Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505440 | AES69527.1 | 92.276 | 246 | 17 | 1 | 1 | 246 | 1 | 244 | 4.21e-153 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505440 | sp|Q9FJK3|AGL80_ARATH | 43.871 | 155 | 86 | 1 | 1 | 155 | 1 | 154 | 8.27e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505440 | G7IWW4 | 92.276 | 246 | 17 | 1 | 1 | 246 | 1 | 244 | 2.01e-153 | 436 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0505440 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505440 | MtrunA17_Chr3g0106421 | 92.661 | 218 | 14 | 1 | 29 | 246 | 1 | 216 | 2.29e-137 | 384 |
| Msa0505440 | MtrunA17_Chr2g0283941 | 42.017 | 238 | 137 | 1 | 1 | 237 | 1 | 238 | 3.31e-58 | 185 |
| Msa0505440 | MtrunA17_Chr3g0107461 | 47.771 | 157 | 82 | 0 | 1 | 157 | 1 | 157 | 5.14e-43 | 143 |
| Msa0505440 | MtrunA17_Chr3g0107381 | 42.778 | 180 | 92 | 3 | 1 | 176 | 1 | 173 | 7.25e-43 | 145 |
| Msa0505440 | MtrunA17_Chr3g0106501 | 48.889 | 135 | 69 | 0 | 29 | 163 | 1 | 135 | 6.06e-40 | 135 |
| Msa0505440 | MtrunA17_Chr3g0110131 | 36.752 | 234 | 140 | 3 | 1 | 228 | 1 | 232 | 2.87e-39 | 136 |
| Msa0505440 | MtrunA17_Chr4g0014321 | 35.246 | 244 | 131 | 4 | 1 | 236 | 1 | 225 | 3.05e-39 | 135 |
| Msa0505440 | MtrunA17_Chr8g0351751 | 38.095 | 168 | 102 | 1 | 1 | 166 | 1 | 168 | 8.37e-34 | 122 |
| Msa0505440 | MtrunA17_Chr3g0105791 | 43.262 | 141 | 80 | 0 | 29 | 169 | 1 | 141 | 4.90e-33 | 117 |
| Msa0505440 | MtrunA17_Chr4g0031421 | 42.446 | 139 | 80 | 0 | 29 | 167 | 1 | 139 | 5.64e-33 | 117 |
| Msa0505440 | MtrunA17_Chr4g0013041 | 35.714 | 196 | 117 | 3 | 1 | 189 | 1 | 194 | 2.48e-32 | 117 |
| Msa0505440 | MtrunA17_Chr5g0432691 | 38.961 | 154 | 93 | 1 | 1 | 154 | 1 | 153 | 8.09e-32 | 114 |
| Msa0505440 | MtrunA17_Chr4g0014031 | 41.667 | 156 | 91 | 0 | 1 | 156 | 1 | 156 | 2.99e-31 | 115 |
| Msa0505440 | MtrunA17_Chr3g0107351 | 36.306 | 157 | 99 | 1 | 3 | 159 | 2 | 157 | 7.35e-30 | 109 |
| Msa0505440 | MtrunA17_Chr4g0014131 | 41.667 | 156 | 91 | 0 | 1 | 156 | 1 | 156 | 2.20e-29 | 110 |
| Msa0505440 | MtrunA17_Chr2g0296861 | 40.881 | 159 | 93 | 1 | 1 | 159 | 1 | 158 | 6.38e-29 | 107 |
| Msa0505440 | MtrunA17_Chr2g0296831 | 46.281 | 121 | 65 | 0 | 1 | 121 | 1 | 121 | 2.73e-28 | 104 |
| Msa0505440 | MtrunA17_Chr3g0107361 | 34.395 | 157 | 102 | 1 | 3 | 159 | 2 | 157 | 1.62e-27 | 103 |
| Msa0505440 | MtrunA17_Chr3g0107331 | 35.849 | 159 | 101 | 1 | 3 | 161 | 2 | 159 | 2.08e-27 | 103 |
| Msa0505440 | MtrunA17_Chr4g0014121 | 39.103 | 156 | 95 | 0 | 1 | 156 | 29 | 184 | 1.33e-26 | 102 |
| Msa0505440 | MtrunA17_Chr3g0107341 | 33.758 | 157 | 103 | 1 | 3 | 159 | 2 | 157 | 4.83e-26 | 99.8 |
| Msa0505440 | MtrunA17_Chr5g0420351 | 34.395 | 157 | 101 | 2 | 1 | 157 | 1 | 155 | 4.07e-25 | 97.1 |
| Msa0505440 | MtrunA17_Chr1g0188681 | 35.802 | 162 | 92 | 4 | 1 | 157 | 1 | 155 | 3.20e-24 | 94.7 |
| Msa0505440 | MtrunA17_Chr1g0197321 | 33.121 | 157 | 104 | 1 | 1 | 157 | 1 | 156 | 1.97e-22 | 90.1 |
| Msa0505440 | MtrunA17_Chr1g0188651 | 38.854 | 157 | 86 | 3 | 1 | 154 | 1 | 150 | 3.45e-22 | 89.4 |
| Msa0505440 | MtrunA17_Chr1g0197261 | 32.704 | 159 | 101 | 4 | 1 | 157 | 1 | 155 | 2.82e-21 | 87.0 |
| Msa0505440 | MtrunA17_Chr1g0197461 | 36.076 | 158 | 97 | 3 | 3 | 159 | 2 | 156 | 3.44e-21 | 86.7 |
| Msa0505440 | MtrunA17_Chr1g0193311 | 36.306 | 157 | 98 | 2 | 1 | 157 | 1 | 155 | 3.78e-21 | 86.7 |
| Msa0505440 | MtrunA17_Chr7g0218151 | 36.943 | 157 | 97 | 2 | 1 | 157 | 1 | 155 | 5.08e-21 | 86.3 |
| Msa0505440 | MtrunA17_Chr1g0188661 | 36.709 | 158 | 96 | 3 | 1 | 157 | 1 | 155 | 1.06e-20 | 85.5 |
| Msa0505440 | MtrunA17_Chr4g0012761 | 36.306 | 157 | 98 | 2 | 1 | 157 | 1 | 155 | 1.85e-20 | 85.1 |
| Msa0505440 | MtrunA17_Chr6g0457851 | 26.087 | 230 | 148 | 6 | 1 | 224 | 11 | 224 | 1.57e-18 | 83.6 |
| Msa0505440 | MtrunA17_Chr4g0008701 | 32.479 | 117 | 79 | 0 | 3 | 119 | 6 | 122 | 8.55e-17 | 79.3 |
| Msa0505440 | MtrunA17_Chr7g0267601 | 29.915 | 117 | 82 | 0 | 3 | 119 | 6 | 122 | 1.50e-15 | 75.5 |
| Msa0505440 | MtrunA17_Chr1g0212151 | 28.302 | 159 | 99 | 4 | 1 | 153 | 1 | 150 | 1.77e-15 | 74.7 |
| Msa0505440 | MtrunA17_Chr3g0128721 | 30.357 | 112 | 75 | 1 | 3 | 114 | 6 | 114 | 4.57e-14 | 71.2 |
| Msa0505440 | MtrunA17_Chr6g0449851 | 34.951 | 103 | 60 | 3 | 1 | 97 | 1 | 102 | 2.61e-13 | 68.2 |
| Msa0505440 | MtrunA17_Chr6g0449861 | 30.172 | 116 | 74 | 3 | 1 | 110 | 9 | 123 | 2.90e-11 | 62.4 |
| Msa0505440 | MtrunA17_Chr8g0351051 | 24.017 | 229 | 152 | 8 | 1 | 226 | 1 | 210 | 5.02e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505440 | AT5G48670.1 | 43.871 | 155 | 86 | 1 | 1 | 155 | 1 | 154 | 8.41e-29 | 111 |
| Msa0505440 | AT3G05860.2 | 36.649 | 191 | 106 | 4 | 1 | 189 | 1 | 178 | 9.09e-29 | 108 |
| Msa0505440 | AT3G05860.3 | 34.921 | 189 | 115 | 3 | 1 | 187 | 1 | 183 | 1.01e-28 | 109 |
| Msa0505440 | AT3G05860.1 | 36.649 | 191 | 106 | 4 | 1 | 189 | 1 | 178 | 1.55e-28 | 109 |
| Msa0505440 | AT1G65300.1 | 32.579 | 221 | 136 | 5 | 3 | 211 | 2 | 221 | 6.61e-26 | 102 |
| Msa0505440 | AT1G65330.1 | 43.478 | 115 | 65 | 0 | 3 | 117 | 2 | 116 | 2.60e-24 | 98.6 |
| Msa0505440 | AT5G26650.1 | 32.338 | 201 | 111 | 6 | 4 | 202 | 2 | 179 | 3.50e-22 | 94.0 |
| Msa0505440 | AT5G27960.1 | 28.571 | 196 | 128 | 3 | 4 | 187 | 2 | 197 | 3.10e-21 | 90.9 |
| Msa0505440 | AT5G27810.1 | 46.067 | 89 | 48 | 0 | 29 | 117 | 1 | 89 | 5.81e-20 | 82.8 |
| Msa0505440 | AT2G28700.1 | 34.074 | 135 | 86 | 1 | 1 | 135 | 1 | 132 | 2.41e-19 | 85.9 |
| Msa0505440 | AT5G26630.1 | 34.395 | 157 | 98 | 2 | 1 | 155 | 1 | 154 | 7.59e-19 | 82.4 |
| Msa0505440 | AT1G31640.1 | 35.897 | 117 | 70 | 2 | 3 | 117 | 2 | 115 | 7.91e-17 | 79.7 |
| Msa0505440 | AT5G06500.1 | 29.560 | 159 | 104 | 2 | 1 | 156 | 1 | 154 | 3.34e-16 | 75.9 |
| Msa0505440 | AT5G26580.1 | 26.848 | 257 | 149 | 9 | 1 | 232 | 1 | 243 | 4.76e-16 | 76.6 |
| Msa0505440 | AT1G31630.1 | 33.043 | 115 | 76 | 1 | 3 | 117 | 2 | 115 | 7.80e-16 | 76.3 |
| Msa0505440 | AT1G22590.2 | 33.945 | 109 | 72 | 0 | 1 | 109 | 1 | 109 | 3.58e-15 | 71.2 |
| Msa0505440 | AT5G55690.1 | 29.375 | 160 | 90 | 4 | 1 | 153 | 1 | 144 | 1.06e-14 | 72.0 |
| Msa0505440 | AT5G55690.2 | 29.375 | 160 | 90 | 4 | 1 | 153 | 1 | 144 | 1.06e-14 | 72.0 |
| Msa0505440 | AT2G03060.3 | 31.061 | 132 | 77 | 3 | 1 | 132 | 1 | 118 | 2.10e-12 | 66.2 |
| Msa0505440 | AT2G03060.7 | 31.061 | 132 | 77 | 3 | 1 | 132 | 1 | 118 | 2.10e-12 | 66.2 |
| Msa0505440 | AT2G03060.1 | 31.061 | 132 | 77 | 3 | 1 | 132 | 1 | 118 | 2.10e-12 | 66.2 |
| Msa0505440 | AT2G03060.2 | 31.061 | 132 | 77 | 3 | 1 | 132 | 1 | 118 | 2.13e-12 | 66.2 |
| Msa0505440 | AT3G18650.1 | 43.421 | 76 | 41 | 2 | 15 | 89 | 30 | 104 | 3.54e-12 | 65.9 |
| Msa0505440 | AT2G40210.1 | 34.000 | 100 | 66 | 0 | 1 | 100 | 1 | 100 | 9.21e-12 | 64.3 |
| Msa0505440 | AT5G39750.1 | 23.729 | 236 | 140 | 9 | 24 | 223 | 31 | 262 | 2.19e-11 | 63.2 |
Find 54 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGAGACTAACATGAATTA+TGG | 0.238809 | 3_4:+50916913 | Msa0505440:CDS |
| GATTTCGACCCAAATGGATT+TGG | 0.290310 | 3_4:+50917006 | Msa0505440:CDS |
| GCCCATGAGCAGGTTGTAAA+TGG | 0.293188 | 3_4:+50916778 | Msa0505440:CDS |
| TGGTGGATCTATATAGCTTT+TGG | 0.314881 | 3_4:+50916545 | Msa0505440:CDS |
| TTACAACCTGCTCATGGGCT+TGG | 0.336276 | 3_4:-50916774 | None:intergenic |
| ACCATGGTCAAGCAGAAGTT+TGG | 0.357178 | 3_4:+50916449 | Msa0505440:CDS |
| TAGATTGATCCAAATCCATT+TGG | 0.359545 | 3_4:-50917015 | None:intergenic |
| TGCTTTCTCATACTTCTCTC+TGG | 0.372187 | 3_4:-50916587 | None:intergenic |
| TACAACCTGCTCATGGGCTT+GGG | 0.383623 | 3_4:-50916773 | None:intergenic |
| TATAAAGGATGGAGATTTGT+TGG | 0.386723 | 3_4:+50916810 | Msa0505440:CDS |
| AAATGGAGCTGAAGCTATAA+AGG | 0.393018 | 3_4:+50916795 | Msa0505440:CDS |
| GAGTGATGAGCAACTACCTA+TGG | 0.403523 | 3_4:+50916942 | Msa0505440:CDS |
| TAATCAGAGGTTGGATTCAA+TGG | 0.415635 | 3_4:+50916747 | Msa0505440:CDS |
| GAAGTATGAGAAAGCAATGA+TGG | 0.430824 | 3_4:+50916594 | Msa0505440:CDS |
| AGATTGATCCAAATCCATTT+GGG | 0.442780 | 3_4:-50917014 | None:intergenic |
| CTCCATTTACAACCTGCTCA+TGG | 0.464952 | 3_4:-50916780 | None:intergenic |
| GAGGTATGTGTAATAATCTA+TGG | 0.465342 | 3_4:+50916421 | Msa0505440:CDS |
| ATGAATTGAGCACCCTTTGT+GGG | 0.482929 | 3_4:+50916395 | Msa0505440:CDS |
| GAAGGAAGTTAATCAGAGGT+TGG | 0.490639 | 3_4:+50916738 | Msa0505440:CDS |
| TCAAAATCAAAATCATCAAA+TGG | 0.490798 | 3_4:-50916979 | None:intergenic |
| AATGAATTGAGCACCCTTTG+TGG | 0.491238 | 3_4:+50916394 | Msa0505440:CDS |
| TTTAATTGATGACAATATGA+AGG | 0.493575 | 3_4:+50916720 | Msa0505440:CDS |
| GAGCACCCTTTGTGGGGTAG+AGG | 0.494310 | 3_4:+50916402 | Msa0505440:CDS |
| TTTGAGCTTCTTTCTGCCCA+TGG | 0.497356 | 3_4:-50914983 | None:intergenic |
| ACATAATCAATAAGTCGAAA+CGG | 0.519099 | 3_4:+50915013 | Msa0505440:CDS |
| TCCATTTACAACCTGCTCAT+GGG | 0.519104 | 3_4:-50916779 | None:intergenic |
| CCTACTCGTAACTATAATGT+TGG | 0.540983 | 3_4:+50916661 | Msa0505440:CDS |
| AGGAGATACACGGGATAACA+TGG | 0.551769 | 3_4:+50916867 | Msa0505440:CDS |
| ACATACCTCTACCCCACAAA+GGG | 0.555523 | 3_4:-50916407 | None:intergenic |
| GGTAACCCAAGCCCATGAGC+AGG | 0.557566 | 3_4:+50916768 | Msa0505440:CDS |
| GAAGTTTGGCCATCCGCGAT+AGG | 0.559712 | 3_4:+50916463 | Msa0505440:CDS |
| GGAGCTGAAGCTATAAAGGA+TGG | 0.563914 | 3_4:+50916799 | Msa0505440:CDS |
| CGCTGAGTGGAGGAGATACA+CGG | 0.569700 | 3_4:+50916857 | Msa0505440:CDS |
| GCCAAACTTCTGCTTGACCA+TGG | 0.570779 | 3_4:-50916450 | None:intergenic |
| AGTGATGAGCAACTACCTAT+GGG | 0.580296 | 3_4:+50916943 | Msa0505440:CDS |
| TCATGTTAGTCTCATAACCA+TGG | 0.584822 | 3_4:-50916906 | None:intergenic |
| CATGTTAGTCTCATAACCAT+GGG | 0.600840 | 3_4:-50916905 | None:intergenic |
| GCTCAAGTGCCGCTGAGTGG+AGG | 0.602451 | 3_4:+50916847 | Msa0505440:CDS |
| AATCATCAAATGGTGGCATG+AGG | 0.619303 | 3_4:-50916969 | None:intergenic |
| ATTGCTCAAGTGCCGCTGAG+TGG | 0.623375 | 3_4:+50916844 | Msa0505440:CDS |
| AAATCAAAATCATCAAATGG+TGG | 0.629108 | 3_4:-50916976 | None:intergenic |
| CACATACCTCTACCCCACAA+AGG | 0.629470 | 3_4:-50916408 | None:intergenic |
| TACACGGGATAACATGGATG+AGG | 0.629602 | 3_4:+50916873 | Msa0505440:CDS |
| TGAATTGAGCACCCTTTGTG+GGG | 0.632793 | 3_4:+50916396 | Msa0505440:CDS |
| CCAACATTATAGTTACGAGT+AGG | 0.633928 | 3_4:-50916661 | None:intergenic |
| ATAATCTATGGTGAAAACCA+TGG | 0.637538 | 3_4:+50916433 | Msa0505440:CDS |
| CGTTCTAGTCCTATCGCGGA+TGG | 0.640692 | 3_4:-50916472 | None:intergenic |
| AATCAATAAGTCGAAACGGA+TGG | 0.645843 | 3_4:+50915017 | Msa0505440:CDS |
| GGTGGCATGAGGAAGCCCAT+AGG | 0.647819 | 3_4:-50916958 | None:intergenic |
| ATATGAAGGAAGTTAATCAG+AGG | 0.681452 | 3_4:+50916734 | Msa0505440:CDS |
| GATGAGGTTGCTGATACCCA+TGG | 0.682185 | 3_4:+50916889 | Msa0505440:CDS |
| CACACGTTCTAGTCCTATCG+CGG | 0.694193 | 3_4:-50916476 | None:intergenic |
| GCTGAGTGGAGGAGATACAC+GGG | 0.698908 | 3_4:+50916858 | Msa0505440:CDS |
| CGTGTATCTCCTCCACTCAG+CGG | 0.724307 | 3_4:-50916856 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTATTTATTTATAA+TGG | - | chr3_4:50915301-50915320 | None:intergenic | 0.0% |
| !!! | AATTTTTTATTTATTTATAA+TGG | - | chr3_4:50915301-50915320 | None:intergenic | 0.0% |
| !!! | ATTGTTTTTATTATACAATT+AGG | + | chr3_4:50915392-50915411 | Msa0505440:intron | 10.0% |
| !!! | TTGTTTTTATTATACAATTA+GGG | + | chr3_4:50915393-50915412 | Msa0505440:intron | 10.0% |
| !!! | TTTTTATCTTCAAAATAATA+GGG | - | chr3_4:50915446-50915465 | None:intergenic | 10.0% |
| !!! | TTTTTTATCTTCAAAATAAT+AGG | - | chr3_4:50915447-50915466 | None:intergenic | 10.0% |
| !!! | TTATATATTTATTTTGAAAG+AGG | - | chr3_4:50915740-50915759 | None:intergenic | 10.0% |
| !! | CATACAAAATATAATATTAT+TGG | - | chr3_4:50915938-50915957 | None:intergenic | 10.0% |
| !! | AAATTATATATAACTGAATA+GGG | - | chr3_4:50916337-50916356 | None:intergenic | 10.0% |
| !! | TAAATTATATATAACTGAAT+AGG | - | chr3_4:50916338-50916357 | None:intergenic | 10.0% |
| !!! | TTATATATATGTTTTTCAAT+AGG | + | chr3_4:50916355-50916374 | Msa0505440:intron | 10.0% |
| !!! | ATTGTTTTTATTATACAATT+AGG | + | chr3_4:50915392-50915411 | Msa0505440:intron | 10.0% |
| !!! | TTGTTTTTATTATACAATTA+GGG | + | chr3_4:50915393-50915412 | Msa0505440:intron | 10.0% |
| !!! | TTTTTATCTTCAAAATAATA+GGG | - | chr3_4:50915446-50915465 | None:intergenic | 10.0% |
| !!! | TTTTTTATCTTCAAAATAAT+AGG | - | chr3_4:50915447-50915466 | None:intergenic | 10.0% |
| !!! | TTATATATTTATTTTGAAAG+AGG | - | chr3_4:50915740-50915759 | None:intergenic | 10.0% |
| !! | CATACAAAATATAATATTAT+TGG | - | chr3_4:50915938-50915957 | None:intergenic | 10.0% |
| !! | AAATTATATATAACTGAATA+GGG | - | chr3_4:50916337-50916356 | None:intergenic | 10.0% |
| !! | TAAATTATATATAACTGAAT+AGG | - | chr3_4:50916338-50916357 | None:intergenic | 10.0% |
| !!! | TTATATATATGTTTTTCAAT+AGG | + | chr3_4:50916355-50916374 | Msa0505440:intron | 10.0% |
| !!! | TCAAAGATTTTAATTACAAT+GGG | - | chr3_4:50915152-50915171 | None:intergenic | 15.0% |
| !!! | ATCAAAGATTTTAATTACAA+TGG | - | chr3_4:50915153-50915172 | None:intergenic | 15.0% |
| !! | TAATTAAAATCTTTGATCTT+CGG | + | chr3_4:50915156-50915175 | Msa0505440:intron | 15.0% |
| !! | AAAATTATTACTACCATTAA+TGG | + | chr3_4:50915527-50915546 | Msa0505440:intron | 15.0% |
| !!! | TCTTTCATTTTTTTCAAAAA+CGG | + | chr3_4:50915557-50915576 | Msa0505440:intron | 15.0% |
| !! | CATATAAAATCAATTATTGT+TGG | + | chr3_4:50915655-50915674 | Msa0505440:intron | 15.0% |
| !! | TAATGGAAAAAATAAAATGT+TGG | + | chr3_4:50916045-50916064 | Msa0505440:intron | 15.0% |
| !! | AATAAAAAACATCAAAATCA+TGG | - | chr3_4:50916078-50916097 | None:intergenic | 15.0% |
| !!! | TCAAAGATTTTAATTACAAT+GGG | - | chr3_4:50915152-50915171 | None:intergenic | 15.0% |
| !!! | ATCAAAGATTTTAATTACAA+TGG | - | chr3_4:50915153-50915172 | None:intergenic | 15.0% |
| !! | TAATTAAAATCTTTGATCTT+CGG | + | chr3_4:50915156-50915175 | Msa0505440:intron | 15.0% |
| !! | AAAATTATTACTACCATTAA+TGG | + | chr3_4:50915527-50915546 | Msa0505440:intron | 15.0% |
| !!! | TCTTTCATTTTTTTCAAAAA+CGG | + | chr3_4:50915557-50915576 | Msa0505440:intron | 15.0% |
| !! | CATATAAAATCAATTATTGT+TGG | + | chr3_4:50915655-50915674 | Msa0505440:intron | 15.0% |
| !! | TAATGGAAAAAATAAAATGT+TGG | + | chr3_4:50916045-50916064 | Msa0505440:intron | 15.0% |
| !! | AATAAAAAACATCAAAATCA+TGG | - | chr3_4:50916078-50916097 | None:intergenic | 15.0% |
| !! | ACATTAAAAAAAAGAACAGA+AGG | + | chr3_4:50915042-50915061 | Msa0505440:CDS | 20.0% |
| !!! | GATGAATATTTTTTCTACTT+TGG | - | chr3_4:50915352-50915371 | None:intergenic | 20.0% |
| !! | AAAATAATAGGGTAAATCAT+TGG | - | chr3_4:50915435-50915454 | None:intergenic | 20.0% |
| !! | AGATAAAAAAAGTAAAATCG+TGG | + | chr3_4:50915457-50915476 | Msa0505440:intron | 20.0% |
| !! | GAAAGATAAAAAACCATTAA+TGG | - | chr3_4:50915543-50915562 | None:intergenic | 20.0% |
| !!! | CTTTCATTTTTTTCAAAAAC+GGG | + | chr3_4:50915558-50915577 | Msa0505440:intron | 20.0% |
| !!! | ATCATTTTATGAAAACTTCT+AGG | - | chr3_4:50915913-50915932 | None:intergenic | 20.0% |
| !!! | TTGATAAAATGTTAAGTTGT+TGG | + | chr3_4:50916106-50916125 | Msa0505440:intron | 20.0% |
| !! | ATAAAAAAATTGCACTTGTT+TGG | + | chr3_4:50916158-50916177 | Msa0505440:intron | 20.0% |
| !!! | TTTAATTGATGACAATATGA+AGG | + | chr3_4:50916720-50916739 | Msa0505440:CDS | 20.0% |
| !! | TCAAAATCAAAATCATCAAA+TGG | - | chr3_4:50916982-50917001 | None:intergenic | 20.0% |
| !! | ACATTAAAAAAAAGAACAGA+AGG | + | chr3_4:50915042-50915061 | Msa0505440:CDS | 20.0% |
| !!! | GATGAATATTTTTTCTACTT+TGG | - | chr3_4:50915352-50915371 | None:intergenic | 20.0% |
| !! | AAAATAATAGGGTAAATCAT+TGG | - | chr3_4:50915435-50915454 | None:intergenic | 20.0% |
| !! | AGATAAAAAAAGTAAAATCG+TGG | + | chr3_4:50915457-50915476 | Msa0505440:intron | 20.0% |
| !! | GAAAGATAAAAAACCATTAA+TGG | - | chr3_4:50915543-50915562 | None:intergenic | 20.0% |
| !!! | CTTTCATTTTTTTCAAAAAC+GGG | + | chr3_4:50915558-50915577 | Msa0505440:intron | 20.0% |
| !!! | ATCATTTTATGAAAACTTCT+AGG | - | chr3_4:50915913-50915932 | None:intergenic | 20.0% |
| !!! | TTGATAAAATGTTAAGTTGT+TGG | + | chr3_4:50916106-50916125 | Msa0505440:intron | 20.0% |
| !! | ATAAAAAAATTGCACTTGTT+TGG | + | chr3_4:50916158-50916177 | Msa0505440:intron | 20.0% |
| !!! | TTTAATTGATGACAATATGA+AGG | + | chr3_4:50916720-50916739 | Msa0505440:CDS | 20.0% |
| !! | TCAAAATCAAAATCATCAAA+TGG | - | chr3_4:50916982-50917001 | None:intergenic | 20.0% |
| ! | ACATAATCAATAAGTCGAAA+CGG | + | chr3_4:50915013-50915032 | Msa0505440:CDS | 25.0% |
| ! | GCATGATTTAATTGAAACTA+AGG | - | chr3_4:50915084-50915103 | None:intergenic | 25.0% |
| ! | ATAAGTTCTATAGTTACCTT+GGG | - | chr3_4:50915189-50915208 | None:intergenic | 25.0% |
| ! | TATAAGTTCTATAGTTACCT+TGG | - | chr3_4:50915190-50915209 | None:intergenic | 25.0% |
| !!! | GAAAAATTAGTTTTACAGTG+GGG | - | chr3_4:50915222-50915241 | None:intergenic | 25.0% |
| !!! | CGAAAAATTAGTTTTACAGT+GGG | - | chr3_4:50915223-50915242 | None:intergenic | 25.0% |
| !!! | ACGAAAAATTAGTTTTACAG+TGG | - | chr3_4:50915224-50915243 | None:intergenic | 25.0% |
| ! | ATGTAACTATTTCATCAACA+TGG | - | chr3_4:50915270-50915289 | None:intergenic | 25.0% |
| ! | TAAAAAGAATGAAAGTCTTG+TGG | - | chr3_4:50915490-50915509 | None:intergenic | 25.0% |
| ! | TTAGATATGAATACCTATAG+CGG | + | chr3_4:50916009-50916028 | Msa0505440:intron | 25.0% |
| !! | ATAAAATGTTAAGTTGTTGG+TGG | + | chr3_4:50916109-50916128 | Msa0505440:intron | 25.0% |
| ! | TACTTCGTAAAAAATGTTTG+AGG | + | chr3_4:50916203-50916222 | Msa0505440:intron | 25.0% |
| ! | AATAGAAAACCTCTTATGTT+TGG | + | chr3_4:50916297-50916316 | Msa0505440:intron | 25.0% |
| ! | ATAGAAAACCTCTTATGTTT+GGG | + | chr3_4:50916298-50916317 | Msa0505440:intron | 25.0% |
| ! | AAAATTTACCCAAACATAAG+AGG | - | chr3_4:50916309-50916328 | None:intergenic | 25.0% |
| ! | ACTCAAAAGAAACAAAAAGA+TGG | + | chr3_4:50916525-50916544 | Msa0505440:CDS | 25.0% |
| ! | TATGAGACTAACATGAATTA+TGG | + | chr3_4:50916913-50916932 | Msa0505440:CDS | 25.0% |
| ! | AAATCAAAATCATCAAATGG+TGG | - | chr3_4:50916979-50916998 | None:intergenic | 25.0% |
| ! | ACATAATCAATAAGTCGAAA+CGG | + | chr3_4:50915013-50915032 | Msa0505440:CDS | 25.0% |
| ! | GCATGATTTAATTGAAACTA+AGG | - | chr3_4:50915084-50915103 | None:intergenic | 25.0% |
| ! | ATAAGTTCTATAGTTACCTT+GGG | - | chr3_4:50915189-50915208 | None:intergenic | 25.0% |
| ! | TATAAGTTCTATAGTTACCT+TGG | - | chr3_4:50915190-50915209 | None:intergenic | 25.0% |
| !!! | GAAAAATTAGTTTTACAGTG+GGG | - | chr3_4:50915222-50915241 | None:intergenic | 25.0% |
| !!! | CGAAAAATTAGTTTTACAGT+GGG | - | chr3_4:50915223-50915242 | None:intergenic | 25.0% |
| !!! | ACGAAAAATTAGTTTTACAG+TGG | - | chr3_4:50915224-50915243 | None:intergenic | 25.0% |
| ! | ATGTAACTATTTCATCAACA+TGG | - | chr3_4:50915270-50915289 | None:intergenic | 25.0% |
| ! | TAAAAAGAATGAAAGTCTTG+TGG | - | chr3_4:50915490-50915509 | None:intergenic | 25.0% |
| ! | TTAGATATGAATACCTATAG+CGG | + | chr3_4:50916009-50916028 | Msa0505440:intron | 25.0% |
| !! | ATAAAATGTTAAGTTGTTGG+TGG | + | chr3_4:50916109-50916128 | Msa0505440:intron | 25.0% |
| ! | TACTTCGTAAAAAATGTTTG+AGG | + | chr3_4:50916203-50916222 | Msa0505440:intron | 25.0% |
| ! | AATAGAAAACCTCTTATGTT+TGG | + | chr3_4:50916297-50916316 | Msa0505440:intron | 25.0% |
| ! | ATAGAAAACCTCTTATGTTT+GGG | + | chr3_4:50916298-50916317 | Msa0505440:intron | 25.0% |
| ! | AAAATTTACCCAAACATAAG+AGG | - | chr3_4:50916309-50916328 | None:intergenic | 25.0% |
| ! | ACTCAAAAGAAACAAAAAGA+TGG | + | chr3_4:50916525-50916544 | Msa0505440:CDS | 25.0% |
| ! | TATGAGACTAACATGAATTA+TGG | + | chr3_4:50916913-50916932 | Msa0505440:CDS | 25.0% |
| ! | AAATCAAAATCATCAAATGG+TGG | - | chr3_4:50916979-50916998 | None:intergenic | 25.0% |
| ATAATAGGGTAAATCATTGG+TGG | - | chr3_4:50915432-50915451 | None:intergenic | 30.0% | |
| ! | TCGTAAAAAATGTTTGAGGT+TGG | + | chr3_4:50916207-50916226 | Msa0505440:intron | 30.0% |
| GAGGTATGTGTAATAATCTA+TGG | + | chr3_4:50916421-50916440 | Msa0505440:CDS | 30.0% | |
| ATAATCTATGGTGAAAACCA+TGG | + | chr3_4:50916433-50916452 | Msa0505440:CDS | 30.0% | |
| CAAAAGAAACAAAAAGATGG+TGG | + | chr3_4:50916528-50916547 | Msa0505440:CDS | 30.0% | |
| ! | TATATAGCTTTTGGATGCAA+AGG | + | chr3_4:50916554-50916573 | Msa0505440:CDS | 30.0% |
| ATATGAAGGAAGTTAATCAG+AGG | + | chr3_4:50916734-50916753 | Msa0505440:CDS | 30.0% | |
| TATAAAGGATGGAGATTTGT+TGG | + | chr3_4:50916810-50916829 | Msa0505440:CDS | 30.0% | |
| AGATTGATCCAAATCCATTT+GGG | - | chr3_4:50917017-50917036 | None:intergenic | 30.0% | |
| TAGATTGATCCAAATCCATT+TGG | - | chr3_4:50917018-50917037 | None:intergenic | 30.0% | |
| ATAATAGGGTAAATCATTGG+TGG | - | chr3_4:50915432-50915451 | None:intergenic | 30.0% | |
| ! | TCGTAAAAAATGTTTGAGGT+TGG | + | chr3_4:50916207-50916226 | Msa0505440:intron | 30.0% |
| GAGGTATGTGTAATAATCTA+TGG | + | chr3_4:50916421-50916440 | Msa0505440:CDS | 30.0% | |
| ATAATCTATGGTGAAAACCA+TGG | + | chr3_4:50916433-50916452 | Msa0505440:CDS | 30.0% | |
| CAAAAGAAACAAAAAGATGG+TGG | + | chr3_4:50916528-50916547 | Msa0505440:CDS | 30.0% | |
| ! | TATATAGCTTTTGGATGCAA+AGG | + | chr3_4:50916554-50916573 | Msa0505440:CDS | 30.0% |
| ATATGAAGGAAGTTAATCAG+AGG | + | chr3_4:50916734-50916753 | Msa0505440:CDS | 30.0% | |
| TATAAAGGATGGAGATTTGT+TGG | + | chr3_4:50916810-50916829 | Msa0505440:CDS | 30.0% | |
| AGATTGATCCAAATCCATTT+GGG | - | chr3_4:50917017-50917036 | None:intergenic | 30.0% | |
| TAGATTGATCCAAATCCATT+TGG | - | chr3_4:50917018-50917037 | None:intergenic | 30.0% | |
| AATCAATAAGTCGAAACGGA+TGG | + | chr3_4:50915017-50915036 | Msa0505440:CDS | 35.0% | |
| CTATAGAACTTATACCCTTG+AGG | + | chr3_4:50915196-50915215 | Msa0505440:intron | 35.0% | |
| ! | TTTTCGTCGACATACATGAT+TGG | + | chr3_4:50915237-50915256 | Msa0505440:intron | 35.0% |
| ! | TTTTCAAAAACGGGCAAAGT+CGG | + | chr3_4:50915567-50915586 | Msa0505440:intron | 35.0% |
| ATATGCACTCTCGTTCAATT+TGG | + | chr3_4:50915850-50915869 | Msa0505440:intron | 35.0% | |
| !! | TGGTGGATCTATATAGCTTT+TGG | + | chr3_4:50916545-50916564 | Msa0505440:CDS | 35.0% |
| GAAGTATGAGAAAGCAATGA+TGG | + | chr3_4:50916594-50916613 | Msa0505440:CDS | 35.0% | |
| CCAACATTATAGTTACGAGT+AGG | - | chr3_4:50916664-50916683 | None:intergenic | 35.0% | |
| CCTACTCGTAACTATAATGT+TGG | + | chr3_4:50916661-50916680 | Msa0505440:CDS | 35.0% | |
| TAATCAGAGGTTGGATTCAA+TGG | + | chr3_4:50916747-50916766 | Msa0505440:CDS | 35.0% | |
| AAATGGAGCTGAAGCTATAA+AGG | + | chr3_4:50916795-50916814 | Msa0505440:CDS | 35.0% | |
| ! | CATGTTAGTCTCATAACCAT+GGG | - | chr3_4:50916908-50916927 | None:intergenic | 35.0% |
| ! | TCATGTTAGTCTCATAACCA+TGG | - | chr3_4:50916909-50916928 | None:intergenic | 35.0% |
| !!! | GATTTTGATTTCGACCCAAA+TGG | + | chr3_4:50917000-50917019 | Msa0505440:CDS | 35.0% |
| AATCAATAAGTCGAAACGGA+TGG | + | chr3_4:50915017-50915036 | Msa0505440:CDS | 35.0% | |
| CTATAGAACTTATACCCTTG+AGG | + | chr3_4:50915196-50915215 | Msa0505440:intron | 35.0% | |
| ! | TTTTCGTCGACATACATGAT+TGG | + | chr3_4:50915237-50915256 | Msa0505440:intron | 35.0% |
| ! | TTTTCAAAAACGGGCAAAGT+CGG | + | chr3_4:50915567-50915586 | Msa0505440:intron | 35.0% |
| ATATGCACTCTCGTTCAATT+TGG | + | chr3_4:50915850-50915869 | Msa0505440:intron | 35.0% | |
| !! | TGGTGGATCTATATAGCTTT+TGG | + | chr3_4:50916545-50916564 | Msa0505440:CDS | 35.0% |
| GAAGTATGAGAAAGCAATGA+TGG | + | chr3_4:50916594-50916613 | Msa0505440:CDS | 35.0% | |
| CCAACATTATAGTTACGAGT+AGG | - | chr3_4:50916664-50916683 | None:intergenic | 35.0% | |
| CCTACTCGTAACTATAATGT+TGG | + | chr3_4:50916661-50916680 | Msa0505440:CDS | 35.0% | |
| TAATCAGAGGTTGGATTCAA+TGG | + | chr3_4:50916747-50916766 | Msa0505440:CDS | 35.0% | |
| AAATGGAGCTGAAGCTATAA+AGG | + | chr3_4:50916795-50916814 | Msa0505440:CDS | 35.0% | |
| ! | CATGTTAGTCTCATAACCAT+GGG | - | chr3_4:50916908-50916927 | None:intergenic | 35.0% |
| ! | TCATGTTAGTCTCATAACCA+TGG | - | chr3_4:50916909-50916928 | None:intergenic | 35.0% |
| !!! | GATTTTGATTTCGACCCAAA+TGG | + | chr3_4:50917000-50917019 | Msa0505440:CDS | 35.0% |
| CACTCTCGTTCAATTTGGTT+TGG | + | chr3_4:50915855-50915874 | Msa0505440:intron | 40.0% | |
| AATGAATTGAGCACCCTTTG+TGG | + | chr3_4:50916394-50916413 | Msa0505440:CDS | 40.0% | |
| ATGAATTGAGCACCCTTTGT+GGG | + | chr3_4:50916395-50916414 | Msa0505440:CDS | 40.0% | |
| TGCTTTCTCATACTTCTCTC+TGG | - | chr3_4:50916590-50916609 | None:intergenic | 40.0% | |
| GAAGGAAGTTAATCAGAGGT+TGG | + | chr3_4:50916738-50916757 | Msa0505440:CDS | 40.0% | |
| TCCATTTACAACCTGCTCAT+GGG | - | chr3_4:50916782-50916801 | None:intergenic | 40.0% | |
| AGTGATGAGCAACTACCTAT+GGG | + | chr3_4:50916943-50916962 | Msa0505440:CDS | 40.0% | |
| AATCATCAAATGGTGGCATG+AGG | - | chr3_4:50916972-50916991 | None:intergenic | 40.0% | |
| ! | GATTTCGACCCAAATGGATT+TGG | + | chr3_4:50917006-50917025 | Msa0505440:CDS | 40.0% |
| CACTCTCGTTCAATTTGGTT+TGG | + | chr3_4:50915855-50915874 | Msa0505440:intron | 40.0% | |
| AATGAATTGAGCACCCTTTG+TGG | + | chr3_4:50916394-50916413 | Msa0505440:CDS | 40.0% | |
| ATGAATTGAGCACCCTTTGT+GGG | + | chr3_4:50916395-50916414 | Msa0505440:CDS | 40.0% | |
| TGCTTTCTCATACTTCTCTC+TGG | - | chr3_4:50916590-50916609 | None:intergenic | 40.0% | |
| GAAGGAAGTTAATCAGAGGT+TGG | + | chr3_4:50916738-50916757 | Msa0505440:CDS | 40.0% | |
| TCCATTTACAACCTGCTCAT+GGG | - | chr3_4:50916782-50916801 | None:intergenic | 40.0% | |
| AGTGATGAGCAACTACCTAT+GGG | + | chr3_4:50916943-50916962 | Msa0505440:CDS | 40.0% | |
| AATCATCAAATGGTGGCATG+AGG | - | chr3_4:50916972-50916991 | None:intergenic | 40.0% | |
| ! | GATTTCGACCCAAATGGATT+TGG | + | chr3_4:50917006-50917025 | Msa0505440:CDS | 40.0% |
| GTAATGACAGTGACCGCTAT+AGG | - | chr3_4:50916025-50916044 | None:intergenic | 45.0% | |
| GCGGTCACTGTCATTACTAA+TGG | + | chr3_4:50916028-50916047 | Msa0505440:intron | 45.0% | |
| TGAATTGAGCACCCTTTGTG+GGG | + | chr3_4:50916396-50916415 | Msa0505440:CDS | 45.0% | |
| ACATACCTCTACCCCACAAA+GGG | - | chr3_4:50916410-50916429 | None:intergenic | 45.0% | |
| ACCATGGTCAAGCAGAAGTT+TGG | + | chr3_4:50916449-50916468 | Msa0505440:CDS | 45.0% | |
| CTCCATTTACAACCTGCTCA+TGG | - | chr3_4:50916783-50916802 | None:intergenic | 45.0% | |
| GGAGCTGAAGCTATAAAGGA+TGG | + | chr3_4:50916799-50916818 | Msa0505440:CDS | 45.0% | |
| AGGAGATACACGGGATAACA+TGG | + | chr3_4:50916867-50916886 | Msa0505440:CDS | 45.0% | |
| TACACGGGATAACATGGATG+AGG | + | chr3_4:50916873-50916892 | Msa0505440:CDS | 45.0% | |
| GAGTGATGAGCAACTACCTA+TGG | + | chr3_4:50916942-50916961 | Msa0505440:CDS | 45.0% | |
| GTAATGACAGTGACCGCTAT+AGG | - | chr3_4:50916025-50916044 | None:intergenic | 45.0% | |
| GCGGTCACTGTCATTACTAA+TGG | + | chr3_4:50916028-50916047 | Msa0505440:intron | 45.0% | |
| TGAATTGAGCACCCTTTGTG+GGG | + | chr3_4:50916396-50916415 | Msa0505440:CDS | 45.0% | |
| ACATACCTCTACCCCACAAA+GGG | - | chr3_4:50916410-50916429 | None:intergenic | 45.0% | |
| ACCATGGTCAAGCAGAAGTT+TGG | + | chr3_4:50916449-50916468 | Msa0505440:CDS | 45.0% | |
| CTCCATTTACAACCTGCTCA+TGG | - | chr3_4:50916783-50916802 | None:intergenic | 45.0% | |
| GGAGCTGAAGCTATAAAGGA+TGG | + | chr3_4:50916799-50916818 | Msa0505440:CDS | 45.0% | |
| AGGAGATACACGGGATAACA+TGG | + | chr3_4:50916867-50916886 | Msa0505440:CDS | 45.0% | |
| TACACGGGATAACATGGATG+AGG | + | chr3_4:50916873-50916892 | Msa0505440:CDS | 45.0% | |
| GAGTGATGAGCAACTACCTA+TGG | + | chr3_4:50916942-50916961 | Msa0505440:CDS | 45.0% | |
| !!! | TAAAATTTTTTATTTGATTT+GGG | - | chr3_4:50915612-50915631 | None:intergenic | 5.0% |
| !!! | TTAAAATTTTTTATTTGATT+TGG | - | chr3_4:50915613-50915632 | None:intergenic | 5.0% |
| !!! | TCAAATAAAAAATTTTAAAT+TGG | + | chr3_4:50915615-50915634 | Msa0505440:intron | 5.0% |
| !!! | TAAAATTTTTTATTTGATTT+GGG | - | chr3_4:50915612-50915631 | None:intergenic | 5.0% |
| !!! | TTAAAATTTTTTATTTGATT+TGG | - | chr3_4:50915613-50915632 | None:intergenic | 5.0% |
| !!! | TCAAATAAAAAATTTTAAAT+TGG | + | chr3_4:50915615-50915634 | Msa0505440:intron | 5.0% |
| ! | GTTTTACAGTGGGGCCTCAA+GGG | - | chr3_4:50915213-50915232 | None:intergenic | 50.0% |
| ! | AGTTTTACAGTGGGGCCTCA+AGG | - | chr3_4:50915214-50915233 | None:intergenic | 50.0% |
| TCAAAAACGGGCAAAGTCGG+TGG | + | chr3_4:50915570-50915589 | Msa0505440:intron | 50.0% | |
| CACATACCTCTACCCCACAA+AGG | - | chr3_4:50916411-50916430 | None:intergenic | 50.0% | |
| GCCAAACTTCTGCTTGACCA+TGG | - | chr3_4:50916453-50916472 | None:intergenic | 50.0% | |
| CACACGTTCTAGTCCTATCG+CGG | - | chr3_4:50916479-50916498 | None:intergenic | 50.0% | |
| TACAACCTGCTCATGGGCTT+GGG | - | chr3_4:50916776-50916795 | None:intergenic | 50.0% | |
| TTACAACCTGCTCATGGGCT+TGG | - | chr3_4:50916777-50916796 | None:intergenic | 50.0% | |
| GCCCATGAGCAGGTTGTAAA+TGG | + | chr3_4:50916778-50916797 | Msa0505440:CDS | 50.0% | |
| GATGAGGTTGCTGATACCCA+TGG | + | chr3_4:50916889-50916908 | Msa0505440:CDS | 50.0% | |
| ! | GTTTTACAGTGGGGCCTCAA+GGG | - | chr3_4:50915213-50915232 | None:intergenic | 50.0% |
| ! | AGTTTTACAGTGGGGCCTCA+AGG | - | chr3_4:50915214-50915233 | None:intergenic | 50.0% |
| TCAAAAACGGGCAAAGTCGG+TGG | + | chr3_4:50915570-50915589 | Msa0505440:intron | 50.0% | |
| CACATACCTCTACCCCACAA+AGG | - | chr3_4:50916411-50916430 | None:intergenic | 50.0% | |
| GCCAAACTTCTGCTTGACCA+TGG | - | chr3_4:50916453-50916472 | None:intergenic | 50.0% | |
| CACACGTTCTAGTCCTATCG+CGG | - | chr3_4:50916479-50916498 | None:intergenic | 50.0% | |
| TACAACCTGCTCATGGGCTT+GGG | - | chr3_4:50916776-50916795 | None:intergenic | 50.0% | |
| TTACAACCTGCTCATGGGCT+TGG | - | chr3_4:50916777-50916796 | None:intergenic | 50.0% | |
| GCCCATGAGCAGGTTGTAAA+TGG | + | chr3_4:50916778-50916797 | Msa0505440:CDS | 50.0% | |
| GATGAGGTTGCTGATACCCA+TGG | + | chr3_4:50916889-50916908 | Msa0505440:CDS | 50.0% | |
| ! | GATCTTCGGTGTGTGTCCCA+AGG | + | chr3_4:50915170-50915189 | Msa0505440:intron | 55.0% |
| GAAGTTTGGCCATCCGCGAT+AGG | + | chr3_4:50916463-50916482 | Msa0505440:CDS | 55.0% | |
| CGTTCTAGTCCTATCGCGGA+TGG | - | chr3_4:50916475-50916494 | None:intergenic | 55.0% | |
| ! | ATTGCTCAAGTGCCGCTGAG+TGG | + | chr3_4:50916844-50916863 | Msa0505440:CDS | 55.0% |
| CGTGTATCTCCTCCACTCAG+CGG | - | chr3_4:50916859-50916878 | None:intergenic | 55.0% | |
| CGCTGAGTGGAGGAGATACA+CGG | + | chr3_4:50916857-50916876 | Msa0505440:CDS | 55.0% | |
| GCTGAGTGGAGGAGATACAC+GGG | + | chr3_4:50916858-50916877 | Msa0505440:CDS | 55.0% | |
| ! | GATCTTCGGTGTGTGTCCCA+AGG | + | chr3_4:50915170-50915189 | Msa0505440:intron | 55.0% |
| GAAGTTTGGCCATCCGCGAT+AGG | + | chr3_4:50916463-50916482 | Msa0505440:CDS | 55.0% | |
| CGTTCTAGTCCTATCGCGGA+TGG | - | chr3_4:50916475-50916494 | None:intergenic | 55.0% | |
| ! | ATTGCTCAAGTGCCGCTGAG+TGG | + | chr3_4:50916844-50916863 | Msa0505440:CDS | 55.0% |
| CGTGTATCTCCTCCACTCAG+CGG | - | chr3_4:50916859-50916878 | None:intergenic | 55.0% | |
| CGCTGAGTGGAGGAGATACA+CGG | + | chr3_4:50916857-50916876 | Msa0505440:CDS | 55.0% | |
| GCTGAGTGGAGGAGATACAC+GGG | + | chr3_4:50916858-50916877 | Msa0505440:CDS | 55.0% | |
| GAGCACCCTTTGTGGGGTAG+AGG | + | chr3_4:50916402-50916421 | Msa0505440:CDS | 60.0% | |
| GGTAACCCAAGCCCATGAGC+AGG | + | chr3_4:50916768-50916787 | Msa0505440:CDS | 60.0% | |
| GGTGGCATGAGGAAGCCCAT+AGG | - | chr3_4:50916961-50916980 | None:intergenic | 60.0% | |
| GAGCACCCTTTGTGGGGTAG+AGG | + | chr3_4:50916402-50916421 | Msa0505440:CDS | 60.0% | |
| GGTAACCCAAGCCCATGAGC+AGG | + | chr3_4:50916768-50916787 | Msa0505440:CDS | 60.0% | |
| GGTGGCATGAGGAAGCCCAT+AGG | - | chr3_4:50916961-50916980 | None:intergenic | 60.0% | |
| ! | GCTCAAGTGCCGCTGAGTGG+AGG | + | chr3_4:50916847-50916866 | Msa0505440:CDS | 65.0% |
| ! | GCTCAAGTGCCGCTGAGTGG+AGG | + | chr3_4:50916847-50916866 | Msa0505440:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 50914985 | 50917038 | 50914985 | ID=Msa0505440;Name=Msa0505440 |
| chr3_4 | mRNA | 50914985 | 50917038 | 50914985 | ID=Msa0505440-mRNA-1;Parent=Msa0505440;Name=Msa0505440-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|0|0|2|0|246 |
| chr3_4 | exon | 50914985 | 50915063 | 50914985 | ID=Msa0505440-mRNA-1:exon:11090;Parent=Msa0505440-mRNA-1 |
| chr3_4 | exon | 50916377 | 50917038 | 50916377 | ID=Msa0505440-mRNA-1:exon:11091;Parent=Msa0505440-mRNA-1 |
| chr3_4 | CDS | 50914985 | 50915063 | 50914985 | ID=Msa0505440-mRNA-1:cds;Parent=Msa0505440-mRNA-1 |
| chr3_4 | CDS | 50916377 | 50917038 | 50916377 | ID=Msa0505440-mRNA-1:cds;Parent=Msa0505440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
