AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0506960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506960 MtrunA17_Chr3g0110351 94.357 319 9 4 1 318 1 311 0.0 602
Msa0506960 MtrunA17_Chr5g0434571 63.295 346 73 11 1 318 37 356 2.23e-125 362
Msa0506960 MtrunA17_Chr4g0057031 62.326 215 69 3 1 212 1 206 4.83e-84 254
Msa0506960 MtrunA17_Chr7g0228891 58.937 207 65 4 1 202 1 192 4.72e-76 234
Msa0506960 MtrunA17_Chr6g0453471 67.123 146 43 1 1 141 1 146 1.98e-66 212
Msa0506960 MtrunA17_Chr4g0039971 72.441 127 35 0 1 127 2 128 3.84e-66 211
Msa0506960 MtrunA17_Chr7g0217741 71.654 127 36 0 1 127 1 127 4.18e-65 207
Msa0506960 MtrunA17_Chr4g0042671 53.333 195 68 2 1 175 1 192 4.96e-65 210
Msa0506960 MtrunA17_Chr3g0115821 70.079 127 38 0 1 127 1 127 1.50e-64 207
Msa0506960 MtrunA17_Chr8g0349261 70.896 134 37 2 1 132 1 134 2.60e-64 205
Msa0506960 MtrunA17_Chr5g0410961 69.291 127 39 0 1 127 1 127 6.93e-63 202
Msa0506960 MtrunA17_Chr4g0037141 57.792 154 65 0 1 154 1 154 1.07e-62 200
Msa0506960 MtrunA17_Chr2g0281071 70.866 127 36 1 1 126 1 127 6.75e-62 200
Msa0506960 MtrunA17_Chr2g0323411 71.429 126 36 0 1 126 1 126 1.30e-61 199
Msa0506960 MtrunA17_Chr3g0131121 63.504 137 50 0 1 137 1 137 1.75e-61 197
Msa0506960 MtrunA17_Chr4g0048511 70.079 127 37 1 1 126 1 127 2.60e-61 199
Msa0506960 MtrunA17_Chr1g0193371 66.923 130 43 0 1 130 1 130 1.91e-60 197
Msa0506960 MtrunA17_Chr7g0270891 49.261 203 88 3 1 200 1 191 7.38e-60 195
Msa0506960 MtrunA17_Chr5g0395281 66.142 127 43 0 1 127 1 127 1.81e-59 192
Msa0506960 MtrunA17_Chr4g0058631 43.825 251 122 4 1 244 1 239 6.72e-59 193
Msa0506960 MtrunA17_Chr3g0117091 60.690 145 56 1 1 145 1 144 1.41e-58 191
Msa0506960 MtrunA17_Chr5g0435101 63.492 126 46 0 3 128 2 127 1.72e-58 187
Msa0506960 MtrunA17_Chr8g0385321 64.341 129 46 0 1 129 1 129 1.93e-58 190
Msa0506960 MtrunA17_Chr1g0193801 65.385 130 45 0 1 130 1 130 2.77e-58 192
Msa0506960 MtrunA17_Chr1g0211161 65.891 129 44 0 3 131 4 132 1.26e-57 185
Msa0506960 MtrunA17_Chr1g0187761 39.661 295 134 7 1 293 1 253 1.59e-57 186
Msa0506960 MtrunA17_Chr3g0103281 61.871 139 53 0 1 139 1 139 1.97e-57 188
Msa0506960 MtrunA17_Chr7g0261281 69.828 116 35 0 1 116 1 116 1.72e-56 184
Msa0506960 MtrunA17_Chr2g0309911 62.879 132 48 1 1 132 1 131 1.54e-55 182
Msa0506960 MtrunA17_Chr7g0271241 67.692 130 42 0 1 130 1 130 2.08e-55 184
Msa0506960 MtrunA17_Chr3g0121241 64.800 125 44 0 5 129 35 159 2.37e-55 182
Msa0506960 MtrunA17_Chr6g0452271 61.538 130 50 0 1 130 1 130 8.78e-55 181
Msa0506960 MtrunA17_Chr4g0068061 66.379 116 39 0 1 116 1 116 2.43e-54 180
Msa0506960 MtrunA17_Chr7g0274581 63.559 118 43 0 1 118 1 118 3.72e-54 176
Msa0506960 MtrunA17_Chr1g0194951 68.103 116 37 0 1 116 1 116 9.30e-54 180
Msa0506960 MtrunA17_Chr1g0203411 49.383 162 81 1 1 162 1 161 1.28e-53 177
Msa0506960 MtrunA17_Chr2g0330041 51.829 164 78 1 1 163 1 164 1.31e-53 180
Msa0506960 MtrunA17_Chr4g0060721 50.909 165 73 2 1 157 2 166 2.15e-53 177
Msa0506960 MtrunA17_Chr7g0275911 64.103 117 42 0 1 117 1 117 2.36e-53 175
Msa0506960 MtrunA17_Chr1g0167691 40.138 289 130 8 1 289 1 246 3.57e-53 175
Msa0506960 MtrunA17_Chr3g0092401 63.866 119 43 0 1 119 2 120 5.17e-53 176
Msa0506960 MtrunA17_Chr7g0217221 67.797 118 38 0 1 118 1 118 6.01e-53 174
Msa0506960 MtrunA17_Chr4g0044421 63.780 127 45 1 3 128 2 128 6.49e-53 172
Msa0506960 MtrunA17_Chr8g0346561 62.712 118 44 0 1 118 1 118 1.23e-52 175
Msa0506960 MtrunA17_Chr8g0342521 62.602 123 46 0 1 123 1 123 2.03e-52 176
Msa0506960 MtrunA17_Chr1g0167661 66.379 116 39 0 1 116 1 116 2.91e-52 172
Msa0506960 MtrunA17_Chr8g0342541 61.789 123 47 0 1 123 1 123 2.43e-51 173
Msa0506960 MtrunA17_Chr7g0254411 62.400 125 45 1 1 123 1 125 5.72e-51 171
Msa0506960 MtrunA17_Chr4g0070611 57.971 138 58 0 1 138 1 138 6.63e-51 171
Msa0506960 MtrunA17_Chr8g0387421 61.864 118 45 0 1 118 1 118 7.37e-51 171
Msa0506960 MtrunA17_Chr8g0342481 64.103 117 41 1 1 116 1 117 1.79e-50 172
Msa0506960 MtrunA17_Chr7g0269831 68.103 116 37 0 1 116 1 116 1.84e-50 171
Msa0506960 MtrunA17_Chr4g0070641 57.971 138 58 0 1 138 1 138 3.27e-50 164
Msa0506960 MtrunA17_Chr2g0323351 64.407 118 42 0 1 118 1 118 2.22e-49 165
Msa0506960 MtrunA17_Chr2g0311221 67.273 110 36 0 2 111 4 113 3.55e-49 167
Msa0506960 MtrunA17_Chr4g0022911 52.817 142 65 2 1 140 1 142 6.86e-49 165
Msa0506960 MtrunA17_Chr4g0022901 61.207 116 44 1 1 115 1 116 8.21e-49 164
Msa0506960 MtrunA17_Chr4g0022931 52.381 147 59 3 1 146 1 137 1.02e-48 164
Msa0506960 MtrunA17_Chr5g0417821 54.795 146 66 0 10 155 5 150 2.08e-48 163
Msa0506960 MtrunA17_Chr4g0032401 64.865 111 39 0 12 122 17 127 4.87e-48 164
Msa0506960 MtrunA17_Chr5g0397231 61.818 110 42 0 1 110 1 110 1.29e-47 163
Msa0506960 MtrunA17_Chr1g0151941 41.063 207 112 4 1 206 1 198 1.45e-47 160
Msa0506960 MtrunA17_Chr6g0453211 63.964 111 40 0 1 111 1 111 1.50e-47 162
Msa0506960 MtrunA17_Chr2g0328771 53.333 150 55 2 12 156 20 159 2.03e-47 162
Msa0506960 MtrunA17_Chr4g0022891 45.455 187 85 2 1 185 1 172 1.20e-45 155
Msa0506960 MtrunA17_Chr5g0400821 59.829 117 46 1 1 116 1 117 2.63e-45 156
Msa0506960 MtrunA17_Chr4g0028311 53.906 128 58 1 1 127 1 128 5.63e-45 155
Msa0506960 MtrunA17_Chr1g0152011 59.829 117 46 1 1 116 1 117 6.34e-45 156
Msa0506960 MtrunA17_Chr3g0088461 61.818 110 42 0 8 117 18 127 9.42e-45 155
Msa0506960 MtrunA17_Chr7g0264641 57.500 120 50 1 1 119 1 120 1.79e-44 153
Msa0506960 MtrunA17_Chr4g0022881 57.895 114 48 0 1 114 1 114 2.40e-44 151
Msa0506960 MtrunA17_Chr7g0247131 56.061 132 52 2 43 168 9 140 4.42e-44 152
Msa0506960 MtrunA17_Chr1g0203441 54.887 133 58 2 1 132 1 132 8.40e-44 151
Msa0506960 MtrunA17_Chr3g0135311 51.020 147 67 2 1 142 1 147 1.17e-43 152
Msa0506960 MtrunA17_Chr6g0470971 58.120 117 47 1 1 115 1 117 1.31e-43 151
Msa0506960 MtrunA17_Chr8g0354661 60.185 108 43 0 10 117 35 142 1.87e-43 156
Msa0506960 MtrunA17_Chr7g0228231 60.748 107 42 0 12 118 14 120 2.07e-43 148
Msa0506960 MtrunA17_Chr1g0168661 62.857 105 39 0 13 117 22 126 2.13e-43 149
Msa0506960 MtrunA17_Chr1g0186061 62.857 105 39 0 13 117 21 125 2.97e-43 149
Msa0506960 MtrunA17_Chr6g0450101 55.372 121 52 1 1 119 1 121 7.87e-43 146
Msa0506960 MtrunA17_Chr1g0209661 52.542 118 56 0 12 129 27 144 1.03e-42 149
Msa0506960 MtrunA17_Chr2g0327351 58.559 111 45 1 1 110 1 111 1.47e-42 149
Msa0506960 MtrunA17_Chr1g0194291 54.783 115 52 0 8 122 17 131 9.13e-42 145
Msa0506960 MtrunA17_Chr4g0072751 58.559 111 45 1 1 110 1 111 1.35e-41 147
Msa0506960 MtrunA17_Chr4g0054391 59.091 110 44 1 1 109 1 110 1.76e-41 145
Msa0506960 MtrunA17_Chr3g0099131 58.879 107 44 0 12 118 41 147 2.17e-41 150
Msa0506960 MtrunA17_Chr2g0327821 44.218 147 79 1 12 155 6 152 2.07e-40 141
Msa0506960 MtrunA17_Chr1g0194301 52.174 115 55 0 8 122 29 143 2.09e-40 142
Msa0506960 MtrunA17_Chr3g0080861 55.556 108 48 0 10 117 35 142 3.40e-40 147
Msa0506960 MtrunA17_Chr6g0487491 52.419 124 50 2 1 115 1 124 2.09e-39 139
Msa0506960 MtrunA17_Chr1g0180391 52.632 114 54 0 4 117 11 124 1.19e-38 136
Msa0506960 MtrunA17_Chr4g0055981 56.140 114 50 0 12 125 55 168 1.85e-38 136
Msa0506960 MtrunA17_Chr4g0042611 67.045 88 29 0 1 88 1 88 2.00e-38 131
Msa0506960 MtrunA17_Chr2g0294811 68.182 88 28 0 1 88 1 88 2.48e-38 132
Msa0506960 MtrunA17_Chr1g0154031 56.731 104 45 0 12 115 76 179 4.71e-38 139
Msa0506960 MtrunA17_Chr2g0293911 53.043 115 54 0 8 122 20 134 1.15e-37 136
Msa0506960 MtrunA17_Chr4g0030881 55.455 110 42 1 13 115 8 117 1.18e-37 134
Msa0506960 MtrunA17_Chr8g0343831 59.048 105 43 0 14 118 10 114 1.37e-37 134
Msa0506960 MtrunA17_Chr4g0068921 53.043 115 54 0 8 122 20 134 3.00e-37 131
Msa0506960 MtrunA17_Chr2g0322521 57.798 109 46 0 9 117 26 134 5.68e-37 136
Msa0506960 MtrunA17_Chr7g0240821 56.075 107 47 0 16 122 5 111 2.30e-35 127
Msa0506960 MtrunA17_Chr5g0440781 46.099 141 68 3 13 146 13 152 2.92e-35 126
Msa0506960 MtrunA17_Chr5g0440761 46.099 141 68 3 13 146 13 152 8.36e-35 127
Msa0506960 MtrunA17_Chr5g0441141 46.099 141 68 3 13 146 13 152 9.11e-35 127
Msa0506960 MtrunA17_Chr5g0434931 55.660 106 47 0 11 116 34 139 1.29e-34 127
Msa0506960 MtrunA17_Chr5g0434911 53.636 110 51 0 7 116 16 125 1.75e-34 127
Msa0506960 MtrunA17_Chr8g0342461 61.111 90 34 1 1 89 1 90 3.14e-34 122
Msa0506960 MtrunA17_Chr8g0342511 60.920 87 34 0 1 87 1 87 3.58e-34 120
Msa0506960 MtrunA17_Chr8g0342471 61.111 90 34 1 1 89 1 90 7.58e-34 121
Msa0506960 MtrunA17_Chr8g0342531 59.551 89 36 0 1 89 1 89 1.37e-33 121
Msa0506960 MtrunA17_Chr7g0220341 34.703 219 110 5 10 225 23 211 2.40e-33 124
Msa0506960 MtrunA17_Chr5g0434831 54.717 106 48 0 11 116 6 111 1.41e-32 119
Msa0506960 MtrunA17_Chr1g0192411 41.975 162 77 4 8 162 8 159 1.44e-32 124
Msa0506960 MtrunA17_Chr7g0228991 54.717 106 48 0 11 116 28 133 2.86e-32 121
Msa0506960 MtrunA17_Chr8g0360111 53.922 102 47 0 11 112 24 125 2.67e-31 118
Msa0506960 MtrunA17_Chr5g0395221 60.714 84 33 0 5 88 5 88 4.65e-31 112
Msa0506960 MtrunA17_Chr2g0323321 58.696 92 37 1 1 92 1 91 4.74e-31 113
Msa0506960 MtrunA17_Chr5g0434841 52.830 106 50 0 11 116 19 124 5.19e-31 119
Msa0506960 MtrunA17_Chr3g0099141 55.172 87 39 0 8 94 36 122 1.22e-30 112
Msa0506960 MtrunA17_Chr3g0093811 52.688 93 44 0 43 135 13 105 1.24e-28 111
Msa0506960 MtrunA17_Chr5g0441131 48.276 116 58 2 10 124 7 121 1.31e-28 108
Msa0506960 MtrunA17_Chr5g0429661 53.000 100 44 2 12 110 120 217 1.74e-28 112
Msa0506960 MtrunA17_Chr8g0334881 46.903 113 58 2 8 119 6 117 1.91e-28 112
Msa0506960 MtrunA17_Chr4g0013361 49.038 104 52 1 12 114 10 113 3.08e-28 110
Msa0506960 MtrunA17_Chr3g0133601 47.573 103 51 2 14 115 37 137 5.65e-26 103
Msa0506960 MtrunA17_Chr4g0008551 39.568 139 69 4 14 143 38 170 7.87e-26 105
Msa0506960 MtrunA17_Chr3g0117511 43.243 111 60 2 9 118 178 286 1.85e-25 105
Msa0506960 MtrunA17_Chr4g0053431 47.170 106 47 2 14 115 5 105 3.45e-25 102
Msa0506960 MtrunA17_Chr7g0238631 49.057 106 51 2 12 116 111 214 5.30e-25 105
Msa0506960 MtrunA17_Chr7g0238631 33.019 106 69 2 14 118 61 165 2.57e-11 64.3
Msa0506960 MtrunA17_Chr4g0058991 44.144 111 59 2 9 118 204 312 7.42e-25 103
Msa0506960 MtrunA17_Chr6g0454921 43.750 112 60 2 14 124 15 124 9.37e-25 99.4
Msa0506960 MtrunA17_Chr5g0401731 40.945 127 67 3 14 134 15 139 1.03e-24 102
Msa0506960 MtrunA17_Chr3g0139671 44.340 106 56 2 12 116 83 186 4.51e-23 99.8
Msa0506960 MtrunA17_Chr6g0480581 34.146 164 99 3 14 176 4 159 5.24e-23 95.5
Msa0506960 MtrunA17_Chr6g0453751 50.000 92 37 2 11 93 19 110 8.37e-23 92.0
Msa0506960 MtrunA17_Chr7g0229101 57.746 71 30 0 43 113 3 73 2.64e-22 92.8
Msa0506960 MtrunA17_Chr1g0157731 44.340 106 56 2 12 116 89 192 9.36e-22 95.9
Msa0506960 MtrunA17_Chr7g0229131 42.105 114 63 2 43 156 3 113 1.09e-21 90.1
Msa0506960 MtrunA17_Chr6g0460661 40.870 115 64 3 14 127 16 127 2.33e-21 89.0
Msa0506960 MtrunA17_Chr7g0228531 38.462 143 84 3 14 154 220 360 3.89e-21 93.2
Msa0506960 MtrunA17_Chr5g0425591 49.412 85 42 1 10 93 7 91 4.24e-21 86.3
Msa0506960 MtrunA17_Chr5g0437321 43.396 106 54 3 8 112 16 116 4.49e-21 91.3
Msa0506960 MtrunA17_Chr5g0434901 56.061 66 29 0 48 113 9 74 2.04e-20 85.1
Msa0506960 MtrunA17_Chr7g0233061 39.552 134 68 5 14 140 180 307 4.39e-20 89.4
Msa0506960 MtrunA17_Chr5g0417621 41.509 106 59 2 14 118 134 237 4.48e-20 90.1
Msa0506960 MtrunA17_Chr4g0042501 41.509 106 59 2 14 118 105 208 4.91e-20 90.1
Msa0506960 MtrunA17_Chr1g0177901 35.664 143 85 4 25 162 5 145 3.19e-19 84.3
Msa0506960 MtrunA17_Chr5g0397841 45.455 99 51 2 12 109 108 204 1.51e-18 85.9
Msa0506960 MtrunA17_Chr6g0460671 39.252 107 62 2 14 119 99 203 1.23e-17 82.4
Msa0506960 MtrunA17_Chr3g0125801 38.400 125 71 3 14 134 16 138 2.17e-17 80.9
Msa0506960 MtrunA17_Chr7g0228401 34.375 160 95 6 25 178 290 445 2.54e-17 82.4
Msa0506960 MtrunA17_Chr5g0395231 66.000 50 17 0 78 127 5 54 3.59e-17 79.7
Msa0506960 MtrunA17_Chr7g0228481 40.000 110 61 3 14 120 220 327 4.64e-17 81.3
Msa0506960 MtrunA17_Chr7g0238651 37.069 116 65 2 17 124 10 125 1.50e-16 79.3
Msa0506960 MtrunA17_Chr7g0254261 41.071 112 59 3 9 115 80 189 2.35e-16 79.0
Msa0506960 MtrunA17_Chr7g0247141 62.500 48 17 1 1 47 1 48 3.61e-16 72.0
Msa0506960 MtrunA17_Chr4g0042621 38.318 107 43 2 89 175 15 118 4.44e-14 72.0
Msa0506960 MtrunA17_Chr5g0416341 37.624 101 62 1 17 117 29 128 1.23e-12 68.2
Msa0506960 MtrunA17_Chr3g0145551 55.357 56 23 1 92 145 2 57 1.92e-12 62.4
Msa0506960 MtrunA17_Chr5g0434871 58.140 43 18 0 74 116 2 44 4.27e-12 60.8
Msa0506960 MtrunA17_Chr1g0193901 45.238 84 44 2 12 93 11 94 5.26e-12 62.0
Msa0506960 MtrunA17_Chr1g0193891 45.238 84 44 2 12 93 11 94 5.26e-12 62.0
Msa0506960 MtrunA17_Chr1g0193871 45.238 84 44 2 12 93 11 94 5.26e-12 62.0
Msa0506960 MtrunA17_Chr1g0193881 45.238 84 44 2 12 93 11 94 5.26e-12 62.0
Msa0506960 MtrunA17_Chr3g0104491 41.791 67 35 1 53 115 1 67 2.23e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506960 AT5G16600.1 47.414 348 132 8 1 318 1 327 3.48e-98 293
Msa0506960 AT1G66230.1 57.860 299 99 6 1 297 1 274 1.85e-97 289
Msa0506960 AT4G22680.1 86.154 130 18 0 1 130 1 130 3.24e-81 247
Msa0506960 AT4G12350.1 71.250 160 41 1 1 155 1 160 3.45e-80 245
Msa0506960 AT5G14340.1 66.452 155 51 1 1 155 13 166 4.92e-72 224
Msa0506960 AT5G62320.1 61.310 168 55 2 2 162 3 167 1.67e-69 217
Msa0506960 AT3G61250.1 46.964 247 109 4 1 247 1 225 2.72e-66 210
Msa0506960 AT3G02940.2 72.441 127 35 0 1 127 1 127 3.68e-66 210
Msa0506960 AT3G02940.1 72.441 127 35 0 1 127 1 127 8.77e-66 209
Msa0506960 AT3G02940.3 72.441 127 35 0 1 127 1 127 8.77e-66 209
Msa0506960 AT3G01140.2 66.901 142 46 1 1 142 1 141 3.53e-65 209
Msa0506960 AT5G15310.1 71.654 127 36 0 1 127 1 127 4.15e-65 208
Msa0506960 AT5G15310.2 71.654 127 36 0 1 127 1 127 6.23e-65 207
Msa0506960 AT5G15310.4 71.654 127 36 0 1 127 1 127 8.49e-65 204
Msa0506960 AT4G28110.1 70.635 126 37 0 1 126 1 126 1.74e-64 205
Msa0506960 AT5G16770.4 70.866 127 37 0 1 127 1 127 2.66e-64 206
Msa0506960 AT5G16770.3 70.866 127 37 0 1 127 1 127 2.66e-64 206
Msa0506960 AT5G16770.1 70.866 127 37 0 1 127 1 127 6.15e-64 205
Msa0506960 AT5G16770.2 70.866 127 37 0 1 127 1 127 6.15e-64 205
Msa0506960 AT1G34670.1 70.866 127 37 0 1 127 1 127 3.19e-63 204
Msa0506960 AT4G21440.1 69.841 126 38 0 1 126 1 126 1.02e-62 202
Msa0506960 AT5G65230.1 70.079 127 38 0 1 127 1 127 1.88e-62 201
Msa0506960 AT3G01140.1 66.667 138 45 1 5 142 48 184 6.73e-62 202
Msa0506960 AT5G10280.1 56.098 164 66 1 1 158 1 164 8.00e-62 200
Msa0506960 AT4G05100.1 70.079 127 37 1 1 126 1 127 1.93e-61 199
Msa0506960 AT5G26660.1 62.838 148 49 2 1 142 1 148 5.52e-61 198
Msa0506960 AT4G17785.2 67.424 132 42 1 1 131 1 132 7.17e-61 198
Msa0506960 AT4G17785.1 67.424 132 42 1 1 131 1 132 9.23e-61 198
Msa0506960 AT4G38620.1 56.667 150 65 0 1 150 1 150 1.09e-60 195
Msa0506960 AT2G16720.1 58.741 143 59 0 1 143 1 143 1.51e-60 194
Msa0506960 AT1G57560.1 63.309 139 51 0 1 139 1 139 4.56e-60 195
Msa0506960 AT5G61420.2 63.309 139 48 1 1 136 1 139 7.85e-60 196
Msa0506960 AT1G22640.1 49.206 189 83 3 1 185 1 180 9.41e-60 192
Msa0506960 AT4G09460.1 59.712 139 56 0 1 139 1 139 1.04e-59 191
Msa0506960 AT1G57560.2 66.923 130 43 0 1 130 1 130 1.07e-59 192
Msa0506960 AT4G01680.3 61.074 149 55 1 1 149 1 146 1.64e-59 191
Msa0506960 AT5G07690.1 63.121 141 52 0 1 141 1 141 1.67e-59 194
Msa0506960 AT4G01680.1 66.923 130 43 0 1 130 1 130 3.89e-59 193
Msa0506960 AT1G09540.1 67.692 130 42 0 1 130 1 130 5.56e-59 193
Msa0506960 AT5G07700.1 40.514 311 143 8 1 299 1 281 1.67e-58 191
Msa0506960 AT5G07700.2 40.514 311 143 8 1 299 1 281 1.67e-58 191
Msa0506960 AT3G23250.1 55.215 163 57 2 1 151 1 159 3.31e-58 189
Msa0506960 AT1G06180.1 70.690 116 34 0 1 116 1 116 4.17e-58 187
Msa0506960 AT3G13540.1 55.263 152 68 0 5 156 16 167 8.25e-58 187
Msa0506960 AT5G56110.1 62.590 139 52 0 1 139 1 139 2.65e-57 188
Msa0506960 AT4G34990.1 58.042 143 60 0 1 143 1 143 4.50e-57 186
Msa0506960 AT1G35515.1 63.492 126 46 0 1 126 1 126 5.56e-57 183
Msa0506960 AT5G54230.1 67.460 126 41 0 1 126 1 126 1.04e-56 186
Msa0506960 AT1G18570.1 63.433 134 48 1 1 133 1 134 1.87e-56 186
Msa0506960 AT2G31180.1 67.797 118 38 0 1 118 1 118 2.38e-56 183
Msa0506960 AT4G01680.2 61.268 142 43 1 1 130 1 142 1.19e-55 184
Msa0506960 AT1G74080.1 58.389 149 60 1 1 149 1 147 1.72e-55 183
Msa0506960 AT5G49330.1 60.000 135 53 1 1 134 1 135 2.23e-55 183
Msa0506960 AT3G47600.1 67.227 119 39 0 1 119 1 119 2.30e-55 183
Msa0506960 AT2G47460.1 54.545 154 65 1 1 149 1 154 6.23e-54 181
Msa0506960 AT3G12720.1 61.240 129 49 1 1 129 12 139 7.21e-54 179
Msa0506960 AT5G60890.1 43.192 213 114 3 1 211 1 208 8.78e-54 178
Msa0506960 AT1G16490.1 67.826 115 37 0 2 116 4 118 1.07e-53 177
Msa0506960 AT5G62470.2 64.706 119 42 0 1 119 1 119 2.56e-53 178
Msa0506960 AT3G62610.1 38.235 306 156 9 1 293 1 286 3.36e-53 178
Msa0506960 AT1G08810.1 65.254 118 41 0 1 118 1 118 3.90e-53 176
Msa0506960 AT3G28910.1 65.574 122 42 0 1 122 1 122 8.72e-53 176
Msa0506960 AT1G56160.1 67.826 115 37 0 2 116 4 118 1.70e-52 174
Msa0506960 AT1G79180.1 65.812 117 40 0 2 118 4 120 3.00e-52 174
Msa0506960 AT5G62470.1 64.706 119 41 1 1 119 1 118 6.16e-52 175
Msa0506960 AT1G63910.1 43.192 213 112 4 1 207 1 210 1.31e-51 174
Msa0506960 AT1G74650.1 64.706 119 42 0 1 119 1 119 1.40e-51 173
Msa0506960 AT3G28470.1 61.481 135 52 0 1 135 1 135 1.53e-51 173
Msa0506960 AT3G13890.2 64.655 116 41 0 1 116 1 116 4.77e-51 172
Msa0506960 AT3G12820.1 65.517 116 40 0 3 118 5 120 8.26e-51 168
Msa0506960 AT1G74430.1 59.055 127 52 0 1 127 1 127 2.83e-48 163
Msa0506960 AT1G18710.1 54.348 138 62 1 1 137 1 138 4.42e-48 162
Msa0506960 AT3G13890.1 60.000 125 41 1 1 116 1 125 6.51e-48 165
Msa0506960 AT5G12870.1 67.593 108 35 0 12 119 18 125 1.06e-47 162
Msa0506960 AT3G08500.1 64.545 110 39 0 8 117 26 135 9.43e-46 158
Msa0506960 AT5G57620.1 36.201 279 148 8 1 266 1 262 1.17e-45 158
Msa0506960 AT1G79180.2 51.333 150 40 1 2 118 4 153 2.22e-45 157
Msa0506960 AT5G23000.1 58.974 117 47 1 1 116 1 117 7.17e-45 155
Msa0506960 AT3G49690.1 59.829 117 46 1 1 116 1 117 7.91e-45 155
Msa0506960 AT3G01530.1 62.264 106 40 0 12 117 25 130 8.24e-45 152
Msa0506960 AT5G65790.1 58.974 117 47 1 1 116 1 117 1.16e-44 156
Msa0506960 AT2G36890.1 55.039 129 57 1 1 128 1 129 2.12e-44 154
Msa0506960 AT3G24310.1 63.551 107 39 0 11 117 17 123 2.86e-44 152
Msa0506960 AT2G36890.2 55.039 129 57 1 1 128 42 170 2.88e-44 154
Msa0506960 AT4G13480.1 64.762 105 37 0 13 117 7 111 3.69e-44 152
Msa0506960 AT1G68320.1 37.619 210 108 2 12 198 19 228 1.33e-43 151
Msa0506960 AT4G37780.1 56.410 117 50 1 1 116 1 117 4.76e-43 150
Msa0506960 AT2G32460.2 56.780 118 50 1 11 128 5 121 6.56e-43 154
Msa0506960 AT2G32460.1 56.780 118 50 1 11 128 17 133 7.16e-43 154
Msa0506960 AT5G40350.1 59.633 109 44 0 12 120 17 125 1.16e-42 147
Msa0506960 AT3G27810.1 59.813 107 43 0 12 118 20 126 1.63e-42 147
Msa0506960 AT5G06100.1 55.263 114 50 1 8 121 28 140 2.53e-42 152
Msa0506960 AT5G55020.1 59.633 109 44 0 10 118 24 132 8.59e-42 152
Msa0506960 AT5G06100.5 56.364 110 48 0 8 117 28 137 1.14e-41 151
Msa0506960 AT5G06100.2 56.364 110 48 0 8 117 28 137 1.14e-41 151
Msa0506960 AT5G06100.3 56.364 110 48 0 8 117 28 137 1.14e-41 151
Msa0506960 AT5G06100.4 56.364 110 48 0 8 117 28 137 1.14e-41 151
Msa0506960 AT5G52260.1 63.107 103 38 0 13 115 13 115 1.72e-41 145
Msa0506960 AT3G06490.1 57.391 115 49 0 8 122 15 129 2.01e-41 147
Msa0506960 AT1G25340.1 52.991 117 55 0 13 129 19 135 2.02e-41 145
Msa0506960 AT3G30210.1 48.408 157 72 2 11 158 26 182 4.53e-41 144
Msa0506960 AT3G11440.2 56.604 106 46 0 12 117 41 146 6.93e-41 148
Msa0506960 AT4G25560.1 60.377 106 42 0 13 118 11 116 7.59e-41 144
Msa0506960 AT1G48000.1 46.000 150 73 1 10 151 30 179 1.32e-40 142
Msa0506960 AT4G26930.1 47.552 143 68 2 10 152 17 152 1.41e-40 146
Msa0506960 AT3G11440.3 56.604 106 46 0 12 117 41 146 2.14e-40 148
Msa0506960 AT3G11440.4 56.604 106 46 0 12 117 41 146 2.14e-40 148
Msa0506960 AT3G11440.1 56.604 106 46 0 12 117 41 146 2.14e-40 148
Msa0506960 AT3G46130.1 56.897 116 48 1 11 124 8 123 3.46e-40 141
Msa0506960 AT5G14750.1 58.654 104 43 0 13 116 17 120 4.03e-40 140
Msa0506960 AT5G35550.1 60.748 107 42 0 12 118 14 120 4.70e-40 141
Msa0506960 AT5G59780.3 59.434 106 43 0 13 118 9 114 6.11e-40 140
Msa0506960 AT5G26660.2 65.385 104 30 2 45 142 14 117 6.68e-40 142
Msa0506960 AT2G47190.1 54.054 111 51 0 12 122 20 130 1.20e-39 140
Msa0506960 AT5G40330.1 58.654 104 43 0 13 116 13 116 1.33e-39 139
Msa0506960 AT2G26960.1 45.342 161 74 3 9 156 17 176 6.78e-39 142
Msa0506960 AT3G27920.1 55.769 104 46 0 13 116 15 118 8.39e-38 134
Msa0506960 AT3G53200.1 56.731 104 45 0 12 115 9 112 3.12e-37 133
Msa0506960 AT1G25340.2 50.427 117 53 1 13 129 19 130 4.28e-37 134
Msa0506960 AT3G48920.1 55.882 102 45 0 13 114 19 120 5.91e-37 133
Msa0506960 AT1G25340.3 50.427 117 53 1 13 129 19 130 8.50e-37 134
Msa0506960 AT5G49620.1 51.304 115 56 0 8 122 22 136 2.23e-36 133
Msa0506960 AT5G52600.1 43.662 142 71 1 12 144 12 153 2.90e-36 129
Msa0506960 AT3G47600.2 62.500 96 32 1 24 119 22 113 5.13e-35 130
Msa0506960 AT1G66370.1 54.783 115 48 1 1 115 1 111 2.49e-33 123
Msa0506960 AT5G49620.2 45.736 129 56 1 8 122 22 150 8.32e-33 124
Msa0506960 AT1G66380.1 58.095 105 44 0 11 115 7 111 3.59e-31 114
Msa0506960 AT1G56650.1 53.279 122 49 1 11 124 7 128 4.93e-31 117
Msa0506960 AT1G66390.1 59.048 105 43 0 11 115 7 111 6.70e-31 117
Msa0506960 AT5G35550.2 63.750 80 29 0 39 118 44 123 4.26e-30 115
Msa0506960 AT3G27810.2 64.865 74 26 0 45 118 4 77 8.66e-30 112
Msa0506960 AT3G46130.3 62.651 83 29 1 44 124 9 91 9.59e-30 113
Msa0506960 AT3G12820.2 69.444 72 22 0 47 118 1 72 1.32e-29 112
Msa0506960 AT3G60460.1 50.962 104 50 1 12 114 11 114 1.42e-29 114
Msa0506960 AT3G46130.4 63.415 82 28 1 45 124 20 101 2.05e-29 112
Msa0506960 AT5G14750.3 58.333 84 30 1 38 116 3 86 2.08e-29 110
Msa0506960 AT5G40350.2 64.474 76 27 0 45 120 5 80 2.60e-29 110
Msa0506960 AT5G59780.2 66.216 74 25 0 45 118 20 93 2.78e-29 112
Msa0506960 AT2G26950.1 46.903 113 59 1 9 121 13 124 8.11e-29 114
Msa0506960 AT1G22640.3 45.038 131 59 3 59 185 2 123 1.13e-28 109
Msa0506960 AT3G53200.2 67.606 71 23 0 45 115 9 79 2.86e-28 108
Msa0506960 AT1G18960.1 45.082 122 64 2 14 135 10 128 3.69e-28 111
Msa0506960 AT5G58850.1 46.721 122 57 3 12 132 103 217 4.82e-28 113
Msa0506960 AT5G11050.1 46.602 103 52 2 14 115 105 205 4.29e-27 110
Msa0506960 AT4G18770.1 46.847 111 56 2 9 118 212 320 1.07e-26 109
Msa0506960 AT1G71030.2 57.692 78 33 0 51 128 5 82 3.70e-26 102
Msa0506960 AT1G71030.1 57.692 78 33 0 51 128 19 96 4.55e-26 102
Msa0506960 AT3G27785.1 43.651 126 66 3 9 131 184 307 4.88e-25 104
Msa0506960 AT2G39880.1 45.600 125 56 3 14 134 50 166 9.48e-25 103
Msa0506960 AT5G02320.3 47.170 106 53 2 12 116 65 168 1.13e-24 104
Msa0506960 AT5G02320.1 47.170 106 53 2 12 116 125 228 1.16e-24 104
Msa0506960 AT5G02320.2 47.170 106 53 2 12 116 125 228 1.16e-24 104
Msa0506960 AT3G55730.1 46.364 110 50 2 14 119 56 160 3.73e-24 102
Msa0506960 AT3G09370.1 46.667 105 53 2 12 115 128 230 4.33e-24 102
Msa0506960 AT3G09370.2 46.667 105 53 2 12 115 133 235 4.57e-24 102
Msa0506960 AT3G09370.3 46.667 105 53 2 12 115 141 243 6.12e-24 102
Msa0506960 AT3G09230.1 45.794 107 49 2 14 116 55 156 1.08e-23 100
Msa0506960 AT5G67300.1 45.631 103 53 2 14 115 6 106 1.44e-23 98.6
Msa0506960 AT3G50060.1 45.631 103 53 2 14 115 6 106 2.52e-23 98.2
Msa0506960 AT5G40360.1 40.741 108 62 2 12 119 156 261 9.73e-23 97.4
Msa0506960 AT2G25230.1 41.270 126 69 3 9 131 21 144 9.82e-23 95.1
Msa0506960 AT4G37260.1 45.631 103 53 2 14 115 13 113 1.23e-22 96.7
Msa0506960 AT5G11510.3 44.340 106 56 2 12 116 79 182 1.28e-22 99.0
Msa0506960 AT5G11510.1 44.340 106 56 2 12 116 79 182 1.28e-22 99.0
Msa0506960 AT5G11510.4 44.340 106 56 2 12 116 79 182 1.28e-22 99.0
Msa0506960 AT5G11510.2 44.340 106 56 2 12 116 79 182 1.93e-22 98.2
Msa0506960 AT5G11510.5 44.340 106 56 2 12 116 79 182 2.19e-22 98.2
Msa0506960 AT3G23250.2 46.667 105 40 2 59 151 2 102 5.19e-22 92.8
Msa0506960 AT1G66380.3 60.274 73 29 0 43 115 6 78 1.15e-21 88.6
Msa0506960 AT2G23290.1 48.077 104 49 4 14 115 13 113 1.36e-21 93.6
Msa0506960 AT4G32730.1 43.396 106 57 2 12 116 85 188 1.60e-21 95.5
Msa0506960 AT4G32730.5 43.396 106 57 2 12 116 85 188 1.62e-21 95.9
Msa0506960 AT4G32730.4 43.396 106 57 2 12 116 85 188 1.62e-21 95.9
Msa0506960 AT4G32730.3 43.396 106 57 2 12 116 85 188 1.62e-21 95.9
Msa0506960 AT4G32730.2 43.396 106 57 2 12 116 85 188 1.62e-21 95.9
Msa0506960 AT1G69560.1 40.541 111 63 2 9 118 102 210 1.78e-21 93.6
Msa0506960 AT1G69560.2 40.541 111 63 2 9 118 118 226 2.56e-21 93.2
Msa0506960 AT1G26780.1 40.496 121 69 2 12 131 96 214 4.00e-21 91.7
Msa0506960 AT1G26780.2 40.496 121 69 2 12 131 96 214 4.35e-21 92.8
Msa0506960 AT1G17950.1 44.660 103 54 2 14 115 5 105 1.95e-20 89.0
Msa0506960 AT5G14750.4 62.069 58 22 0 59 116 2 59 1.17e-19 84.3
Msa0506960 AT5G14750.2 62.069 58 22 0 59 116 2 59 1.17e-19 84.3
Msa0506960 AT1G73410.1 43.396 106 57 2 14 118 6 109 6.33e-19 84.7
Msa0506960 AT5G61420.1 66.102 59 17 1 81 136 2 60 8.12e-19 85.1
Msa0506960 AT1G73410.2 43.396 106 57 2 14 118 6 109 3.38e-18 81.6
Msa0506960 AT3G29020.1 36.792 106 64 2 14 118 65 168 4.62e-18 82.0
Msa0506960 AT3G29020.2 36.792 106 64 2 14 118 67 170 5.22e-18 83.2
Msa0506960 AT4G00540.2 40.179 112 61 3 12 119 101 210 6.37e-18 84.0
Msa0506960 AT4G00540.1 40.179 112 61 3 12 119 99 208 1.02e-17 83.6
Msa0506960 AT5G40430.1 34.400 125 78 2 9 131 49 171 1.63e-17 81.3
Msa0506960 AT5G14340.2 57.353 68 28 1 88 155 10 76 1.82e-17 79.3
Msa0506960 AT1G66380.2 52.381 84 40 0 11 94 7 90 3.17e-17 76.6
Msa0506960 AT4G33450.1 35.897 117 67 3 3 118 13 122 3.61e-17 80.1
Msa0506960 AT5G17800.1 34.752 141 73 3 14 154 93 214 6.51e-17 80.5
Msa0506960 AT4G28110.2 79.487 39 8 0 88 126 4 42 1.63e-16 77.0
Msa0506960 AT5G15310.3 82.500 40 7 0 88 127 9 48 2.75e-16 77.4
Msa0506960 AT1G22640.2 41.176 102 47 3 88 185 16 108 1.93e-15 73.9
Msa0506960 AT3G46130.2 62.264 53 18 1 74 124 5 57 2.13e-15 73.9
Msa0506960 AT5G59780.1 57.895 57 22 1 70 124 1 57 2.58e-15 73.2
Msa0506960 AT2G37630.1 38.614 101 60 1 17 115 7 107 3.62e-15 75.9
Msa0506960 AT3G28910.2 65.217 46 16 0 77 122 1 46 8.70e-14 70.5
Msa0506960 AT1G74650.3 69.767 43 13 0 77 119 1 43 2.81e-13 68.9
Msa0506960 AT4G25560.2 57.447 47 20 0 69 115 1 47 3.38e-13 68.2
Msa0506960 AT5G39700.1 33.962 106 69 1 13 118 55 159 5.57e-13 67.0
Msa0506960 AT1G14350.2 37.624 101 62 1 17 117 28 127 8.73e-13 68.9
Msa0506960 AT1G14350.1 37.624 101 62 1 17 117 28 127 8.73e-13 68.9
Msa0506960 AT2G02820.1 37.624 101 62 1 17 117 33 132 1.66e-12 68.2
Msa0506960 AT2G02820.2 37.624 101 62 1 17 117 33 132 1.70e-12 68.2
Msa0506960 AT2G02820.3 37.624 101 62 1 17 117 33 132 1.93e-12 67.4
Msa0506960 AT1G74430.2 48.276 58 30 0 70 127 1 58 4.80e-12 64.7

Find 63 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTACTTGTAATGTTATTAT+AGG 0.174543 3_4:-53830141 Msa0506960:three_prime_UTR
TTCTTAACATTACCAATATT+TGG 0.187023 3_4:-53832251 Msa0506960:five_prime_UTR
GATGACTCAAATGATGTTTC+TGG 0.203229 3_4:+53830635 None:intergenic
CTGATTCACTCTTTATTCTT+TGG 0.205846 3_4:+53830113 None:intergenic
ATTTCATTTGGTATTATTAT+AGG 0.242495 3_4:+53830518 None:intergenic
ATAATATTAATATGACATTA+TGG 0.261473 3_4:-53830322 Msa0506960:CDS
ATTGAAAATAATAACTATAA+TGG 0.300375 3_4:-53830362 Msa0506960:CDS
AAGGAGAGACCTGCTAGTTT+AGG 0.302740 3_4:+53832098 None:intergenic
TCAAATTGATATTGAGATAG+AGG 0.313542 3_4:+53832314 None:intergenic
ATCAATTTCATCCTTACTAA+TGG 0.334411 3_4:-53832143 Msa0506960:CDS
ATCAGAGTATGAAGAGAAAA+TGG 0.335332 3_4:-53831652 Msa0506960:CDS
ATCTTCTTCACCTATTGAAA+TGG 0.337725 3_4:-53830705 Msa0506960:CDS
GAGAGTAACTTGTGTGTAAC+TGG 0.345365 3_4:+53830779 None:intergenic
TTACTAATGGTCAATGTTGT+TGG 0.361777 3_4:-53832130 Msa0506960:CDS
ATGATGACTTTATTAGAAGT+TGG 0.361990 3_4:-53830298 Msa0506960:CDS
ACATTGTGTTCCATTTCAAT+AGG 0.371633 3_4:+53830695 None:intergenic
TCATGTGACCAATCAAAATC+AGG 0.374886 3_4:+53830392 None:intergenic
AGGAGAGACCTGCTAGTTTA+GGG 0.379386 3_4:+53832099 None:intergenic
GAATTCATGCAGGGTTGTTA+AGG 0.393211 3_4:-53831740 Msa0506960:intron
TGATGACTTTATTAGAAGTT+GGG 0.395658 3_4:-53830297 Msa0506960:CDS
AGAGGGAGATAGAGAGAAAG+AGG 0.397375 3_4:+53832332 None:intergenic
AAAGAGTGAATCAGAATTCA+AGG 0.398275 3_4:-53830104 Msa0506960:three_prime_UTR
TAATATTAATATGACATTAT+GGG 0.400861 3_4:-53830321 Msa0506960:CDS
ATGATTCTTAATCTCATTGT+CGG 0.409072 3_4:+53830847 None:intergenic
CATGGAACTAGAATTTCATT+TGG 0.414842 3_4:+53830506 None:intergenic
CAGGGAGAAGCAAGTCTTCA+AGG 0.427410 3_4:+53830411 None:intergenic
ACAATGAGATTAAGAATCAT+TGG 0.442443 3_4:-53830844 Msa0506960:CDS
TAAAATTGCGTCTCATCTAC+CGG 0.449218 3_4:-53830876 Msa0506960:CDS
CAACCTTGTTGTGACAAAGT+TGG 0.451424 3_4:-53832209 Msa0506960:CDS
ATCTCATTGTCGGTTCGTCC+CGG 0.454632 3_4:+53830857 None:intergenic
CAAGGATTCAAGAGTGATCA+TGG 0.460334 3_4:-53830243 Msa0506960:CDS
GACAAAGTTGGATTGAAGAA+AGG 0.470330 3_4:-53832197 Msa0506960:CDS
TTATCTTCCTCAGCAGTCCA+TGG 0.477127 3_4:+53832173 None:intergenic
TGATCATGGATTCAGAATCA+TGG 0.483486 3_4:-53830229 Msa0506960:CDS
AACAACATTGACCATTAGTA+AGG 0.494366 3_4:+53832132 None:intergenic
TCCATGCTCAACTTGGCAAT+AGG 0.494591 3_4:-53831620 Msa0506960:intron
ATTGATCTCCATGCTCAACT+TGG 0.503162 3_4:-53831627 Msa0506960:CDS
TTTGTTGTTTCTCCTAGTCA+TGG 0.509215 3_4:-53829966 Msa0506960:three_prime_UTR
GAGGGAGATAGAGAGAAAGA+GGG 0.510600 3_4:+53832333 None:intergenic
TGATGTTGATGTTGATGTTG+TGG 0.515084 3_4:+53830463 None:intergenic
GATTCAGAATCATGGGCCTA+TGG 0.515199 3_4:-53830221 Msa0506960:CDS
ATACACCTAAACACAAAAGT+TGG 0.517945 3_4:+53830073 None:intergenic
TTTGGGATCATTCATTTCCA+AGG 0.536248 3_4:-53832281 Msa0506960:five_prime_UTR
CAAATTGATATTGAGATAGA+GGG 0.543854 3_4:+53832315 None:intergenic
GTGATCAATGATGATGATGA+TGG 0.544247 3_4:-53830269 Msa0506960:CDS
AAAATAAGTGTGCCATGACT+AGG 0.545596 3_4:+53829954 None:intergenic
GATCATGGATTCAGAATCAT+GGG 0.553262 3_4:-53830228 Msa0506960:CDS
ACCTATTGCCAAGTTGAGCA+TGG 0.553979 3_4:+53831619 None:intergenic
AGAGCTGTCCCTAAACTAGC+AGG 0.563146 3_4:-53832107 Msa0506960:intron
ATGTTAAGAAAGTCTACCCT+TGG 0.566121 3_4:+53832264 None:intergenic
TTGGGATCATTCATTTCCAA+GGG 0.577969 3_4:-53832280 Msa0506960:five_prime_UTR
CATGTGACCAATCAAAATCA+GGG 0.583682 3_4:+53830393 None:intergenic
CTAAAATCAAAATAATCCAT+AGG 0.591006 3_4:+53830205 None:intergenic
TGAGATGGACAAATTACCTA+AGG 0.591042 3_4:-53831698 Msa0506960:CDS
CATGCAGGGTTGTTAAGGTG+TGG 0.606205 3_4:-53831735 Msa0506960:intron
AATCCAACTTTGTCACAACA+AGG 0.606281 3_4:+53832206 None:intergenic
ATAGGTGAAGAAGATTGTTG+AGG 0.613747 3_4:+53830713 None:intergenic
AAAATTGCGTCTCATCTACC+GGG 0.622507 3_4:-53830875 Msa0506960:CDS
GATGAAGATGAAGGAACACA+TGG 0.633889 3_4:+53830488 None:intergenic
GAAAGGACCATGGACTGCTG+AGG 0.645584 3_4:-53832180 Msa0506960:CDS
TTGGATTGAAGAAAGGACCA+TGG 0.646456 3_4:-53832190 Msa0506960:CDS
TGATGATGATGATGGTGACA+AGG 0.678359 3_4:-53830261 Msa0506960:CDS
GTTGTGGTTGATGAAGATGA+AGG 0.691388 3_4:+53830479 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATAATGTTTTATTCA+AGG + chr3_4:53830815-53830834 None:intergenic 10.0%
!! TTCTAATTGTAATATATTAT+GGG + chr3_4:53831021-53831040 None:intergenic 10.0%
!! ATTGAAAATAATAACTATAA+TGG - chr3_4:53831983-53832002 Msa0506960:intron 10.0%
!! ATAATATTAATATGACATTA+TGG - chr3_4:53832023-53832042 Msa0506960:intron 10.0%
!! TAATATTAATATGACATTAT+GGG - chr3_4:53832024-53832043 Msa0506960:intron 10.0%
!! ATGTGATCAAAATATTAAAA+TGG - chr3_4:53830322-53830341 Msa0506960:CDS 15.0%
!!! TTTCTTTAACTTCATTATTT+TGG - chr3_4:53830490-53830509 Msa0506960:CDS 15.0%
!!! ATGAATTCATATCAATTTTT+AGG + chr3_4:53830593-53830612 None:intergenic 15.0%
!! TTCTATTAAGTTATTGTATT+TGG + chr3_4:53830927-53830946 None:intergenic 15.0%
!! CTTCTAATTGTAATATATTA+TGG + chr3_4:53831022-53831041 None:intergenic 15.0%
!! CATAATATATTACAATTAGA+AGG - chr3_4:53831020-53831039 Msa0506960:intron 15.0%
!!! CTTTGTATTTTTTTTATTCA+AGG - chr3_4:53831092-53831111 Msa0506960:intron 15.0%
!!! CATTTCTAAAATAAATAACT+AGG - chr3_4:53831316-53831335 Msa0506960:intron 15.0%
!! ATTTCATTTGGTATTATTAT+AGG + chr3_4:53831830-53831849 None:intergenic 15.0%
!! TTTATCATAATGTAAAAAGT+TGG + chr3_4:53832323-53832342 None:intergenic 15.0%
!! TTCTTAACATTACCAATATT+TGG - chr3_4:53830094-53830113 Msa0506960:three_prime_UTR 20.0%
!!! ATTTTTGTCTTACCAAATAT+TGG + chr3_4:53830109-53830128 None:intergenic 20.0%
!! AATATTTGGTAAGACAAAAA+TGG - chr3_4:53830108-53830127 Msa0506960:three_prime_UTR 20.0%
!! ATATTTGGTAAGACAAAAAT+GGG - chr3_4:53830109-53830128 Msa0506960:three_prime_UTR 20.0%
!!! ATTTTCTTGTCTTTGAAAAA+TGG + chr3_4:53830392-53830411 None:intergenic 20.0%
!!! GTTTTCATTTTTAATTGAAG+TGG - chr3_4:53830535-53830554 Msa0506960:CDS 20.0%
!! CTCTATTAAAATAATAGACT+AGG - chr3_4:53830863-53830882 Msa0506960:CDS 20.0%
!! AAAGAAAGAAAAAAAAGACT+TGG + chr3_4:53831063-53831082 None:intergenic 20.0%
!! TTTATTCAAGGTAAAAGAAA+AGG - chr3_4:53831104-53831123 Msa0506960:intron 20.0%
!! TTAGAAATGATTTCATCATA+AGG + chr3_4:53831305-53831324 None:intergenic 20.0%
!! AGGATTACTTTATTACTTTA+TGG - chr3_4:53831336-53831355 Msa0506960:intron 20.0%
!! ATTACTTTATTACTTTATGG+TGG - chr3_4:53831339-53831358 Msa0506960:intron 20.0%
!! CTAAAATCAAAATAATCCAT+AGG + chr3_4:53832143-53832162 None:intergenic 20.0%
!!! TTTTCTTAACATTGATCATA+TGG - chr3_4:53832181-53832200 Msa0506960:CDS 20.0%
!! CTTACTTGTAATGTTATTAT+AGG - chr3_4:53832204-53832223 Msa0506960:CDS 20.0%
! CAAATTGATATTGAGATAGA+GGG + chr3_4:53830033-53830052 None:intergenic 25.0%
! TCAAATTGATATTGAGATAG+AGG + chr3_4:53830034-53830053 None:intergenic 25.0%
! ATCAATTTCATCCTTACTAA+TGG - chr3_4:53830202-53830221 Msa0506960:exon 25.0%
!! AGTGATTTTATTGCAATGAA+AGG + chr3_4:53830269-53830288 None:intergenic 25.0%
!!! ATTTTGGTGAAATGTTAAAG+TGG - chr3_4:53830506-53830525 Msa0506960:CDS 25.0%
!!! TCATATCAATTTTTAGGCTA+TGG + chr3_4:53830587-53830606 None:intergenic 25.0%
! AAATTGATATGAATTCATGC+AGG - chr3_4:53830595-53830614 Msa0506960:CDS 25.0%
! AATTGATATGAATTCATGCA+GGG - chr3_4:53830596-53830615 Msa0506960:CDS 25.0%
! ATGATTCTTAATCTCATTGT+CGG + chr3_4:53831501-53831520 None:intergenic 25.0%
! ACAATGAGATTAAGAATCAT+TGG - chr3_4:53831501-53831520 Msa0506960:intron 25.0%
! AAAGAAAAAGCTCAAGAAAA+TGG - chr3_4:53831535-53831554 Msa0506960:intron 25.0%
! AAGAAAAAGCTCAAGAAAAT+GGG - chr3_4:53831536-53831555 Msa0506960:intron 25.0%
! ATGATGACTTTATTAGAAGT+TGG - chr3_4:53832047-53832066 Msa0506960:intron 25.0%
! TGATGACTTTATTAGAAGTT+GGG - chr3_4:53832048-53832067 Msa0506960:intron 25.0%
!! ATATACCAACTTTTGTGTTT+AGG - chr3_4:53832267-53832286 Msa0506960:five_prime_UTR 25.0%
! AAAAGTTGGAAAAAGAAAAG+TGG + chr3_4:53832309-53832328 None:intergenic 25.0%
!! AATTTGAACCCTCCATTTTT+GGG - chr3_4:53830047-53830066 Msa0506960:three_prime_UTR 30.0%
GAAATGAATGATCCCAAAAA+TGG + chr3_4:53830062-53830081 None:intergenic 30.0%
AACAACATTGACCATTAGTA+AGG + chr3_4:53830216-53830235 None:intergenic 30.0%
TTACTAATGGTCAATGTTGT+TGG - chr3_4:53830215-53830234 Msa0506960:CDS 30.0%
! CTGATAAAAGTCCTCTTTTT+AGG + chr3_4:53830678-53830697 None:intergenic 30.0%
ATCAGAGTATGAAGAGAAAA+TGG - chr3_4:53830693-53830712 Msa0506960:CDS 30.0%
TTCATCACAAAAAGAAGACA+TGG - chr3_4:53830994-53831013 Msa0506960:intron 30.0%
! TCTATAAAGTTGACTCCAAA+TGG - chr3_4:53831146-53831165 Msa0506960:intron 30.0%
! CTATAAAGTTGACTCCAAAT+GGG - chr3_4:53831147-53831166 Msa0506960:intron 30.0%
CAATATTTACGATTCCCATT+TGG + chr3_4:53831164-53831183 None:intergenic 30.0%
GAAAGACATGTTTGTCTTAT+AGG - chr3_4:53831194-53831213 Msa0506960:intron 30.0%
! GTTTAAGATATCTTCCTAAG+TGG - chr3_4:53831254-53831273 Msa0506960:intron 30.0%
CAAAAGGAATAATGACTTCA+TGG + chr3_4:53831280-53831299 None:intergenic 30.0%
! CATGAAGTCATTATTCCTTT+TGG - chr3_4:53831278-53831297 Msa0506960:intron 30.0%
ATTTCATCATAAGGTCCAAA+AGG + chr3_4:53831296-53831315 None:intergenic 30.0%
ATCTTCTTCACCTATTGAAA+TGG - chr3_4:53831640-53831659 Msa0506960:CDS 30.0%
ACATTGTGTTCCATTTCAAT+AGG + chr3_4:53831653-53831672 None:intergenic 30.0%
ATTTGAGAACCACAAAAACA+AGG - chr3_4:53831676-53831695 Msa0506960:CDS 30.0%
!!! AATGATGTTTCTGGTTTTTG+TGG + chr3_4:53831704-53831723 None:intergenic 30.0%
!! CAAAAAGTGGTGTCATAATT+TGG + chr3_4:53831763-53831782 None:intergenic 30.0%
CATGGAACTAGAATTTCATT+TGG + chr3_4:53831842-53831861 None:intergenic 30.0%
CTGATTCACTCTTTATTCTT+TGG + chr3_4:53832235-53832254 None:intergenic 30.0%
AAAGAGTGAATCAGAATTCA+AGG - chr3_4:53832241-53832260 Msa0506960:five_prime_UTR 30.0%
ATACACCTAAACACAAAAGT+TGG + chr3_4:53832275-53832294 None:intergenic 30.0%
! CAATTTGAACCCTCCATTTT+TGG - chr3_4:53830046-53830065 Msa0506960:three_prime_UTR 35.0%
TGAATGATCCCAAAAATGGA+GGG + chr3_4:53830058-53830077 None:intergenic 35.0%
ATGAATGATCCCAAAAATGG+AGG + chr3_4:53830059-53830078 None:intergenic 35.0%
! TTTGGGATCATTCATTTCCA+AGG - chr3_4:53830064-53830083 Msa0506960:three_prime_UTR 35.0%
TTGGGATCATTCATTTCCAA+GGG - chr3_4:53830065-53830084 Msa0506960:three_prime_UTR 35.0%
ATGTTAAGAAAGTCTACCCT+TGG + chr3_4:53830084-53830103 None:intergenic 35.0%
AATCCAACTTTGTCACAACA+AGG + chr3_4:53830142-53830161 None:intergenic 35.0%
GACAAAGTTGGATTGAAGAA+AGG - chr3_4:53830148-53830167 Msa0506960:three_prime_UTR 35.0%
GAAAAAGTTGCAGATTGAGA+TGG - chr3_4:53830632-53830651 Msa0506960:CDS 35.0%
TGAGATGGACAAATTACCTA+AGG - chr3_4:53830647-53830666 Msa0506960:CDS 35.0%
!!! AAAAGTCCTCTTTTTAGGTC+TGG + chr3_4:53830673-53830692 None:intergenic 35.0%
AACAGAGGAAACAGAGTAAA+TGG + chr3_4:53830763-53830782 None:intergenic 35.0%
ATGCAAAACAGAGAAAACAG+AGG + chr3_4:53830778-53830797 None:intergenic 35.0%
!!! GTTTTTTTCTCTCATGCAGA+TGG - chr3_4:53831444-53831463 Msa0506960:intron 35.0%
TAAAATTGCGTCTCATCTAC+CGG - chr3_4:53831469-53831488 Msa0506960:intron 35.0%
ATAGGTGAAGAAGATTGTTG+AGG + chr3_4:53831635-53831654 None:intergenic 35.0%
!!! TTTGTGGTTCCTTGTTTTTG+TGG + chr3_4:53831688-53831707 None:intergenic 35.0%
GATGACTCAAATGATGTTTC+TGG + chr3_4:53831713-53831732 None:intergenic 35.0%
!!! ACCACTTTTTGACTCAACAA+TGG - chr3_4:53831772-53831791 Msa0506960:intron 35.0%
TCCATTGTTGAGTCAAAAAG+TGG + chr3_4:53831776-53831795 None:intergenic 35.0%
TGATGTTGATGTTGATGTTG+TGG + chr3_4:53831885-53831904 None:intergenic 35.0%
CATGTGACCAATCAAAATCA+GGG + chr3_4:53831955-53831974 None:intergenic 35.0%
TCATGTGACCAATCAAAATC+AGG + chr3_4:53831956-53831975 None:intergenic 35.0%
! GTGATCAATGATGATGATGA+TGG - chr3_4:53832076-53832095 Msa0506960:intron 35.0%
TGATCATGGATTCAGAATCA+TGG - chr3_4:53832116-53832135 Msa0506960:CDS 35.0%
GATCATGGATTCAGAATCAT+GGG - chr3_4:53832117-53832136 Msa0506960:CDS 35.0%
!! TTTGTTGTTTCTCCTAGTCA+TGG - chr3_4:53832379-53832398 Msa0506960:five_prime_UTR 35.0%
AAAATAAGTGTGCCATGACT+AGG + chr3_4:53832394-53832413 None:intergenic 35.0%
! CAACCTTGTTGTGACAAAGT+TGG - chr3_4:53830136-53830155 Msa0506960:three_prime_UTR 40.0%
TTGGATTGAAGAAAGGACCA+TGG - chr3_4:53830155-53830174 Msa0506960:three_prime_UTR 40.0%
GAATTCATGCAGGGTTGTTA+AGG - chr3_4:53830605-53830624 Msa0506960:CDS 40.0%
ATTGATCTCCATGCTCAACT+TGG - chr3_4:53830718-53830737 Msa0506960:CDS 40.0%
TAATGACTTCATGGCCACTT+AGG + chr3_4:53831271-53831290 None:intergenic 40.0%
AAAATTGCGTCTCATCTACC+GGG - chr3_4:53831470-53831489 Msa0506960:intron 40.0%
! GAGAGTAACTTGTGTGTAAC+TGG + chr3_4:53831569-53831588 None:intergenic 40.0%
GATGAAGATGAAGGAACACA+TGG + chr3_4:53831860-53831879 None:intergenic 40.0%
!! GTTGTGGTTGATGAAGATGA+AGG + chr3_4:53831869-53831888 None:intergenic 40.0%
!! TGCTTCTCCCTGATTTTGAT+TGG - chr3_4:53831945-53831964 Msa0506960:intron 40.0%
!! TGATGATGATGATGGTGACA+AGG - chr3_4:53832084-53832103 Msa0506960:intron 40.0%
CAAGGATTCAAGAGTGATCA+TGG - chr3_4:53832102-53832121 Msa0506960:intron 40.0%
GAGGGAGATAGAGAGAAAGA+GGG + chr3_4:53830015-53830034 None:intergenic 45.0%
AGAGGGAGATAGAGAGAAAG+AGG + chr3_4:53830016-53830035 None:intergenic 45.0%
TTATCTTCCTCAGCAGTCCA+TGG + chr3_4:53830175-53830194 None:intergenic 45.0%
! AGGAGAGACCTGCTAGTTTA+GGG + chr3_4:53830249-53830268 None:intergenic 45.0%
! AAGGAGAGACCTGCTAGTTT+AGG + chr3_4:53830250-53830269 None:intergenic 45.0%
!!! CTCTTTTTAGGTCTGGCCTT+AGG + chr3_4:53830666-53830685 None:intergenic 45.0%
CTAAGGCCAGACCTAAAAAG+AGG - chr3_4:53830664-53830683 Msa0506960:CDS 45.0%
TCCATGCTCAACTTGGCAAT+AGG - chr3_4:53830725-53830744 Msa0506960:CDS 45.0%
! ACCTATTGCCAAGTTGAGCA+TGG + chr3_4:53830729-53830748 None:intergenic 45.0%
GATTCAGAATCATGGGCCTA+TGG - chr3_4:53832124-53832143 Msa0506960:CDS 45.0%
AGAGCTGTCCCTAAACTAGC+AGG - chr3_4:53830238-53830257 Msa0506960:CDS 50.0%
CATGCAGGGTTGTTAAGGTG+TGG - chr3_4:53830610-53830629 Msa0506960:CDS 50.0%
!! ATCTCATTGTCGGTTCGTCC+CGG + chr3_4:53831491-53831510 None:intergenic 50.0%
CAGGGAGAAGCAAGTCTTCA+AGG + chr3_4:53831937-53831956 None:intergenic 50.0%
! GAAAGGACCATGGACTGCTG+AGG - chr3_4:53830165-53830184 Msa0506960:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 53829951 53832416 53829951 ID=Msa0506960;Name=Msa0506960
chr3_4 mRNA 53829951 53832416 53829951 ID=Msa0506960-mRNA-1;Parent=Msa0506960;Name=Msa0506960-mRNA-1;_AED=0.12;_eAED=0.12;_QI=176|1|1|1|1|1|3|260|318
chr3_4 exon 53829951 53830904 53829951 ID=Msa0506960-mRNA-1:exon:11953;Parent=Msa0506960-mRNA-1
chr3_4 exon 53831621 53831750 53831621 ID=Msa0506960-mRNA-1:exon:11952;Parent=Msa0506960-mRNA-1
chr3_4 exon 53832108 53832416 53832108 ID=Msa0506960-mRNA-1:exon:11951;Parent=Msa0506960-mRNA-1
chr3_4 five_prime_UTR 53832241 53832416 53832241 ID=Msa0506960-mRNA-1:five_prime_utr;Parent=Msa0506960-mRNA-1
chr3_4 CDS 53832108 53832240 53832108 ID=Msa0506960-mRNA-1:cds;Parent=Msa0506960-mRNA-1
chr3_4 CDS 53831621 53831750 53831621 ID=Msa0506960-mRNA-1:cds;Parent=Msa0506960-mRNA-1
chr3_4 CDS 53830211 53830904 53830211 ID=Msa0506960-mRNA-1:cds;Parent=Msa0506960-mRNA-1
chr3_4 three_prime_UTR 53829951 53830210 53829951 ID=Msa0506960-mRNA-1:three_prime_utr;Parent=Msa0506960-mRNA-1
Gene Sequence

>Msa0506960

ATGGGAAGACAACCTTGTTGTGACAAAGTTGGATTGAAGAAAGGACCATGGACTGCTGAGGAAGATAAAAAGCTCATCAATTTCATCCTTACTAATGGTCAATGTTGTTGGAGAGCTGTCCCTAAACTAGCAGGGTTGTTAAGGTGTGGAAAAAGTTGCAGATTGAGATGGACAAATTACCTAAGGCCAGACCTAAAAAGAGGACTTTTATCAGAGTATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTTGGCAATAGATGGTCTAAAATTGCGTCTCATCTACCGGGACGAACCGACAATGAGATTAAGAATCATTGGAATACTCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCAGTTACACACAAGTTACTCTCTAATGCAACTATTGAGCAAACTCAAACACAATCTGAACAAGAACCTCAACAATCTTCTTCACCTATTGAAATGGAACACAATGTTGAATTTGAGAACCACAAAAACAAGGAACCACAAAAACCAGAAACATCATTTGAGTCATCAACAATAACTGAAGCTAAAGAACAAGACCAAATTATGACACCACTTTTTGACTCAACAATGGAACTAATGAATGAGTTATTCACTGAAGAAGTTCCTATAATAATACCAAATGAAATTCTAGTTCCATGTGTTCCTTCATCTTCATCAACCACAACATCAACATCAACATCATCAACTTCAAATTCAAATTCATCTAACTTCCTTGAAGACTTGCTTCTCCCTGATTTTGATTGGTCACATGATAATAATATTGAAAATAATAACTATAATGGAAATAGTGACAATAATAATAATATTAATATGACATTATGGGATGATGACTTTATTAGAAGTTGGGATTTTGTGATCAATGATGATGATGATGGTGACAAGGATTCAAGAGTGATCATGGATTCAGAATCATGGGCCTATGGATTATTTTGA
Protein sequence

>Msa0506960

MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKLLSNATIEQTQTQSEQEPQQSSSPIEMEHNVEFENHKNKEPQKPETSFESSTITEAKEQDQIMTPLFDSTMELMNELFTEEVPIIIPNEILVPCVPSSSSTTTSTSTSSTSNSNSSNFLEDLLLPDFDWSHDNNIENNNYNGNSDNNNNINMTLWDDDFIRSWDFVINDDDDGDKDSRVIMDSESWAYGLF*