4:-49586751 | None:intergenic |
GGAGGTAGTTGGTGATTACT+TGG | 0.514159 | 3_4:+49584497 | Msa0504680:CDS |
GAAGCTCCAAACCCTATCAA+TGG | 0.514872 | 3_4:+49583438 | Msa0504680:exon |
GCCAATATCTTTCTGGCCGA+TGG | 0.514917 | 3_4:+49585866 | Msa0504680:CDS |
CACATATTGCTTAACAGCAT+CGG | 0.516322 | 3_4:-49584796 | None:intergenic |
CGAAAACAAGATGCTATCTC+CGG | 0.516683 | 3_4:+49588501 | Msa0504680:CDS |
GTTAGGACAGCCAGTTTCAG+TGG | 0.517338 | 3_4:+49586763 | Msa0504680:CDS |
TCCAGGGTGGTAAACAATAC+AGG | 0.518289 | 3_4:+49584907 | Msa0504680:CDS |
TTCTGGGATCATGGCATCCA+GGG | 0.519201 | 3_4:+49583944 | Msa0504680:CDS |
GGTACTGAGATCAAATGAAA+GGG | 0.522206 | 3_4:+49585601 | Msa0504680:CDS |
TACCAGGAAGCTTGGTGGGA+AGG | 0.523101 | 3_4:+49584183 | Msa0504680:CDS |
TGTTCCGTTTGCCGCTTTGG+AGG | 0.523366 | 3_4:+49585995 | Msa0504680:CDS |
AGGATCTCCCTGATGGTGAA+TGG | 0.525582 | 3_4:+49586184 | Msa0504680:intron |
TCAGGAAATGCGGATTACTC+AGG | 0.525665 | 3_4:+49584287 | Msa0504680:CDS |
CCGAGTATCTCCTCTAGTTG+TGG | 0.526543 | 3_4:+49585109 | Msa0504680:CDS |
GGACGGAGAAGAGTTCATCA+TGG | 0.529822 | 3_4:-49585003 | None:intergenic |
TTACTTGGCTGTTACAGTAA+AGG | 0.531524 | 3_4:+49584512 | Msa0504680:CDS |
ACCTGTATTGTTTACCACCC+TGG | 0.532107 | 3_4:-49584908 | None:intergenic |
TGTATCTTCCGGTGTCGGTA+AGG | 0.532288 | 3_4:+49584379 | Msa0504680:CDS |
ATGTAAATTACCAGGAAGCT+TGG | 0.532737 | 3_4:+49584175 | Msa0504680:CDS |
TTCATTTGTCTCAAAACCAA+TGG | 0.532764 | 3_4:-49584700 | None:intergenic |
CTTAATCGAATGAATTTCCA+GGG | 0.533875 | 3_4:+49587654 | Msa0504680:CDS |
GGGTACTGAGATCAAATGAA+AGG | 0.534729 | 3_4:+49585600 | Msa0504680:CDS |
ATCATCTGAAAGCAGAAGGA+TGG | 0.539714 | 3_4:+49585261 | Msa0504680:CDS |
GAAACCCTCCTCCATTGATA+GGG | 0.543253 | 3_4:-49583449 | None:intergenic |
TTTGGTAAAGTGGAGTGGAC+TGG | 0.543581 | 3_4:+49589798 | Msa0504680:CDS |
ATCAAATGAAAGGGTGCCAA+AGG | 0.545984 | 3_4:+49585610 | Msa0504680:CDS |
CCGGAAGTTATGTGGAAAGC+CGG | 0.546646 | 3_4:+49586503 | Msa0504680:CDS |
CCAAACCCTATCAATGGAGG+AGG | 0.547670 | 3_4:+49583444 | Msa0504680:exon |
TCTACCACAGTGGGAACAGC+AGG | 0.548324 | 3_4:-49588237 | None:intergenic |
TTAGACGTAAGAAGGCGAAA+GGG | 0.548443 | 3_4:+49589827 | Msa0504680:CDS |
TTCCCACTGTGGTAGATACA+TGG | 0.549468 | 3_4:+49588244 | Msa0504680:CDS |
CTGGACATTGAATGAGATGA+AGG | 0.552629 | 3_4:+49584452 | Msa0504680:CDS |
CTGTGGAAAAGACTGTGAAA+AGG | 0.552748 | 3_4:+49586528 | Msa0504680:CDS |
GGAGTTGTATCTTCCGGTGT+CGG | 0.554156 | 3_4:+49584374 | Msa0504680:CDS |
CATGTATAGGATCTCCCTGA+TGG | 0.557404 | 3_4:+49586177 | Msa0504680:intron |
AAATTACCAGGAAGCTTGGT+GGG | 0.557807 | 3_4:+49584179 | Msa0504680:CDS |
AGATTTCAGTATCGTCGTCA+TGG | 0.558925 | 3_4:+49587901 | Msa0504680:CDS |
ATTTGGAACGTGACAGTCAC+CGG | 0.559065 | 3_4:-49585054 | None:intergenic |
TTCTGGCACATGATGGTACC+CGG | 0.559347 | 3_4:-49588342 | None:intergenic |
TCATTTCATCACCCAAATCA+GGG | 0.559352 | 3_4:-49584254 | None:intergenic |
AGTGTGACGTTTGTTTACTT+GGG | 0.560097 | 3_4:+49583243 | Msa0504680:five_prime_UTR |
GGTCTACTTTAGACGTAAGA+AGG | 0.562401 | 3_4:+49589819 | Msa0504680:CDS |
TCATATCATAAGACGTGTCT+TGG | 0.562434 | 3_4:+49586049 | Msa0504680:CDS |
TCTCCGTCCGAAAATAGTCT+TGG | 0.565269 | 3_4:+49585017 | Msa0504680:CDS |
CAATGTCCAGTCACCAATCA+CGG | 0.565693 | 3_4:-49584439 | None:intergenic |
GAAAGGGGAACCTGAAGCGT+AGG | 0.566056 | 3_4:+49589843 | Msa0504680:CDS |
ACTCAAGAAGACCTGCAATC+GGG | 0.566161 | 3_4:+49585205 | Msa0504680:CDS |
CAAATTTGCCTTACCGACAC+CGG | 0.566542 | 3_4:-49584387 | None:intergenic |
TGCTCTTTGGTAAAGTGGAG+TGG | 0.566618 | 3_4:+49589793 | Msa0504680:CDS |
CAAGAAGAGGATTCCTTTAG+GGG | 0.566868 | 3_4:-49586926 | None:intergenic |
CGGAGAAGTGGGAGCGACGA+GGG | 0.568858 | 3_4:+49584325 | Msa0504680:CDS |
ATTTAAAGTCAAATGATCGG+TGG | 0.569915 | 3_4:+49584739 | Msa0504680:CDS |
AAATGATAAGTGTGATGGAA+TGG | 0.570523 | 3_4:+49584212 | Msa0504680:CDS |
CTGTCCTAACAGACTTTGAA+GGG | 0.570641 | 3_4:-49586750 | None:intergenic |
TTGCAATGGATTCCATTGGG+TGG | 0.572732 | 3_4:-49584936 | None:intergenic |
TCATCTGCCACTGCAACAGA+TGG | 0.573346 | 3_4:-49585137 | None:intergenic |
TTAGGACAGCCAGTTTCAGT+GGG | 0.574149 | 3_4:+49586764 | Msa0504680:CDS |
TATGTGGAAAGCCGGTTCTG+TGG | 0.574296 | 3_4:+49586511 | Msa0504680:CDS |
ACATCTTACATATATTGGAT+GGG | 0.574348 | 3_4:+49584872 | Msa0504680:CDS |
GGAACGTGACAGTCACCGGC+AGG | 0.574813 | 3_4:-49585050 | None:intergenic |
GTTGTAAATGATAAGTGTGA+TGG | 0.578294 | 3_4:+49584207 | Msa0504680:CDS |
TAGTATTCCACAATGGCTTG+AGG | 0.579155 | 3_4:-49585173 | None:intergenic |
ATTAATGGATGAATTGGAGA+AGG | 0.579634 | 3_4:+49587936 | Msa0504680:CDS |
CTGATTTAAAGTCAAATGAT+CGG | 0.580821 | 3_4:+49584736 | Msa0504680:CDS |
AATTTGCCGTGATTGGTGAC+TGG | 0.585381 | 3_4:+49584433 | Msa0504680:CDS |
AGAAATCATCTGAAAGCAGA+AGG | 0.585694 | 3_4:+49585257 | Msa0504680:CDS |
GCCAGTAGCATGAAATTCGA+AGG | 0.587705 | 3_4:-49585822 | None:intergenic |
AAATACCTTGACCATTCATG+AGG | 0.588685 | 3_4:+49585433 | Msa0504680:CDS |
TTTAAAGTCAAATGATCGGT+GGG | 0.590490 | 3_4:+49584740 | Msa0504680:CDS |
GGCAAAACCGAATTTGGAGA+CGG | 0.590744 | 3_4:-49588381 | None:intergenic |
TTTAGACGTAAGAAGGCGAA+AGG | 0.593185 | 3_4:+49589826 | Msa0504680:CDS |
ACGTCTTATGATATGAAGAC+GGG | 0.594381 | 3_4:-49586042 | None:intergenic |
ACAGCCAGTTTCAGTGGGTG+CGG | 0.594757 | 3_4:+49586769 | Msa0504680:CDS |
TGTGGCCAAAGCAAATTCAA+CGG | 0.595171 | 3_4:+49586234 | Msa0504680:CDS |
TAAATTACCAGGAAGCTTGG+TGG | 0.595722 | 3_4:+49584178 | Msa0504680:CDS |
TCTGGGCGACTAACTCATGA+AGG | 0.595905 | 3_4:+49585758 | Msa0504680:CDS |
GCCAGAAAGATATTGGCACT+TGG | 0.596693 | 3_4:-49585860 | None:intergenic |
CTTTGAAAATCCAAAAGCGC+CGG | 0.597314 | 3_4:-49588268 | None:intergenic |
CTTGGTATAACGCATCCTGC+CGG | 0.598730 | 3_4:+49585035 | Msa0504680:CDS |
GATGCTTCATGCAAAGGTGC+TGG | 0.599853 | 3_4:+49584660 | Msa0504680:CDS |
GGATGAAGTTACGGAGAAGT+GGG | 0.600692 | 3_4:+49584314 | Msa0504680:CDS |
ATAGGCAAGTCCTTTCCAGC+CGG | 0.600857 | 3_4:-49584627 | None:intergenic |
GAAAATCAATGAAAGAGTTG+AGG | 0.603862 | 3_4:+49583501 | Msa0504680:CDS |
TACAGGTACAAGCCACCCAA+TGG | 0.603909 | 3_4:+49584924 | Msa0504680:CDS |
CACGTCTTATGATATGAAGA+CGG | 0.605602 | 3_4:-49586043 | None:intergenic |
CCACACAGTCGTTTGCGTCA+AGG | 0.607220 | 3_4:+49585956 | Msa0504680:CDS |
CACTTGATAATGGAGGTAGT+TGG | 0.609618 | 3_4:+49584486 | Msa0504680:CDS |
GTGTGTTGATGTAAATTACC+AGG | 0.611042 | 3_4:+49584167 | Msa0504680:CDS |
TGATTTGGGTGATGAAATGA+AGG | 0.612944 | 3_4:+49584257 | Msa0504680:CDS |
GGCAAGTCCTTTCCAGCCGG+AGG | 0.613261 | 3_4:-49584624 | None:intergenic |
TTGGGTGATGAAATGAAGGT+CGG | 0.615563 | 3_4:+49584261 | Msa0504680:CDS |
GGGGCTTCCATCTGTTGCAG+TGG | 0.616057 | 3_4:+49585130 | Msa0504680:CDS |
TAAGACGTGTCTTGGTCTGG+AGG | 0.616442 | 3_4:+49586057 | Msa0504680:CDS |
AGTGTGATGGAATGGAGGAG+AGG | 0.617309 | 3_4:+49584220 | Msa0504680:CDS |
GATGGAAGCCCCACAACTAG+AGG | 0.618341 | 3_4:-49585119 | None:intergenic |
AAGCGATGAATCAACTCTAA+GGG | 0.620220 | 3_4:+49585580 | Msa0504680:CDS |
TTTATGATGTGAAAGGCAAG+AGG | 0.620240 | 3_4:-49585639 | None:intergenic |
AATTTCTCAAACTCAGCCAA+AGG | 0.621558 | 3_4:-49584126 | None:intergenic |
TAGACGTAAGAAGGCGAAAG+GGG | 0.622129 | 3_4:+49589828 | Msa0504680:CDS |
GTCGCCCAGAAAGCACAGTA+CGG | 0.622172 | 3_4:-49585745 | None:intergenic |
AGATAAGAGCGATCTACCAT+CGG | 0.623826 | 3_4:-49585882 | None:intergenic |
GGCGGAGCAACCAATTCTTG+AGG | 0.625234 | 3_4:+49589735 | Msa0504680:intron |
AAGTTCACAACTCTCATAGT+CGG | 0.625767 | 3_4:-49586822 | None:intergenic |
ATCGGGTCATTGAGTAAACG+TGG | 0.626423 | 3_4:+49584084 | Msa0504680:CDS |
TGAAATCTGGTACCAACAAG+AGG | 0.629514 | 3_4:-49587886 | None:intergenic |
ATCGGAAGAGAAAACGCTTG+AGG | 0.629591 | 3_4:+49585528 | Msa0504680:CDS |
ACTGTGGTAGATACATGGAC+CGG | 0.633569 | 3_4:+49588249 | Msa0504680:CDS |
TGATAAGTGTGATGGAATGG+AGG | 0.634449 | 3_4:+49584215 | Msa0504680:CDS |
TTCTCAAACTCAGCCAAAGG+AGG | 0.637741 | 3_4:-49584123 | None:intergenic |
CCACAACTAGAGGAGATACT+CGG | 0.637983 | 3_4:-49585109 | None:intergenic |
AAACGCTTGAGGAATTCAGA+TGG | 0.640084 | 3_4:+49585539 | Msa0504680:CDS |
GAAGTACGGAATAGAAACCC+TGG | 0.641639 | 3_4:-49587671 | None:intergenic |
CTTCAGCTACCTTATCTCCA+AGG | 0.642106 | 3_4:-49587861 | None:intergenic |
TTATTGTCCTCAAGCCATTG+TGG | 0.643240 | 3_4:+49585166 | Msa0504680:CDS |
GAAGCTCACGCAATTAGGAG+TGG | 0.643595 | 3_4:+49588200 | Msa0504680:intron |
GTGGAGACACTTGATAATGG+AGG | 0.645022 | 3_4:+49584479 | Msa0504680:CDS |
AAAGGGGAACCTGAAGCGTA+GGG | 0.646182 | 3_4:+49589844 | Msa0504680:CDS |
GCAAGATCACAAGTCTAAGG+AGG | 0.646340 | 3_4:+49585922 | Msa0504680:CDS |
CCTTGACGCAAACGACTGTG+TGG | 0.650813 | 3_4:-49585956 | None:intergenic |
TGTTATTGACTGTGTCACCA+TGG | 0.651442 | 3_4:+49589454 | Msa0504680:CDS |
GAGTATCTCCTCTAGTTGTG+GGG | 0.652442 | 3_4:+49585111 | Msa0504680:CDS |
ACGGAGAAGTGGGAGCGACG+AGG | 0.653217 | 3_4:+49584324 | Msa0504680:CDS |
GTCCATGTATCTACCACAGT+GGG | 0.654636 | 3_4:-49588246 | None:intergenic |
CAAATCCCGCATCGACACGA+TGG | 0.657565 | 3_4:-49586213 | None:intergenic |
ACAGCAACATGTTGTTACCA+AGG | 0.659467 | 3_4:+49585690 | Msa0504680:CDS |
TGGGAAATTGACATTCTCCA+GGG | 0.667258 | 3_4:+49584891 | Msa0504680:CDS |
GCTCCAAACCCTATCAATGG+AGG | 0.667765 | 3_4:+49583441 | Msa0504680:exon |
GACAAAACCATTCACCATCA+GGG | 0.668378 | 3_4:-49586191 | None:intergenic |
AGGTCGGAATTCAGGAAATG+CGG | 0.672442 | 3_4:+49584277 | Msa0504680:CDS |
TTTACCTGCTGTTCCCACTG+TGG | 0.676231 | 3_4:+49588233 | Msa0504680:CDS |
TGGGTGCGGACAATCTAACA+TGG | 0.678752 | 3_4:+49586783 | Msa0504680:CDS |
AAAGAAGTTCGCCTCCAAAG+CGG | 0.687855 | 3_4:-49586006 | None:intergenic |
CAAACCCTATCAATGGAGGA+GGG | 0.690346 | 3_4:+49583445 | Msa0504680:exon |
GGTCATTGAGTAAACGTGGG+AGG | 0.693475 | 3_4:+49584088 | Msa0504680:CDS |
TCGGGTCATTGAGTAAACGT+GGG | 0.701785 | 3_4:+49584085 | Msa0504680:CDS |
ATGCTTGTAGTATTCCACAA+TGG | 0.704095 | 3_4:-49585180 | None:intergenic |
TGGCCAAAGCAAATTCAACG+GGG | 0.732386 | 3_4:+49586236 | Msa0504680:CDS |
GGCCAAAGCAAATTCAACGG+GGG | 0.743810 | 3_4:+49586237 | Msa0504680:CDS |
GGTCCATGTATCTACCACAG+TGG | 0.749610 | 3_4:-49588247 | None:intergenic |
GAAATTGACATTCTCCAGGG+TGG | 0.752945 | 3_4:+49584894 | Msa0504680:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTGATTTTTTTTTTGT+GGG | + | chr3_4:49583566-49583585 | Msa0504680:intron | 10.0% |
!!! | ATTTTTATGTTTATTTTGAT+GGG | + | chr3_4:49583637-49583656 | Msa0504680:intron | 10.0% |
!!! | AATTTGAATTTTTAATTTTC+AGG | + | chr3_4:49583900-49583919 | Msa0504680:intron | 10.0% |
!! | AACATATAACAAAATATAAA+AGG | - | chr3_4:49587038-49587057 | None:intergenic | 10.0% |
!! | TAAATTGTATAAATGTTTAT+AGG | - | chr3_4:49587538-49587557 | None:intergenic | 10.0% |
!! | AAACAAAAAAGAGAAAAATA+AGG | - | chr3_4:49583341-49583360 | None:intergenic | 15.0% |
!!! | GTTTTTTGATTTTTTTTTTG+TGG | + | chr3_4:49583565-49583584 | Msa0504680:intron | 15.0% |
!!! | GATTTTTATGTTTATTTTGA+TGG | + | chr3_4:49583636-49583655 | Msa0504680:intron | 15.0% |
!! | AAAATATTCTGAATGATAAT+GGG | + | chr3_4:49584010-49584029 | Msa0504680:CDS | 15.0% |
!!! | TTTGTTATATGTTCATAATA+AGG | + | chr3_4:49587045-49587064 | Msa0504680:intron | 15.0% |
!! | TTGTTATATGTTCATAATAA+GGG | + | chr3_4:49587046-49587065 | Msa0504680:intron | 15.0% |
!! | AAACAAAATAACAGAAAAAA+GGG | - | chr3_4:49587242-49587261 | None:intergenic | 15.0% |
!! | AAAACAAAATAACAGAAAAA+AGG | - | chr3_4:49587243-49587262 | None:intergenic | 15.0% |
!! | AAACAAAATAACAGAAAAAA+GGG | - | chr3_4:49587242-49587261 | None:intergenic | 15.0% |
!!! | TTAACTATTTCATTTTTCTT+AGG | + | chr3_4:49587836-49587855 | Msa0504680:intron | 15.0% |
!!! | TAACTATTTCATTTTTCTTA+GGG | + | chr3_4:49587837-49587856 | Msa0504680:intron | 15.0% |
!! | TATGATGATAAAAATGAAAA+GGG | - | chr3_4:49588014-49588033 | None:intergenic | 15.0% |
!! | TTATGATGATAAAAATGAAA+AGG | - | chr3_4:49588015-49588034 | None:intergenic | 15.0% |
!!! | AATATATGTGATTTGTATAT+TGG | + | chr3_4:49588033-49588052 | Msa0504680:intron | 15.0% |
!! | ATTATATTAGTGTATATTAG+TGG | - | chr3_4:49588165-49588184 | None:intergenic | 15.0% |
!! | AATATATCTTGTAATCTATT+TGG | + | chr3_4:49588895-49588914 | Msa0504680:intron | 15.0% |
!!! | TTGTTGTTTTTGATTTGATA+AGG | - | chr3_4:49583309-49583328 | None:intergenic | 20.0% |
!!! | TGGTTCTTGATTTTTTTTTA+TGG | + | chr3_4:49583542-49583561 | Msa0504680:intron | 20.0% |
!!! | GGTTCTTGATTTTTTTTTAT+GGG | + | chr3_4:49583543-49583562 | Msa0504680:intron | 20.0% |
!!! | GATTGAATTTTTATTAGTGT+TGG | + | chr3_4:49583838-49583857 | Msa0504680:intron | 20.0% |
!!! | ATTTGAAGTTTTTTGTGTTA+TGG | + | chr3_4:49583868-49583887 | Msa0504680:intron | 20.0% |
!!! | TTTGAAGTTTTTTGTGTTAT+GGG | + | chr3_4:49583869-49583888 | Msa0504680:intron | 20.0% |
!! | GAAAATATTCTGAATGATAA+TGG | + | chr3_4:49584009-49584028 | Msa0504680:CDS | 20.0% |
!! | GAAAAATGAAATCCAATTAT+CGG | - | chr3_4:49586158-49586177 | None:intergenic | 20.0% |
!! | AAAATGACATACAGAAATAT+TGG | - | chr3_4:49586589-49586608 | None:intergenic | 20.0% |
!!! | TAATAGTAAAAGTGGATTAT+TGG | + | chr3_4:49586847-49586866 | Msa0504680:CDS | 20.0% |
!! | TGTTATATGTTCATAATAAG+GGG | + | chr3_4:49587047-49587066 | Msa0504680:intron | 20.0% |
!! | GAAACAAAATAACAGAAAAA+AGG | - | chr3_4:49587293-49587312 | None:intergenic | 20.0% |
!!! | AACAGATTTTGTTTGTTTAT+TGG | + | chr3_4:49587314-49587333 | Msa0504680:intron | 20.0% |
!! | GGTTGAAATTTCAAAATATA+TGG | - | chr3_4:49587367-49587386 | None:intergenic | 20.0% |
!!! | AAAATTTTCATAGTTCTGAT+AGG | + | chr3_4:49587436-49587455 | Msa0504680:intron | 20.0% |
!!! | TTTAAAATAATCGACAAATG+TGG | + | chr3_4:49587502-49587521 | Msa0504680:intron | 20.0% |
!! | ACATTTATACAATTTACCAA+TGG | + | chr3_4:49587542-49587561 | Msa0504680:intron | 20.0% |
!! | AATGAAATAGTTAATCAAGA+CGG | - | chr3_4:49587830-49587849 | None:intergenic | 20.0% |
!! | ATGATGATAAAAATGAAAAG+GGG | - | chr3_4:49588013-49588032 | None:intergenic | 20.0% |
!!! | TTATTTTTATCAAACTTTCC+TGG | + | chr3_4:49588082-49588101 | Msa0504680:intron | 20.0% |
!! | TTTAATCCTTACAAAAATGA+TGG | + | chr3_4:49588637-49588656 | Msa0504680:intron | 20.0% |
!! | TAAATAATTTCATGAAGATG+TGG | + | chr3_4:49588790-49588809 | Msa0504680:intron | 20.0% |
!!! | GTTTTTTTTTTCATCTTTAG+TGG | + | chr3_4:49589317-49589336 | Msa0504680:intron | 20.0% |
!! | AAGAAATGACATAATATACA+AGG | - | chr3_4:49589680-49589699 | None:intergenic | 20.0% |
!!! | TGATAATTTGATTGGTTTAT+AGG | + | chr3_4:49589714-49589733 | Msa0504680:intron | 20.0% |
!! | GTTTTATACGAAAGGATTAT+AGG | - | chr3_4:49583366-49583385 | None:intergenic | 25.0% |
!!! | TGTTTATTTTGATGGGTTTA+TGG | + | chr3_4:49583644-49583663 | Msa0504680:intron | 25.0% |
!!! | GTTTATTTTGATGGGTTTAT+GGG | + | chr3_4:49583645-49583664 | Msa0504680:intron | 25.0% |
!!! | ATGCAAAGTTTTTGTTTTGA+TGG | + | chr3_4:49583680-49583699 | Msa0504680:intron | 25.0% |
!!! | TGCAAAGTTTTTGTTTTGAT+GGG | + | chr3_4:49583681-49583700 | Msa0504680:intron | 25.0% |
!!! | TTTTTGTTTTGATGGGTTTA+TGG | + | chr3_4:49583688-49583707 | Msa0504680:intron | 25.0% |
!!! | TTTTGTTTTGATGGGTTTAT+GGG | + | chr3_4:49583689-49583708 | Msa0504680:intron | 25.0% |
!! | CTGATTTAAAGTCAAATGAT+CGG | + | chr3_4:49584736-49584755 | Msa0504680:CDS | 25.0% |
! | TGGAAACATCTTACATATAT+TGG | + | chr3_4:49584867-49584886 | Msa0504680:CDS | 25.0% |
! | AACATCTTACATATATTGGA+TGG | + | chr3_4:49584871-49584890 | Msa0504680:CDS | 25.0% |
! | ACATCTTACATATATTGGAT+GGG | + | chr3_4:49584872-49584891 | Msa0504680:CDS | 25.0% |
! | AGTAAACTTTCTTATTGCAA+TGG | - | chr3_4:49584953-49584972 | None:intergenic | 25.0% |
! | TTAAAGGTTTATGATGTGAA+AGG | - | chr3_4:49585649-49585668 | None:intergenic | 25.0% |
!!! | GGATTTCATTTTTCATGTAT+AGG | + | chr3_4:49586164-49586183 | Msa0504680:intron | 25.0% |
!! | GAACTTGATAATAGTAAAAG+TGG | + | chr3_4:49586839-49586858 | Msa0504680:CDS | 25.0% |
!!! | AAAATGTTTTATTCAGTCGA+TGG | + | chr3_4:49586963-49586982 | Msa0504680:CDS | 25.0% |
! | TATCCATCAAAATATGTTCA+TGG | + | chr3_4:49586997-49587016 | Msa0504680:intron | 25.0% |
! | TTAGCAGATATGATATCATT+AGG | - | chr3_4:49587388-49587407 | None:intergenic | 25.0% |
! | TATTGTTATCATGAAGAAGT+AGG | + | chr3_4:49587741-49587760 | Msa0504680:intron | 25.0% |
! | TGATGATAAAAATGAAAAGG+GGG | - | chr3_4:49588012-49588031 | None:intergenic | 25.0% |
!!! | ATTCCTTTTCAATTTTTTCC+TGG | + | chr3_4:49588117-49588136 | Msa0504680:intron | 25.0% |
!!! | AATTTTTTCCTGGCTTTTTA+TGG | + | chr3_4:49588127-49588146 | Msa0504680:intron | 25.0% |
! | AATTGTGATCTTTCAAAGTT+TGG | - | chr3_4:49588297-49588316 | None:intergenic | 25.0% |
!! | GAATATTTGCTAAAAACTTC+TGG | - | chr3_4:49588362-49588381 | None:intergenic | 25.0% |
! | TATGTAATTTGATTGCCTAT+AGG | + | chr3_4:49588410-49588429 | Msa0504680:intron | 25.0% |
!! | GTAATTGAAGTTAATTTTCC+TGG | + | chr3_4:49588837-49588856 | Msa0504680:intron | 25.0% |
! | TATCTTATAAAAGAACTACC+AGG | - | chr3_4:49588858-49588877 | None:intergenic | 25.0% |
! | ATCATTGCTGAAAGTAAAAA+TGG | + | chr3_4:49589125-49589144 | Msa0504680:intron | 25.0% |
!!! | TAATTTGATTGGTTTATAGG+CGG | + | chr3_4:49589717-49589736 | Msa0504680:intron | 25.0% |
!! | CAATGTAGGTTTTATACGAA+AGG | - | chr3_4:49583374-49583393 | None:intergenic | 30.0% |
!! | GTTTTGTTACTGAACAATGT+AGG | - | chr3_4:49583388-49583407 | None:intergenic | 30.0% |
TCTTCGTATTTAGTTGAAAC+AGG | - | chr3_4:49583410-49583429 | None:intergenic | 30.0% | |
GAAAATCAATGAAAGAGTTG+AGG | + | chr3_4:49583501-49583520 | Msa0504680:CDS | 30.0% | |
TGACTGTTATGATGTTGAAA+AGG | + | chr3_4:49583610-49583629 | Msa0504680:intron | 30.0% | |
! | AGGTTTTTGATCACTTGTTT+AGG | + | chr3_4:49583732-49583751 | Msa0504680:intron | 30.0% |
! | GGTTTTTGATCACTTGTTTA+GGG | + | chr3_4:49583733-49583752 | Msa0504680:intron | 30.0% |
TTAGGGAAAGAAATTGTATC+AGG | + | chr3_4:49583750-49583769 | Msa0504680:intron | 30.0% | |
!! | TATTCTGAATGATAATGGGT+TGG | + | chr3_4:49584014-49584033 | Msa0504680:CDS | 30.0% |
!! | ATTCTGAATGATAATGGGTT+GGG | + | chr3_4:49584015-49584034 | Msa0504680:CDS | 30.0% |
GAGAAATTTGATCTTGAGTA+TGG | + | chr3_4:49584141-49584160 | Msa0504680:CDS | 30.0% | |
GTTGTAAATGATAAGTGTGA+TGG | + | chr3_4:49584207-49584226 | Msa0504680:CDS | 30.0% | |
! | AAATGATAAGTGTGATGGAA+TGG | + | chr3_4:49584212-49584231 | Msa0504680:CDS | 30.0% |
!!! | GTTGCTTTTTGAATTGATTG+AGG | + | chr3_4:49584353-49584372 | Msa0504680:CDS | 30.0% |
GTATGATGTACGACAAAAAA+AGG | + | chr3_4:49584410-49584429 | Msa0504680:CDS | 30.0% | |
AGGTGAACTATTATCTGAAA+AGG | + | chr3_4:49584572-49584591 | Msa0504680:CDS | 30.0% | |
!!! | GAAGCATCATTTTGAAACAT+AGG | - | chr3_4:49584648-49584667 | None:intergenic | 30.0% |
TTCATTTGTCTCAAAACCAA+TGG | - | chr3_4:49584703-49584722 | None:intergenic | 30.0% | |
! | ATTTAAAGTCAAATGATCGG+TGG | + | chr3_4:49584739-49584758 | Msa0504680:CDS | 30.0% |
! | TTTAAAGTCAAATGATCGGT+GGG | + | chr3_4:49584740-49584759 | Msa0504680:CDS | 30.0% |
! | CATCTTTGAAGGAAAAAGTA+TGG | + | chr3_4:49584847-49584866 | Msa0504680:CDS | 30.0% |
! | TTATTGCAATGGATTCCATT+GGG | - | chr3_4:49584942-49584961 | None:intergenic | 30.0% |
! | CGTTATACCAAGACTATTTT+CGG | - | chr3_4:49585027-49585046 | None:intergenic | 30.0% |
ACACCTCTTCTTCTATTATT+TGG | - | chr3_4:49585305-49585324 | None:intergenic | 30.0% | |
ATTCAGAAATCGACTATTTC+TGG | + | chr3_4:49585398-49585417 | Msa0504680:CDS | 30.0% | |
! | TGAATGGTCAAGGTATTTAA+AGG | - | chr3_4:49585431-49585450 | None:intergenic | 30.0% |
! | ATCAACATTTTCCTCATGAA+TGG | - | chr3_4:49585447-49585466 | None:intergenic | 30.0% |
CGAATAAATCAAGTGCAAAT+CGG | + | chr3_4:49585510-49585529 | Msa0504680:CDS | 30.0% | |
AACCTTTAAATGTTCTGTCT+TGG | + | chr3_4:49585660-49585679 | Msa0504680:CDS | 30.0% | |
AACCAAGACAGAACATTTAA+AGG | - | chr3_4:49585665-49585684 | None:intergenic | 30.0% | |
GATCTTGCATTATTTGTATC+TGG | - | chr3_4:49585910-49585929 | None:intergenic | 30.0% | |
ATGAAAGCGGATATATGTAT+CGG | - | chr3_4:49586319-49586338 | None:intergenic | 30.0% | |
TTGATTCAGCAATATGAAAG+CGG | - | chr3_4:49586332-49586351 | None:intergenic | 30.0% | |
ATCAAAATCAAAAGATGTCC+AGG | - | chr3_4:49586375-49586394 | None:intergenic | 30.0% | |
TGGCTAAACTCAATAAACAA+GGG | - | chr3_4:49586569-49586588 | None:intergenic | 30.0% | |
TTGGCTAAACTCAATAAACA+AGG | - | chr3_4:49586570-49586589 | None:intergenic | 30.0% | |
!! | ACACCATGAACATATTTTGA+TGG | - | chr3_4:49587003-49587022 | None:intergenic | 30.0% |
!!! | TTACCCAGTTTTTTACACAA+AGG | - | chr3_4:49587142-49587161 | None:intergenic | 30.0% |
TTTGTGTAAAAAACTGGGTA+AGG | + | chr3_4:49587141-49587160 | Msa0504680:intron | 30.0% | |
AAAGACAGCTATAAATCCAT+TGG | - | chr3_4:49587561-49587580 | None:intergenic | 30.0% | |
AGTTCATAAACACAGATATC+AGG | - | chr3_4:49587621-49587640 | None:intergenic | 30.0% | |
ACTTAATCGAATGAATTTCC+AGG | + | chr3_4:49587653-49587672 | Msa0504680:CDS | 30.0% | |
CTTAATCGAATGAATTTCCA+GGG | + | chr3_4:49587654-49587673 | Msa0504680:CDS | 30.0% | |
! | GTTTTTAATGCCTTCTGTAA+TGG | + | chr3_4:49587804-49587823 | Msa0504680:intron | 30.0% |
! | TCGCATATTAATGGATGAAT+TGG | + | chr3_4:49587930-49587949 | Msa0504680:CDS | 30.0% |
! | ATTAATGGATGAATTGGAGA+AGG | + | chr3_4:49587936-49587955 | Msa0504680:CDS | 30.0% |
! | AGGAATTTTCTAATCAAACC+AGG | - | chr3_4:49588103-49588122 | None:intergenic | 30.0% |
AAGCCAGGAAAAAATTGAAA+AGG | - | chr3_4:49588123-49588142 | None:intergenic | 30.0% | |
AAAAAGAACCATAAAAAGCC+AGG | - | chr3_4:49588138-49588157 | None:intergenic | 30.0% | |
! | CTATACTTTCCTAGATTTTC+CGG | + | chr3_4:49588323-49588342 | Msa0504680:CDS | 30.0% |
! | TATACTTTCCTAGATTTTCC+GGG | + | chr3_4:49588324-49588343 | Msa0504680:CDS | 30.0% |
AAATATTCCGTCTCCAAATT+CGG | + | chr3_4:49588374-49588393 | Msa0504680:CDS | 30.0% | |
CAATCAAATTACATACCAGT+TGG | - | chr3_4:49588405-49588424 | None:intergenic | 30.0% | |
GATAGACAAAAGAGAATTGT+TGG | + | chr3_4:49588578-49588597 | Msa0504680:CDS | 30.0% | |
ATTGTTGGATCAACAAATGA+TGG | + | chr3_4:49588593-49588612 | Msa0504680:CDS | 30.0% | |
TGTAAGGATTAAATAGACAG+AGG | - | chr3_4:49588630-49588649 | None:intergenic | 30.0% | |
!! | TTAACGCCATCATTTTTGTA+AGG | - | chr3_4:49588646-49588665 | None:intergenic | 30.0% |
GAATCCATAACAGAAATAGA+TGG | - | chr3_4:49588983-49589002 | None:intergenic | 30.0% | |
TGCTGAAAGTAAAAATGGAA+AGG | + | chr3_4:49589130-49589149 | Msa0504680:intron | 30.0% | |
CTGACACGAATAATGATTTA+TGG | + | chr3_4:49589215-49589234 | Msa0504680:intron | 30.0% | |
! | TACATTGCTTAGACGATTTT+TGG | + | chr3_4:49589351-49589370 | Msa0504680:intron | 30.0% |
!! | AGAAGTACTGCAAAAATATC+AGG | - | chr3_4:49589405-49589424 | None:intergenic | 30.0% |
!! | TATTTTTGCAGTACTTCTGA+AGG | + | chr3_4:49589407-49589426 | Msa0504680:intron | 30.0% |
AGAACAAGATGAAAATACCA+TGG | - | chr3_4:49589474-49589493 | None:intergenic | 30.0% | |
AAGTAGAAAGCAAATTGTGA+AGG | - | chr3_4:49589653-49589672 | None:intergenic | 30.0% | |
GATGAGACTGATAATTTGAT+TGG | + | chr3_4:49589706-49589725 | Msa0504680:intron | 30.0% | |
AGTGTGACGTTTGTTTACTT+GGG | + | chr3_4:49583243-49583262 | Msa0504680:five_prime_UTR | 35.0% | |
GGTAATGTCGATATTCTTTC+TGG | + | chr3_4:49583522-49583541 | Msa0504680:intron | 35.0% | |
!!! | TGATGGGTTTATGGGTTTTT+AGG | + | chr3_4:49583653-49583672 | Msa0504680:intron | 35.0% |
!! | GATGGGTTTATGGGTTTTTA+GGG | + | chr3_4:49583654-49583673 | Msa0504680:intron | 35.0% |
!! | TGATGGGTTTATGGGAATTT+AGG | + | chr3_4:49583697-49583716 | Msa0504680:intron | 35.0% |
! | GATGGGTTTATGGGAATTTA+GGG | + | chr3_4:49583698-49583717 | Msa0504680:intron | 35.0% |
! | AATTTAGGGTTCTTGCAATG+AGG | + | chr3_4:49583712-49583731 | Msa0504680:intron | 35.0% |
! | ATTATTGATTGTTGGCAGCT+GGG | + | chr3_4:49583814-49583833 | Msa0504680:intron | 35.0% |
!!! | TAATGGGTTGGGTAATTTTG+TGG | + | chr3_4:49584026-49584045 | Msa0504680:CDS | 35.0% |
!! | AGTGAGTGTTTCAAGTGTTT+TGG | + | chr3_4:49584053-49584072 | Msa0504680:CDS | 35.0% |
!! | AGTGTTTCAAGTGTTTTGGA+TGG | + | chr3_4:49584057-49584076 | Msa0504680:CDS | 35.0% |
!! | AGTGTTTTGGATGGTGATAT+CGG | + | chr3_4:49584066-49584085 | Msa0504680:CDS | 35.0% |
AATTTCTCAAACTCAGCCAA+AGG | - | chr3_4:49584129-49584148 | None:intergenic | 35.0% | |
! | GTGTGTTGATGTAAATTACC+AGG | + | chr3_4:49584167-49584186 | Msa0504680:CDS | 35.0% |
ATGTAAATTACCAGGAAGCT+TGG | + | chr3_4:49584175-49584194 | Msa0504680:CDS | 35.0% | |
! | ACTGTGTTTTTCCCTGATTT+GGG | + | chr3_4:49584243-49584262 | Msa0504680:CDS | 35.0% |
TCATTTCATCACCCAAATCA+GGG | - | chr3_4:49584257-49584276 | None:intergenic | 35.0% | |
TTCATTTCATCACCCAAATC+AGG | - | chr3_4:49584258-49584277 | None:intergenic | 35.0% | |
! | TGATTTGGGTGATGAAATGA+AGG | + | chr3_4:49584257-49584276 | Msa0504680:CDS | 35.0% |
AAAAAGGAATTTGCCGTGAT+TGG | + | chr3_4:49584426-49584445 | Msa0504680:CDS | 35.0% | |
TGAATGAGATGAAGGATTTG+TGG | + | chr3_4:49584460-49584479 | Msa0504680:CDS | 35.0% | |
TTTGTGGAGACACTTGATAA+TGG | + | chr3_4:49584476-49584495 | Msa0504680:CDS | 35.0% | |
TTACTTGGCTGTTACAGTAA+AGG | + | chr3_4:49584512-49584531 | Msa0504680:CDS | 35.0% | |
CAAAATGATGCTTCATGCAA+AGG | + | chr3_4:49584654-49584673 | Msa0504680:CDS | 35.0% | |
ACATATTGCTTAACAGCATC+GGG | - | chr3_4:49584798-49584817 | None:intergenic | 35.0% | |
CACATATTGCTTAACAGCAT+CGG | - | chr3_4:49584799-49584818 | None:intergenic | 35.0% | |
CAAAGATGTCATAGTTGACT+TGG | - | chr3_4:49584835-49584854 | None:intergenic | 35.0% | |
GTCAACTATGACATCTTTGA+AGG | + | chr3_4:49584836-49584855 | Msa0504680:CDS | 35.0% | |
! | CTTATTGCAATGGATTCCAT+TGG | - | chr3_4:49584943-49584962 | None:intergenic | 35.0% |
! | ATACCAAGACTATTTTCGGA+CGG | - | chr3_4:49585023-49585042 | None:intergenic | 35.0% |
!!! | ATCTTTTCAGATGGACTAAG+AGG | - | chr3_4:49585083-49585102 | None:intergenic | 35.0% |
ATGCTTGTAGTATTCCACAA+TGG | - | chr3_4:49585183-49585202 | None:intergenic | 35.0% | |
AGAAATCATCTGAAAGCAGA+AGG | + | chr3_4:49585257-49585276 | Msa0504680:CDS | 35.0% | |
CTTCTTCTATTATTTGGAGG+TGG | - | chr3_4:49585299-49585318 | None:intergenic | 35.0% | |
CCTCTTCTTCTATTATTTGG+AGG | - | chr3_4:49585302-49585321 | None:intergenic | 35.0% | |
CCTCCAAATAATAGAAGAAG+AGG | + | chr3_4:49585299-49585318 | Msa0504680:CDS | 35.0% | |
GAGAAGAATTTCTGTTTCAG+TGG | - | chr3_4:49585341-49585360 | None:intergenic | 35.0% | |
AAATACCTTGACCATTCATG+AGG | + | chr3_4:49585433-49585452 | Msa0504680:CDS | 35.0% | |
! | ATTTTCCTCATGAATGGTCA+AGG | - | chr3_4:49585441-49585460 | None:intergenic | 35.0% |
TCATGAGGAAAATGTTGATC+AGG | + | chr3_4:49585448-49585467 | Msa0504680:CDS | 35.0% | |
! | TTAGAGTTGATTCATCGCTT+CGG | - | chr3_4:49585580-49585599 | None:intergenic | 35.0% |
AAGCGATGAATCAACTCTAA+GGG | + | chr3_4:49585580-49585599 | Msa0504680:CDS | 35.0% | |
! | GGTACTGAGATCAAATGAAA+GGG | + | chr3_4:49585601-49585620 | Msa0504680:CDS | 35.0% |
TTTATGATGTGAAAGGCAAG+AGG | - | chr3_4:49585642-49585661 | None:intergenic | 35.0% | |
!!! | TTTTTTGTCGAGCAAAACGT+GGG | + | chr3_4:49585720-49585739 | Msa0504680:CDS | 35.0% |
AATGCAAGATCACAAGTCTA+AGG | + | chr3_4:49585919-49585938 | Msa0504680:CDS | 35.0% | |
ACGTCTTATGATATGAAGAC+GGG | - | chr3_4:49586045-49586064 | None:intergenic | 35.0% | |
CACGTCTTATGATATGAAGA+CGG | - | chr3_4:49586046-49586065 | None:intergenic | 35.0% | |
TCATATCATAAGACGTGTCT+TGG | + | chr3_4:49586049-49586068 | Msa0504680:CDS | 35.0% | |
! | TATTCTTCTGCACCGATAAT+TGG | + | chr3_4:49586143-49586162 | Msa0504680:intron | 35.0% |
TATACTGTACTTACCATACC+TGG | + | chr3_4:49586354-49586373 | Msa0504680:intron | 35.0% | |
AATCAAAAGATGTCCAGGTA+TGG | - | chr3_4:49586370-49586389 | None:intergenic | 35.0% | |
!! | TTAGGTTGACAAAGATGACA+TGG | - | chr3_4:49586439-49586458 | None:intergenic | 35.0% |
!! | TACTGGTATCTCTACTTTTC+AGG | - | chr3_4:49586480-49586499 | None:intergenic | 35.0% |
AGTAGAGATACCAGTAAATC+CGG | + | chr3_4:49586484-49586503 | Msa0504680:CDS | 35.0% | |
GGCTAAACTCAATAAACAAG+GGG | - | chr3_4:49586568-49586587 | None:intergenic | 35.0% | |
!! | ATGAGCATTGAGACTTGATT+TGG | + | chr3_4:49586643-49586662 | Msa0504680:intron | 35.0% |
!! | TGAGCATTGAGACTTGATTT+GGG | + | chr3_4:49586644-49586663 | Msa0504680:intron | 35.0% |
CGACATTGCATGTTATAACT+TGG | + | chr3_4:49586667-49586686 | Msa0504680:intron | 35.0% | |
AAGTTCACAACTCTCATAGT+CGG | - | chr3_4:49586825-49586844 | None:intergenic | 35.0% | |
ACAGCCTTTGTGTAAAAAAC+TGG | + | chr3_4:49587135-49587154 | Msa0504680:intron | 35.0% | |
CAGCCTTTGTGTAAAAAACT+GGG | + | chr3_4:49587136-49587155 | Msa0504680:intron | 35.0% | |
GTACAATACACCAAAATGGT+GGG | + | chr3_4:49587168-49587187 | Msa0504680:intron | 35.0% | |
!! | GAGCAAATTTTGTTTGTTCC+AGG | + | chr3_4:49587263-49587282 | Msa0504680:intron | 35.0% |
! | TAAGATATCACAGTTCTGAC+AGG | + | chr3_4:49587470-49587489 | Msa0504680:intron | 35.0% |
! | AAGATATCACAGTTCTGACA+GGG | + | chr3_4:49587471-49587490 | Msa0504680:intron | 35.0% |
! | ATCGACAAATGTGGAAGTTT+TGG | + | chr3_4:49587511-49587530 | Msa0504680:intron | 35.0% |
! | TCGACAAATGTGGAAGTTTT+GGG | + | chr3_4:49587512-49587531 | Msa0504680:intron | 35.0% |
TCTGTGTTTATGAACTTCTC+AGG | + | chr3_4:49587625-49587644 | Msa0504680:intron | 35.0% | |
TTCATTTCTCTCCAGAAGTA+CGG | - | chr3_4:49587688-49587707 | None:intergenic | 35.0% | |
!! | TTCATTTTTCTTAGGGTCCT+TGG | + | chr3_4:49587844-49587863 | Msa0504680:intron | 35.0% |
TGGAATGTGTCGCATATTAA+TGG | + | chr3_4:49587921-49587940 | Msa0504680:CDS | 35.0% | |
TTGGAGAAGGTAAATGAACA+AGG | + | chr3_4:49587949-49587968 | Msa0504680:intron | 35.0% | |
TAAAAACTTCTGGCACATGA+TGG | - | chr3_4:49588352-49588371 | None:intergenic | 35.0% | |
AGTTGTAAATGCAATCACCT+TGG | - | chr3_4:49588454-49588473 | None:intergenic | 35.0% | |
!!! | AGATAGCATCTTGTTTTCGT+TGG | - | chr3_4:49588500-49588519 | None:intergenic | 35.0% |
! | TTTTGTCTATCTCTTCTGCT+TGG | - | chr3_4:49588569-49588588 | None:intergenic | 35.0% |
! | AATTGTGATAGTGACTGCAA+AGG | + | chr3_4:49588679-49588698 | Msa0504680:intron | 35.0% |
! | GCAAAGGCGATCTAATATTT+TGG | + | chr3_4:49588695-49588714 | Msa0504680:intron | 35.0% |
!!! | CTAATATTTTGGCCCTGAAA+AGG | + | chr3_4:49588706-49588725 | Msa0504680:intron | 35.0% |
AATAACAGTACAGCTGTACA+GGG | - | chr3_4:49588771-49588790 | None:intergenic | 35.0% | |
TAATAACAGTACAGCTGTAC+AGG | - | chr3_4:49588772-49588791 | None:intergenic | 35.0% | |
!! | GCATCCATCTATTTCTGTTA+TGG | + | chr3_4:49588976-49588995 | Msa0504680:intron | 35.0% |
AAGCATCTGTTATGTGTCAA+TGG | + | chr3_4:49589098-49589117 | Msa0504680:intron | 35.0% | |
AGCATCTGTTATGTGTCAAT+GGG | + | chr3_4:49589099-49589118 | Msa0504680:intron | 35.0% | |
TTCCTTCTTGTGATATGTGA+TGG | + | chr3_4:49589258-49589277 | Msa0504680:intron | 35.0% | |
AACCATCACATATCACAAGA+AGG | - | chr3_4:49589263-49589282 | None:intergenic | 35.0% | |
GAAGGCGATAATGATAATCT+TGG | + | chr3_4:49589425-49589444 | Msa0504680:CDS | 35.0% | |
TGTTGTTGATCCTCAAGAAT+TGG | - | chr3_4:49589748-49589767 | None:intergenic | 35.0% | |
!! | ACTTTTGAGTGGTTTCATTC+TGG | - | chr3_4:49589774-49589793 | None:intergenic | 35.0% |
!! | AAAAGTGCTCTTTGGTAAAG+TGG | + | chr3_4:49589788-49589807 | Msa0504680:CDS | 35.0% |
GAGAGAGTAGGTGTCAATAA+AGG | + | chr3_4:49583220-49583239 | Msa0504680:five_prime_UTR | 40.0% | |
GAGTGTGACGTTTGTTTACT+TGG | + | chr3_4:49583242-49583261 | Msa0504680:five_prime_UTR | 40.0% | |
AGGTCTCTTTCTTCTCTTCT+GGG | - | chr3_4:49583289-49583308 | None:intergenic | 40.0% | |
AAGGTCTCTTTCTTCTCTTC+TGG | - | chr3_4:49583290-49583309 | None:intergenic | 40.0% | |
! | TGGGCCTCATTATTGATTGT+TGG | + | chr3_4:49583806-49583825 | Msa0504680:intron | 40.0% |
GCTGCCAACAATCAATAATG+AGG | - | chr3_4:49583813-49583832 | None:intergenic | 40.0% | |
! | CATTATTGATTGTTGGCAGC+TGG | + | chr3_4:49583813-49583832 | Msa0504680:intron | 40.0% |
!!! | TCAGGTGAAGAGTTTTGAAG+AGG | + | chr3_4:49583918-49583937 | Msa0504680:intron | 40.0% |
!!! | CAGGTGAAGAGTTTTGAAGA+GGG | + | chr3_4:49583919-49583938 | Msa0504680:intron | 40.0% |
!!! | AGGTGAAGAGTTTTGAAGAG+GGG | + | chr3_4:49583920-49583939 | Msa0504680:intron | 40.0% |
!!! | AGTTTTGAAGAGGGGTTTCT+GGG | + | chr3_4:49583928-49583947 | Msa0504680:CDS | 40.0% |
TCACATTCAATAACTGTCCC+TGG | - | chr3_4:49583964-49583983 | None:intergenic | 40.0% | |
!! | GTGTTTTGGATGGTGATATC+GGG | + | chr3_4:49584067-49584086 | Msa0504680:CDS | 40.0% |
TAAATTACCAGGAAGCTTGG+TGG | + | chr3_4:49584178-49584197 | Msa0504680:CDS | 40.0% | |
AAATTACCAGGAAGCTTGGT+GGG | + | chr3_4:49584179-49584198 | Msa0504680:CDS | 40.0% | |
! | TGATAAGTGTGATGGAATGG+AGG | + | chr3_4:49584215-49584234 | Msa0504680:CDS | 40.0% |
! | GACTGTGTTTTTCCCTGATT+TGG | + | chr3_4:49584242-49584261 | Msa0504680:CDS | 40.0% |
TTGGGTGATGAAATGAAGGT+CGG | + | chr3_4:49584261-49584280 | Msa0504680:CDS | 40.0% | |
TGAAATGAAGGTCGGAATTC+AGG | + | chr3_4:49584269-49584288 | Msa0504680:CDS | 40.0% | |
! | AAATGCGGATTACTCAGGAT+TGG | + | chr3_4:49584292-49584311 | Msa0504680:CDS | 40.0% |
! | AATGCGGATTACTCAGGATT+GGG | + | chr3_4:49584293-49584312 | Msa0504680:CDS | 40.0% |
TCAGGATTGGGATGAAGTTA+CGG | + | chr3_4:49584305-49584324 | Msa0504680:CDS | 40.0% | |
GATTGAGGAGTTGTATCTTC+CGG | + | chr3_4:49584368-49584387 | Msa0504680:CDS | 40.0% | |
CTGGACATTGAATGAGATGA+AGG | + | chr3_4:49584452-49584471 | Msa0504680:CDS | 40.0% | |
!! | CACTTGATAATGGAGGTAGT+TGG | + | chr3_4:49584486-49584505 | Msa0504680:CDS | 40.0% |
TTTCTCAGCCTTGAAACTTC+CGG | + | chr3_4:49584539-49584558 | Msa0504680:CDS | 40.0% | |
! | GAAGCAGCTTTGATTACCAT+TGG | + | chr3_4:49584684-49584703 | Msa0504680:CDS | 40.0% |
ATGGGAAATTGACATTCTCC+AGG | + | chr3_4:49584890-49584909 | Msa0504680:CDS | 40.0% | |
TGGGAAATTGACATTCTCCA+GGG | + | chr3_4:49584891-49584910 | Msa0504680:CDS | 40.0% | |
!!! | CGGTTCTGAATCTTTTCAGA+TGG | - | chr3_4:49585092-49585111 | None:intergenic | 40.0% |
TTATTGTCCTCAAGCCATTG+TGG | + | chr3_4:49585166-49585185 | Msa0504680:CDS | 40.0% | |
TAGTATTCCACAATGGCTTG+AGG | - | chr3_4:49585176-49585195 | None:intergenic | 40.0% | |
ATCATCTGAAAGCAGAAGGA+TGG | + | chr3_4:49585261-49585280 | Msa0504680:CDS | 40.0% | |
AAACGCTTGAGGAATTCAGA+TGG | + | chr3_4:49585539-49585558 | Msa0504680:CDS | 40.0% | |
GAAGCGATGAATCAACTCTA+AGG | + | chr3_4:49585579-49585598 | Msa0504680:CDS | 40.0% | |
!! | GGGTACTGAGATCAAATGAA+AGG | + | chr3_4:49585600-49585619 | Msa0504680:CDS | 40.0% |
!! | ATCAAATGAAAGGGTGCCAA+AGG | + | chr3_4:49585610-49585629 | Msa0504680:CDS | 40.0% |
ACAGCAACATGTTGTTACCA+AGG | + | chr3_4:49585690-49585709 | Msa0504680:CDS | 40.0% | |
CATGTTGTTACCAAGGTCTA+AGG | + | chr3_4:49585697-49585716 | Msa0504680:CDS | 40.0% | |
CGACAAAAAACCTTAGACCT+TGG | - | chr3_4:49585710-49585729 | None:intergenic | 40.0% | |
!!! | GTTTTTTGTCGAGCAAAACG+TGG | + | chr3_4:49585719-49585738 | Msa0504680:CDS | 40.0% |
TCCTTCGAATTTCATGCTAC+TGG | + | chr3_4:49585821-49585840 | Msa0504680:CDS | 40.0% | |
ACCAAGTGCCAATATCTTTC+TGG | + | chr3_4:49585859-49585878 | Msa0504680:CDS | 40.0% | |
AGATAAGAGCGATCTACCAT+CGG | - | chr3_4:49585885-49585904 | None:intergenic | 40.0% | |
GACAAAACCATTCACCATCA+GGG | - | chr3_4:49586194-49586213 | None:intergenic | 40.0% | |
TGTGGCCAAAGCAAATTCAA+CGG | + | chr3_4:49586234-49586253 | Msa0504680:CDS | 40.0% | |
GTTCACACTGAATGCATGTA+AGG | - | chr3_4:49586281-49586300 | None:intergenic | 40.0% | |
CACGCAACATGATCTACATT+AGG | - | chr3_4:49586457-49586476 | None:intergenic | 40.0% | |
CACATAACTTCCGGATTTAC+TGG | - | chr3_4:49586497-49586516 | None:intergenic | 40.0% | |
CAGTAAATCCGGAAGTTATG+TGG | + | chr3_4:49586495-49586514 | Msa0504680:CDS | 40.0% | |
CTGTGGAAAAGACTGTGAAA+AGG | + | chr3_4:49586528-49586547 | Msa0504680:CDS | 40.0% | |
CTGTCCTAACAGACTTTGAA+GGG | - | chr3_4:49586753-49586772 | None:intergenic | 40.0% | |
!! | TGAATGTTTTGAGCCCCTAA+AGG | + | chr3_4:49586913-49586932 | Msa0504680:CDS | 40.0% |
CAAGAAGAGGATTCCTTTAG+GGG | - | chr3_4:49586929-49586948 | None:intergenic | 40.0% | |
GCAAGAAGAGGATTCCTTTA+GGG | - | chr3_4:49586930-49586949 | None:intergenic | 40.0% | |
TGCAAGAAGAGGATTCCTTT+AGG | - | chr3_4:49586931-49586950 | None:intergenic | 40.0% | |
CATCAAATCTCTGCAAGAAG+AGG | - | chr3_4:49586942-49586961 | None:intergenic | 40.0% | |
CTCTTCTTGCAGAGATTTGA+TGG | + | chr3_4:49586940-49586959 | Msa0504680:CDS | 40.0% | |
TTGTTGTCACGTGACTTGAA+AGG | + | chr3_4:49587091-49587110 | Msa0504680:intron | 40.0% | |
! | TTTACACAAAGGCTGTTTCC+AGG | - | chr3_4:49587131-49587150 | None:intergenic | 40.0% |
CTGCGTACAATACACCAAAA+TGG | + | chr3_4:49587164-49587183 | Msa0504680:intron | 40.0% | |
CGTACAATACACCAAAATGG+TGG | + | chr3_4:49587167-49587186 | Msa0504680:intron | 40.0% | |
GGTTATGAACTATGATCAGC+AGG | - | chr3_4:49587346-49587365 | None:intergenic | 40.0% | |
TCTGGAGAGAAATGAAGATC+TGG | + | chr3_4:49587692-49587711 | Msa0504680:CDS | 40.0% | |
TGGTCAGTGTAGCAACTATT+AGG | + | chr3_4:49587712-49587731 | Msa0504680:CDS | 40.0% | |
TGAAATCTGGTACCAACAAG+AGG | - | chr3_4:49587889-49587908 | None:intergenic | 40.0% | |
ATGACGACGATACTGAAATC+TGG | - | chr3_4:49587902-49587921 | None:intergenic | 40.0% | |
AGATTTCAGTATCGTCGTCA+TGG | + | chr3_4:49587901-49587920 | Msa0504680:CDS | 40.0% | |
AGATGAGGGATCAAGACAAA+GGG | - | chr3_4:49587985-49588004 | None:intergenic | 40.0% | |
! | CTTTGAAAATCCAAAAGCGC+CGG | - | chr3_4:49588271-49588290 | None:intergenic | 40.0% |
GGTACAAACTTGTCTCCTAT+AGG | - | chr3_4:49588428-49588447 | None:intergenic | 40.0% | |
TAAATGCAATCACCTTGGCA+AGG | - | chr3_4:49588449-49588468 | None:intergenic | 40.0% | |
CGAAAACAAGATGCTATCTC+CGG | + | chr3_4:49588501-49588520 | Msa0504680:CDS | 40.0% | |
ATTACTAGCACTACTGCTTC+CGG | - | chr3_4:49588523-49588542 | None:intergenic | 40.0% | |
GCTTGGTAAACTTCAGAAAC+TGG | - | chr3_4:49588552-49588571 | None:intergenic | 40.0% | |
! | TCAAGCGACTTTCCTTTTCA+GGG | - | chr3_4:49588721-49588740 | None:intergenic | 40.0% |
ATAACAGTACAGCTGTACAG+GGG | - | chr3_4:49588770-49588789 | None:intergenic | 40.0% | |
!! | GTAAAAAGAGTGTCGAATGC+TGG | - | chr3_4:49589049-49589068 | None:intergenic | 40.0% |
! | TGTTATTGACTGTGTCACCA+TGG | + | chr3_4:49589454-49589473 | Msa0504680:CDS | 40.0% |
CACTGTGTAGTACAACATGA+TGG | - | chr3_4:49589497-49589516 | None:intergenic | 40.0% | |
AATAGCCGCTAATGCTATTG+TGG | + | chr3_4:49589570-49589589 | Msa0504680:intron | 40.0% | |
!! | AACCACTCAAAAGTGCTCTT+TGG | + | chr3_4:49589780-49589799 | Msa0504680:CDS | 40.0% |
!!! | TACCAAAGAGCACTTTTGAG+TGG | - | chr3_4:49589785-49589804 | None:intergenic | 40.0% |
GGTCTACTTTAGACGTAAGA+AGG | + | chr3_4:49589819-49589838 | Msa0504680:CDS | 40.0% | |
TTTAGACGTAAGAAGGCGAA+AGG | + | chr3_4:49589826-49589845 | Msa0504680:CDS | 40.0% | |
TTAGACGTAAGAAGGCGAAA+GGG | + | chr3_4:49589827-49589846 | Msa0504680:CDS | 40.0% | |
GAAGCTCCAAACCCTATCAA+TGG | + | chr3_4:49583438-49583457 | Msa0504680:exon | 45.0% | |
CAAACCCTATCAATGGAGGA+GGG | + | chr3_4:49583445-49583464 | Msa0504680:exon | 45.0% | |
GAAACCCTCCTCCATTGATA+GGG | - | chr3_4:49583452-49583471 | None:intergenic | 45.0% | |
TATCAGGACCCAGTAATCTG+AGG | + | chr3_4:49583766-49583785 | Msa0504680:intron | 45.0% | |
ATCAGGACCCAGTAATCTGA+GGG | + | chr3_4:49583767-49583786 | Msa0504680:intron | 45.0% | |
!!! | GAGTTTTGAAGAGGGGTTTC+TGG | + | chr3_4:49583927-49583946 | Msa0504680:CDS | 45.0% |
!! | TGGGTTGGGTAATTTTGTGG+AGG | + | chr3_4:49584029-49584048 | Msa0504680:CDS | 45.0% |
ATCGGGTCATTGAGTAAACG+TGG | + | chr3_4:49584084-49584103 | Msa0504680:CDS | 45.0% | |
TCGGGTCATTGAGTAAACGT+GGG | + | chr3_4:49584085-49584104 | Msa0504680:CDS | 45.0% | |
TGAGTAAACGTGGGAGGATT+AGG | + | chr3_4:49584094-49584113 | Msa0504680:CDS | 45.0% | |
TTCTCAAACTCAGCCAAAGG+AGG | - | chr3_4:49584126-49584145 | None:intergenic | 45.0% | |
AGGTCGGAATTCAGGAAATG+CGG | + | chr3_4:49584277-49584296 | Msa0504680:CDS | 45.0% | |
! | TCAGGAAATGCGGATTACTC+AGG | + | chr3_4:49584287-49584306 | Msa0504680:CDS | 45.0% |
GGATGAAGTTACGGAGAAGT+GGG | + | chr3_4:49584314-49584333 | Msa0504680:CDS | 45.0% | |
CAAATTTGCCTTACCGACAC+CGG | - | chr3_4:49584390-49584409 | None:intergenic | 45.0% | |
! | AATTTGCCGTGATTGGTGAC+TGG | + | chr3_4:49584433-49584452 | Msa0504680:CDS | 45.0% |
CAATGTCCAGTCACCAATCA+CGG | - | chr3_4:49584442-49584461 | None:intergenic | 45.0% | |
!! | GTGGAGACACTTGATAATGG+AGG | + | chr3_4:49584479-49584498 | Msa0504680:CDS | 45.0% |
!! | GGAGGTAGTTGGTGATTACT+TGG | + | chr3_4:49584497-49584516 | Msa0504680:CDS | 45.0% |
TTCCATCTCCGGAAGTTTCA+AGG | - | chr3_4:49584550-49584569 | None:intergenic | 45.0% | |
AAACTTCCGGAGATGGAATC+AGG | + | chr3_4:49584552-49584571 | Msa0504680:CDS | 45.0% | |
AGTTCACCTGATTCCATCTC+CGG | - | chr3_4:49584561-49584580 | None:intergenic | 45.0% | |
GAAAGAACCTGTTGTTCCTC+CGG | + | chr3_4:49584608-49584627 | Msa0504680:CDS | 45.0% | |
GAAATTGACATTCTCCAGGG+TGG | + | chr3_4:49584894-49584913 | Msa0504680:CDS | 45.0% | |
TCCAGGGTGGTAAACAATAC+AGG | + | chr3_4:49584907-49584926 | Msa0504680:CDS | 45.0% | |
ACCTGTATTGTTTACCACCC+TGG | - | chr3_4:49584911-49584930 | None:intergenic | 45.0% | |
! | TTGCAATGGATTCCATTGGG+TGG | - | chr3_4:49584939-49584958 | None:intergenic | 45.0% |
TCTCCGTCCGAAAATAGTCT+TGG | + | chr3_4:49585017-49585036 | Msa0504680:CDS | 45.0% | |
! | ATTTGGAACGTGACAGTCAC+CGG | - | chr3_4:49585057-49585076 | None:intergenic | 45.0% |
!! | GATGGACTAAGAGGCACATT+TGG | - | chr3_4:49585074-49585093 | None:intergenic | 45.0% |
CCACAACTAGAGGAGATACT+CGG | - | chr3_4:49585112-49585131 | None:intergenic | 45.0% | |
CGAGTATCTCCTCTAGTTGT+GGG | + | chr3_4:49585110-49585129 | Msa0504680:CDS | 45.0% | |
GAGTATCTCCTCTAGTTGTG+GGG | + | chr3_4:49585111-49585130 | Msa0504680:CDS | 45.0% | |
CACTCAAGAAGACCTGCAAT+CGG | + | chr3_4:49585204-49585223 | Msa0504680:CDS | 45.0% | |
ACTCAAGAAGACCTGCAATC+GGG | + | chr3_4:49585205-49585224 | Msa0504680:CDS | 45.0% | |
! | CCTTTTATATGCCCGATTGC+AGG | - | chr3_4:49585219-49585238 | None:intergenic | 45.0% |
CCTGCAATCGGGCATATAAA+AGG | + | chr3_4:49585216-49585235 | Msa0504680:CDS | 45.0% | |
ATCGGAAGAGAAAACGCTTG+AGG | + | chr3_4:49585528-49585547 | Msa0504680:CDS | 45.0% | |
GCCAGTAGCATGAAATTCGA+AGG | - | chr3_4:49585825-49585844 | None:intergenic | 45.0% | |
GATATTGGCACTTGGTCTGA+TGG | - | chr3_4:49585855-49585874 | None:intergenic | 45.0% | |
GCCAGAAAGATATTGGCACT+TGG | - | chr3_4:49585863-49585882 | None:intergenic | 45.0% | |
ACCATCGGCCAGAAAGATAT+TGG | - | chr3_4:49585870-49585889 | None:intergenic | 45.0% | |
GCAAGATCACAAGTCTAAGG+AGG | + | chr3_4:49585922-49585941 | Msa0504680:CDS | 45.0% | |
! | ATTTGTTCCGTTTGCCGCTT+TGG | + | chr3_4:49585992-49586011 | Msa0504680:CDS | 45.0% |
AAAGAAGTTCGCCTCCAAAG+CGG | - | chr3_4:49586009-49586028 | None:intergenic | 45.0% | |
TCATAAGACGTGTCTTGGTC+TGG | + | chr3_4:49586054-49586073 | Msa0504680:CDS | 45.0% | |
CATGTATAGGATCTCCCTGA+TGG | + | chr3_4:49586177-49586196 | Msa0504680:intron | 45.0% | |
GGACAAAACCATTCACCATC+AGG | - | chr3_4:49586195-49586214 | None:intergenic | 45.0% | |
!! | TTTTGTCCATCGTGTCGATG+CGG | + | chr3_4:49586207-49586226 | Msa0504680:CDS | 45.0% |
GTGGCCAAAGCAAATTCAAC+GGG | + | chr3_4:49586235-49586254 | Msa0504680:CDS | 45.0% | |
TGGCCAAAGCAAATTCAACG+GGG | + | chr3_4:49586236-49586255 | Msa0504680:CDS | 45.0% | |
! | CACAGTCTTTTCCACAGAAC+CGG | - | chr3_4:49586525-49586544 | None:intergenic | 45.0% |
GCTGTCCTAACAGACTTTGA+AGG | - | chr3_4:49586754-49586773 | None:intergenic | 45.0% | |
TTAGGACAGCCAGTTTCAGT+GGG | + | chr3_4:49586764-49586783 | Msa0504680:CDS | 45.0% | |
GTTCATAATAAGGGGAGCCT+TGG | + | chr3_4:49587055-49587074 | Msa0504680:intron | 45.0% | |
TCACGTGACTTGAAAGGTCA+TGG | + | chr3_4:49587097-49587116 | Msa0504680:intron | 45.0% | |
CACGTGACTTGAAAGGTCAT+GGG | + | chr3_4:49587098-49587117 | Msa0504680:intron | 45.0% | |
TAACAGAAAAAAGGGCAGCC+CGG | - | chr3_4:49587234-49587253 | None:intergenic | 45.0% | |
TAACAGAAAAAAGGGCAGCC+TGG | - | chr3_4:49587234-49587253 | None:intergenic | 45.0% | |
GAAGTACGGAATAGAAACCC+TGG | - | chr3_4:49587674-49587693 | None:intergenic | 45.0% | |
GGGTTTCTATTCCGTACTTC+TGG | + | chr3_4:49587674-49587693 | Msa0504680:CDS | 45.0% | |
ATCAAGACGGCCATTACAGA+AGG | - | chr3_4:49587817-49587836 | None:intergenic | 45.0% | |
TCTTAGGGTCCTTGGAGATA+AGG | + | chr3_4:49587852-49587871 | Msa0504680:intron | 45.0% | |
CTTCAGCTACCTTATCTCCA+AGG | - | chr3_4:49587864-49587883 | None:intergenic | 45.0% | |
! | GTAGCTGAAGTACCTCTTGT+TGG | + | chr3_4:49587874-49587893 | Msa0504680:CDS | 45.0% |
CAGATGAGGGATCAAGACAA+AGG | - | chr3_4:49587986-49588005 | None:intergenic | 45.0% | |
CATCAGAAGCTCACGCAATT+AGG | + | chr3_4:49588195-49588214 | Msa0504680:intron | 45.0% | |
TTCCCACTGTGGTAGATACA+TGG | + | chr3_4:49588244-49588263 | Msa0504680:CDS | 45.0% | |
GTCCATGTATCTACCACAGT+GGG | - | chr3_4:49588249-49588268 | None:intergenic | 45.0% | |
ACTGTGGTAGATACATGGAC+CGG | + | chr3_4:49588249-49588268 | Msa0504680:CDS | 45.0% | |
TGATGGTACCCGGAAAATCT+AGG | - | chr3_4:49588335-49588354 | None:intergenic | 45.0% | |
GGCAAAACCGAATTTGGAGA+CGG | - | chr3_4:49588384-49588403 | None:intergenic | 45.0% | |
CCAGTTGGCAAAACCGAATT+TGG | - | chr3_4:49588390-49588409 | None:intergenic | 45.0% | |
! | CCAAATTCGGTTTTGCCAAC+TGG | + | chr3_4:49588387-49588406 | Msa0504680:CDS | 45.0% |
GACAAGTTTGTACCTTGCCA+AGG | + | chr3_4:49588434-49588453 | Msa0504680:intron | 45.0% | |
! | CTCAAGCGACTTTCCTTTTC+AGG | - | chr3_4:49588722-49588741 | None:intergenic | 45.0% |
TAACAGTACAGCTGTACAGG+GGG | - | chr3_4:49588769-49588788 | None:intergenic | 45.0% | |
TAGCGCCACAATAGCATTAG+CGG | - | chr3_4:49589578-49589597 | None:intergenic | 45.0% | |
TGCTCTTTGGTAAAGTGGAG+TGG | + | chr3_4:49589793-49589812 | Msa0504680:CDS | 45.0% | |
TTTGGTAAAGTGGAGTGGAC+TGG | + | chr3_4:49589798-49589817 | Msa0504680:CDS | 45.0% | |
TAGACGTAAGAAGGCGAAAG+GGG | + | chr3_4:49589828-49589847 | Msa0504680:CDS | 45.0% | |
GCTCCAAACCCTATCAATGG+AGG | + | chr3_4:49583441-49583460 | Msa0504680:exon | 50.0% | |
CCTCCTCCATTGATAGGGTT+TGG | - | chr3_4:49583447-49583466 | None:intergenic | 50.0% | |
CCAAACCCTATCAATGGAGG+AGG | + | chr3_4:49583444-49583463 | Msa0504680:exon | 50.0% | |
CGAAACCCTCCTCCATTGAT+AGG | - | chr3_4:49583453-49583472 | None:intergenic | 50.0% | |
AGTGGGTCCCTCAGATTACT+GGG | - | chr3_4:49583777-49583796 | None:intergenic | 50.0% | |
AAGTGGGTCCCTCAGATTAC+TGG | - | chr3_4:49583778-49583797 | None:intergenic | 50.0% | |
!! | AAGAGGGGTTTCTGGGATCA+TGG | + | chr3_4:49583935-49583954 | Msa0504680:CDS | 50.0% |
!! | TTTCTGGGATCATGGCATCC+AGG | + | chr3_4:49583943-49583962 | Msa0504680:CDS | 50.0% |
!! | TTCTGGGATCATGGCATCCA+GGG | + | chr3_4:49583944-49583963 | Msa0504680:CDS | 50.0% |
GGTCATTGAGTAAACGTGGG+AGG | + | chr3_4:49584088-49584107 | Msa0504680:CDS | 50.0% | |
! | AGTGTGATGGAATGGAGGAG+AGG | + | chr3_4:49584220-49584239 | Msa0504680:CDS | 50.0% |
GGGATGAAGTTACGGAGAAG+TGG | + | chr3_4:49584313-49584332 | Msa0504680:CDS | 50.0% | |
GGAGTTGTATCTTCCGGTGT+CGG | + | chr3_4:49584374-49584393 | Msa0504680:CDS | 50.0% | |
!! | TGTATCTTCCGGTGTCGGTA+AGG | + | chr3_4:49584379-49584398 | Msa0504680:CDS | 50.0% |
!! | CGGTGTCGGTAAGGCAAATT+TGG | + | chr3_4:49584388-49584407 | Msa0504680:CDS | 50.0% |
AGCCTTGAAACTTCCGGAGA+TGG | + | chr3_4:49584545-49584564 | Msa0504680:CDS | 50.0% | |
ATAGGCAAGTCCTTTCCAGC+CGG | - | chr3_4:49584630-49584649 | None:intergenic | 50.0% | |
! | GATGCTTCATGCAAAGGTGC+TGG | + | chr3_4:49584660-49584679 | Msa0504680:CDS | 50.0% |
TACAGGTACAAGCCACCCAA+TGG | + | chr3_4:49584924-49584943 | Msa0504680:CDS | 50.0% | |
GGACGGAGAAGAGTTCATCA+TGG | - | chr3_4:49585006-49585025 | None:intergenic | 50.0% | |
CTTGGTATAACGCATCCTGC+CGG | + | chr3_4:49585035-49585054 | Msa0504680:CDS | 50.0% | |
CCGAGTATCTCCTCTAGTTG+TGG | + | chr3_4:49585109-49585128 | Msa0504680:CDS | 50.0% | |
TCATCTGCCACTGCAACAGA+TGG | - | chr3_4:49585140-49585159 | None:intergenic | 50.0% | |
TCTGGGCGACTAACTCATGA+AGG | + | chr3_4:49585758-49585777 | Msa0504680:CDS | 50.0% | |
! | GCCAATATCTTTCTGGCCGA+TGG | + | chr3_4:49585866-49585885 | Msa0504680:CDS | 50.0% |
TAAGACGTGTCTTGGTCTGG+AGG | + | chr3_4:49586057-49586076 | Msa0504680:CDS | 50.0% | |
! | AGGATCTCCCTGATGGTGAA+TGG | + | chr3_4:49586184-49586203 | Msa0504680:intron | 50.0% |
! | TTTGTCCATCGTGTCGATGC+GGG | + | chr3_4:49586208-49586227 | Msa0504680:CDS | 50.0% |
GGCCAAAGCAAATTCAACGG+GGG | + | chr3_4:49586237-49586256 | Msa0504680:CDS | 50.0% | |
! | CACCCCCGTTGAATTTGCTT+TGG | - | chr3_4:49586242-49586261 | None:intergenic | 50.0% |
CAAAGCAAATTCAACGGGGG+TGG | + | chr3_4:49586240-49586259 | Msa0504680:CDS | 50.0% | |
CCGGCTTTCCACATAACTTC+CGG | - | chr3_4:49586506-49586525 | None:intergenic | 50.0% | |
CCGGAAGTTATGTGGAAAGC+CGG | + | chr3_4:49586503-49586522 | Msa0504680:CDS | 50.0% | |
! | TATGTGGAAAGCCGGTTCTG+TGG | + | chr3_4:49586511-49586530 | Msa0504680:CDS | 50.0% |
GCAGCCCTTCAAAGTCTGTT+AGG | + | chr3_4:49586746-49586765 | Msa0504680:CDS | 50.0% | |
GTTAGGACAGCCAGTTTCAG+TGG | + | chr3_4:49586763-49586782 | Msa0504680:CDS | 50.0% | |
TGGGTGCGGACAATCTAACA+TGG | + | chr3_4:49586783-49586802 | Msa0504680:CDS | 50.0% | |
ACAACTTTACCGTTGCGCCA+AGG | - | chr3_4:49587075-49587094 | None:intergenic | 50.0% | |
AAGGTCATGGGTTCAAGTCC+TGG | + | chr3_4:49587110-49587129 | Msa0504680:intron | 50.0% | |
! | AGGAAGAGGTCCCACCATTT+TGG | - | chr3_4:49587181-49587200 | None:intergenic | 50.0% |
! | AAAATGGTGGGACCTCTTCC+TGG | + | chr3_4:49587180-49587199 | Msa0504680:intron | 50.0% |
GAAGCTCACGCAATTAGGAG+TGG | + | chr3_4:49588200-49588219 | Msa0504680:intron | 50.0% | |
TTTACCTGCTGTTCCCACTG+TGG | + | chr3_4:49588233-49588252 | Msa0504680:CDS | 50.0% | |
GGTCCATGTATCTACCACAG+TGG | - | chr3_4:49588250-49588269 | None:intergenic | 50.0% | |
TTCTGGCACATGATGGTACC+CGG | - | chr3_4:49588345-49588364 | None:intergenic | 50.0% | |
AACAGTACAGCTGTACAGGG+GGG | - | chr3_4:49588768-49588787 | None:intergenic | 50.0% | |
CTGAGGGACCCACTTTCTCT+TGG | + | chr3_4:49583783-49583802 | Msa0504680:intron | 55.0% | |
AGGGACCCACTTTCTCTTGG+TGG | + | chr3_4:49583786-49583805 | Msa0504680:intron | 55.0% | |
GGGACCCACTTTCTCTTGGT+GGG | + | chr3_4:49583787-49583806 | Msa0504680:intron | 55.0% | |
GAGGCCCACCAAGAGAAAGT+GGG | - | chr3_4:49583794-49583813 | None:intergenic | 55.0% | |
TGAGGCCCACCAAGAGAAAG+TGG | - | chr3_4:49583795-49583814 | None:intergenic | 55.0% | |
GATTAGGCCAGTGCCTCCTT+TGG | + | chr3_4:49584110-49584129 | Msa0504680:CDS | 55.0% | |
! | AACTCAGCCAAAGGAGGCAC+TGG | - | chr3_4:49584120-49584139 | None:intergenic | 55.0% |
! | TACCAGGAAGCTTGGTGGGA+AGG | + | chr3_4:49584183-49584202 | Msa0504680:CDS | 55.0% |
TTTCCAGCCGGAGGAACAAC+AGG | - | chr3_4:49584618-49584637 | None:intergenic | 55.0% | |
TGTTGTTCCTCCGGCTGGAA+AGG | + | chr3_4:49584617-49584636 | Msa0504680:CDS | 55.0% | |
GATGGAAGCCCCACAACTAG+AGG | - | chr3_4:49585122-49585141 | None:intergenic | 55.0% | |
GATTCATCGCTTCGGCGCTT+TGG | - | chr3_4:49585572-49585591 | None:intergenic | 55.0% | |
AGGCAAGAGGAAGACGCCTT+TGG | - | chr3_4:49585629-49585648 | None:intergenic | 55.0% | |
GGCACCGTACTGTGCTTTCT+GGG | + | chr3_4:49585741-49585760 | Msa0504680:CDS | 55.0% | |
! | GTCGCCCAGAAAGCACAGTA+CGG | - | chr3_4:49585748-49585767 | None:intergenic | 55.0% |
CCTTGACGCAAACGACTGTG+TGG | - | chr3_4:49585959-49585978 | None:intergenic | 55.0% | |
CCACACAGTCGTTTGCGTCA+AGG | + | chr3_4:49585956-49585975 | Msa0504680:CDS | 55.0% | |
!! | TGTTCCGTTTGCCGCTTTGG+AGG | + | chr3_4:49585995-49586014 | Msa0504680:CDS | 55.0% |
TTCGCCTCCAAAGCGGCAAA+CGG | - | chr3_4:49586002-49586021 | None:intergenic | 55.0% | |
ACGTGTCTTGGTCTGGAGGT+AGG | + | chr3_4:49586061-49586080 | Msa0504680:intron | 55.0% | |
! | CAAATCCCGCATCGACACGA+TGG | - | chr3_4:49586216-49586235 | None:intergenic | 55.0% |
! | TCGTGTCGATGCGGGATTTG+TGG | + | chr3_4:49586216-49586235 | Msa0504680:CDS | 55.0% |
CAAATTCAACGGGGGTGGTG+AGG | + | chr3_4:49586245-49586264 | Msa0504680:CDS | 55.0% | |
ACAGCCAGTTTCAGTGGGTG+CGG | + | chr3_4:49586769-49586788 | Msa0504680:CDS | 55.0% | |
TTGTCCGCACCCACTGAAAC+TGG | - | chr3_4:49586776-49586795 | None:intergenic | 55.0% | |
CATACACAGGGTCCAGGAAG+AGG | - | chr3_4:49587195-49587214 | None:intergenic | 55.0% | |
CTTCCTGGACCCTGTGTATG+CGG | + | chr3_4:49587195-49587214 | Msa0504680:intron | 55.0% | |
TTCCTGGACCCTGTGTATGC+GGG | + | chr3_4:49587196-49587215 | Msa0504680:intron | 55.0% | |
!! | GAAAAGGGGGCGTCAGATGA+GGG | - | chr3_4:49587999-49588018 | None:intergenic | 55.0% |
!! | TGAAAAGGGGGCGTCAGATG+AGG | - | chr3_4:49588000-49588019 | None:intergenic | 55.0% |
TCTACCACAGTGGGAACAGC+AGG | - | chr3_4:49588240-49588259 | None:intergenic | 55.0% | |
! | GATACATGGACCGGCGCTTT+TGG | + | chr3_4:49588258-49588277 | Msa0504680:CDS | 55.0% |
! | GTGCGCTGCTTTCAGCAATG+TGG | - | chr3_4:49589158-49589177 | None:intergenic | 55.0% |
GGCGGAGCAACCAATTCTTG+AGG | + | chr3_4:49589735-49589754 | Msa0504680:intron | 55.0% | |
CACCTTCCCACCAAGCTTCC+TGG | - | chr3_4:49584188-49584207 | None:intergenic | 60.0% | |
AGTGGGAGCGACGAGGGAAA+TGG | + | chr3_4:49584331-49584350 | Msa0504680:CDS | 60.0% | |
GAACCTGTTGTTCCTCCGGC+TGG | + | chr3_4:49584612-49584631 | Msa0504680:CDS | 60.0% | |
GGGGCTTCCATCTGTTGCAG+TGG | + | chr3_4:49585130-49585149 | Msa0504680:CDS | 60.0% | |
! | GGGCACCGTACTGTGCTTTC+TGG | + | chr3_4:49585740-49585759 | Msa0504680:CDS | 60.0% |
TAAGGGGAGCCTTGGCGCAA+CGG | + | chr3_4:49587063-49587082 | Msa0504680:intron | 60.0% | |
ACGGAGAAGTGGGAGCGACG+AGG | + | chr3_4:49584324-49584343 | Msa0504680:CDS | 65.0% | |
CGGAGAAGTGGGAGCGACGA+GGG | + | chr3_4:49584325-49584344 | Msa0504680:CDS | 65.0% | |
GGCAAGTCCTTTCCAGCCGG+AGG | - | chr3_4:49584627-49584646 | None:intergenic | 65.0% | |
GGAACGTGACAGTCACCGGC+AGG | - | chr3_4:49585053-49585072 | None:intergenic | 65.0% | |
CATCGCTTCGGCGCTTTGGC+AGG | - | chr3_4:49585568-49585587 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 49583220 | 49589864 | 49583220 | ID=Msa0504680;Name=Msa0504680 |
chr3_4 | mRNA | 49583220 | 49589864 | 49583220 | ID=Msa0504680-mRNA-1;Parent=Msa0504680;Name=Msa0504680-mRNA-1;_AED=0.05;_eAED=0.05;_QI=237|1|0.81|1|1|1|11|0|1126 |
chr3_4 | exon | 49583220 | 49583522 | 49583220 | ID=Msa0504680-mRNA-1:exon:10630;Parent=Msa0504680-mRNA-1 |
chr3_4 | exon | 49583922 | 49586078 | 49583922 | ID=Msa0504680-mRNA-1:exon:10631;Parent=Msa0504680-mRNA-1 |
chr3_4 | exon | 49586186 | 49586306 | 49586186 | ID=Msa0504680-mRNA-1:exon:10632;Parent=Msa0504680-mRNA-1 |
chr3_4 | exon | 49586464 | 49586549 | 49586464 | ID=Msa0504680-mRNA-1:exon:10633;Parent=Msa0504680-mRNA-1 |
chr3_4 | exon | 49586740 | 49586984 | 49586740 | ID=Msa0504680-mRNA-1:exon:10634;Parent=Msa0504680-mRNA-1 |
chr3_4 | exon | 49587647 | 49587733 | 49587647 | ID=Msa0504680-mRNA-1:exon:10635;Parent=Msa0504680-mRNA-1 |
chr3_4 | exon | 49587858 | 49587957 | 49587858 | ID=Msa0504680-mRNA-1:exon:10636;Parent=Msa0504680-mRNA-1 |
chr3_4 | exon | 49588201 | 49588408 | 49588201 | ID=Msa0504680-mRNA-1:exon:10637;Parent=Msa0504680-mRNA-1 |
chr3_4 | exon | 49588493 | 49588616 | 49588493 | ID=Msa0504680-mRNA-1:exon:10638;Parent=Msa0504680-mRNA-1 |
chr3_4 | exon | 49589418 | 49589475 | 49589418 | ID=Msa0504680-mRNA-1:exon:10639;Parent=Msa0504680-mRNA-1 |
chr3_4 | exon | 49589736 | 49589864 | 49589736 | ID=Msa0504680-mRNA-1:exon:10640;Parent=Msa0504680-mRNA-1 |
chr3_4 | five_prime_UTR | 49583220 | 49583456 | 49583220 | ID=Msa0504680-mRNA-1:five_prime_utr;Parent=Msa0504680-mRNA-1 |
chr3_4 | CDS | 49583457 | 49583522 | 49583457 | ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1 |
chr3_4 | CDS | 49583922 | 49586078 | 49583922 | ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1 |
chr3_4 | CDS | 49586186 | 49586306 | 49586186 | ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1 |
chr3_4 | CDS | 49586464 | 49586549 | 49586464 | ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1 |
chr3_4 | CDS | 49586740 | 49586984 | 49586740 | ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1 |
chr3_4 | CDS | 49587647 | 49587733 | 49587647 | ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1 |
chr3_4 | CDS | 49587858 | 49587957 | 49587858 | ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1 |
chr3_4 | CDS | 49588201 | 49588408 | 49588201 | ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1 |
chr3_4 | CDS | 49588493 | 49588616 | 49588493 | ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1 |
chr3_4 | CDS | 49589418 | 49589475 | 49589418 | ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1 |
chr3_4 | CDS | 49589736 | 49589864 | 49589736 | ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1 |
Gene Sequence |
Protein sequence |