AlfalfaGEDB | Msa0504680

M. sativa cultivar zhongmu-4 / Msa0504680

KEGG: -
GO: GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
PFAM: PF05641.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504680	XP_013460282.1	92.438	1124	83	1	3	1126	2	1123	0.0	2127

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504680	sp\|F4IXE7\|IDM1_ARATH	35.714	462	279	7	573	1020	575	1032	6.51e-85	303

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504680	A0A072UYY7	92.438	1124	83	1	3	1126	2	1123	0.0	2127

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TFs/TRs:

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Gene ID	Type	Classification
Msa0504680	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504680	MtrunA17_Chr3g0105291	92.438	1124	83	1	3	1126	2	1123	0.0	2127
Msa0504680	MtrunA17_Chr5g0430361	50.962	728	328	11	302	1021	361	1067	0.0	707
Msa0504680	MtrunA17_Chr5g0430361	47.405	289	125	6	23	301	5	276	5.03e-72	261
Msa0504680	MtrunA17_Chr5g0407211	41.898	432	214	9	604	1011	1	419	6.93e-109	347
Msa0504680	MtrunA17_Chr5g0407251	41.435	432	216	9	604	1011	1	419	6.13e-108	344
Msa0504680	MtrunA17_Chr7g0270101	42.857	420	219	10	605	1015	383	790	7.44e-105	348
Msa0504680	MtrunA17_Chr4g0012501	68.000	250	65	4	3	237	2	251	1.36e-104	329
Msa0504680	MtrunA17_Chr3g0134811	37.527	469	216	10	605	1011	338	791	6.55e-96	323
Msa0504680	MtrunA17_Chr3g0134821	41.827	416	225	8	605	1011	425	832	8.45e-92	313
Msa0504680	MtrunA17_Chr1g0205451	40.097	414	235	8	606	1012	606	1013	3.47e-84	301

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504680	AT5G58610.3	37.158	1098	563	26	12	1052	23	1050	0.0	677
Msa0504680	AT5G58610.8	37.666	1054	535	23	12	1011	23	1008	0.0	672
Msa0504680	AT5G58610.2	37.666	1054	535	23	12	1011	23	1008	0.0	672
Msa0504680	AT5G58610.5	37.201	1086	555	26	24	1052	26	1041	0.0	670
Msa0504680	AT5G58610.7	37.201	1086	555	26	24	1052	26	1041	0.0	669
Msa0504680	AT5G58610.6	36.648	1086	535	29	24	1052	26	1015	0.0	638
Msa0504680	AT5G58610.1	36.648	1086	535	29	24	1052	26	1015	0.0	637
Msa0504680	AT5G58610.10	36.427	1002	515	23	12	959	23	956	0.0	605
Msa0504680	AT5G58610.9	36.465	990	507	23	24	959	26	947	0.0	597
Msa0504680	AT5G58610.11	35.504	952	492	23	24	921	26	909	6.56e-178	545

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Find 268 sgRNAs with CRISPR-Local

Find 490 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGCTCTTTGGTAAAG+TGG	0.488818	3_4:+49589788	Msa0504680:CDS
AAAATATTCTGAATGATAAT+GGG	0.444654	3_4:+49584010	Msa0504680:CDS
AAACGCTTGAGGAATTCAGA+TGG	0.640084	3_4:+49585539	Msa0504680:CDS
AAACTTCCGGAGATGGAATC+AGG	0.401835	3_4:+49584552	Msa0504680:CDS
AAAGAAGTTCGCCTCCAAAG+CGG	0.687855	3_4:-49586006	None:intergenic
AAAGGGGAACCTGAAGCGTA+GGG	0.646182	3_4:+49589844	Msa0504680:CDS
AAATACCTTGACCATTCATG+AGG	0.588685	3_4:+49585433	Msa0504680:CDS
AAATATTCCGTCTCCAAATT+CGG	0.370835	3_4:+49588374	Msa0504680:CDS
AAATGATAAGTGTGATGGAA+TGG	0.570523	3_4:+49584212	Msa0504680:CDS
AAATGCGGATTACTCAGGAT+TGG	0.511598	3_4:+49584292	Msa0504680:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTTCGTATTTAGTTGAAAC+AGG	-	chr3_4:49583410-49583429	None:intergenic	30.0%
GAAAATCAATGAAAGAGTTG+AGG	+	chr3_4:49583501-49583520	Msa0504680:CDS	30.0%
TGACTGTTATGATGTTGAAA+AGG	+	chr3_4:49583610-49583629	Msa0504680:intron	30.0%
TTAGGGAAAGAAATTGTATC+AGG	+	chr3_4:49583750-49583769	Msa0504680:intron	30.0%
GAGAAATTTGATCTTGAGTA+TGG	+	chr3_4:49584141-49584160	Msa0504680:CDS	30.0%
GTTGTAAATGATAAGTGTGA+TGG	+	chr3_4:49584207-49584226	Msa0504680:CDS	30.0%
GTATGATGTACGACAAAAAA+AGG	+	chr3_4:49584410-49584429	Msa0504680:CDS	30.0%
AGGTGAACTATTATCTGAAA+AGG	+	chr3_4:49584572-49584591	Msa0504680:CDS	30.0%
TTCATTTGTCTCAAAACCAA+TGG	-	chr3_4:49584703-49584722	None:intergenic	30.0%
ACACCTCTTCTTCTATTATT+TGG	-	chr3_4:49585305-49585324	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	49583220	49589864	49583220	ID=Msa0504680;Name=Msa0504680
chr3_4	mRNA	49583220	49589864	49583220	ID=Msa0504680-mRNA-1;Parent=Msa0504680;Name=Msa0504680-mRNA-1;_AED=0.05;_eAED=0.05;_QI=237\|1\|0.81\|1\|1\|1\|11\|0\|1126
chr3_4	exon	49583220	49583522	49583220	ID=Msa0504680-mRNA-1:exon:10630;Parent=Msa0504680-mRNA-1
chr3_4	exon	49583922	49586078	49583922	ID=Msa0504680-mRNA-1:exon:10631;Parent=Msa0504680-mRNA-1
chr3_4	exon	49586186	49586306	49586186	ID=Msa0504680-mRNA-1:exon:10632;Parent=Msa0504680-mRNA-1
chr3_4	exon	49586464	49586549	49586464	ID=Msa0504680-mRNA-1:exon:10633;Parent=Msa0504680-mRNA-1
chr3_4	exon	49586740	49586984	49586740	ID=Msa0504680-mRNA-1:exon:10634;Parent=Msa0504680-mRNA-1
chr3_4	exon	49587647	49587733	49587647	ID=Msa0504680-mRNA-1:exon:10635;Parent=Msa0504680-mRNA-1
chr3_4	exon	49587858	49587957	49587858	ID=Msa0504680-mRNA-1:exon:10636;Parent=Msa0504680-mRNA-1
chr3_4	exon	49588201	49588408	49588201	ID=Msa0504680-mRNA-1:exon:10637;Parent=Msa0504680-mRNA-1
chr3_4	exon	49588493	49588616	49588493	ID=Msa0504680-mRNA-1:exon:10638;Parent=Msa0504680-mRNA-1
chr3_4	exon	49589418	49589475	49589418	ID=Msa0504680-mRNA-1:exon:10639;Parent=Msa0504680-mRNA-1
chr3_4	exon	49589736	49589864	49589736	ID=Msa0504680-mRNA-1:exon:10640;Parent=Msa0504680-mRNA-1
chr3_4	five_prime_UTR	49583220	49583456	49583220	ID=Msa0504680-mRNA-1:five_prime_utr;Parent=Msa0504680-mRNA-1
chr3_4	CDS	49583457	49583522	49583457	ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1
chr3_4	CDS	49583922	49586078	49583922	ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1
chr3_4	CDS	49586186	49586306	49586186	ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1
chr3_4	CDS	49586464	49586549	49586464	ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1
chr3_4	CDS	49586740	49586984	49586740	ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1
chr3_4	CDS	49587647	49587733	49587647	ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1
chr3_4	CDS	49587858	49587957	49587858	ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1
chr3_4	CDS	49588201	49588408	49588201	ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1
chr3_4	CDS	49588493	49588616	49588493	ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1
chr3_4	CDS	49589418	49589475	49589418	ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1
chr3_4	CDS	49589736	49589864	49589736	ID=Msa0504680-mRNA-1:cds;Parent=Msa0504680-mRNA-1

Gene Sequence

>Msa0504680

ATGGAGGAGGGTTTCGAGACTTCATCAAACTCGCAATCAAAGCTGAAAATCAATGAAAGAGTTGAGGTGAAGAGTTTTGAAGAGGGGTTTCTGGGATCATGGCATCCAGGGACAGTTATTGAATGTGAGAAGCTGAAGCGTCATGTTCGATATGAAAATATTCTGAATGATAATGGGTTGGGTAATTTTGTGGAGGTAGTGAGTGTTTCAAGTGTTTTGGATGGTGATATCGGGTCATTGAGTAAACGTGGGAGGATTAGGCCAGTGCCTCCTTTGGCTGAGTTTGAGAAATTTGATCTTGAGTATGGTTTGTGTGTTGATGTAAATTACCAGGAAGCTTGGTGGGAAGGTGTTGTAAATGATAAGTGTGATGGAATGGAGGAGAGGACTGTGTTTTTCCCTGATTTGGGTGATGAAATGAAGGTCGGAATTCAGGAAATGCGGATTACTCAGGATTGGGATGAAGTTACGGAGAAGTGGGAGCGACGAGGGAAATGGTTGCTTTTTGAATTGATTGAGGAGTTGTATCTTCCGGTGTCGGTAAGGCAAATTTGGTATGATGTACGACAAAAAAAGGAATTTGCCGTGATTGGTGACTGGACATTGAATGAGATGAAGGATTTGTGGAGACACTTGATAATGGAGGTAGTTGGTGATTACTTGGCTGTTACAGTAAAGGAAGTTTTCTCAGCCTTGAAACTTCCGGAGATGGAATCAGGTGAACTATTATCTGAAAAGGAAAAGTTTGAGCAGAAAGAACCTGTTGTTCCTCCGGCTGGAAAGGACTTGCCTATGTTTCAAAATGATGCTTCATGCAAAGGTGCTGGTGAAGCAGCTTTGATTACCATTGGTTTTGAGACAAATGAACACAGATCGTCAACTGATTTAAAGTCAAATGATCGGTGGGAACGTGTAATAATTTCTGAAACTGAATACTGTCCCGATGCTGTTAAGCAATATGTGCTTGCTTTTGACTCCAAGTCAACTATGACATCTTTGAAGGAAAAAGTATGGAAACATCTTACATATATTGGATGGGAAATTGACATTCTCCAGGGTGGTAAACAATACAGGTACAAGCCACCCAATGGAATCCATTGCAATAAGAAAGTTTACTACTCACTTATTGAACTTTGTAAAGCTGAATCCATGATGAACTCTTCTCCGTCCGAAAATAGTCTTGGTATAACGCATCCTGCCGGTGACTGTCACGTTCCAAATGTGCCTCTTAGTCCATCTGAAAAGATTCAGAACCGAGTATCTCCTCTAGTTGTGGGGCTTCCATCTGTTGCAGTGGCAGATGAACAAGCTTATTGTCCTCAAGCCATTGTGGAATACTACAAGCATGCACTCAAGAAGACCTGCAATCGGGCATATAAAAGGAAACTTATTTCAAAAGTAAGAAATCATCTGAAAGCAGAAGGATGGATTTTAATTGATCCACCTCCAAATAATAGAAGAAGAGGTGTTTTATACATTTCTCCACTGAAACAGAAATTCTTCTCATTGAATACAGTATGCAGTTTCTTACTTAAAGAAAGTATTCAGAAATCGACTATTTCTGGCATGCAACCTTTAAATACCTTGACCATTCATGAGGAAAATGTTGATCAGGTATTGAGTGATGATTTATCAAGTAGAGACAGTGTTGCTGCGAATAAATCAAGTGCAAATCGGAAGAGAAAACGCTTGAGGAATTCAGATGGCAGCCTGCCAAAGCGCCGAAGCGATGAATCAACTCTAAGGGTACTGAGATCAAATGAAAGGGTGCCAAAGGCGTCTTCCTCTTGCCTTTCACATCATAAACCTTTAAATGTTCTGTCTTGGTTGATAGACAGCAACATGTTGTTACCAAGGTCTAAGGTTTTTTGTCGAGCAAAACGTGGGCACCGTACTGTGCTTTCTGGGCGACTAACTCATGAAGGCATCAAGTGTAACTGTTGTTCAAGAATATACAGTCTTGTTTCCTTCGAATTTCATGCTACTGGCAGTAATACCATCAGACCAAGTGCCAATATCTTTCTGGCCGATGGTAGATCGCTCTTATCTTGCCAGATACAAATAATGCAAGATCACAAGTCTAAGGAGGCTATGATAAAACCACACAGTCGTTTGCGTCAAGGTGAAAACGACTACATTTGTTCCGTTTGCCGCTTTGGAGGCGAACTTCTTTTGTGTGATCAATGCCCGTCTTCATATCATAAGACGTGTCTTGGTCTGGAGGATCTCCCTGATGGTGAATGGTTTTGTCCATCGTGTCGATGCGGGATTTGTGGCCAAAGCAAATTCAACGGGGGTGGTGAGGATGAACATTTCCTTACATGCATTCAGTGTGAACATAAATATCATGTTGCGTGCCTGAAAAGTAGAGATACCAGTAAATCCGGAAGTTATGTGGAAAGCCGGTTCTGTGGAAAAGACTGTGAAAAGTTATATGCAGCCCTTCAAAGTCTGTTAGGACAGCCAGTTTCAGTGGGTGCGGACAATCTAACATGGACATTAGTGAAGTGTGCCGACTATGAGAGTTGTGAACTTGATAATAGTAAAAGTGGATTATTGGCAGAAAGTTACAGCAAACTCAATGTTGCTCTTTCATTGATGCATGAATGTTTTGAGCCCCTAAAGGAATCCTCTTCTTGCAGAGATTTGATGGAAAATGTTTTATTCAGTCGATGGTCAGAACTTAATCGAATGAATTTCCAGGGTTTCTATTCCGTACTTCTGGAGAGAAATGAAGATCTGGTCAGTGTAGCAACTATTAGGGTCCTTGGAGATAAGGTAGCTGAAGTACCTCTTGTTGGTACCAGATTTCAGTATCGTCGTCATGGAATGTGTCGCATATTAATGGATGAATTGGAGAAGAAGCTCACGCAATTAGGAGTGGAGCGTCTCGTTTTACCTGCTGTTCCCACTGTGGTAGATACATGGACCGGCGCTTTTGGATTTTCAAAGATGCCAAACTTTGAAAGATCACAATTTCTAAACTATACTTTCCTAGATTTTCCGGGTACCATCATGTGCCAGAAGTTTTTAGCAAATATTCCGTCTCCAAATTCGGTTTTGCCAACTGAGTTCCAACGAAAACAAGATGCTATCTCCGGAAGCAGTAGTGCTAGTAATAAGTCTCCAGTTTCTGAAGTTTACCAAGCAGAAGAGATAGACAAAAGAGAATTGTTGGATCAACAAATGATGGATACTTCTGAAGGCGATAATGATAATCTTGGCAGTGCTGTTATTGACTGTGTCACCATGGCGGAGCAACCAATTCTTGAGGATCAACAACATTGCCAGAATGAAACCACTCAAAAGTGCTCTTTGGTAAAGTGGAGTGGACTGGTCTACTTTAGACGTAAGAAGGCGAAAGGGGAACCTGAAGCGTAG

Protein sequence

>Msa0504680

MEEGFETSSNSQSKLKINERVEVKSFEEGFLGSWHPGTVIECEKLKRHVRYENILNDNGLGNFVEVVSVSSVLDGDIGSLSKRGRIRPVPPLAEFEKFDLEYGLCVDVNYQEAWWEGVVNDKCDGMEERTVFFPDLGDEMKVGIQEMRITQDWDEVTEKWERRGKWLLFELIEELYLPVSVRQIWYDVRQKKEFAVIGDWTLNEMKDLWRHLIMEVVGDYLAVTVKEVFSALKLPEMESGELLSEKEKFEQKEPVVPPAGKDLPMFQNDASCKGAGEAALITIGFETNEHRSSTDLKSNDRWERVIISETEYCPDAVKQYVLAFDSKSTMTSLKEKVWKHLTYIGWEIDILQGGKQYRYKPPNGIHCNKKVYYSLIELCKAESMMNSSPSENSLGITHPAGDCHVPNVPLSPSEKIQNRVSPLVVGLPSVAVADEQAYCPQAIVEYYKHALKKTCNRAYKRKLISKVRNHLKAEGWILIDPPPNNRRRGVLYISPLKQKFFSLNTVCSFLLKESIQKSTISGMQPLNTLTIHEENVDQVLSDDLSSRDSVAANKSSANRKRKRLRNSDGSLPKRRSDESTLRVLRSNERVPKASSSCLSHHKPLNVLSWLIDSNMLLPRSKVFCRAKRGHRTVLSGRLTHEGIKCNCCSRIYSLVSFEFHATGSNTIRPSANIFLADGRSLLSCQIQIMQDHKSKEAMIKPHSRLRQGENDYICSVCRFGGELLLCDQCPSSYHKTCLGLEDLPDGEWFCPSCRCGICGQSKFNGGGEDEHFLTCIQCEHKYHVACLKSRDTSKSGSYVESRFCGKDCEKLYAALQSLLGQPVSVGADNLTWTLVKCADYESCELDNSKSGLLAESYSKLNVALSLMHECFEPLKESSSCRDLMENVLFSRWSELNRMNFQGFYSVLLERNEDLVSVATIRVLGDKVAEVPLVGTRFQYRRHGMCRILMDELEKKLTQLGVERLVLPAVPTVVDTWTGAFGFSKMPNFERSQFLNYTFLDFPGTIMCQKFLANIPSPNSVLPTEFQRKQDAISGSSSASNKSPVSEVYQAEEIDKRELLDQQMMDTSEGDNDNLGSAVIDCVTMAEQPILEDQQHCQNETTQKCSLVKWSGLVYFRRKKAKGEPEA*