Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507900 | AES97117.1 | 48.276 | 203 | 65 | 4 | 1 | 202 | 1 | 164 | 5.54e-46 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507900 | sp|Q9FKK2|AGL62_ARATH | 36.170 | 188 | 79 | 5 | 5 | 189 | 3 | 152 | 1.91e-22 | 95.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507900 | G7JZ38 | 48.276 | 203 | 65 | 4 | 1 | 202 | 1 | 164 | 2.65e-46 | 162 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0507900 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507900 | MtrunA17_Chr5g0419601 | 48.276 | 203 | 65 | 4 | 1 | 202 | 1 | 164 | 5.10e-50 | 162 |
| Msa0507900 | MtrunA17_Chr5g0422421 | 52.105 | 190 | 51 | 4 | 1 | 189 | 1 | 151 | 3.78e-49 | 160 |
| Msa0507900 | MtrunA17_Chr2g0317451 | 47.090 | 189 | 60 | 4 | 1 | 188 | 1 | 150 | 6.91e-45 | 149 |
| Msa0507900 | MtrunA17_Chr2g0317481 | 47.090 | 189 | 60 | 4 | 1 | 188 | 1 | 150 | 7.37e-45 | 149 |
| Msa0507900 | MtrunA17_Chr1g0187361 | 48.936 | 188 | 56 | 4 | 1 | 187 | 1 | 149 | 5.20e-44 | 147 |
| Msa0507900 | MtrunA17_Chr1g0206721 | 47.895 | 190 | 59 | 4 | 1 | 189 | 1 | 151 | 9.30e-44 | 146 |
| Msa0507900 | MtrunA17_Chr1g0188671 | 48.148 | 189 | 58 | 4 | 1 | 188 | 39 | 188 | 1.66e-43 | 147 |
| Msa0507900 | MtrunA17_Chr1g0206701 | 45.789 | 190 | 63 | 3 | 1 | 189 | 1 | 151 | 8.67e-43 | 144 |
| Msa0507900 | MtrunA17_Chr8g0355091 | 46.842 | 190 | 61 | 5 | 1 | 189 | 1 | 151 | 1.06e-42 | 144 |
| Msa0507900 | MtrunA17_Chr5g0422941 | 48.421 | 190 | 58 | 4 | 1 | 189 | 1 | 151 | 1.16e-42 | 144 |
| Msa0507900 | MtrunA17_Chr1g0149391 | 43.350 | 203 | 75 | 4 | 1 | 202 | 1 | 164 | 1.26e-40 | 138 |
| Msa0507900 | MtrunA17_Chr3g0089141 | 46.316 | 190 | 62 | 4 | 1 | 189 | 1 | 151 | 6.78e-40 | 136 |
| Msa0507900 | MtrunA17_Chr1g0206991 | 42.326 | 215 | 83 | 5 | 1 | 213 | 1 | 176 | 7.13e-40 | 135 |
| Msa0507900 | MtrunA17_Chr3g0099421 | 43.415 | 205 | 72 | 4 | 1 | 202 | 26 | 189 | 8.17e-40 | 137 |
| Msa0507900 | MtrunA17_Chr1g0208561 | 45.789 | 190 | 63 | 4 | 1 | 189 | 1 | 151 | 1.17e-39 | 135 |
| Msa0507900 | MtrunA17_Chr2g0292791 | 43.350 | 203 | 75 | 5 | 1 | 202 | 1 | 164 | 2.39e-39 | 135 |
| Msa0507900 | MtrunA17_Chr2g0325971 | 44.211 | 190 | 66 | 4 | 1 | 189 | 1 | 151 | 1.51e-35 | 125 |
| Msa0507900 | MtrunA17_Chr2g0300441 | 42.487 | 193 | 71 | 4 | 1 | 192 | 1 | 154 | 6.22e-35 | 124 |
| Msa0507900 | MtrunA17_Chr1g0208581 | 42.105 | 190 | 70 | 4 | 1 | 189 | 1 | 151 | 9.97e-35 | 123 |
| Msa0507900 | MtrunA17_Chr3g0099411 | 46.061 | 165 | 49 | 4 | 1 | 164 | 1 | 126 | 1.72e-30 | 112 |
| Msa0507900 | MtrunA17_Chr1g0206691 | 38.500 | 200 | 82 | 5 | 18 | 215 | 1 | 161 | 2.32e-28 | 106 |
| Msa0507900 | MtrunA17_Chr3g0089151 | 59.756 | 82 | 32 | 1 | 1 | 81 | 1 | 82 | 2.58e-26 | 98.6 |
| Msa0507900 | MtrunA17_Chr2g0300421 | 39.205 | 176 | 67 | 4 | 1 | 175 | 1 | 137 | 9.74e-23 | 90.5 |
| Msa0507900 | MtrunA17_Chr1g0187351 | 66.154 | 65 | 21 | 1 | 18 | 81 | 1 | 65 | 5.71e-21 | 83.2 |
| Msa0507900 | MtrunA17_Chr3g0111931 | 41.958 | 143 | 43 | 4 | 21 | 162 | 2 | 105 | 7.32e-21 | 84.0 |
| Msa0507900 | MtrunA17_Chr3g0119901 | 31.285 | 179 | 83 | 4 | 9 | 186 | 9 | 148 | 5.32e-19 | 81.6 |
| Msa0507900 | MtrunA17_Chr3g0085241 | 30.811 | 185 | 88 | 4 | 3 | 186 | 35 | 180 | 6.39e-19 | 82.4 |
| Msa0507900 | MtrunA17_Chr3g0111841 | 71.667 | 60 | 16 | 1 | 14 | 72 | 1 | 60 | 8.26e-19 | 77.4 |
| Msa0507900 | MtrunA17_Chr3g0111831 | 57.143 | 77 | 32 | 1 | 14 | 89 | 9 | 85 | 2.75e-16 | 71.2 |
| Msa0507900 | MtrunA17_Chr8g0379021 | 39.759 | 83 | 49 | 1 | 5 | 86 | 8 | 90 | 3.47e-14 | 68.2 |
| Msa0507900 | MtrunA17_Chr2g0333981 | 44.737 | 76 | 41 | 1 | 5 | 79 | 8 | 83 | 1.57e-13 | 66.2 |
| Msa0507900 | MtrunA17_Chr4g0018951 | 43.421 | 76 | 42 | 1 | 5 | 79 | 8 | 83 | 1.34e-11 | 60.8 |
| Msa0507900 | MtrunA17_Chr1g0175601 | 41.429 | 70 | 40 | 1 | 9 | 77 | 2 | 71 | 4.34e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507900 | AT5G60440.1 | 36.170 | 188 | 79 | 5 | 5 | 189 | 3 | 152 | 1.94e-23 | 95.9 |
| Msa0507900 | AT4G36590.1 | 55.556 | 72 | 31 | 1 | 5 | 75 | 3 | 74 | 5.75e-18 | 80.1 |
| Msa0507900 | AT2G24840.1 | 31.694 | 183 | 80 | 7 | 9 | 187 | 63 | 204 | 3.35e-15 | 72.8 |
| Msa0507900 | AT1G65360.1 | 51.389 | 72 | 34 | 1 | 5 | 75 | 3 | 74 | 1.36e-14 | 70.5 |
| Msa0507900 | AT1G01530.1 | 40.000 | 100 | 51 | 2 | 4 | 94 | 2 | 101 | 1.40e-12 | 65.5 |
| Msa0507900 | AT3G66656.1 | 36.364 | 88 | 55 | 1 | 9 | 95 | 2 | 89 | 3.37e-11 | 60.5 |
Find 37 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAACATATGCACCATAAA+AGG | 0.235469 | 3_4:-55552038 | None:intergenic |
| TTTATGACTGTTTCAACATT+TGG | 0.306851 | 3_4:-55552106 | None:intergenic |
| GGTGAGAAGGTAATTTCATT+TGG | 0.335642 | 3_4:+55552079 | Msa0507900:CDS |
| TGGGAGATTGGGCAACTAAA+AGG | 0.371348 | 3_4:-55552761 | Msa0507910:CDS |
| CAAAAGTTGGAATGGGAGAT+TGG | 0.377609 | 3_4:-55552773 | Msa0507910:CDS |
| TTGTGGAGTTGTCCCATTGA+TGG | 0.385726 | 3_4:+55552695 | Msa0507900:CDS |
| GCTTCGAGAAAGTCACTTGC+AGG | 0.392864 | 3_4:-55551975 | None:intergenic |
| CGTTAAGCTTGTAAGACAAC+TGG | 0.405172 | 3_4:-55552804 | Msa0507910:CDS |
| TTCTTGAATAATTCAAAAGT+TGG | 0.412258 | 3_4:-55552260 | None:intergenic |
| GATCATATTCATCCCATCAA+TGG | 0.434719 | 3_4:-55552708 | Msa0507910:CDS |
| AAAAGTTGGAATGGGAGATT+GGG | 0.456782 | 3_4:-55552772 | Msa0507910:CDS |
| CATAAATCGTTATCTCTCTC+AGG | 0.464955 | 3_4:+55552123 | Msa0507900:CDS |
| TATGAAACAAAAGTTGGAAT+GGG | 0.473888 | 3_4:-55552780 | Msa0507910:CDS |
| ACTGGATATGAAACAAAAGT+TGG | 0.475138 | 3_4:-55552786 | Msa0507910:CDS |
| TGTGGAGTTGTCCCATTGAT+GGG | 0.481370 | 3_4:+55552696 | Msa0507900:CDS |
| ATCATATTCATCCCATCAAT+GGG | 0.496247 | 3_4:-55552707 | Msa0507910:CDS |
| ATCATATTCATCATACCAAT+GGG | 0.500963 | 3_4:-55552237 | None:intergenic |
| CTGTGTTGAATAATTCAAGT+TGG | 0.502853 | 3_4:-55552730 | Msa0507910:CDS |
| CTTTCTCGAAGCGCCGCAGT+GGG | 0.517223 | 3_4:-55552550 | None:intergenic |
| GCAACATATGCACCATAAAA+GGG | 0.523262 | 3_4:-55552037 | None:intergenic |
| GATCATATTCATCATACCAA+TGG | 0.527076 | 3_4:-55552238 | None:intergenic |
| ATATGAAACAAAAGTTGGAA+TGG | 0.543477 | 3_4:-55552781 | Msa0507910:CDS |
| AGCAAGCTTTGCACCCTCTG+TGG | 0.545328 | 3_4:-55552512 | None:intergenic |
| ACTTTCTCGAAGCGCCGCAG+TGG | 0.564118 | 3_4:-55552551 | None:intergenic |
| TATATTCTCACCTGGTGAGA+AGG | 0.565372 | 3_4:+55552066 | Msa0507900:CDS |
| AAGCAATAAAAGCAACCTGC+AGG | 0.570115 | 3_4:-55552576 | None:intergenic |
| GCTTCGAGAAAGTCACCTGC+AGG | 0.571702 | 3_4:+55552561 | Msa0507900:CDS |
| ACTGACTCAGCTTATTCCAA+TGG | 0.580712 | 3_4:-55552646 | None:intergenic |
| TAGACATCGAGAAGAACCAT+TGG | 0.596119 | 3_4:+55552630 | Msa0507900:CDS |
| AATGAAATTACCTTCTCACC+AGG | 0.605098 | 3_4:-55552076 | None:intergenic |
| GCTCTAATTATATTCTCACC+TGG | 0.609848 | 3_4:+55552058 | Msa0507900:CDS |
| AGCAACATATGCACCACAGA+GGG | 0.625524 | 3_4:+55552499 | Msa0507900:CDS |
| TGTGCTTCAGCCATGTCGAG+CGG | 0.630136 | 3_4:+55551895 | None:intergenic |
| TCAGTTGCGAAAGAAGAATG+AGG | 0.642189 | 3_4:+55552664 | Msa0507900:CDS |
| TCGAGCGGAAAGAAAACTCG+AGG | 0.680063 | 3_4:+55551910 | Msa0507900:CDS |
| GAGCAACATATGCACCACAG+AGG | 0.750197 | 3_4:+55552498 | Msa0507900:CDS |
| CTTTCGTGAAGAGCCCACTG+CGG | 0.762759 | 3_4:+55552537 | Msa0507900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTGAATAATTCAAAAGT+TGG | - | chr3_4:55552263-55552282 | None:intergenic | 20.0% |
| !! | TTCTTGAATAATTCAAAAGT+TGG | - | chr3_4:55552263-55552282 | None:intergenic | 20.0% |
| !!! | TCTTTTTCATCACAATCTTT+TGG | - | chr3_4:55551939-55551958 | None:intergenic | 25.0% |
| ! | TTTATGACTGTTTCAACATT+TGG | - | chr3_4:55552109-55552128 | None:intergenic | 25.0% |
| ! | ATCATATTCATCATACCAAT+GGG | - | chr3_4:55552240-55552259 | None:intergenic | 25.0% |
| ! | TATGAAACAAAAGTTGGAAT+GGG | - | chr3_4:55552783-55552802 | Msa0507910:CDS | 25.0% |
| ! | ATATGAAACAAAAGTTGGAA+TGG | - | chr3_4:55552784-55552803 | Msa0507910:CDS | 25.0% |
| !!! | TCTTTTTCATCACAATCTTT+TGG | - | chr3_4:55551939-55551958 | None:intergenic | 25.0% |
| ! | TTTATGACTGTTTCAACATT+TGG | - | chr3_4:55552109-55552128 | None:intergenic | 25.0% |
| ! | ATCATATTCATCATACCAAT+GGG | - | chr3_4:55552240-55552259 | None:intergenic | 25.0% |
| ! | TATGAAACAAAAGTTGGAAT+GGG | - | chr3_4:55552783-55552802 | Msa0507910:CDS | 25.0% |
| ! | ATATGAAACAAAAGTTGGAA+TGG | - | chr3_4:55552784-55552803 | Msa0507910:CDS | 25.0% |
| GATCATATTCATCATACCAA+TGG | - | chr3_4:55552241-55552260 | None:intergenic | 30.0% | |
| ATCATATTCATCCCATCAAT+GGG | - | chr3_4:55552710-55552729 | Msa0507910:CDS | 30.0% | |
| CTGTGTTGAATAATTCAAGT+TGG | - | chr3_4:55552733-55552752 | Msa0507910:CDS | 30.0% | |
| ACTGGATATGAAACAAAAGT+TGG | - | chr3_4:55552789-55552808 | Msa0507910:CDS | 30.0% | |
| GATCATATTCATCATACCAA+TGG | - | chr3_4:55552241-55552260 | None:intergenic | 30.0% | |
| ATCATATTCATCCCATCAAT+GGG | - | chr3_4:55552710-55552729 | Msa0507910:CDS | 30.0% | |
| CTGTGTTGAATAATTCAAGT+TGG | - | chr3_4:55552733-55552752 | Msa0507910:CDS | 30.0% | |
| ACTGGATATGAAACAAAAGT+TGG | - | chr3_4:55552789-55552808 | Msa0507910:CDS | 30.0% | |
| GCAACATATGCACCATAAAA+GGG | - | chr3_4:55552040-55552059 | None:intergenic | 35.0% | |
| AGCAACATATGCACCATAAA+AGG | - | chr3_4:55552041-55552060 | None:intergenic | 35.0% | |
| GCTCTAATTATATTCTCACC+TGG | + | chr3_4:55552058-55552077 | Msa0507900:CDS | 35.0% | |
| AATGAAATTACCTTCTCACC+AGG | - | chr3_4:55552079-55552098 | None:intergenic | 35.0% | |
| GGTGAGAAGGTAATTTCATT+TGG | + | chr3_4:55552079-55552098 | Msa0507900:CDS | 35.0% | |
| CATAAATCGTTATCTCTCTC+AGG | + | chr3_4:55552123-55552142 | Msa0507900:CDS | 35.0% | |
| !! | TGCATCATGCCATTGTTTTA+GGG | - | chr3_4:55552154-55552173 | None:intergenic | 35.0% |
| ! | TTGCATCATGCCATTGTTTT+AGG | - | chr3_4:55552155-55552174 | None:intergenic | 35.0% |
| ! | TTTTTGTAGACTCTTCCCAT+TGG | + | chr3_4:55552222-55552241 | Msa0507900:intron | 35.0% |
| ATCATATTCGACCCATCAAT+GGG | + | chr3_4:55552306-55552325 | Msa0507900:intron | 35.0% | |
| TTTATGACCGTTTCAACACT+TGG | + | chr3_4:55552431-55552450 | Msa0507900:intron | 35.0% | |
| !!! | GGTGAGAAGGTATTTTCATT+TGG | - | chr3_4:55552461-55552480 | None:intergenic | 35.0% |
| AATGAAAATACCTTCTCACC+AGG | + | chr3_4:55552461-55552480 | Msa0507900:intron | 35.0% | |
| GCTCTAATTATATTCTCACC+TGG | - | chr3_4:55552058-55552077 | None:intergenic | 35.0% | |
| !!! | AGAATGAGGCTCATTTTTTG+TGG | + | chr3_4:55552678-55552697 | Msa0507900:CDS | 35.0% |
| GATCATATTCATCCCATCAA+TGG | - | chr3_4:55552711-55552730 | Msa0507910:CDS | 35.0% | |
| AAAAGTTGGAATGGGAGATT+GGG | - | chr3_4:55552775-55552794 | Msa0507910:CDS | 35.0% | |
| GCAACATATGCACCATAAAA+GGG | - | chr3_4:55552040-55552059 | None:intergenic | 35.0% | |
| AGCAACATATGCACCATAAA+AGG | - | chr3_4:55552041-55552060 | None:intergenic | 35.0% | |
| GCTCTAATTATATTCTCACC+TGG | + | chr3_4:55552058-55552077 | Msa0507900:CDS | 35.0% | |
| AATGAAATTACCTTCTCACC+AGG | - | chr3_4:55552079-55552098 | None:intergenic | 35.0% | |
| GGTGAGAAGGTAATTTCATT+TGG | + | chr3_4:55552079-55552098 | Msa0507900:CDS | 35.0% | |
| CATAAATCGTTATCTCTCTC+AGG | + | chr3_4:55552123-55552142 | Msa0507900:CDS | 35.0% | |
| !! | TGCATCATGCCATTGTTTTA+GGG | - | chr3_4:55552154-55552173 | None:intergenic | 35.0% |
| ! | TTGCATCATGCCATTGTTTT+AGG | - | chr3_4:55552155-55552174 | None:intergenic | 35.0% |
| ! | TTTTTGTAGACTCTTCCCAT+TGG | + | chr3_4:55552222-55552241 | Msa0507900:intron | 35.0% |
| ATCATATTCGACCCATCAAT+GGG | + | chr3_4:55552306-55552325 | Msa0507900:intron | 35.0% | |
| TTTATGACCGTTTCAACACT+TGG | + | chr3_4:55552431-55552450 | Msa0507900:intron | 35.0% | |
| !!! | GGTGAGAAGGTATTTTCATT+TGG | - | chr3_4:55552461-55552480 | None:intergenic | 35.0% |
| AATGAAAATACCTTCTCACC+AGG | + | chr3_4:55552461-55552480 | Msa0507900:intron | 35.0% | |
| GCTCTAATTATATTCTCACC+TGG | - | chr3_4:55552058-55552077 | None:intergenic | 35.0% | |
| !!! | AGAATGAGGCTCATTTTTTG+TGG | + | chr3_4:55552678-55552697 | Msa0507900:CDS | 35.0% |
| GATCATATTCATCCCATCAA+TGG | - | chr3_4:55552711-55552730 | Msa0507910:CDS | 35.0% | |
| AAAAGTTGGAATGGGAGATT+GGG | - | chr3_4:55552775-55552794 | Msa0507910:CDS | 35.0% | |
| TATATTCTCACCTGGTGAGA+AGG | + | chr3_4:55552066-55552085 | Msa0507900:CDS | 40.0% | |
| !!! | ATCATGCCATTGTTTTAGGG+TGG | - | chr3_4:55552151-55552170 | None:intergenic | 40.0% |
| TGGCATGATGCAATTCATTG+AGG | + | chr3_4:55552162-55552181 | Msa0507900:intron | 40.0% | |
| ! | GAATTGAGCTTGCACACTTT+TGG | - | chr3_4:55552200-55552219 | None:intergenic | 40.0% |
| GATCATATTCGACCCATCAA+TGG | + | chr3_4:55552305-55552324 | Msa0507900:intron | 40.0% | |
| ! | TTGCATCACGCCATTGTTTT+AGG | + | chr3_4:55552385-55552404 | Msa0507900:intron | 40.0% |
| !! | TGCATCACGCCATTGTTTTA+GGG | + | chr3_4:55552386-55552405 | Msa0507900:intron | 40.0% |
| CAGTTTCCACCCTAAAACAA+TGG | - | chr3_4:55552398-55552417 | None:intergenic | 40.0% | |
| !! | TGGTCAACCAAGTGTTGAAA+CGG | - | chr3_4:55552441-55552460 | None:intergenic | 40.0% |
| TATATTCTCACCTGGTGAGA+AGG | - | chr3_4:55552066-55552085 | None:intergenic | 40.0% | |
| AAGCAATAAAAGCAACCTGC+AGG | - | chr3_4:55552579-55552598 | None:intergenic | 40.0% | |
| TAGACATCGAGAAGAACCAT+TGG | + | chr3_4:55552630-55552649 | Msa0507900:CDS | 40.0% | |
| ! | ACTGACTCAGCTTATTCCAA+TGG | - | chr3_4:55552649-55552668 | None:intergenic | 40.0% |
| TCAGTTGCGAAAGAAGAATG+AGG | + | chr3_4:55552664-55552683 | Msa0507900:CDS | 40.0% | |
| CAAAAGTTGGAATGGGAGAT+TGG | - | chr3_4:55552776-55552795 | Msa0507910:CDS | 40.0% | |
| CGTTAAGCTTGTAAGACAAC+TGG | - | chr3_4:55552807-55552826 | Msa0507910:CDS | 40.0% | |
| TATATTCTCACCTGGTGAGA+AGG | + | chr3_4:55552066-55552085 | Msa0507900:CDS | 40.0% | |
| !!! | ATCATGCCATTGTTTTAGGG+TGG | - | chr3_4:55552151-55552170 | None:intergenic | 40.0% |
| TGGCATGATGCAATTCATTG+AGG | + | chr3_4:55552162-55552181 | Msa0507900:intron | 40.0% | |
| ! | GAATTGAGCTTGCACACTTT+TGG | - | chr3_4:55552200-55552219 | None:intergenic | 40.0% |
| GATCATATTCGACCCATCAA+TGG | + | chr3_4:55552305-55552324 | Msa0507900:intron | 40.0% | |
| ! | TTGCATCACGCCATTGTTTT+AGG | + | chr3_4:55552385-55552404 | Msa0507900:intron | 40.0% |
| !! | TGCATCACGCCATTGTTTTA+GGG | + | chr3_4:55552386-55552405 | Msa0507900:intron | 40.0% |
| CAGTTTCCACCCTAAAACAA+TGG | - | chr3_4:55552398-55552417 | None:intergenic | 40.0% | |
| !! | TGGTCAACCAAGTGTTGAAA+CGG | - | chr3_4:55552441-55552460 | None:intergenic | 40.0% |
| TATATTCTCACCTGGTGAGA+AGG | - | chr3_4:55552066-55552085 | None:intergenic | 40.0% | |
| AAGCAATAAAAGCAACCTGC+AGG | - | chr3_4:55552579-55552598 | None:intergenic | 40.0% | |
| TAGACATCGAGAAGAACCAT+TGG | + | chr3_4:55552630-55552649 | Msa0507900:CDS | 40.0% | |
| ! | ACTGACTCAGCTTATTCCAA+TGG | - | chr3_4:55552649-55552668 | None:intergenic | 40.0% |
| TCAGTTGCGAAAGAAGAATG+AGG | + | chr3_4:55552664-55552683 | Msa0507900:CDS | 40.0% | |
| CAAAAGTTGGAATGGGAGAT+TGG | - | chr3_4:55552776-55552795 | Msa0507910:CDS | 40.0% | |
| CGTTAAGCTTGTAAGACAAC+TGG | - | chr3_4:55552807-55552826 | Msa0507910:CDS | 40.0% | |
| CAGGTTCCACCCTAAAACAA+TGG | + | chr3_4:55552142-55552161 | Msa0507900:intron | 45.0% | |
| ! | AAAGTGCGCAAGCTCGTTTT+TGG | - | chr3_4:55552341-55552360 | None:intergenic | 45.0% |
| TGGCGTGATGCAATTCATTG+AGG | - | chr3_4:55552378-55552397 | None:intergenic | 45.0% | |
| !!! | ATCACGCCATTGTTTTAGGG+TGG | + | chr3_4:55552389-55552408 | Msa0507900:intron | 45.0% |
| AGCAACATATGCACCACAGA+GGG | + | chr3_4:55552499-55552518 | Msa0507900:CDS | 45.0% | |
| TTGTGGAGTTGTCCCATTGA+TGG | + | chr3_4:55552695-55552714 | Msa0507900:CDS | 45.0% | |
| TGTGGAGTTGTCCCATTGAT+GGG | + | chr3_4:55552696-55552715 | Msa0507900:CDS | 45.0% | |
| TGGGAGATTGGGCAACTAAA+AGG | - | chr3_4:55552764-55552783 | Msa0507910:CDS | 45.0% | |
| CAGGTTCCACCCTAAAACAA+TGG | + | chr3_4:55552142-55552161 | Msa0507900:intron | 45.0% | |
| ! | AAAGTGCGCAAGCTCGTTTT+TGG | - | chr3_4:55552341-55552360 | None:intergenic | 45.0% |
| TGGCGTGATGCAATTCATTG+AGG | - | chr3_4:55552378-55552397 | None:intergenic | 45.0% | |
| !!! | ATCACGCCATTGTTTTAGGG+TGG | + | chr3_4:55552389-55552408 | Msa0507900:intron | 45.0% |
| AGCAACATATGCACCACAGA+GGG | + | chr3_4:55552499-55552518 | Msa0507900:CDS | 45.0% | |
| TTGTGGAGTTGTCCCATTGA+TGG | + | chr3_4:55552695-55552714 | Msa0507900:CDS | 45.0% | |
| TGTGGAGTTGTCCCATTGAT+GGG | + | chr3_4:55552696-55552715 | Msa0507900:CDS | 45.0% | |
| TGGGAGATTGGGCAACTAAA+AGG | - | chr3_4:55552764-55552783 | Msa0507910:CDS | 45.0% | |
| TCGAGCGGAAAGAAAACTCG+AGG | + | chr3_4:55551910-55551929 | Msa0507900:CDS | 50.0% | |
| GCTTCGAGAAAGTCACTTGC+AGG | - | chr3_4:55551978-55551997 | None:intergenic | 50.0% | |
| !! | ACTTTCTCGAAGCGTCGTAG+TGG | + | chr3_4:55551985-55552004 | Msa0507900:intron | 50.0% |
| ! | GCGAGCTTTGCACCCTTTTA+TGG | + | chr3_4:55552025-55552044 | Msa0507900:CDS | 50.0% |
| ! | CTTGCACACTTTTGGCGCTA+CGG | - | chr3_4:55552192-55552211 | None:intergenic | 50.0% |
| GGTGGAGTTGTCCCATTGAT+GGG | - | chr3_4:55552320-55552339 | None:intergenic | 50.0% | |
| TGGTGGAGTTGTCCCATTGA+TGG | - | chr3_4:55552321-55552340 | None:intergenic | 50.0% | |
| GAGCAACATATGCACCACAG+AGG | + | chr3_4:55552498-55552517 | Msa0507900:CDS | 50.0% | |
| TCGAGCGGAAAGAAAACTCG+AGG | + | chr3_4:55551910-55551929 | Msa0507900:CDS | 50.0% | |
| GCTTCGAGAAAGTCACTTGC+AGG | - | chr3_4:55551978-55551997 | None:intergenic | 50.0% | |
| !! | ACTTTCTCGAAGCGTCGTAG+TGG | + | chr3_4:55551985-55552004 | Msa0507900:intron | 50.0% |
| ! | GCGAGCTTTGCACCCTTTTA+TGG | + | chr3_4:55552025-55552044 | Msa0507900:CDS | 50.0% |
| ! | CTTGCACACTTTTGGCGCTA+CGG | - | chr3_4:55552192-55552211 | None:intergenic | 50.0% |
| GGTGGAGTTGTCCCATTGAT+GGG | - | chr3_4:55552320-55552339 | None:intergenic | 50.0% | |
| TGGTGGAGTTGTCCCATTGA+TGG | - | chr3_4:55552321-55552340 | None:intergenic | 50.0% | |
| GAGCAACATATGCACCACAG+AGG | + | chr3_4:55552498-55552517 | Msa0507900:CDS | 50.0% | |
| !! | GTGCGCAAGCTCGTTTTTGG+TGG | - | chr3_4:55552338-55552357 | None:intergenic | 55.0% |
| AGCAAGCTTTGCACCCTCTG+TGG | - | chr3_4:55552515-55552534 | None:intergenic | 55.0% | |
| CTTTCGTGAAGAGCCCACTG+CGG | + | chr3_4:55552537-55552556 | Msa0507900:CDS | 55.0% | |
| GCTTCGAGAAAGTCACCTGC+AGG | + | chr3_4:55552561-55552580 | Msa0507900:CDS | 55.0% | |
| !! | GTGCGCAAGCTCGTTTTTGG+TGG | - | chr3_4:55552338-55552357 | None:intergenic | 55.0% |
| AGCAAGCTTTGCACCCTCTG+TGG | - | chr3_4:55552515-55552534 | None:intergenic | 55.0% | |
| CTTTCGTGAAGAGCCCACTG+CGG | + | chr3_4:55552537-55552556 | Msa0507900:CDS | 55.0% | |
| GCTTCGAGAAAGTCACCTGC+AGG | + | chr3_4:55552561-55552580 | Msa0507900:CDS | 55.0% | |
| !! | CTTTCTCGAAGCGCCGCAGT+GGG | - | chr3_4:55552553-55552572 | None:intergenic | 60.0% |
| !! | ACTTTCTCGAAGCGCCGCAG+TGG | - | chr3_4:55552554-55552573 | None:intergenic | 60.0% |
| !! | CTTTCTCGAAGCGCCGCAGT+GGG | - | chr3_4:55552553-55552572 | None:intergenic | 60.0% |
| !! | ACTTTCTCGAAGCGCCGCAG+TGG | - | chr3_4:55552554-55552573 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 55551907 | 55552838 | 55551907 | ID=Msa0507900;Name=Msa0507900 |
| chr3_4 | mRNA | 55551907 | 55552838 | 55551907 | ID=Msa0507900-mRNA-1;Parent=Msa0507900;Name=Msa0507900-mRNA-1;_AED=0.12;_eAED=0.24;_QI=0|0|0|1|0|0.25|4|0|219 |
| chr3_4 | exon | 55551907 | 55552000 | 55551907 | ID=Msa0507900-mRNA-1:exon:12355;Parent=Msa0507900-mRNA-1 |
| chr3_4 | exon | 55552005 | 55552144 | 55552005 | ID=Msa0507900-mRNA-1:exon:12356;Parent=Msa0507900-mRNA-1 |
| chr3_4 | exon | 55552231 | 55552300 | 55552231 | ID=Msa0507900-mRNA-1:exon:12357;Parent=Msa0507900-mRNA-1 |
| chr3_4 | exon | 55552483 | 55552838 | 55552483 | ID=Msa0507900-mRNA-1:exon:12358;Parent=Msa0507900-mRNA-1 |
| chr3_4 | CDS | 55551907 | 55552000 | 55551907 | ID=Msa0507900-mRNA-1:cds;Parent=Msa0507900-mRNA-1 |
| chr3_4 | CDS | 55552005 | 55552144 | 55552005 | ID=Msa0507900-mRNA-1:cds;Parent=Msa0507900-mRNA-1 |
| chr3_4 | CDS | 55552231 | 55552300 | 55552231 | ID=Msa0507900-mRNA-1:cds;Parent=Msa0507900-mRNA-1 |
| chr3_4 | CDS | 55552483 | 55552838 | 55552483 | ID=Msa0507900-mRNA-1:cds;Parent=Msa0507900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
