Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507010 | XP_003600468.2 | 84.892 | 139 | 21 | 0 | 23 | 161 | 184 | 322 | 8.40e-66 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507010 | sp|Q945M9|NFYA9_ARATH | 41.718 | 163 | 61 | 7 | 8 | 161 | 159 | 296 | 8.75e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507010 | G7IYA5 | 84.892 | 139 | 21 | 0 | 23 | 161 | 184 | 322 | 4.01e-66 | 214 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0507010 | TF | NF-YA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507010 | MtrunA17_Chr3g0103391 | 84.892 | 139 | 21 | 0 | 23 | 161 | 184 | 322 | 7.72e-70 | 214 |
| Msa0507010 | MtrunA17_Chr3g0103331 | 95.238 | 42 | 2 | 0 | 1 | 42 | 1 | 42 | 5.33e-22 | 91.7 |
| Msa0507010 | MtrunA17_Chr3g0103321 | 86.957 | 46 | 6 | 0 | 1 | 46 | 1 | 46 | 1.03e-21 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507010 | AT3G20910.1 | 41.718 | 163 | 61 | 7 | 8 | 161 | 159 | 296 | 8.90e-20 | 84.0 |
| Msa0507010 | AT5G12840.4 | 50.000 | 84 | 37 | 2 | 24 | 107 | 189 | 267 | 8.06e-14 | 67.4 |
| Msa0507010 | AT5G12840.2 | 50.000 | 84 | 37 | 2 | 24 | 107 | 189 | 267 | 8.06e-14 | 67.4 |
| Msa0507010 | AT5G12840.5 | 50.000 | 84 | 37 | 2 | 24 | 107 | 190 | 268 | 8.39e-14 | 67.4 |
| Msa0507010 | AT5G12840.3 | 50.000 | 84 | 37 | 2 | 24 | 107 | 190 | 268 | 8.39e-14 | 67.4 |
| Msa0507010 | AT5G12840.1 | 50.000 | 84 | 37 | 2 | 24 | 107 | 190 | 268 | 8.39e-14 | 67.4 |
| Msa0507010 | AT3G13330.1 | 59.524 | 42 | 17 | 0 | 1 | 42 | 1 | 42 | 3.68e-11 | 60.8 |
Find 89 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTACCTTGGTTATCTTCT+TGG | 0.221503 | 3_4:-53899721 | Msa0507010:three_prime_UTR |
| GTATATCCTAGTGATATATT+TGG | 0.239472 | 3_4:-53899754 | Msa0507010:three_prime_UTR |
| GTGGAAGAAGGGGACTGTTC+AGG | 0.315135 | 3_4:-53899882 | Msa0507010:CDS |
| GCATACCATTGTTGTTAGTA+TGG | 0.321193 | 3_4:+53899931 | None:intergenic |
| GCCAAGCGGCAAATCATTCT+TGG | 0.327044 | 3_4:-53899688 | Msa0507010:three_prime_UTR |
| GTTTGTTCTGTAAACTTAAC+TGG | 0.332920 | 3_4:-53899427 | Msa0507010:three_prime_UTR |
| TACCAAACTCTCTTGTTTCA+TGG | 0.334052 | 3_4:-53899450 | Msa0507010:three_prime_UTR |
| TATGCAATCTTCAAGGTATC+AGG | 0.338770 | 3_4:-53899913 | Msa0507010:CDS |
| GTAGTCAACTTCAGCTGATA+TGG | 0.354835 | 3_4:-53899518 | Msa0507010:three_prime_UTR |
| GCAAGAGGAACAAACGAAAA+TGG | 0.355771 | 3_4:-53899966 | Msa0507010:CDS |
| TCGCATGTTGGGAGAATTCC+AGG | 0.360834 | 3_4:+53899995 | None:intergenic |
| ACCCATGAAACAAGAGAGTT+TGG | 0.366788 | 3_4:+53899448 | None:intergenic |
| AGAGTAGAATAAACGGATTC+GGG | 0.373601 | 3_4:+53901086 | None:intergenic |
| GAGAGTAGAATAAACGGATT+CGG | 0.379774 | 3_4:+53901085 | None:intergenic |
| CTTGCATCTTGTCGCATGTT+GGG | 0.394811 | 3_4:+53899984 | None:intergenic |
| TTCGGGATCGTCACGGTTGA+AGG | 0.401714 | 3_4:+53901103 | None:intergenic |
| ATGGTGTGAATGATATAATA+TGG | 0.403792 | 3_4:-53899648 | Msa0507010:three_prime_UTR |
| TCGCAATCAATTAGTTCATC+TGG | 0.408092 | 3_4:-53900050 | Msa0507010:CDS |
| GAAAACTGATGGTGAGGCCT+CGG | 0.419006 | 3_4:-53900105 | Msa0507010:CDS |
| GAGGCCTCGGGAAAGGATAA+TGG | 0.429841 | 3_4:-53900092 | Msa0507010:CDS |
| GCCAAGAATGATTTGCCGCT+TGG | 0.432263 | 3_4:+53899687 | None:intergenic |
| GGGGAGAAGAATGGTGATTG+GGG | 0.434696 | 3_4:-53899624 | Msa0507010:three_prime_UTR |
| TCTTGCATCTTGTCGCATGT+TGG | 0.437702 | 3_4:+53899983 | None:intergenic |
| TGTCTAGATTCATGAAGATA+TGG | 0.448950 | 3_4:+53900176 | None:intergenic |
| CTTCAGACTCTGCGGAAACC+TGG | 0.454407 | 3_4:-53900013 | Msa0507010:CDS |
| TGGTGTGAATGATATAATAT+GGG | 0.455479 | 3_4:-53899647 | Msa0507010:three_prime_UTR |
| ACCAAACTCTCTTGTTTCAT+GGG | 0.466458 | 3_4:-53899449 | Msa0507010:three_prime_UTR |
| TGGAAGAAGGGGACTGTTCA+GGG | 0.467131 | 3_4:-53899881 | Msa0507010:CDS |
| TTGAGAAGGGCAAGAGGCAC+CGG | 0.467176 | 3_4:-53900143 | Msa0507010:CDS |
| ATTGATTGCGACGACAAGAC+TGG | 0.480972 | 3_4:+53900062 | None:intergenic |
| CCTCTACGATGCCTCGTTCG+AGG | 0.487485 | 3_4:+53899839 | None:intergenic |
| CCGGCGGTTTGAGACGCCAC+TGG | 0.491542 | 3_4:+53901170 | None:intergenic |
| GCTGATATGGATGGATGGTC+AGG | 0.495169 | 3_4:-53899505 | Msa0507010:three_prime_UTR |
| AGCATCTATCCCTCCCATGC+AGG | 0.496351 | 3_4:+53899789 | None:intergenic |
| TCGGGAAAGGATAATGGCTC+TGG | 0.498937 | 3_4:-53900086 | Msa0507010:CDS |
| CAGGGTGAAAGAGTGGAAGA+AGG | 0.503255 | 3_4:-53899894 | Msa0507010:CDS |
| GTTTGAGACGCCACTGGTGG+CGG | 0.506912 | 3_4:+53901176 | None:intergenic |
| GTTCTGTAAACTTAACTGGT+TGG | 0.508613 | 3_4:-53899423 | Msa0507010:three_prime_UTR |
| TTTCTTTGCAAATCGTCCTC+CGG | 0.509061 | 3_4:+53900124 | None:intergenic |
| AAAACTGATGGTGAGGCCTC+GGG | 0.514204 | 3_4:-53900104 | Msa0507010:CDS |
| ACGGTTGAAGGAAGAGTTAA+CGG | 0.520754 | 3_4:+53901115 | None:intergenic |
| ACCATTGTTGTTAGTATGGT+AGG | 0.523686 | 3_4:+53899935 | None:intergenic |
| AGGGTGAAAGAGTGGAAGAA+GGG | 0.525419 | 3_4:-53899893 | Msa0507010:CDS |
| ACAATGGTATGCAATCTTCA+AGG | 0.528717 | 3_4:-53899920 | Msa0507010:CDS |
| TGATGGTGAGGCCTCGGGAA+AGG | 0.531610 | 3_4:-53900099 | Msa0507010:CDS |
| CTATCCCTCCCATGCAGGAA+GGG | 0.531759 | 3_4:+53899794 | None:intergenic |
| TGCATGGTTGCCGCCACCAG+TGG | 0.536142 | 3_4:-53901186 | Msa0507010:CDS |
| AGCGAATGAATCTCTTTCGC+CGG | 0.538984 | 3_4:+53901151 | None:intergenic |
| AAATGCATCTCTACAATGCA+TGG | 0.547105 | 3_4:-53901202 | Msa0507010:CDS |
| TCCCTCCCATGCAGGAAGGG+GGG | 0.551982 | 3_4:+53899797 | None:intergenic |
| CCAAGAAGATAACCAAGGTA+AGG | 0.553758 | 3_4:+53899721 | None:intergenic |
| TATCCCTCCCATGCAGGAAG+GGG | 0.555385 | 3_4:+53899795 | None:intergenic |
| GACATCAGCATGCTTTGAGA+AGG | 0.559068 | 3_4:-53900157 | Msa0507010:CDS |
| GGTGAATGAGTACCTTACCT+TGG | 0.559324 | 3_4:-53899733 | Msa0507010:three_prime_UTR |
| CATTCACCAAATATATCACT+AGG | 0.561969 | 3_4:+53899748 | None:intergenic |
| CAGGTTTCCGCAGAGTCTGA+AGG | 0.567519 | 3_4:+53900014 | None:intergenic |
| TCTATCCCTCCCATGCAGGA+AGG | 0.567765 | 3_4:+53899793 | None:intergenic |
| GGAGGGATAGATGCTGAGGT+TGG | 0.572326 | 3_4:-53899781 | Msa0507010:three_prime_UTR |
| ATCCCTCCCATGCAGGAAGG+GGG | 0.574613 | 3_4:+53899796 | None:intergenic |
| AAGGTATCAGGGTGAAAGAG+TGG | 0.579884 | 3_4:-53899901 | Msa0507010:CDS |
| TCAACTTCAGCTGATATGGA+TGG | 0.586528 | 3_4:-53899514 | Msa0507010:three_prime_UTR |
| TGCAAAGAAAACTGATGGTG+AGG | 0.591393 | 3_4:-53900111 | Msa0507010:CDS |
| GAATGAATCTCTTTCGCCGG+CGG | 0.591645 | 3_4:+53901154 | None:intergenic |
| CTTCAGCTGATATGGATGGA+TGG | 0.591845 | 3_4:-53899510 | Msa0507010:three_prime_UTR |
| GTGTGAATGATATAATATGG+GGG | 0.597919 | 3_4:-53899645 | Msa0507010:three_prime_UTR |
| ATGCAATCTTCAAGGTATCA+GGG | 0.599536 | 3_4:-53899912 | Msa0507010:CDS |
| AAACGGATTCGGGATCGTCA+CGG | 0.603559 | 3_4:+53901096 | None:intergenic |
| GGAACAAACGAAAATGGTGG+TGG | 0.605222 | 3_4:-53899960 | Msa0507010:CDS |
| CATGCTTTGAGAAGGGCAAG+AGG | 0.607747 | 3_4:-53900149 | Msa0507010:CDS |
| CCAGTGGCGTCTCAAACCGC+CGG | 0.618665 | 3_4:-53901170 | Msa0507010:CDS |
| ACATCAGCATGCTTTGAGAA+GGG | 0.618856 | 3_4:-53900156 | Msa0507010:CDS |
| GACTGTTCAGGGCAGCTACG+TGG | 0.623934 | 3_4:-53899870 | Msa0507010:CDS |
| CGATTTGCAAAGAAAACTGA+TGG | 0.624607 | 3_4:-53900116 | Msa0507010:CDS |
| GGTGTGAATGATATAATATG+GGG | 0.627186 | 3_4:-53899646 | Msa0507010:three_prime_UTR |
| GCGGTTTGAGACGCCACTGG+TGG | 0.630936 | 3_4:+53901173 | None:intergenic |
| AGAAGGGCAAGAGGCACCGG+AGG | 0.637214 | 3_4:-53900140 | Msa0507010:CDS |
| TGTGAATGATATAATATGGG+GGG | 0.639434 | 3_4:-53899644 | Msa0507010:three_prime_UTR |
| GGGTGAAAGAGTGGAAGAAG+GGG | 0.642943 | 3_4:-53899892 | Msa0507010:CDS |
| AGAGCCATTATCCTTTCCCG+AGG | 0.653284 | 3_4:+53900088 | None:intergenic |
| TCCTACCATACTAACAACAA+TGG | 0.657295 | 3_4:-53899936 | Msa0507010:CDS |
| CATGGGAGGGATAGATGCTG+AGG | 0.668925 | 3_4:-53899785 | Msa0507010:three_prime_UTR |
| TGGAAGCATCTCCTCGAACG+AGG | 0.669556 | 3_4:-53899850 | Msa0507010:CDS |
| GTGAATGATATAATATGGGG+GGG | 0.684869 | 3_4:-53899643 | Msa0507010:three_prime_UTR |
| CCTCGAACGAGGCATCGTAG+AGG | 0.699167 | 3_4:-53899839 | Msa0507010:exon |
| AGAGGAACAAACGAAAATGG+TGG | 0.699790 | 3_4:-53899963 | Msa0507010:CDS |
| AACATGCGACAAGATGCAAG+AGG | 0.701252 | 3_4:-53899981 | Msa0507010:CDS |
| TATTGCCAAGAAGATAACCA+AGG | 0.713577 | 3_4:+53899716 | None:intergenic |
| TTGGCAATATATATGCCAAG+CGG | 0.738010 | 3_4:-53899702 | Msa0507010:three_prime_UTR |
| GTTGAAGGAAGAGTTAACGG+TGG | 0.773498 | 3_4:+53901118 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGCTTATTTTTAATTAATTT+AGG | - | chr3_4:53899708-53899727 | Msa0507010:three_prime_UTR | 10.0% |
| !!! | TGCTTATTTTTAATTAATTT+AGG | - | chr3_4:53899708-53899727 | Msa0507010:three_prime_UTR | 10.0% |
| !! | AAAATTGAAGAGTTGAAAAA+TGG | + | chr3_4:53899574-53899593 | None:intergenic | 20.0% |
| !! | CTTAATTATGAGAGAAATAA+TGG | - | chr3_4:53900150-53900169 | Msa0507010:CDS | 20.0% |
| !! | AAAATTGAAGAGTTGAAAAA+TGG | + | chr3_4:53899574-53899593 | None:intergenic | 20.0% |
| !! | CTTAATTATGAGAGAAATAA+TGG | - | chr3_4:53900150-53900169 | Msa0507010:CDS | 20.0% |
| ! | GTATTTGAGAGTAGAATAAA+CGG | + | chr3_4:53899527-53899546 | None:intergenic | 25.0% |
| !!! | GGTAGTAGTTATTATTTTAG+TGG | - | chr3_4:53899729-53899748 | Msa0507010:three_prime_UTR | 25.0% |
| !!! | GATTTTTTCACTGTTTTGTA+AGG | - | chr3_4:53899886-53899905 | Msa0507010:CDS | 25.0% |
| ! | GTATATCCTAGTGATATATT+TGG | - | chr3_4:53900849-53900868 | Msa0507010:intron | 25.0% |
| ! | ATGGTGTGAATGATATAATA+TGG | - | chr3_4:53900955-53900974 | Msa0507010:intron | 25.0% |
| ! | TGGTGTGAATGATATAATAT+GGG | - | chr3_4:53900956-53900975 | Msa0507010:intron | 25.0% |
| ! | CAAAAATGAGAAAAGATTGA+AGG | + | chr3_4:53901043-53901062 | None:intergenic | 25.0% |
| ! | GTATTTGAGAGTAGAATAAA+CGG | + | chr3_4:53899527-53899546 | None:intergenic | 25.0% |
| !!! | GGTAGTAGTTATTATTTTAG+TGG | - | chr3_4:53899729-53899748 | Msa0507010:three_prime_UTR | 25.0% |
| !!! | GATTTTTTCACTGTTTTGTA+AGG | - | chr3_4:53899886-53899905 | Msa0507010:CDS | 25.0% |
| ! | GTATATCCTAGTGATATATT+TGG | - | chr3_4:53900849-53900868 | Msa0507010:intron | 25.0% |
| ! | ATGGTGTGAATGATATAATA+TGG | - | chr3_4:53900955-53900974 | Msa0507010:intron | 25.0% |
| ! | TGGTGTGAATGATATAATAT+GGG | - | chr3_4:53900956-53900975 | Msa0507010:intron | 25.0% |
| ! | CAAAAATGAGAAAAGATTGA+AGG | + | chr3_4:53901043-53901062 | None:intergenic | 25.0% |
| AGTTGAAAAATGGAACTAAC+AGG | + | chr3_4:53899564-53899583 | None:intergenic | 30.0% | |
| TACGAAATGTTGTCAATTAG+CGG | + | chr3_4:53900010-53900029 | None:intergenic | 30.0% | |
| TTGTTATATAGCAGCTATAG+CGG | + | chr3_4:53900103-53900122 | None:intergenic | 30.0% | |
| ACAGTCAGCTTAATTATGTT+TGG | - | chr3_4:53900122-53900141 | Msa0507010:CDS | 30.0% | |
| CAGTCAGCTTAATTATGTTT+GGG | - | chr3_4:53900123-53900142 | Msa0507010:CDS | 30.0% | |
| TATGCTCCTTCAATATAAAG+CGG | + | chr3_4:53900197-53900216 | None:intergenic | 30.0% | |
| TGTCTAGATTCATGAAGATA+TGG | + | chr3_4:53900430-53900449 | None:intergenic | 30.0% | |
| CATTCACCAAATATATCACT+AGG | + | chr3_4:53900858-53900877 | None:intergenic | 30.0% | |
| GGTGTGAATGATATAATATG+GGG | - | chr3_4:53900957-53900976 | Msa0507010:intron | 30.0% | |
| GTGTGAATGATATAATATGG+GGG | - | chr3_4:53900958-53900977 | Msa0507010:intron | 30.0% | |
| TGTGAATGATATAATATGGG+GGG | - | chr3_4:53900959-53900978 | Msa0507010:intron | 30.0% | |
| !! | CATTTTGTACAGAGTTTTAG+TGG | - | chr3_4:53901063-53901082 | Msa0507010:intron | 30.0% |
| GTTTGTTCTGTAAACTTAAC+TGG | - | chr3_4:53901176-53901195 | Msa0507010:CDS | 30.0% | |
| AGTTGAAAAATGGAACTAAC+AGG | + | chr3_4:53899564-53899583 | None:intergenic | 30.0% | |
| TACGAAATGTTGTCAATTAG+CGG | + | chr3_4:53900010-53900029 | None:intergenic | 30.0% | |
| TTGTTATATAGCAGCTATAG+CGG | + | chr3_4:53900103-53900122 | None:intergenic | 30.0% | |
| ACAGTCAGCTTAATTATGTT+TGG | - | chr3_4:53900122-53900141 | Msa0507010:CDS | 30.0% | |
| CAGTCAGCTTAATTATGTTT+GGG | - | chr3_4:53900123-53900142 | Msa0507010:CDS | 30.0% | |
| TATGCTCCTTCAATATAAAG+CGG | + | chr3_4:53900197-53900216 | None:intergenic | 30.0% | |
| TGTCTAGATTCATGAAGATA+TGG | + | chr3_4:53900430-53900449 | None:intergenic | 30.0% | |
| CATTCACCAAATATATCACT+AGG | + | chr3_4:53900858-53900877 | None:intergenic | 30.0% | |
| GGTGTGAATGATATAATATG+GGG | - | chr3_4:53900957-53900976 | Msa0507010:intron | 30.0% | |
| GTGTGAATGATATAATATGG+GGG | - | chr3_4:53900958-53900977 | Msa0507010:intron | 30.0% | |
| TGTGAATGATATAATATGGG+GGG | - | chr3_4:53900959-53900978 | Msa0507010:intron | 30.0% | |
| !! | CATTTTGTACAGAGTTTTAG+TGG | - | chr3_4:53901063-53901082 | Msa0507010:intron | 30.0% |
| GTTTGTTCTGTAAACTTAAC+TGG | - | chr3_4:53901176-53901195 | Msa0507010:CDS | 30.0% | |
| ! | AGAGTAGAATAAACGGATTC+GGG | + | chr3_4:53899520-53899539 | None:intergenic | 35.0% |
| ! | GAGAGTAGAATAAACGGATT+CGG | + | chr3_4:53899521-53899540 | None:intergenic | 35.0% |
| ! | TTTGTTGTGATCGAATTCGA+AGG | - | chr3_4:53899788-53899807 | Msa0507010:three_prime_UTR | 35.0% |
| !! | CTGAAACGTTATTGACTTCA+TGG | - | chr3_4:53899843-53899862 | Msa0507010:CDS | 35.0% |
| ATTGCCTGAGTGTGAAAAAT+AGG | - | chr3_4:53899926-53899945 | Msa0507010:CDS | 35.0% | |
| AATATCGAATCACGAAACTC+TGG | - | chr3_4:53900033-53900052 | Msa0507010:CDS | 35.0% | |
| ACTATACCACTATAGAGTAG+CGG | + | chr3_4:53900079-53900098 | None:intergenic | 35.0% | |
| GGACTCATGCAAGTAAAAAA+TGG | + | chr3_4:53900355-53900374 | None:intergenic | 35.0% | |
| GTCTCACTTGAAACATATTC+TGG | + | chr3_4:53900376-53900395 | None:intergenic | 35.0% | |
| CGATTTGCAAAGAAAACTGA+TGG | - | chr3_4:53900487-53900506 | Msa0507010:intron | 35.0% | |
| TCGCAATCAATTAGTTCATC+TGG | - | chr3_4:53900553-53900572 | Msa0507010:intron | 35.0% | |
| TCCTACCATACTAACAACAA+TGG | - | chr3_4:53900667-53900686 | Msa0507010:intron | 35.0% | |
| ! | ACCATTGTTGTTAGTATGGT+AGG | + | chr3_4:53900671-53900690 | None:intergenic | 35.0% |
| ! | GCATACCATTGTTGTTAGTA+TGG | + | chr3_4:53900675-53900694 | None:intergenic | 35.0% |
| ACAATGGTATGCAATCTTCA+AGG | - | chr3_4:53900683-53900702 | Msa0507010:intron | 35.0% | |
| ! | TATGCAATCTTCAAGGTATC+AGG | - | chr3_4:53900690-53900709 | Msa0507010:intron | 35.0% |
| ! | ATGCAATCTTCAAGGTATCA+GGG | - | chr3_4:53900691-53900710 | Msa0507010:intron | 35.0% |
| TATTGCCAAGAAGATAACCA+AGG | + | chr3_4:53900890-53900909 | None:intergenic | 35.0% | |
| TTGGCAATATATATGCCAAG+CGG | - | chr3_4:53900901-53900920 | Msa0507010:intron | 35.0% | |
| ! | GGCTTTTGTTCTTCTGTTTA+TGG | - | chr3_4:53900936-53900955 | Msa0507010:intron | 35.0% |
| GTGAATGATATAATATGGGG+GGG | - | chr3_4:53900960-53900979 | Msa0507010:intron | 35.0% | |
| ! | TACCAAACTCTCTTGTTTCA+TGG | - | chr3_4:53901153-53901172 | Msa0507010:CDS | 35.0% |
| ! | ACCAAACTCTCTTGTTTCAT+GGG | - | chr3_4:53901154-53901173 | Msa0507010:CDS | 35.0% |
| GTTCTGTAAACTTAACTGGT+TGG | - | chr3_4:53901180-53901199 | Msa0507010:CDS | 35.0% | |
| ! | AGAGTAGAATAAACGGATTC+GGG | + | chr3_4:53899520-53899539 | None:intergenic | 35.0% |
| ! | GAGAGTAGAATAAACGGATT+CGG | + | chr3_4:53899521-53899540 | None:intergenic | 35.0% |
| ! | TTTGTTGTGATCGAATTCGA+AGG | - | chr3_4:53899788-53899807 | Msa0507010:three_prime_UTR | 35.0% |
| !! | CTGAAACGTTATTGACTTCA+TGG | - | chr3_4:53899843-53899862 | Msa0507010:CDS | 35.0% |
| ATTGCCTGAGTGTGAAAAAT+AGG | - | chr3_4:53899926-53899945 | Msa0507010:CDS | 35.0% | |
| AATATCGAATCACGAAACTC+TGG | - | chr3_4:53900033-53900052 | Msa0507010:CDS | 35.0% | |
| ACTATACCACTATAGAGTAG+CGG | + | chr3_4:53900079-53900098 | None:intergenic | 35.0% | |
| GGACTCATGCAAGTAAAAAA+TGG | + | chr3_4:53900355-53900374 | None:intergenic | 35.0% | |
| GTCTCACTTGAAACATATTC+TGG | + | chr3_4:53900376-53900395 | None:intergenic | 35.0% | |
| CGATTTGCAAAGAAAACTGA+TGG | - | chr3_4:53900487-53900506 | Msa0507010:intron | 35.0% | |
| TCGCAATCAATTAGTTCATC+TGG | - | chr3_4:53900553-53900572 | Msa0507010:intron | 35.0% | |
| TCCTACCATACTAACAACAA+TGG | - | chr3_4:53900667-53900686 | Msa0507010:intron | 35.0% | |
| ! | ACCATTGTTGTTAGTATGGT+AGG | + | chr3_4:53900671-53900690 | None:intergenic | 35.0% |
| ! | GCATACCATTGTTGTTAGTA+TGG | + | chr3_4:53900675-53900694 | None:intergenic | 35.0% |
| ACAATGGTATGCAATCTTCA+AGG | - | chr3_4:53900683-53900702 | Msa0507010:intron | 35.0% | |
| ! | TATGCAATCTTCAAGGTATC+AGG | - | chr3_4:53900690-53900709 | Msa0507010:intron | 35.0% |
| ! | ATGCAATCTTCAAGGTATCA+GGG | - | chr3_4:53900691-53900710 | Msa0507010:intron | 35.0% |
| TATTGCCAAGAAGATAACCA+AGG | + | chr3_4:53900890-53900909 | None:intergenic | 35.0% | |
| TTGGCAATATATATGCCAAG+CGG | - | chr3_4:53900901-53900920 | Msa0507010:intron | 35.0% | |
| ! | GGCTTTTGTTCTTCTGTTTA+TGG | - | chr3_4:53900936-53900955 | Msa0507010:intron | 35.0% |
| GTGAATGATATAATATGGGG+GGG | - | chr3_4:53900960-53900979 | Msa0507010:intron | 35.0% | |
| ! | TACCAAACTCTCTTGTTTCA+TGG | - | chr3_4:53901153-53901172 | Msa0507010:CDS | 35.0% |
| ! | ACCAAACTCTCTTGTTTCAT+GGG | - | chr3_4:53901154-53901173 | Msa0507010:CDS | 35.0% |
| GTTCTGTAAACTTAACTGGT+TGG | - | chr3_4:53901180-53901199 | Msa0507010:CDS | 35.0% | |
| ACGGTTGAAGGAAGAGTTAA+CGG | + | chr3_4:53899491-53899510 | None:intergenic | 40.0% | |
| TGGAACTAACAGGTCAAGAA+CGG | + | chr3_4:53899554-53899573 | None:intergenic | 40.0% | |
| TGTGATCGAATTCGAAGGTT+TGG | - | chr3_4:53899793-53899812 | Msa0507010:three_prime_UTR | 40.0% | |
| !! | GTCTCCTATTTTTCACACTC+AGG | + | chr3_4:53899933-53899952 | None:intergenic | 40.0% |
| TTGTCAATTAGCGGCTATTG+TGG | + | chr3_4:53900001-53900020 | None:intergenic | 40.0% | |
| TGAATTCCGCTACTCTATAG+TGG | - | chr3_4:53900070-53900089 | Msa0507010:CDS | 40.0% | |
| CCATACATATGTGTCAGTGT+CGG | + | chr3_4:53900233-53900252 | None:intergenic | 40.0% | |
| !! | ACATCAGCATGCTTTGAGAA+GGG | - | chr3_4:53900447-53900466 | Msa0507010:intron | 40.0% |
| TTTCTTTGCAAATCGTCCTC+CGG | + | chr3_4:53900482-53900501 | None:intergenic | 40.0% | |
| ! | TGCAAAGAAAACTGATGGTG+AGG | - | chr3_4:53900492-53900511 | Msa0507010:intron | 40.0% |
| GCAAGAGGAACAAACGAAAA+TGG | - | chr3_4:53900637-53900656 | Msa0507010:intron | 40.0% | |
| AGAGGAACAAACGAAAATGG+TGG | - | chr3_4:53900640-53900659 | Msa0507010:intron | 40.0% | |
| CCAAGAAGATAACCAAGGTA+AGG | + | chr3_4:53900885-53900904 | None:intergenic | 40.0% | |
| CCTTACCTTGGTTATCTTCT+TGG | - | chr3_4:53900882-53900901 | Msa0507010:intron | 40.0% | |
| GTAGTCAACTTCAGCTGATA+TGG | - | chr3_4:53901085-53901104 | Msa0507010:intron | 40.0% | |
| TCAACTTCAGCTGATATGGA+TGG | - | chr3_4:53901089-53901108 | Msa0507010:intron | 40.0% | |
| ACCCATGAAACAAGAGAGTT+TGG | + | chr3_4:53901158-53901177 | None:intergenic | 40.0% | |
| ACGGTTGAAGGAAGAGTTAA+CGG | + | chr3_4:53899491-53899510 | None:intergenic | 40.0% | |
| TGGAACTAACAGGTCAAGAA+CGG | + | chr3_4:53899554-53899573 | None:intergenic | 40.0% | |
| TGTGATCGAATTCGAAGGTT+TGG | - | chr3_4:53899793-53899812 | Msa0507010:three_prime_UTR | 40.0% | |
| !! | GTCTCCTATTTTTCACACTC+AGG | + | chr3_4:53899933-53899952 | None:intergenic | 40.0% |
| TTGTCAATTAGCGGCTATTG+TGG | + | chr3_4:53900001-53900020 | None:intergenic | 40.0% | |
| TGAATTCCGCTACTCTATAG+TGG | - | chr3_4:53900070-53900089 | Msa0507010:CDS | 40.0% | |
| CCATACATATGTGTCAGTGT+CGG | + | chr3_4:53900233-53900252 | None:intergenic | 40.0% | |
| !! | ACATCAGCATGCTTTGAGAA+GGG | - | chr3_4:53900447-53900466 | Msa0507010:intron | 40.0% |
| TTTCTTTGCAAATCGTCCTC+CGG | + | chr3_4:53900482-53900501 | None:intergenic | 40.0% | |
| ! | TGCAAAGAAAACTGATGGTG+AGG | - | chr3_4:53900492-53900511 | Msa0507010:intron | 40.0% |
| GCAAGAGGAACAAACGAAAA+TGG | - | chr3_4:53900637-53900656 | Msa0507010:intron | 40.0% | |
| AGAGGAACAAACGAAAATGG+TGG | - | chr3_4:53900640-53900659 | Msa0507010:intron | 40.0% | |
| CCAAGAAGATAACCAAGGTA+AGG | + | chr3_4:53900885-53900904 | None:intergenic | 40.0% | |
| CCTTACCTTGGTTATCTTCT+TGG | - | chr3_4:53900882-53900901 | Msa0507010:intron | 40.0% | |
| GTAGTCAACTTCAGCTGATA+TGG | - | chr3_4:53901085-53901104 | Msa0507010:intron | 40.0% | |
| TCAACTTCAGCTGATATGGA+TGG | - | chr3_4:53901089-53901108 | Msa0507010:intron | 40.0% | |
| ACCCATGAAACAAGAGAGTT+TGG | + | chr3_4:53901158-53901177 | None:intergenic | 40.0% | |
| AGCGAATGAATCTCTTTCGC+CGG | + | chr3_4:53899455-53899474 | None:intergenic | 45.0% | |
| GTTGAAGGAAGAGTTAACGG+TGG | + | chr3_4:53899488-53899507 | None:intergenic | 45.0% | |
| !! | TCGAATTCGAAGGTTTGGTG+AGG | - | chr3_4:53899798-53899817 | Msa0507010:three_prime_UTR | 45.0% |
| ! | GTAGTTGTCACTTGCGGATA+GGG | - | chr3_4:53899956-53899975 | Msa0507010:CDS | 45.0% |
| ATCGAATCACGAAACTCTGG+TGG | - | chr3_4:53900036-53900055 | Msa0507010:CDS | 45.0% | |
| !! | GCAGTGCCGCTTTATATTGA+AGG | - | chr3_4:53900188-53900207 | Msa0507010:intron | 45.0% |
| CCGACACTGACACATATGTA+TGG | - | chr3_4:53900230-53900249 | Msa0507010:intron | 45.0% | |
| !! | GACATCAGCATGCTTTGAGA+AGG | - | chr3_4:53900446-53900465 | Msa0507010:intron | 45.0% |
| ATTGATTGCGACGACAAGAC+TGG | + | chr3_4:53900544-53900563 | None:intergenic | 45.0% | |
| ! | ACTTTTGCCTTCAGACTCTG+CGG | - | chr3_4:53900582-53900601 | Msa0507010:intron | 45.0% |
| CTTGCATCTTGTCGCATGTT+GGG | + | chr3_4:53900622-53900641 | None:intergenic | 45.0% | |
| TCTTGCATCTTGTCGCATGT+TGG | + | chr3_4:53900623-53900642 | None:intergenic | 45.0% | |
| AACATGCGACAAGATGCAAG+AGG | - | chr3_4:53900622-53900641 | Msa0507010:intron | 45.0% | |
| GGAACAAACGAAAATGGTGG+TGG | - | chr3_4:53900643-53900662 | Msa0507010:intron | 45.0% | |
| ! | AAGGTATCAGGGTGAAAGAG+TGG | - | chr3_4:53900702-53900721 | Msa0507010:intron | 45.0% |
| AGGGTGAAAGAGTGGAAGAA+GGG | - | chr3_4:53900710-53900729 | Msa0507010:intron | 45.0% | |
| GGTGAATGAGTACCTTACCT+TGG | - | chr3_4:53900870-53900889 | Msa0507010:intron | 45.0% | |
| TAATATGGGGGGGAGAAGAA+TGG | - | chr3_4:53900970-53900989 | Msa0507010:intron | 45.0% | |
| CTTCAGCTGATATGGATGGA+TGG | - | chr3_4:53901093-53901112 | Msa0507010:intron | 45.0% | |
| AGCGAATGAATCTCTTTCGC+CGG | + | chr3_4:53899455-53899474 | None:intergenic | 45.0% | |
| GTTGAAGGAAGAGTTAACGG+TGG | + | chr3_4:53899488-53899507 | None:intergenic | 45.0% | |
| !! | TCGAATTCGAAGGTTTGGTG+AGG | - | chr3_4:53899798-53899817 | Msa0507010:three_prime_UTR | 45.0% |
| ! | GTAGTTGTCACTTGCGGATA+GGG | - | chr3_4:53899956-53899975 | Msa0507010:CDS | 45.0% |
| ATCGAATCACGAAACTCTGG+TGG | - | chr3_4:53900036-53900055 | Msa0507010:CDS | 45.0% | |
| !! | GCAGTGCCGCTTTATATTGA+AGG | - | chr3_4:53900188-53900207 | Msa0507010:intron | 45.0% |
| CCGACACTGACACATATGTA+TGG | - | chr3_4:53900230-53900249 | Msa0507010:intron | 45.0% | |
| !! | GACATCAGCATGCTTTGAGA+AGG | - | chr3_4:53900446-53900465 | Msa0507010:intron | 45.0% |
| ATTGATTGCGACGACAAGAC+TGG | + | chr3_4:53900544-53900563 | None:intergenic | 45.0% | |
| ! | ACTTTTGCCTTCAGACTCTG+CGG | - | chr3_4:53900582-53900601 | Msa0507010:intron | 45.0% |
| CTTGCATCTTGTCGCATGTT+GGG | + | chr3_4:53900622-53900641 | None:intergenic | 45.0% | |
| TCTTGCATCTTGTCGCATGT+TGG | + | chr3_4:53900623-53900642 | None:intergenic | 45.0% | |
| AACATGCGACAAGATGCAAG+AGG | - | chr3_4:53900622-53900641 | Msa0507010:intron | 45.0% | |
| GGAACAAACGAAAATGGTGG+TGG | - | chr3_4:53900643-53900662 | Msa0507010:intron | 45.0% | |
| ! | AAGGTATCAGGGTGAAAGAG+TGG | - | chr3_4:53900702-53900721 | Msa0507010:intron | 45.0% |
| AGGGTGAAAGAGTGGAAGAA+GGG | - | chr3_4:53900710-53900729 | Msa0507010:intron | 45.0% | |
| GGTGAATGAGTACCTTACCT+TGG | - | chr3_4:53900870-53900889 | Msa0507010:intron | 45.0% | |
| TAATATGGGGGGGAGAAGAA+TGG | - | chr3_4:53900970-53900989 | Msa0507010:intron | 45.0% | |
| CTTCAGCTGATATGGATGGA+TGG | - | chr3_4:53901093-53901112 | Msa0507010:intron | 45.0% | |
| GAATGAATCTCTTTCGCCGG+CGG | + | chr3_4:53899452-53899471 | None:intergenic | 50.0% | |
| ! | AAACGGATTCGGGATCGTCA+CGG | + | chr3_4:53899510-53899529 | None:intergenic | 50.0% |
| ! | GACTGCGTAGTTGTCACTTG+CGG | - | chr3_4:53899950-53899969 | Msa0507010:CDS | 50.0% |
| ! | CGTAGTTGTCACTTGCGGAT+AGG | - | chr3_4:53899955-53899974 | Msa0507010:CDS | 50.0% |
| !! | CATGCTTTGAGAAGGGCAAG+AGG | - | chr3_4:53900454-53900473 | Msa0507010:intron | 50.0% |
| ! | GAAAACTGATGGTGAGGCCT+CGG | - | chr3_4:53900498-53900517 | Msa0507010:intron | 50.0% |
| ! | AAAACTGATGGTGAGGCCTC+GGG | - | chr3_4:53900499-53900518 | Msa0507010:intron | 50.0% |
| AGAGCCATTATCCTTTCCCG+AGG | + | chr3_4:53900518-53900537 | None:intergenic | 50.0% | |
| ! | TCGGGAAAGGATAATGGCTC+TGG | - | chr3_4:53900517-53900536 | Msa0507010:intron | 50.0% |
| TCGCATGTTGGGAGAATTCC+AGG | + | chr3_4:53900611-53900630 | None:intergenic | 50.0% | |
| CAGGGTGAAAGAGTGGAAGA+AGG | - | chr3_4:53900709-53900728 | Msa0507010:intron | 50.0% | |
| GGGTGAAAGAGTGGAAGAAG+GGG | - | chr3_4:53900711-53900730 | Msa0507010:intron | 50.0% | |
| TGGAAGAAGGGGACTGTTCA+GGG | - | chr3_4:53900722-53900741 | Msa0507010:intron | 50.0% | |
| GCCAAGCGGCAAATCATTCT+TGG | - | chr3_4:53900915-53900934 | Msa0507010:intron | 50.0% | |
| ! | GCCAAGAATGATTTGCCGCT+TGG | + | chr3_4:53900919-53900938 | None:intergenic | 50.0% |
| GGGGGAGAAGAATGGTGATT+GGG | - | chr3_4:53900978-53900997 | Msa0507010:intron | 50.0% | |
| GGGGAGAAGAATGGTGATTG+GGG | - | chr3_4:53900979-53900998 | Msa0507010:intron | 50.0% | |
| GCTGATATGGATGGATGGTC+AGG | - | chr3_4:53901098-53901117 | Msa0507010:intron | 50.0% | |
| GAATGAATCTCTTTCGCCGG+CGG | + | chr3_4:53899452-53899471 | None:intergenic | 50.0% | |
| ! | AAACGGATTCGGGATCGTCA+CGG | + | chr3_4:53899510-53899529 | None:intergenic | 50.0% |
| ! | GACTGCGTAGTTGTCACTTG+CGG | - | chr3_4:53899950-53899969 | Msa0507010:CDS | 50.0% |
| ! | CGTAGTTGTCACTTGCGGAT+AGG | - | chr3_4:53899955-53899974 | Msa0507010:CDS | 50.0% |
| !! | CATGCTTTGAGAAGGGCAAG+AGG | - | chr3_4:53900454-53900473 | Msa0507010:intron | 50.0% |
| ! | GAAAACTGATGGTGAGGCCT+CGG | - | chr3_4:53900498-53900517 | Msa0507010:intron | 50.0% |
| ! | AAAACTGATGGTGAGGCCTC+GGG | - | chr3_4:53900499-53900518 | Msa0507010:intron | 50.0% |
| AGAGCCATTATCCTTTCCCG+AGG | + | chr3_4:53900518-53900537 | None:intergenic | 50.0% | |
| ! | TCGGGAAAGGATAATGGCTC+TGG | - | chr3_4:53900517-53900536 | Msa0507010:intron | 50.0% |
| TCGCATGTTGGGAGAATTCC+AGG | + | chr3_4:53900611-53900630 | None:intergenic | 50.0% | |
| CAGGGTGAAAGAGTGGAAGA+AGG | - | chr3_4:53900709-53900728 | Msa0507010:intron | 50.0% | |
| GGGTGAAAGAGTGGAAGAAG+GGG | - | chr3_4:53900711-53900730 | Msa0507010:intron | 50.0% | |
| TGGAAGAAGGGGACTGTTCA+GGG | - | chr3_4:53900722-53900741 | Msa0507010:intron | 50.0% | |
| GCCAAGCGGCAAATCATTCT+TGG | - | chr3_4:53900915-53900934 | Msa0507010:intron | 50.0% | |
| ! | GCCAAGAATGATTTGCCGCT+TGG | + | chr3_4:53900919-53900938 | None:intergenic | 50.0% |
| GGGGGAGAAGAATGGTGATT+GGG | - | chr3_4:53900978-53900997 | Msa0507010:intron | 50.0% | |
| GGGGAGAAGAATGGTGATTG+GGG | - | chr3_4:53900979-53900998 | Msa0507010:intron | 50.0% | |
| GCTGATATGGATGGATGGTC+AGG | - | chr3_4:53901098-53901117 | Msa0507010:intron | 50.0% | |
| TTCGGGATCGTCACGGTTGA+AGG | + | chr3_4:53899503-53899522 | None:intergenic | 55.0% | |
| ! | TTGAGAAGGGCAAGAGGCAC+CGG | - | chr3_4:53900460-53900479 | Msa0507010:intron | 55.0% |
| GAGGCCTCGGGAAAGGATAA+TGG | - | chr3_4:53900511-53900530 | Msa0507010:intron | 55.0% | |
| CAGGTTTCCGCAGAGTCTGA+AGG | + | chr3_4:53900592-53900611 | None:intergenic | 55.0% | |
| CTTCAGACTCTGCGGAAACC+TGG | - | chr3_4:53900590-53900609 | Msa0507010:intron | 55.0% | |
| GTGGAAGAAGGGGACTGTTC+AGG | - | chr3_4:53900721-53900740 | Msa0507010:intron | 55.0% | |
| !! | TGGAAGCATCTCCTCGAACG+AGG | - | chr3_4:53900753-53900772 | Msa0507010:intron | 55.0% |
| TATCCCTCCCATGCAGGAAG+GGG | + | chr3_4:53900811-53900830 | None:intergenic | 55.0% | |
| CTATCCCTCCCATGCAGGAA+GGG | + | chr3_4:53900812-53900831 | None:intergenic | 55.0% | |
| TCTATCCCTCCCATGCAGGA+AGG | + | chr3_4:53900813-53900832 | None:intergenic | 55.0% | |
| AGCATCTATCCCTCCCATGC+AGG | + | chr3_4:53900817-53900836 | None:intergenic | 55.0% | |
| CATGGGAGGGATAGATGCTG+AGG | - | chr3_4:53900818-53900837 | Msa0507010:intron | 55.0% | |
| GGAGGGATAGATGCTGAGGT+TGG | - | chr3_4:53900822-53900841 | Msa0507010:intron | 55.0% | |
| GGGGGGAGAAGAATGGTGAT+TGG | - | chr3_4:53900977-53900996 | Msa0507010:intron | 55.0% | |
| TTCGGGATCGTCACGGTTGA+AGG | + | chr3_4:53899503-53899522 | None:intergenic | 55.0% | |
| ! | TTGAGAAGGGCAAGAGGCAC+CGG | - | chr3_4:53900460-53900479 | Msa0507010:intron | 55.0% |
| GAGGCCTCGGGAAAGGATAA+TGG | - | chr3_4:53900511-53900530 | Msa0507010:intron | 55.0% | |
| CAGGTTTCCGCAGAGTCTGA+AGG | + | chr3_4:53900592-53900611 | None:intergenic | 55.0% | |
| CTTCAGACTCTGCGGAAACC+TGG | - | chr3_4:53900590-53900609 | Msa0507010:intron | 55.0% | |
| GTGGAAGAAGGGGACTGTTC+AGG | - | chr3_4:53900721-53900740 | Msa0507010:intron | 55.0% | |
| !! | TGGAAGCATCTCCTCGAACG+AGG | - | chr3_4:53900753-53900772 | Msa0507010:intron | 55.0% |
| TATCCCTCCCATGCAGGAAG+GGG | + | chr3_4:53900811-53900830 | None:intergenic | 55.0% | |
| CTATCCCTCCCATGCAGGAA+GGG | + | chr3_4:53900812-53900831 | None:intergenic | 55.0% | |
| TCTATCCCTCCCATGCAGGA+AGG | + | chr3_4:53900813-53900832 | None:intergenic | 55.0% | |
| AGCATCTATCCCTCCCATGC+AGG | + | chr3_4:53900817-53900836 | None:intergenic | 55.0% | |
| CATGGGAGGGATAGATGCTG+AGG | - | chr3_4:53900818-53900837 | Msa0507010:intron | 55.0% | |
| GGAGGGATAGATGCTGAGGT+TGG | - | chr3_4:53900822-53900841 | Msa0507010:intron | 55.0% | |
| GGGGGGAGAAGAATGGTGAT+TGG | - | chr3_4:53900977-53900996 | Msa0507010:intron | 55.0% | |
| ! | GTTTGAGACGCCACTGGTGG+CGG | + | chr3_4:53899430-53899449 | None:intergenic | 60.0% |
| ! | TGATGGTGAGGCCTCGGGAA+AGG | - | chr3_4:53900504-53900523 | Msa0507010:intron | 60.0% |
| GACTGTTCAGGGCAGCTACG+TGG | - | chr3_4:53900733-53900752 | Msa0507010:intron | 60.0% | |
| CCTCTACGATGCCTCGTTCG+AGG | + | chr3_4:53900767-53900786 | None:intergenic | 60.0% | |
| !! | CCTCGAACGAGGCATCGTAG+AGG | - | chr3_4:53900764-53900783 | Msa0507010:intron | 60.0% |
| AGTAGACCCCCCTTCCTGCA+TGG | - | chr3_4:53900800-53900819 | Msa0507010:intron | 60.0% | |
| GTAGACCCCCCTTCCTGCAT+GGG | - | chr3_4:53900801-53900820 | Msa0507010:intron | 60.0% | |
| ATCCCTCCCATGCAGGAAGG+GGG | + | chr3_4:53900810-53900829 | None:intergenic | 60.0% | |
| ! | GTTTGAGACGCCACTGGTGG+CGG | + | chr3_4:53899430-53899449 | None:intergenic | 60.0% |
| ! | TGATGGTGAGGCCTCGGGAA+AGG | - | chr3_4:53900504-53900523 | Msa0507010:intron | 60.0% |
| GACTGTTCAGGGCAGCTACG+TGG | - | chr3_4:53900733-53900752 | Msa0507010:intron | 60.0% | |
| CCTCTACGATGCCTCGTTCG+AGG | + | chr3_4:53900767-53900786 | None:intergenic | 60.0% | |
| !! | CCTCGAACGAGGCATCGTAG+AGG | - | chr3_4:53900764-53900783 | Msa0507010:intron | 60.0% |
| AGTAGACCCCCCTTCCTGCA+TGG | - | chr3_4:53900800-53900819 | Msa0507010:intron | 60.0% | |
| GTAGACCCCCCTTCCTGCAT+GGG | - | chr3_4:53900801-53900820 | Msa0507010:intron | 60.0% | |
| ATCCCTCCCATGCAGGAAGG+GGG | + | chr3_4:53900810-53900829 | None:intergenic | 60.0% | |
| TGCATGGTTGCCGCCACCAG+TGG | - | chr3_4:53899417-53899436 | Msa0507010:three_prime_UTR | 65.0% | |
| ! | GCGGTTTGAGACGCCACTGG+TGG | + | chr3_4:53899433-53899452 | None:intergenic | 65.0% |
| CCAGTGGCGTCTCAAACCGC+CGG | - | chr3_4:53899433-53899452 | Msa0507010:three_prime_UTR | 65.0% | |
| !! | AGAAGGGCAAGAGGCACCGG+AGG | - | chr3_4:53900463-53900482 | Msa0507010:intron | 65.0% |
| ACCCCCCTTCCTGCATGGGA+GGG | - | chr3_4:53900805-53900824 | Msa0507010:intron | 65.0% | |
| TCCCTCCCATGCAGGAAGGG+GGG | + | chr3_4:53900809-53900828 | None:intergenic | 65.0% | |
| TGCATGGTTGCCGCCACCAG+TGG | - | chr3_4:53899417-53899436 | Msa0507010:three_prime_UTR | 65.0% | |
| ! | GCGGTTTGAGACGCCACTGG+TGG | + | chr3_4:53899433-53899452 | None:intergenic | 65.0% |
| CCAGTGGCGTCTCAAACCGC+CGG | - | chr3_4:53899433-53899452 | Msa0507010:three_prime_UTR | 65.0% | |
| !! | AGAAGGGCAAGAGGCACCGG+AGG | - | chr3_4:53900463-53900482 | Msa0507010:intron | 65.0% |
| ACCCCCCTTCCTGCATGGGA+GGG | - | chr3_4:53900805-53900824 | Msa0507010:intron | 65.0% | |
| TCCCTCCCATGCAGGAAGGG+GGG | + | chr3_4:53900809-53900828 | None:intergenic | 65.0% | |
| ! | CCGGCGGTTTGAGACGCCAC+TGG | + | chr3_4:53899436-53899455 | None:intergenic | 70.0% |
| GACCCCCCTTCCTGCATGGG+AGG | - | chr3_4:53900804-53900823 | Msa0507010:intron | 70.0% | |
| ! | CCGGCGGTTTGAGACGCCAC+TGG | + | chr3_4:53899436-53899455 | None:intergenic | 70.0% |
| GACCCCCCTTCCTGCATGGG+AGG | - | chr3_4:53900804-53900823 | Msa0507010:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 53899403 | 53901222 | 53899403 | ID=Msa0507010;Name=Msa0507010 |
| chr3_4 | mRNA | 53899403 | 53901222 | 53899403 | ID=Msa0507010-mRNA-1;Parent=Msa0507010;Name=Msa0507010-mRNA-1;_AED=0.10;_eAED=0.22;_QI=0|0|0.33|0.66|1|1|3|439|161 |
| chr3_4 | exon | 53899403 | 53900198 | 53899403 | ID=Msa0507010-mRNA-1:exon:11991;Parent=Msa0507010-mRNA-1 |
| chr3_4 | exon | 53900890 | 53900895 | 53900890 | ID=Msa0507010-mRNA-1:exon:11990;Parent=Msa0507010-mRNA-1 |
| chr3_4 | exon | 53901100 | 53901222 | 53901100 | ID=Msa0507010-mRNA-1:exon:11989;Parent=Msa0507010-mRNA-1 |
| chr3_4 | CDS | 53901100 | 53901222 | 53901100 | ID=Msa0507010-mRNA-1:cds;Parent=Msa0507010-mRNA-1 |
| chr3_4 | CDS | 53900890 | 53900895 | 53900890 | ID=Msa0507010-mRNA-1:cds;Parent=Msa0507010-mRNA-1 |
| chr3_4 | CDS | 53899842 | 53900198 | 53899842 | ID=Msa0507010-mRNA-1:cds;Parent=Msa0507010-mRNA-1 |
| chr3_4 | three_prime_UTR | 53899403 | 53899841 | 53899403 | ID=Msa0507010-mRNA-1:three_prime_utr;Parent=Msa0507010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
