AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0504880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504880 MtrunA17_Chr3g0105631 89.786 421 10 1 1 421 1 388 0.0 778
Msa0504880 MtrunA17_Chr5g0401351 44.316 431 185 7 8 421 11 403 2.70e-115 343
Msa0504880 MtrunA17_Chr4g0053961 44.780 431 174 8 17 420 17 410 1.03e-112 336
Msa0504880 MtrunA17_Chr4g0001411 43.124 429 183 13 8 420 25 408 8.41e-97 295
Msa0504880 MtrunA17_Chr4g0068331 35.520 442 216 17 4 420 9 406 1.27e-68 223
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504880 AT2G30090.1 49.286 420 159 8 8 421 15 386 6.48e-129 377
Msa0504880 AT2G23060.1 43.891 442 183 9 8 420 7 412 6.74e-116 345
Msa0504880 AT4G37580.1 44.240 434 186 8 8 420 4 402 1.35e-113 338
Msa0504880 AT5G67430.1 41.204 432 191 10 3 421 5 386 1.36e-105 318
Msa0504880 AT4G37580.2 46.221 344 160 5 98 420 6 345 2.43e-96 293
Msa0504880 AT5G67430.2 43.675 332 163 7 103 421 1 321 1.40e-90 277
Msa0504880 AT2G23060.2 46.809 282 136 4 149 420 1 278 1.02e-83 258

Find 86 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGATTTCTTTAACCCTTT+TGG 0.154907 3_4:-50035198 Msa0504880:CDS
TTTAAAGATGATATTAATAT+TGG 0.198020 3_4:-50035384 Msa0504880:CDS
ATTAAGGAATAAATTAAGTT+TGG 0.224040 3_4:-50035424 Msa0504880:CDS
AGCTCTTGTAGGTGGGATTT+TGG 0.230695 3_4:+50034918 None:intergenic
TTCACTAGCTTCCCTGAAAA+TGG 0.245411 3_4:+50035141 None:intergenic
CTATTTGGCACTTGTCCATT+AGG 0.291316 3_4:+50035360 None:intergenic
AATATATTTCCTATATCATT+AGG 0.292377 3_4:+50035444 None:intergenic
GTGTATAACAAACAACAAAA+AGG 0.302675 3_4:+50035276 None:intergenic
CTAAGCATAGCCCAACTATT+TGG 0.310916 3_4:+50035345 None:intergenic
TTAAGGAATAAATTAAGTTT+GGG 0.313536 3_4:-50035423 Msa0504880:CDS
ATGATATAGGAAATATATTA+AGG 0.325837 3_4:-50035440 Msa0504880:CDS
TTTATGCACCACAAATCTTC+AGG 0.326456 3_4:+50034988 None:intergenic
AGGACATCCACCAAAGGATT+TGG 0.330187 3_4:-50035793 Msa0504880:CDS
ATGTCAATTTGTGCACAATA+TGG 0.349042 3_4:-50035112 Msa0504880:CDS
ATCATACTTTAAACCTCTCT+TGG 0.350495 3_4:+50034883 None:intergenic
GATATTAATATTGGGCCTAA+TGG 0.352217 3_4:-50035375 Msa0504880:CDS
AGTTTAACTACACAAAGTTT+AGG 0.361536 3_4:-50035599 Msa0504880:CDS
TTAAAGATGATATTAATATT+GGG 0.372605 3_4:-50035383 Msa0504880:CDS
TAGGGTATGCCCTAGGCTTA+AGG 0.378312 3_4:-50035764 Msa0504880:CDS
ATAAAAGTTGTAACTGTTCA+AGG 0.382489 3_4:-50035813 Msa0504880:CDS
GTTTCTCTTCACAGACACTA+TGG 0.386937 3_4:-50036416 Msa0504880:CDS
TCTCCACATCATAGAAGAAA+AGG 0.405669 3_4:-50035738 Msa0504880:CDS
CCAAAAGGGTTAAAGAAATC+AGG 0.405999 3_4:+50035198 None:intergenic
ATCACTCTATAGAAGATTCA+TGG 0.406094 3_4:-50035484 Msa0504880:CDS
GAGATATTCAAGTTAAAGAT+AGG 0.413312 3_4:-50035306 Msa0504880:CDS
CCTACTGTTGCCAAATCCTT+TGG 0.417451 3_4:+50035783 None:intergenic
AGCAGAGCTTGACAATGAAT+TGG 0.418408 3_4:-50035856 Msa0504880:CDS
AAGATTATTGTGACTGAAGT+TGG 0.419377 3_4:-50035063 Msa0504880:CDS
TCTCATGCCCTGAAGATTTG+TGG 0.422983 3_4:-50034996 Msa0504880:CDS
TACATAAAATAAAATCCAAA+AGG 0.427077 3_4:+50035183 None:intergenic
ATTCTTCTAATGTTCTTACT+AGG 0.427168 3_4:+50035703 None:intergenic
TGAAGATTTGTGGTGCATAA+AGG 0.428454 3_4:-50034986 Msa0504880:CDS
CAAACAACATTGAAATATCT+AGG 0.430645 3_4:-50035527 Msa0504880:CDS
CTATGGGTGACCCCATTTGT+AGG 0.434012 3_4:-50036399 Msa0504880:CDS
ATAAATTAAGTTTGGGGACA+TGG 0.434467 3_4:-50035416 Msa0504880:CDS
GAATTGGTTGGTGTCATTCA+AGG 0.456359 3_4:-50035840 Msa0504880:CDS
ATGGACAAGTGCCAAATAGT+TGG 0.459933 3_4:-50035356 Msa0504880:CDS
GTATGCATAGTCCACATCAT+TGG 0.466746 3_4:+50035671 None:intergenic
ACTGTTTCGAATCCTACAAA+TGG 0.469226 3_4:+50036387 None:intergenic
TCATACTTTAAACCTCTCTT+GGG 0.469463 3_4:+50034884 None:intergenic
TTTAATGAGTGATGGTTCAC+AGG 0.470283 3_4:+50035555 None:intergenic
AGGGTATGCCCTAGGCTTAA+GGG 0.471150 3_4:-50035763 Msa0504880:CDS
CTGTTTCGAATCCTACAAAT+GGG 0.471230 3_4:+50036388 None:intergenic
GTTGGGCTATGCTTAGTGTA+TGG 0.480182 3_4:-50035338 Msa0504880:CDS
ACTGTTGCCAAATCCTTTGG+TGG 0.486849 3_4:+50035786 None:intergenic
TGGACAAGTGCCAAATAGTT+GGG 0.496162 3_4:-50035355 Msa0504880:CDS
TTAAAGAAATCAGGTAAAGT+AGG 0.499517 3_4:+50035207 None:intergenic
TAGTAAGAACATTAGAAGAA+TGG 0.512758 3_4:-50035701 Msa0504880:CDS
ACAGGGTTAACAAGAATAGA+TGG 0.514152 3_4:+50035573 None:intergenic
TTATGCACCACAAATCTTCA+GGG 0.517119 3_4:+50034989 None:intergenic
GTTTAGAATCAGAAGCTATG+AGG 0.517776 3_4:-50036509 Msa0504880:CDS
ATATACCAGCATCATGTACA+AGG 0.526000 3_4:+50036363 None:intergenic
TCACTCTATAGAAGATTCAT+GGG 0.529453 3_4:-50035483 Msa0504880:CDS
ACATAAAATAAAATCCAAAA+GGG 0.537102 3_4:+50035184 None:intergenic
CTCCACATCATAGAAGAAAA+GGG 0.538419 3_4:-50035737 Msa0504880:CDS
ATGGTTCATTTCCAATGATG+TGG 0.539215 3_4:-50035682 Msa0504880:CDS
ATGTATGGTGTGTATCATGA+AGG 0.541875 3_4:-50035165 Msa0504880:CDS
TTTCTCTTCACAGACACTAT+GGG 0.544269 3_4:-50036415 Msa0504880:CDS
GTGGAGATACCCTTAAGCCT+AGG 0.544733 3_4:+50035754 None:intergenic
ATGCTTAGTGTATGGAATAG+TGG 0.546161 3_4:-50035330 Msa0504880:CDS
ATTAAGTTTGGGGACATGGA+TGG 0.547711 3_4:-50035412 Msa0504880:CDS
CAGTCCCTTGTACATGATGC+TGG 0.551002 3_4:-50036368 Msa0504880:intron
CATCATAGAAGAAAAGGGAT+TGG 0.551271 3_4:-50035732 Msa0504880:CDS
TAAGGAATAAATTAAGTTTG+GGG 0.567784 3_4:-50035422 Msa0504880:CDS
AAAATCTTCAATATATATTG+CGG 0.569542 3_4:+50036073 None:intergenic
CAAAGGATTTGGCAACAGTA+GGG 0.570122 3_4:-50035782 Msa0504880:CDS
CCAAAGGATTTGGCAACAGT+AGG 0.570760 3_4:-50035783 Msa0504880:CDS
TTTAGAATCAGAAGCTATGA+GGG 0.576337 3_4:-50036508 Msa0504880:CDS
TTAGAGAGAAAATGTGAGGT+AGG 0.580395 3_4:-50036454 Msa0504880:CDS
ATTATTGTGACTGAAGTTGG+AGG 0.580952 3_4:-50035060 Msa0504880:CDS
TGGAGATACCCTTAAGCCTA+GGG 0.588065 3_4:+50035755 None:intergenic
GCAACAGTAGGGTATGCCCT+AGG 0.591773 3_4:-50035771 Msa0504880:CDS
TCAGTTTAGAACTGCAAATG+TGG 0.603528 3_4:-50036096 Msa0504880:intron
TGATGTGGACTATGCATACA+TGG 0.605779 3_4:-50035667 Msa0504880:CDS
TTAATGAGTGATGGTTCACA+GGG 0.619510 3_4:+50035556 None:intergenic
GAGCTTGACAATGAATTGGT+TGG 0.628667 3_4:-50035852 Msa0504880:CDS
AAGAGAAACACACTTTCTGA+TGG 0.631909 3_4:+50036430 None:intergenic
TCAATCATCACATTCCACAT+TGG 0.637209 3_4:-50035026 Msa0504880:CDS
AAATTTAGAGAGAAAATGTG+AGG 0.640564 3_4:-50036458 Msa0504880:CDS
GTTCATGAAGAGATTGACTG+AGG 0.679343 3_4:+50035623 None:intergenic
CATGAGAGCAACTTCCAATG+TGG 0.679406 3_4:+50035012 None:intergenic
TGTATGGTGTGTATCATGAA+GGG 0.680044 3_4:-50035164 Msa0504880:CDS
TGTTCAAGGACATCCACCAA+AGG 0.683056 3_4:-50035799 Msa0504880:CDS
TATACCAGCATCATGTACAA+GGG 0.703192 3_4:+50036364 None:intergenic
CACTCTATAGAAGATTCATG+GGG 0.722156 3_4:-50035482 Msa0504880:CDS
TGTTTCGAATCCTACAAATG+GGG 0.724283 3_4:+50036389 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAGATGATATTAATAT+TGG - chr3_4:50036030-50036049 Msa0504880:CDS 10.0%
!! TTAAAGATGATATTAATATT+GGG - chr3_4:50036031-50036050 Msa0504880:CDS 10.0%
!! TTTAAAGATGATATTAATAT+TGG - chr3_4:50036030-50036049 Msa0504880:CDS 10.0%
!! TTAAAGATGATATTAATATT+GGG - chr3_4:50036031-50036050 Msa0504880:CDS 10.0%
!! AAAATCTTCAATATATATTG+CGG + chr3_4:50035344-50035363 None:intergenic 15.0%
!! AATATATTTCCTATATCATT+AGG + chr3_4:50035973-50035992 None:intergenic 15.0%
!! ATGATATAGGAAATATATTA+AGG - chr3_4:50035974-50035993 Msa0504880:intron 15.0%
!! ATTAAGGAATAAATTAAGTT+TGG - chr3_4:50035990-50036009 Msa0504880:intron 15.0%
!! TTAAGGAATAAATTAAGTTT+GGG - chr3_4:50035991-50036010 Msa0504880:intron 15.0%
!! ACATAAAATAAAATCCAAAA+GGG + chr3_4:50036233-50036252 None:intergenic 15.0%
!! TACATAAAATAAAATCCAAA+AGG + chr3_4:50036234-50036253 None:intergenic 15.0%
!!! TTTGGATTTTATTTTATGTA+TGG - chr3_4:50036234-50036253 Msa0504880:intron 15.0%
!! AAAATCTTCAATATATATTG+CGG + chr3_4:50035344-50035363 None:intergenic 15.0%
!! AATATATTTCCTATATCATT+AGG + chr3_4:50035973-50035992 None:intergenic 15.0%
!! ATGATATAGGAAATATATTA+AGG - chr3_4:50035974-50035993 Msa0504880:intron 15.0%
!! ATTAAGGAATAAATTAAGTT+TGG - chr3_4:50035990-50036009 Msa0504880:intron 15.0%
!! TTAAGGAATAAATTAAGTTT+GGG - chr3_4:50035991-50036010 Msa0504880:intron 15.0%
!! ACATAAAATAAAATCCAAAA+GGG + chr3_4:50036233-50036252 None:intergenic 15.0%
!! TACATAAAATAAAATCCAAA+AGG + chr3_4:50036234-50036253 None:intergenic 15.0%
!!! TTTGGATTTTATTTTATGTA+TGG - chr3_4:50036234-50036253 Msa0504880:intron 15.0%
!! GAGAAAAAAAGGAAAAAAAA+GGG + chr3_4:50035124-50035143 None:intergenic 20.0%
!! AGAGAAAAAAAGGAAAAAAA+AGG + chr3_4:50035125-50035144 None:intergenic 20.0%
!!! ATACTTTTAAATTGTGATTG+CGG - chr3_4:50035195-50035214 Msa0504880:CDS 20.0%
!!! TGCATTTTACTATAATAGAA+AGG - chr3_4:50035399-50035418 Msa0504880:CDS 20.0%
!! TAAGGAATAAATTAAGTTTG+GGG - chr3_4:50035992-50036011 Msa0504880:intron 20.0%
!! GAGAAAAAAAGGAAAAAAAA+GGG + chr3_4:50035124-50035143 None:intergenic 20.0%
!! AGAGAAAAAAAGGAAAAAAA+AGG + chr3_4:50035125-50035144 None:intergenic 20.0%
!!! ATACTTTTAAATTGTGATTG+CGG - chr3_4:50035195-50035214 Msa0504880:CDS 20.0%
!!! TGCATTTTACTATAATAGAA+AGG - chr3_4:50035399-50035418 Msa0504880:CDS 20.0%
!! TAAGGAATAAATTAAGTTTG+GGG - chr3_4:50035992-50036011 Msa0504880:intron 20.0%
! AAATTTAGAGAGAAAATGTG+AGG - chr3_4:50034956-50034975 Msa0504880:CDS 25.0%
! AAAGGAAAAGAGAGAAAAAA+AGG + chr3_4:50035135-50035154 None:intergenic 25.0%
! AAATGGGATTGATCTATAAA+AGG + chr3_4:50035153-50035172 None:intergenic 25.0%
!! AAGAACAAGGAGTATAAAAT+GGG + chr3_4:50035169-50035188 None:intergenic 25.0%
!! AAAGAACAAGGAGTATAAAA+TGG + chr3_4:50035170-50035189 None:intergenic 25.0%
! AAAGTATACTAGAAAGAACA+AGG + chr3_4:50035182-50035201 None:intergenic 25.0%
!!! GAAAACATGGTTTTAAATTG+TGG + chr3_4:50035487-50035506 None:intergenic 25.0%
! TAACTTCTTAATTGGATGTT+AGG - chr3_4:50035534-50035553 Msa0504880:CDS 25.0%
! ATAAAAGTTGTAACTGTTCA+AGG - chr3_4:50035601-50035620 Msa0504880:CDS 25.0%
! ATTCTTCTAATGTTCTTACT+AGG + chr3_4:50035714-50035733 None:intergenic 25.0%
! TAGTAAGAACATTAGAAGAA+TGG - chr3_4:50035713-50035732 Msa0504880:CDS 25.0%
! AGTTTAACTACACAAAGTTT+AGG - chr3_4:50035815-50035834 Msa0504880:CDS 25.0%
!! TTGAGATTTTTAATGAGTGA+TGG + chr3_4:50035870-50035889 None:intergenic 25.0%
! CAAACAACATTGAAATATCT+AGG - chr3_4:50035887-50035906 Msa0504880:intron 25.0%
!!! GAGTTTTTTCCTAATGATAT+AGG - chr3_4:50035961-50035980 Msa0504880:intron 25.0%
!! GAGATATTCAAGTTAAAGAT+AGG - chr3_4:50036108-50036127 Msa0504880:intron 25.0%
! GTGTATAACAAACAACAAAA+AGG + chr3_4:50036141-50036160 None:intergenic 25.0%
!!! GTTTGTTATACACAAAAAGT+TGG - chr3_4:50036148-50036167 Msa0504880:intron 25.0%
!! AAGTAGGCAATTTTAAACAT+GGG + chr3_4:50036194-50036213 None:intergenic 25.0%
!! AAAGTAGGCAATTTTAAACA+TGG + chr3_4:50036195-50036214 None:intergenic 25.0%
! TTAAAGAAATCAGGTAAAGT+AGG + chr3_4:50036210-50036229 None:intergenic 25.0%
! AAATTTAGAGAGAAAATGTG+AGG - chr3_4:50034956-50034975 Msa0504880:CDS 25.0%
! AAAGGAAAAGAGAGAAAAAA+AGG + chr3_4:50035135-50035154 None:intergenic 25.0%
! AAATGGGATTGATCTATAAA+AGG + chr3_4:50035153-50035172 None:intergenic 25.0%
!! AAGAACAAGGAGTATAAAAT+GGG + chr3_4:50035169-50035188 None:intergenic 25.0%
!! AAAGAACAAGGAGTATAAAA+TGG + chr3_4:50035170-50035189 None:intergenic 25.0%
! AAAGTATACTAGAAAGAACA+AGG + chr3_4:50035182-50035201 None:intergenic 25.0%
!!! GAAAACATGGTTTTAAATTG+TGG + chr3_4:50035487-50035506 None:intergenic 25.0%
! TAACTTCTTAATTGGATGTT+AGG - chr3_4:50035534-50035553 Msa0504880:CDS 25.0%
! ATAAAAGTTGTAACTGTTCA+AGG - chr3_4:50035601-50035620 Msa0504880:CDS 25.0%
! ATTCTTCTAATGTTCTTACT+AGG + chr3_4:50035714-50035733 None:intergenic 25.0%
! TAGTAAGAACATTAGAAGAA+TGG - chr3_4:50035713-50035732 Msa0504880:CDS 25.0%
! AGTTTAACTACACAAAGTTT+AGG - chr3_4:50035815-50035834 Msa0504880:CDS 25.0%
!! TTGAGATTTTTAATGAGTGA+TGG + chr3_4:50035870-50035889 None:intergenic 25.0%
! CAAACAACATTGAAATATCT+AGG - chr3_4:50035887-50035906 Msa0504880:intron 25.0%
!!! GAGTTTTTTCCTAATGATAT+AGG - chr3_4:50035961-50035980 Msa0504880:intron 25.0%
!! GAGATATTCAAGTTAAAGAT+AGG - chr3_4:50036108-50036127 Msa0504880:intron 25.0%
! GTGTATAACAAACAACAAAA+AGG + chr3_4:50036141-50036160 None:intergenic 25.0%
!!! GTTTGTTATACACAAAAAGT+TGG - chr3_4:50036148-50036167 Msa0504880:intron 25.0%
!! AAGTAGGCAATTTTAAACAT+GGG + chr3_4:50036194-50036213 None:intergenic 25.0%
!! AAAGTAGGCAATTTTAAACA+TGG + chr3_4:50036195-50036214 None:intergenic 25.0%
! TTAAAGAAATCAGGTAAAGT+AGG + chr3_4:50036210-50036229 None:intergenic 25.0%
! TTTAGAATCAGAAGCTATGA+GGG - chr3_4:50034906-50034925 Msa0504880:CDS 30.0%
TCTCATAACCCTTTATATTG+CGG - chr3_4:50035277-50035296 Msa0504880:CDS 30.0%
! ACTGAAGTTTAAAACCATTG+TGG + chr3_4:50035303-50035322 None:intergenic 30.0%
GATCAAAGAACTTGAAAACA+TGG + chr3_4:50035500-50035519 None:intergenic 30.0%
ACATCCAATTAAGAAGTTAG+TGG + chr3_4:50035533-50035552 None:intergenic 30.0%
ATCACTCTATAGAAGATTCA+TGG - chr3_4:50035930-50035949 Msa0504880:intron 30.0%
TCACTCTATAGAAGATTCAT+GGG - chr3_4:50035931-50035950 Msa0504880:intron 30.0%
ATCATTAGGAAAAAACTCTG+TGG + chr3_4:50035959-50035978 None:intergenic 30.0%
ATAAATTAAGTTTGGGGACA+TGG - chr3_4:50035998-50036017 Msa0504880:intron 30.0%
GATATTAATATTGGGCCTAA+TGG - chr3_4:50036039-50036058 Msa0504880:CDS 30.0%
ATGTCAATTTGTGCACAATA+TGG - chr3_4:50036302-50036321 Msa0504880:intron 30.0%
AAGATTATTGTGACTGAAGT+TGG - chr3_4:50036351-50036370 Msa0504880:intron 30.0%
!! ATAAAGGCACTGAAAAATGA+AGG - chr3_4:50036444-50036463 Msa0504880:CDS 30.0%
! TTTAGAATCAGAAGCTATGA+GGG - chr3_4:50034906-50034925 Msa0504880:CDS 30.0%
TCTCATAACCCTTTATATTG+CGG - chr3_4:50035277-50035296 Msa0504880:CDS 30.0%
! ACTGAAGTTTAAAACCATTG+TGG + chr3_4:50035303-50035322 None:intergenic 30.0%
GATCAAAGAACTTGAAAACA+TGG + chr3_4:50035500-50035519 None:intergenic 30.0%
ACATCCAATTAAGAAGTTAG+TGG + chr3_4:50035533-50035552 None:intergenic 30.0%
ATCACTCTATAGAAGATTCA+TGG - chr3_4:50035930-50035949 Msa0504880:intron 30.0%
TCACTCTATAGAAGATTCAT+GGG - chr3_4:50035931-50035950 Msa0504880:intron 30.0%
ATCATTAGGAAAAAACTCTG+TGG + chr3_4:50035959-50035978 None:intergenic 30.0%
ATAAATTAAGTTTGGGGACA+TGG - chr3_4:50035998-50036017 Msa0504880:intron 30.0%
GATATTAATATTGGGCCTAA+TGG - chr3_4:50036039-50036058 Msa0504880:CDS 30.0%
ATGTCAATTTGTGCACAATA+TGG - chr3_4:50036302-50036321 Msa0504880:intron 30.0%
AAGATTATTGTGACTGAAGT+TGG - chr3_4:50036351-50036370 Msa0504880:intron 30.0%
!! ATAAAGGCACTGAAAAATGA+AGG - chr3_4:50036444-50036463 Msa0504880:CDS 30.0%
! GTTTAGAATCAGAAGCTATG+AGG - chr3_4:50034905-50034924 Msa0504880:CDS 35.0%
TTAGAGAGAAAATGTGAGGT+AGG - chr3_4:50034960-50034979 Msa0504880:CDS 35.0%
AAGAGAAACACACTTTCTGA+TGG + chr3_4:50034987-50035006 None:intergenic 35.0%
TTTCTCTTCACAGACACTAT+GGG - chr3_4:50034999-50035018 Msa0504880:CDS 35.0%
TGTTTCGAATCCTACAAATG+GGG + chr3_4:50035028-50035047 None:intergenic 35.0%
CTGTTTCGAATCCTACAAAT+GGG + chr3_4:50035029-50035048 None:intergenic 35.0%
ACTGTTTCGAATCCTACAAA+TGG + chr3_4:50035030-50035049 None:intergenic 35.0%
TATACCAGCATCATGTACAA+GGG + chr3_4:50035053-50035072 None:intergenic 35.0%
ATATACCAGCATCATGTACA+AGG + chr3_4:50035054-50035073 None:intergenic 35.0%
! TCAGTTTAGAACTGCAAATG+TGG - chr3_4:50035318-50035337 Msa0504880:CDS 35.0%
!!! GCACTTACGGTTTTAAATTG+TGG + chr3_4:50035443-50035462 None:intergenic 35.0%
TCCACCACTAACTTCTTAAT+TGG - chr3_4:50035526-50035545 Msa0504880:CDS 35.0%
TCCAATTAAGAAGTTAGTGG+TGG + chr3_4:50035530-50035549 None:intergenic 35.0%
TCTCCACATCATAGAAGAAA+AGG - chr3_4:50035676-50035695 Msa0504880:CDS 35.0%
CTCCACATCATAGAAGAAAA+GGG - chr3_4:50035677-50035696 Msa0504880:CDS 35.0%
! ATCCCTTTTCTTCTATGATG+TGG + chr3_4:50035682-50035701 None:intergenic 35.0%
CATCATAGAAGAAAAGGGAT+TGG - chr3_4:50035682-50035701 Msa0504880:CDS 35.0%
ATGGTTCATTTCCAATGATG+TGG - chr3_4:50035732-50035751 Msa0504880:CDS 35.0%
ACAGGGTTAACAAGAATAGA+TGG + chr3_4:50035844-50035863 None:intergenic 35.0%
TTAATGAGTGATGGTTCACA+GGG + chr3_4:50035861-50035880 None:intergenic 35.0%
TTTAATGAGTGATGGTTCAC+AGG + chr3_4:50035862-50035881 None:intergenic 35.0%
CACTCTATAGAAGATTCATG+GGG - chr3_4:50035932-50035951 Msa0504880:intron 35.0%
ATGCTTAGTGTATGGAATAG+TGG - chr3_4:50036084-50036103 Msa0504880:CDS 35.0%
CCAAAAGGGTTAAAGAAATC+AGG + chr3_4:50036219-50036238 None:intergenic 35.0%
! CCTGATTTCTTTAACCCTTT+TGG - chr3_4:50036216-50036235 Msa0504880:intron 35.0%
ATGTATGGTGTGTATCATGA+AGG - chr3_4:50036249-50036268 Msa0504880:intron 35.0%
TGTATGGTGTGTATCATGAA+GGG - chr3_4:50036250-50036269 Msa0504880:intron 35.0%
ATTATTGTGACTGAAGTTGG+AGG - chr3_4:50036354-50036373 Msa0504880:intron 35.0%
TCAATCATCACATTCCACAT+TGG - chr3_4:50036388-50036407 Msa0504880:CDS 35.0%
TTATGCACCACAAATCTTCA+GGG + chr3_4:50036428-50036447 None:intergenic 35.0%
TTTATGCACCACAAATCTTC+AGG + chr3_4:50036429-50036448 None:intergenic 35.0%
TGAAGATTTGTGGTGCATAA+AGG - chr3_4:50036428-50036447 Msa0504880:CDS 35.0%
TCTACAAAAAGAGCTCTTGT+AGG + chr3_4:50036510-50036529 None:intergenic 35.0%
! GTTTAGAATCAGAAGCTATG+AGG - chr3_4:50034905-50034924 Msa0504880:CDS 35.0%
TTAGAGAGAAAATGTGAGGT+AGG - chr3_4:50034960-50034979 Msa0504880:CDS 35.0%
AAGAGAAACACACTTTCTGA+TGG + chr3_4:50034987-50035006 None:intergenic 35.0%
TTTCTCTTCACAGACACTAT+GGG - chr3_4:50034999-50035018 Msa0504880:CDS 35.0%
TGTTTCGAATCCTACAAATG+GGG + chr3_4:50035028-50035047 None:intergenic 35.0%
CTGTTTCGAATCCTACAAAT+GGG + chr3_4:50035029-50035048 None:intergenic 35.0%
ACTGTTTCGAATCCTACAAA+TGG + chr3_4:50035030-50035049 None:intergenic 35.0%
TATACCAGCATCATGTACAA+GGG + chr3_4:50035053-50035072 None:intergenic 35.0%
ATATACCAGCATCATGTACA+AGG + chr3_4:50035054-50035073 None:intergenic 35.0%
! TCAGTTTAGAACTGCAAATG+TGG - chr3_4:50035318-50035337 Msa0504880:CDS 35.0%
!!! GCACTTACGGTTTTAAATTG+TGG + chr3_4:50035443-50035462 None:intergenic 35.0%
TCCACCACTAACTTCTTAAT+TGG - chr3_4:50035526-50035545 Msa0504880:CDS 35.0%
TCCAATTAAGAAGTTAGTGG+TGG + chr3_4:50035530-50035549 None:intergenic 35.0%
TCTCCACATCATAGAAGAAA+AGG - chr3_4:50035676-50035695 Msa0504880:CDS 35.0%
CTCCACATCATAGAAGAAAA+GGG - chr3_4:50035677-50035696 Msa0504880:CDS 35.0%
! ATCCCTTTTCTTCTATGATG+TGG + chr3_4:50035682-50035701 None:intergenic 35.0%
CATCATAGAAGAAAAGGGAT+TGG - chr3_4:50035682-50035701 Msa0504880:CDS 35.0%
ATGGTTCATTTCCAATGATG+TGG - chr3_4:50035732-50035751 Msa0504880:CDS 35.0%
ACAGGGTTAACAAGAATAGA+TGG + chr3_4:50035844-50035863 None:intergenic 35.0%
TTAATGAGTGATGGTTCACA+GGG + chr3_4:50035861-50035880 None:intergenic 35.0%
TTTAATGAGTGATGGTTCAC+AGG + chr3_4:50035862-50035881 None:intergenic 35.0%
CACTCTATAGAAGATTCATG+GGG - chr3_4:50035932-50035951 Msa0504880:intron 35.0%
ATGCTTAGTGTATGGAATAG+TGG - chr3_4:50036084-50036103 Msa0504880:CDS 35.0%
CCAAAAGGGTTAAAGAAATC+AGG + chr3_4:50036219-50036238 None:intergenic 35.0%
! CCTGATTTCTTTAACCCTTT+TGG - chr3_4:50036216-50036235 Msa0504880:intron 35.0%
ATGTATGGTGTGTATCATGA+AGG - chr3_4:50036249-50036268 Msa0504880:intron 35.0%
TGTATGGTGTGTATCATGAA+GGG - chr3_4:50036250-50036269 Msa0504880:intron 35.0%
ATTATTGTGACTGAAGTTGG+AGG - chr3_4:50036354-50036373 Msa0504880:intron 35.0%
TCAATCATCACATTCCACAT+TGG - chr3_4:50036388-50036407 Msa0504880:CDS 35.0%
TTATGCACCACAAATCTTCA+GGG + chr3_4:50036428-50036447 None:intergenic 35.0%
TTTATGCACCACAAATCTTC+AGG + chr3_4:50036429-50036448 None:intergenic 35.0%
TGAAGATTTGTGGTGCATAA+AGG - chr3_4:50036428-50036447 Msa0504880:CDS 35.0%
TCTACAAAAAGAGCTCTTGT+AGG + chr3_4:50036510-50036529 None:intergenic 35.0%
GTTTCTCTTCACAGACACTA+TGG - chr3_4:50034998-50035017 Msa0504880:CDS 40.0%
CATTGTGGCCGCAATATAAA+GGG + chr3_4:50035288-50035307 None:intergenic 40.0%
AGCAGAGCTTGACAATGAAT+TGG - chr3_4:50035558-50035577 Msa0504880:CDS 40.0%
GAGCTTGACAATGAATTGGT+TGG - chr3_4:50035562-50035581 Msa0504880:CDS 40.0%
!! GAATTGGTTGGTGTCATTCA+AGG - chr3_4:50035574-50035593 Msa0504880:CDS 40.0%
CAAAGGATTTGGCAACAGTA+GGG - chr3_4:50035632-50035651 Msa0504880:CDS 40.0%
GTATGCATAGTCCACATCAT+TGG + chr3_4:50035746-50035765 None:intergenic 40.0%
! TGATGTGGACTATGCATACA+TGG - chr3_4:50035747-50035766 Msa0504880:CDS 40.0%
GTTCATGAAGAGATTGACTG+AGG + chr3_4:50035794-50035813 None:intergenic 40.0%
ATTAAGTTTGGGGACATGGA+TGG - chr3_4:50036002-50036021 Msa0504880:intron 40.0%
CTATTTGGCACTTGTCCATT+AGG + chr3_4:50036057-50036076 None:intergenic 40.0%
ATGGACAAGTGCCAAATAGT+TGG - chr3_4:50036058-50036077 Msa0504880:CDS 40.0%
TGGACAAGTGCCAAATAGTT+GGG - chr3_4:50036059-50036078 Msa0504880:CDS 40.0%
CTAAGCATAGCCCAACTATT+TGG + chr3_4:50036072-50036091 None:intergenic 40.0%
!! TATCATGAAGGGCCATTTTC+AGG - chr3_4:50036261-50036280 Msa0504880:intron 40.0%
!! ATCATGAAGGGCCATTTTCA+GGG - chr3_4:50036262-50036281 Msa0504880:intron 40.0%
! TTCACTAGCTTCCCTGAAAA+TGG + chr3_4:50036276-50036295 None:intergenic 40.0%
CAAAAAGAGCTCTTGTAGGT+GGG + chr3_4:50036506-50036525 None:intergenic 40.0%
ACAAAAAGAGCTCTTGTAGG+TGG + chr3_4:50036507-50036526 None:intergenic 40.0%
! TCTTTTTGTAGACCCAAGAG+AGG - chr3_4:50036518-50036537 Msa0504880:CDS 40.0%
GTTTCTCTTCACAGACACTA+TGG - chr3_4:50034998-50035017 Msa0504880:CDS 40.0%
CATTGTGGCCGCAATATAAA+GGG + chr3_4:50035288-50035307 None:intergenic 40.0%
AGCAGAGCTTGACAATGAAT+TGG - chr3_4:50035558-50035577 Msa0504880:CDS 40.0%
GAGCTTGACAATGAATTGGT+TGG - chr3_4:50035562-50035581 Msa0504880:CDS 40.0%
!! GAATTGGTTGGTGTCATTCA+AGG - chr3_4:50035574-50035593 Msa0504880:CDS 40.0%
CAAAGGATTTGGCAACAGTA+GGG - chr3_4:50035632-50035651 Msa0504880:CDS 40.0%
GTATGCATAGTCCACATCAT+TGG + chr3_4:50035746-50035765 None:intergenic 40.0%
! TGATGTGGACTATGCATACA+TGG - chr3_4:50035747-50035766 Msa0504880:CDS 40.0%
GTTCATGAAGAGATTGACTG+AGG + chr3_4:50035794-50035813 None:intergenic 40.0%
ATTAAGTTTGGGGACATGGA+TGG - chr3_4:50036002-50036021 Msa0504880:intron 40.0%
CTATTTGGCACTTGTCCATT+AGG + chr3_4:50036057-50036076 None:intergenic 40.0%
ATGGACAAGTGCCAAATAGT+TGG - chr3_4:50036058-50036077 Msa0504880:CDS 40.0%
TGGACAAGTGCCAAATAGTT+GGG - chr3_4:50036059-50036078 Msa0504880:CDS 40.0%
CTAAGCATAGCCCAACTATT+TGG + chr3_4:50036072-50036091 None:intergenic 40.0%
!! TATCATGAAGGGCCATTTTC+AGG - chr3_4:50036261-50036280 Msa0504880:intron 40.0%
!! ATCATGAAGGGCCATTTTCA+GGG - chr3_4:50036262-50036281 Msa0504880:intron 40.0%
! TTCACTAGCTTCCCTGAAAA+TGG + chr3_4:50036276-50036295 None:intergenic 40.0%
CAAAAAGAGCTCTTGTAGGT+GGG + chr3_4:50036506-50036525 None:intergenic 40.0%
ACAAAAAGAGCTCTTGTAGG+TGG + chr3_4:50036507-50036526 None:intergenic 40.0%
! TCTTTTTGTAGACCCAAGAG+AGG - chr3_4:50036518-50036537 Msa0504880:CDS 40.0%
CCATTGTGGCCGCAATATAA+AGG + chr3_4:50035289-50035308 None:intergenic 45.0%
CCTTTATATTGCGGCCACAA+TGG - chr3_4:50035286-50035305 Msa0504880:CDS 45.0%
TGTTCAAGGACATCCACCAA+AGG - chr3_4:50035615-50035634 Msa0504880:CDS 45.0%
AGGACATCCACCAAAGGATT+TGG - chr3_4:50035621-50035640 Msa0504880:CDS 45.0%
ACTGTTGCCAAATCCTTTGG+TGG + chr3_4:50035631-50035650 None:intergenic 45.0%
CCTACTGTTGCCAAATCCTT+TGG + chr3_4:50035634-50035653 None:intergenic 45.0%
CCAAAGGATTTGGCAACAGT+AGG - chr3_4:50035631-50035650 Msa0504880:CDS 45.0%
TGGAGATACCCTTAAGCCTA+GGG + chr3_4:50035662-50035681 None:intergenic 45.0%
GTTGGGCTATGCTTAGTGTA+TGG - chr3_4:50036076-50036095 Msa0504880:CDS 45.0%
CATGAGAGCAACTTCCAATG+TGG + chr3_4:50036405-50036424 None:intergenic 45.0%
TCTCATGCCCTGAAGATTTG+TGG - chr3_4:50036418-50036437 Msa0504880:CDS 45.0%
! AGCTCTTGTAGGTGGGATTT+TGG + chr3_4:50036499-50036518 None:intergenic 45.0%
CCATTGTGGCCGCAATATAA+AGG + chr3_4:50035289-50035308 None:intergenic 45.0%
CCTTTATATTGCGGCCACAA+TGG - chr3_4:50035286-50035305 Msa0504880:CDS 45.0%
TGTTCAAGGACATCCACCAA+AGG - chr3_4:50035615-50035634 Msa0504880:CDS 45.0%
AGGACATCCACCAAAGGATT+TGG - chr3_4:50035621-50035640 Msa0504880:CDS 45.0%
ACTGTTGCCAAATCCTTTGG+TGG + chr3_4:50035631-50035650 None:intergenic 45.0%
CCTACTGTTGCCAAATCCTT+TGG + chr3_4:50035634-50035653 None:intergenic 45.0%
CCAAAGGATTTGGCAACAGT+AGG - chr3_4:50035631-50035650 Msa0504880:CDS 45.0%
TGGAGATACCCTTAAGCCTA+GGG + chr3_4:50035662-50035681 None:intergenic 45.0%
GTTGGGCTATGCTTAGTGTA+TGG - chr3_4:50036076-50036095 Msa0504880:CDS 45.0%
CATGAGAGCAACTTCCAATG+TGG + chr3_4:50036405-50036424 None:intergenic 45.0%
TCTCATGCCCTGAAGATTTG+TGG - chr3_4:50036418-50036437 Msa0504880:CDS 45.0%
! AGCTCTTGTAGGTGGGATTT+TGG + chr3_4:50036499-50036518 None:intergenic 45.0%
CTATGGGTGACCCCATTTGT+AGG - chr3_4:50035015-50035034 Msa0504880:CDS 50.0%
CAGTCCCTTGTACATGATGC+TGG - chr3_4:50035046-50035065 Msa0504880:CDS 50.0%
TGCAGTTGTGGCTGCACTTA+CGG + chr3_4:50035456-50035475 None:intergenic 50.0%
GTGGTCAGCATATGCAGTTG+TGG + chr3_4:50035468-50035487 None:intergenic 50.0%
TAGGGTATGCCCTAGGCTTA+AGG - chr3_4:50035650-50035669 Msa0504880:CDS 50.0%
AGGGTATGCCCTAGGCTTAA+GGG - chr3_4:50035651-50035670 Msa0504880:CDS 50.0%
GTGGAGATACCCTTAAGCCT+AGG + chr3_4:50035663-50035682 None:intergenic 50.0%
CTATGGGTGACCCCATTTGT+AGG - chr3_4:50035015-50035034 Msa0504880:CDS 50.0%
CAGTCCCTTGTACATGATGC+TGG - chr3_4:50035046-50035065 Msa0504880:CDS 50.0%
TGCAGTTGTGGCTGCACTTA+CGG + chr3_4:50035456-50035475 None:intergenic 50.0%
GTGGTCAGCATATGCAGTTG+TGG + chr3_4:50035468-50035487 None:intergenic 50.0%
TAGGGTATGCCCTAGGCTTA+AGG - chr3_4:50035650-50035669 Msa0504880:CDS 50.0%
AGGGTATGCCCTAGGCTTAA+GGG - chr3_4:50035651-50035670 Msa0504880:CDS 50.0%
GTGGAGATACCCTTAAGCCT+AGG + chr3_4:50035663-50035682 None:intergenic 50.0%
GCAACAGTAGGGTATGCCCT+AGG - chr3_4:50035643-50035662 Msa0504880:CDS 55.0%
GCAACAGTAGGGTATGCCCT+AGG - chr3_4:50035643-50035662 Msa0504880:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 50034891 50036545 50034891 ID=Msa0504880;Name=Msa0504880
chr3_4 mRNA 50034891 50036545 50034891 ID=Msa0504880-mRNA-1;Parent=Msa0504880;Name=Msa0504880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.66|1|1|3|0|421
chr3_4 exon 50036369 50036545 50036369 ID=Msa0504880-mRNA-1:exon:10804;Parent=Msa0504880-mRNA-1
chr3_4 exon 50036016 50036114 50036016 ID=Msa0504880-mRNA-1:exon:10803;Parent=Msa0504880-mRNA-1
chr3_4 exon 50034891 50035880 50034891 ID=Msa0504880-mRNA-1:exon:10802;Parent=Msa0504880-mRNA-1
chr3_4 CDS 50036369 50036545 50036369 ID=Msa0504880-mRNA-1:cds;Parent=Msa0504880-mRNA-1
chr3_4 CDS 50036016 50036114 50036016 ID=Msa0504880-mRNA-1:cds;Parent=Msa0504880-mRNA-1
chr3_4 CDS 50034891 50035880 50034891 ID=Msa0504880-mRNA-1:cds;Parent=Msa0504880-mRNA-1
Gene Sequence

>Msa0504880

ATGGAATTCAACAAGTTTAGAATCAGAAGCTATGAGGGTCAATCAGCTGATAGAGCTCAAGTTGAAAATTTAGAGAGAAAATGTGAGGTAGGACCATCAGAAAGTGTGTTTCTCTTCACAGACACTATGGGTGACCCCATTTGTAGGATTCGAAACAGTCCCTTGTACATGATGCTGTTTAGAACTGCAAATGTGGCCGCAATATATATTGAAGATTTTGAAGTCACTGCAACTGCAATTTCGACTACATCAACTGCATTTTACTATAATAGAAAGGTAGCAGAGCTTGACAATGAATTGGTTGGTGTCATTCAAGGATCTATAAAAGTTGTAACTGTTCAAGGACATCCACCAAAGGATTTGGCAACAGTAGGGTATGCCCTAGGCTTAAGGGTATCTCCACATCATAGAAGAAAAGGGATTGGTTCAAGCCTAGTAAGAACATTAGAAGAATGGTTCATTTCCAATGATGTGGACTATGCATACATGGCAACAGAGAAAGATAATCATGCCTCAGTCAATCTCTTCATGAACAAGTTTAACTACACAAAGTTTAGGACACCATCTATTCTTGTTAACCCTGTGAACCATCACTCATTAAAAATCTCAAACAACATTGAAATATCTAGGTTAAAAATTGAACAAGCTGAATCACTCTATAGAAGATTCATGGGGTCCACAGAGTTTTTTCCTAATGATATAGGAAATATATTAAGGAATAAATTAAGTTTGGGGACATGGATGGCATATTTTAAAGATGATATTAATATTGGGCCTAATGGACAAGTGCCAAATAGTTGGGCTATGCTTAGTGTATGGAATAGTGGTGAGATATTCAAGTTAAAGATAGGAAAAGCACCTTTTTGTTGTTTGTTATACACAAAAAGTTGGTGCTTGATTGATAAAATTTTCCCATGTTTAAAATTGCCTACTTTACCTGATTTCTTTAACCCTTTTGGATTTTATTTTATGTATGGTGTGTATCATGAAGGGCCATTTTCAGGGAAGCTAGTGAAAGCTCTATGTCAATTTGTGCACAATATGGCTAAAGAGAGTAAAGATGAGAAGTGTAAGATTATTGTGACTGAAGTTGGAGGAAGAGATGAACTCAATCATCACATTCCACATTGGAAGTTGCTCTCATGCCCTGAAGATTTGTGGTGCATAAAGGCACTGAAAAATGAAGGACTTTCAATTAATACTTTTCATGAATTAACCAAAATCCCACCTACAAGAGCTCTTTTTGTAGACCCAAGAGAGGTTTAA

Protein sequence

>Msa0504880

MEFNKFRIRSYEGQSADRAQVENLERKCEVGPSESVFLFTDTMGDPICRIRNSPLYMMLFRTANVAAIYIEDFEVTATAISTTSTAFYYNRKVAELDNELVGVIQGSIKVVTVQGHPPKDLATVGYALGLRVSPHHRRKGIGSSLVRTLEEWFISNDVDYAYMATEKDNHASVNLFMNKFNYTKFRTPSILVNPVNHHSLKISNNIEISRLKIEQAESLYRRFMGSTEFFPNDIGNILRNKLSLGTWMAYFKDDINIGPNGQVPNSWAMLSVWNSGEIFKLKIGKAPFCCLLYTKSWCLIDKIFPCLKLPTLPDFFNPFGFYFMYGVYHEGPFSGKLVKALCQFVHNMAKESKDEKCKIIVTEVGGRDELNHHIPHWKLLSCPEDLWCIKALKNEGLSINTFHELTKIPPTRALFVDPREV*