Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508670 | XP_003600854.2 | 92.593 | 216 | 16 | 0 | 30 | 245 | 1 | 216 | 1.09e-137 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508670 | sp|Q8S9H7|DIV_ANTMA | 36.842 | 133 | 68 | 3 | 77 | 200 | 76 | 201 | 3.96e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508670 | G7JAP1 | 92.593 | 216 | 16 | 0 | 30 | 245 | 1 | 216 | 5.20e-138 | 395 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0508670 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508670 | MtrunA17_Chr3g0113121 | 92.593 | 216 | 16 | 0 | 30 | 245 | 1 | 216 | 1.00e-141 | 395 |
| Msa0508670 | MtrunA17_Chr5g0436501 | 41.401 | 157 | 78 | 6 | 50 | 200 | 48 | 196 | 9.41e-21 | 88.2 |
| Msa0508670 | MtrunA17_Chr5g0429521 | 37.209 | 129 | 68 | 2 | 78 | 200 | 80 | 201 | 2.28e-17 | 79.7 |
| Msa0508670 | MtrunA17_Chr5g0440731 | 57.143 | 77 | 27 | 4 | 121 | 196 | 102 | 173 | 3.42e-17 | 79.0 |
| Msa0508670 | MtrunA17_Chr3g0104071 | 33.516 | 182 | 98 | 4 | 19 | 200 | 58 | 216 | 5.62e-17 | 78.6 |
| Msa0508670 | MtrunA17_Chr5g0409841 | 36.567 | 134 | 75 | 3 | 67 | 196 | 32 | 159 | 1.54e-16 | 76.3 |
| Msa0508670 | MtrunA17_Chr5g0440741 | 58.904 | 73 | 24 | 4 | 125 | 196 | 101 | 168 | 5.37e-16 | 75.5 |
| Msa0508670 | MtrunA17_Chr7g0241761 | 31.443 | 194 | 92 | 8 | 26 | 200 | 38 | 209 | 5.63e-16 | 75.9 |
| Msa0508670 | MtrunA17_Chr5g0409831 | 43.023 | 86 | 43 | 2 | 90 | 169 | 37 | 122 | 9.51e-16 | 73.9 |
| Msa0508670 | MtrunA17_Chr3g0135671 | 38.462 | 117 | 56 | 2 | 79 | 195 | 58 | 158 | 7.33e-15 | 71.6 |
| Msa0508670 | MtrunA17_Chr1g0210471 | 29.240 | 171 | 94 | 4 | 29 | 199 | 49 | 192 | 9.41e-14 | 68.6 |
| Msa0508670 | MtrunA17_Chr4g0059701 | 33.333 | 117 | 66 | 2 | 53 | 169 | 25 | 129 | 1.55e-13 | 68.6 |
| Msa0508670 | MtrunA17_Chr1g0162081 | 45.570 | 79 | 36 | 2 | 121 | 199 | 119 | 190 | 1.36e-12 | 65.9 |
| Msa0508670 | MtrunA17_Chr6g0488471 | 37.692 | 130 | 57 | 6 | 112 | 241 | 87 | 192 | 1.43e-12 | 65.9 |
| Msa0508670 | MtrunA17_Chr2g0331031 | 39.759 | 83 | 43 | 1 | 115 | 197 | 100 | 175 | 1.62e-12 | 66.2 |
| Msa0508670 | MtrunA17_Chr4g0055931 | 36.607 | 112 | 52 | 2 | 88 | 199 | 71 | 163 | 4.28e-12 | 64.7 |
| Msa0508670 | MtrunA17_Chr4g0062741 | 44.304 | 79 | 37 | 2 | 121 | 199 | 135 | 206 | 5.80e-12 | 64.3 |
| Msa0508670 | MtrunA17_Chr5g0415191 | 55.102 | 49 | 22 | 0 | 121 | 169 | 99 | 147 | 6.49e-12 | 64.3 |
| Msa0508670 | MtrunA17_Chr8g0365011 | 35.948 | 153 | 64 | 7 | 61 | 199 | 42 | 174 | 8.79e-12 | 63.5 |
| Msa0508670 | MtrunA17_Chr8g0389241 | 44.000 | 75 | 34 | 1 | 121 | 195 | 102 | 168 | 1.52e-11 | 62.8 |
| Msa0508670 | MtrunA17_Chr5g0432921 | 44.792 | 96 | 44 | 5 | 93 | 187 | 85 | 172 | 1.79e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508670 | AT5G05790.2 | 41.406 | 128 | 63 | 3 | 78 | 201 | 82 | 201 | 7.61e-20 | 86.3 |
| Msa0508670 | AT5G05790.1 | 41.406 | 128 | 63 | 3 | 78 | 201 | 82 | 201 | 7.61e-20 | 86.3 |
| Msa0508670 | AT3G11280.2 | 35.870 | 184 | 90 | 9 | 25 | 201 | 35 | 197 | 5.61e-19 | 83.6 |
| Msa0508670 | AT3G11280.1 | 35.870 | 184 | 90 | 9 | 25 | 201 | 35 | 197 | 5.61e-19 | 83.6 |
| Msa0508670 | AT5G01200.1 | 45.299 | 117 | 50 | 4 | 85 | 200 | 112 | 215 | 3.49e-18 | 81.6 |
| Msa0508670 | AT2G38090.1 | 37.069 | 116 | 63 | 2 | 88 | 200 | 102 | 210 | 2.55e-16 | 77.0 |
| Msa0508670 | AT5G58900.1 | 36.424 | 151 | 72 | 5 | 63 | 200 | 71 | 210 | 4.24e-16 | 76.3 |
| Msa0508670 | AT5G08520.1 | 36.207 | 174 | 84 | 9 | 41 | 198 | 23 | 185 | 1.46e-15 | 74.7 |
| Msa0508670 | AT4G09450.1 | 39.837 | 123 | 61 | 4 | 99 | 215 | 66 | 181 | 4.06e-14 | 69.3 |
| Msa0508670 | AT5G04760.1 | 49.367 | 79 | 33 | 2 | 121 | 199 | 96 | 167 | 1.88e-13 | 67.8 |
| Msa0508670 | AT1G19000.2 | 50.877 | 57 | 28 | 0 | 113 | 169 | 91 | 147 | 6.02e-13 | 67.4 |
| Msa0508670 | AT1G19000.1 | 50.877 | 57 | 28 | 0 | 113 | 169 | 91 | 147 | 6.02e-13 | 67.4 |
| Msa0508670 | AT5G47390.1 | 35.878 | 131 | 66 | 3 | 115 | 245 | 87 | 199 | 9.64e-13 | 67.4 |
| Msa0508670 | AT1G70000.1 | 41.096 | 73 | 41 | 1 | 99 | 169 | 71 | 143 | 1.70e-12 | 65.9 |
| Msa0508670 | AT1G70000.2 | 41.096 | 73 | 41 | 1 | 99 | 169 | 71 | 143 | 1.70e-12 | 65.9 |
| Msa0508670 | AT3G10580.1 | 46.835 | 79 | 33 | 1 | 121 | 199 | 92 | 161 | 3.68e-12 | 65.1 |
| Msa0508670 | AT3G10580.2 | 46.835 | 79 | 33 | 1 | 121 | 199 | 92 | 161 | 3.89e-12 | 64.7 |
| Msa0508670 | AT1G49010.1 | 45.570 | 79 | 36 | 2 | 121 | 199 | 131 | 202 | 4.85e-12 | 65.1 |
| Msa0508670 | AT5G56840.1 | 52.632 | 57 | 27 | 0 | 121 | 177 | 88 | 144 | 2.78e-11 | 62.0 |
| Msa0508670 | AT5G61620.1 | 45.570 | 79 | 36 | 1 | 121 | 199 | 105 | 176 | 5.10e-11 | 62.0 |
| Msa0508670 | AT1G74840.2 | 55.102 | 49 | 22 | 0 | 121 | 169 | 93 | 141 | 6.75e-11 | 60.8 |
| Msa0508670 | AT1G74840.1 | 55.102 | 49 | 22 | 0 | 121 | 169 | 93 | 141 | 7.58e-11 | 61.2 |
Find 35 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGATCTTGATCACATTCT+TGG | 0.190525 | 3_4:-56754963 | None:intergenic |
| TCAACCAATAATCATCTTCT+TGG | 0.216049 | 3_4:-56754296 | None:intergenic |
| ATTTCCAAGAAGATGATTAT+TGG | 0.238910 | 3_4:+56754292 | Msa0508670:CDS |
| GACTCATATGCGTGGTTATT+TGG | 0.243758 | 3_4:+56754880 | Msa0508670:CDS |
| ATAACTACTCTTGATCTTCT+TGG | 0.251399 | 3_4:+56754850 | Msa0508670:CDS |
| AAAGAAATCATTCAAGAAAA+TGG | 0.280931 | 3_4:+56754506 | Msa0508670:CDS |
| AGTTCTATTGTTATTATTAT+CGG | 0.281602 | 3_4:-56754463 | None:intergenic |
| TAGAATGGTAGAGAATATTC+TGG | 0.354560 | 3_4:+56754242 | Msa0508670:CDS |
| TTTGAGCATGGCTTGCTACT+TGG | 0.356659 | 3_4:-56754747 | None:intergenic |
| CATTCAAGAAAATGGTTCAT+TGG | 0.366973 | 3_4:+56754514 | Msa0508670:CDS |
| AAAATATCAAAAGGAAACTT+AGG | 0.373972 | 3_4:+56754812 | Msa0508670:CDS |
| TTGAGCATGGCTTGCTACTT+GGG | 0.417939 | 3_4:-56754746 | None:intergenic |
| TATTTGTAGGCGTTTCTTGA+AGG | 0.450413 | 3_4:+56754654 | Msa0508670:intron |
| TCAAACTCAAATAATAGTTA+TGG | 0.460594 | 3_4:+56754189 | Msa0508670:CDS |
| AAATATCAAAAGGAAACTTA+GGG | 0.461487 | 3_4:+56754813 | Msa0508670:CDS |
| AGATGATTATTGGTTGATGA+AGG | 0.467158 | 3_4:+56754302 | Msa0508670:CDS |
| AAAGTGGAAAGAAATCTCTA+AGG | 0.472931 | 3_4:+56754699 | Msa0508670:CDS |
| ATTTGTAGGCGTTTCTTGAA+GGG | 0.494586 | 3_4:+56754655 | Msa0508670:intron |
| GATCAAGAGTAGTTATATCA+TGG | 0.499404 | 3_4:-56754843 | None:intergenic |
| TACACGGCAAAGACGGAAAG+TGG | 0.504210 | 3_4:+56754683 | Msa0508670:CDS |
| GCATGGCTTGCTACTTGGGA+TGG | 0.505418 | 3_4:-56754742 | None:intergenic |
| TGTTGTCGTCTTCAATCACT+TGG | 0.511632 | 3_4:-56754906 | None:intergenic |
| CATCGAAGAAAGTAGTAGAA+TGG | 0.523965 | 3_4:+56754227 | Msa0508670:CDS |
| AGAATGGTAGAGAATATTCT+GGG | 0.545240 | 3_4:+56754243 | Msa0508670:CDS |
| CAATAGAACTACGAATATTG+TGG | 0.554412 | 3_4:+56754476 | Msa0508670:CDS |
| GGACTTCTACACGGCAAAGA+CGG | 0.559413 | 3_4:+56754676 | Msa0508670:CDS |
| ACTCAGCATTAACAATGGAA+TGG | 0.588865 | 3_4:+56754145 | None:intergenic |
| ATACATATGAACATATCAAG+TGG | 0.590413 | 3_4:-56754998 | None:intergenic |
| TTCTTGAAGGGACTTCTACA+CGG | 0.594579 | 3_4:+56754667 | Msa0508670:CDS |
| GAAGACGACAACAATAACAA+TGG | 0.605151 | 3_4:+56754916 | Msa0508670:CDS |
| TCAGCACAACATCGATGAAG+TGG | 0.609150 | 3_4:+56754356 | Msa0508670:CDS |
| TTATTATTATCGGTTGCATG+AGG | 0.632701 | 3_4:-56754453 | None:intergenic |
| GCACAACATCGATGAAGTGG+TGG | 0.668571 | 3_4:+56754359 | Msa0508670:CDS |
| AATATCAAAAGGAAACTTAG+GGG | 0.670754 | 3_4:+56754814 | Msa0508670:CDS |
| GAAGTGATGACTCATATGCG+TGG | 0.764866 | 3_4:+56754872 | Msa0508670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTCTATTGTTATTATTAT+CGG | - | chr3_4:56754466-56754485 | None:intergenic | 15.0% |
| !!! | AGTTCTATTGTTATTATTAT+CGG | - | chr3_4:56754466-56754485 | None:intergenic | 15.0% |
| !! | TCAAACTCAAATAATAGTTA+TGG | + | chr3_4:56754189-56754208 | Msa0508670:CDS | 20.0% |
| !!! | TTTCTTGAATGATTTCTTTT+TGG | - | chr3_4:56754505-56754524 | None:intergenic | 20.0% |
| !! | AAAGAAATCATTCAAGAAAA+TGG | + | chr3_4:56754506-56754525 | Msa0508670:CDS | 20.0% |
| !! | ATGATAGCAAAAATATCAAA+AGG | + | chr3_4:56754803-56754822 | Msa0508670:CDS | 20.0% |
| !! | AAAATATCAAAAGGAAACTT+AGG | + | chr3_4:56754812-56754831 | Msa0508670:CDS | 20.0% |
| !! | AAATATCAAAAGGAAACTTA+GGG | + | chr3_4:56754813-56754832 | Msa0508670:CDS | 20.0% |
| !! | TCAAACTCAAATAATAGTTA+TGG | + | chr3_4:56754189-56754208 | Msa0508670:CDS | 20.0% |
| !!! | TTTCTTGAATGATTTCTTTT+TGG | - | chr3_4:56754505-56754524 | None:intergenic | 20.0% |
| !! | AAAGAAATCATTCAAGAAAA+TGG | + | chr3_4:56754506-56754525 | Msa0508670:CDS | 20.0% |
| !! | ATGATAGCAAAAATATCAAA+AGG | + | chr3_4:56754803-56754822 | Msa0508670:CDS | 20.0% |
| !! | AAAATATCAAAAGGAAACTT+AGG | + | chr3_4:56754812-56754831 | Msa0508670:CDS | 20.0% |
| !! | AAATATCAAAAGGAAACTTA+GGG | + | chr3_4:56754813-56754832 | Msa0508670:CDS | 20.0% |
| ! | ATTTCCAAGAAGATGATTAT+TGG | + | chr3_4:56754292-56754311 | Msa0508670:CDS | 25.0% |
| ! | GAAACAATAAACGATGAAAA+AGG | - | chr3_4:56754563-56754582 | None:intergenic | 25.0% |
| !!! | GACATGGATTTTTTATTTGT+AGG | + | chr3_4:56754641-56754660 | Msa0508670:intron | 25.0% |
| ! | AATATCAAAAGGAAACTTAG+GGG | + | chr3_4:56754814-56754833 | Msa0508670:CDS | 25.0% |
| ! | ATTTCCAAGAAGATGATTAT+TGG | + | chr3_4:56754292-56754311 | Msa0508670:CDS | 25.0% |
| ! | GAAACAATAAACGATGAAAA+AGG | - | chr3_4:56754563-56754582 | None:intergenic | 25.0% |
| !!! | GACATGGATTTTTTATTTGT+AGG | + | chr3_4:56754641-56754660 | Msa0508670:intron | 25.0% |
| ! | AATATCAAAAGGAAACTTAG+GGG | + | chr3_4:56754814-56754833 | Msa0508670:CDS | 25.0% |
| TAGAATGGTAGAGAATATTC+TGG | + | chr3_4:56754242-56754261 | Msa0508670:CDS | 30.0% | |
| AGAATGGTAGAGAATATTCT+GGG | + | chr3_4:56754243-56754262 | Msa0508670:CDS | 30.0% | |
| TCAACCAATAATCATCTTCT+TGG | - | chr3_4:56754299-56754318 | None:intergenic | 30.0% | |
| !! | AGATGATTATTGGTTGATGA+AGG | + | chr3_4:56754302-56754321 | Msa0508670:CDS | 30.0% |
| ! | TTATTATTATCGGTTGCATG+AGG | - | chr3_4:56754456-56754475 | None:intergenic | 30.0% |
| CAATAGAACTACGAATATTG+TGG | + | chr3_4:56754476-56754495 | Msa0508670:CDS | 30.0% | |
| CATTCAAGAAAATGGTTCAT+TGG | + | chr3_4:56754514-56754533 | Msa0508670:CDS | 30.0% | |
| AAAGTGGAAAGAAATCTCTA+AGG | + | chr3_4:56754699-56754718 | Msa0508670:CDS | 30.0% | |
| !!! | TTTTTTCGTACTTTTGAGCA+TGG | - | chr3_4:56754762-56754781 | None:intergenic | 30.0% |
| ! | ATGCTCAAAAGTACGAAAAA+AGG | + | chr3_4:56754761-56754780 | Msa0508670:CDS | 30.0% |
| GATCAAGAGTAGTTATATCA+TGG | - | chr3_4:56754846-56754865 | None:intergenic | 30.0% | |
| ATAACTACTCTTGATCTTCT+TGG | + | chr3_4:56754850-56754869 | Msa0508670:CDS | 30.0% | |
| TAGAATGGTAGAGAATATTC+TGG | + | chr3_4:56754242-56754261 | Msa0508670:CDS | 30.0% | |
| AGAATGGTAGAGAATATTCT+GGG | + | chr3_4:56754243-56754262 | Msa0508670:CDS | 30.0% | |
| TCAACCAATAATCATCTTCT+TGG | - | chr3_4:56754299-56754318 | None:intergenic | 30.0% | |
| !! | AGATGATTATTGGTTGATGA+AGG | + | chr3_4:56754302-56754321 | Msa0508670:CDS | 30.0% |
| ! | TTATTATTATCGGTTGCATG+AGG | - | chr3_4:56754456-56754475 | None:intergenic | 30.0% |
| CAATAGAACTACGAATATTG+TGG | + | chr3_4:56754476-56754495 | Msa0508670:CDS | 30.0% | |
| CATTCAAGAAAATGGTTCAT+TGG | + | chr3_4:56754514-56754533 | Msa0508670:CDS | 30.0% | |
| AAAGTGGAAAGAAATCTCTA+AGG | + | chr3_4:56754699-56754718 | Msa0508670:CDS | 30.0% | |
| !!! | TTTTTTCGTACTTTTGAGCA+TGG | - | chr3_4:56754762-56754781 | None:intergenic | 30.0% |
| ! | ATGCTCAAAAGTACGAAAAA+AGG | + | chr3_4:56754761-56754780 | Msa0508670:CDS | 30.0% |
| GATCAAGAGTAGTTATATCA+TGG | - | chr3_4:56754846-56754865 | None:intergenic | 30.0% | |
| ATAACTACTCTTGATCTTCT+TGG | + | chr3_4:56754850-56754869 | Msa0508670:CDS | 30.0% | |
| CATCGAAGAAAGTAGTAGAA+TGG | + | chr3_4:56754227-56754246 | Msa0508670:CDS | 35.0% | |
| TATTTGTAGGCGTTTCTTGA+AGG | + | chr3_4:56754654-56754673 | Msa0508670:intron | 35.0% | |
| ATTTGTAGGCGTTTCTTGAA+GGG | + | chr3_4:56754655-56754674 | Msa0508670:intron | 35.0% | |
| GAAGACGACAACAATAACAA+TGG | + | chr3_4:56754916-56754935 | Msa0508670:CDS | 35.0% | |
| CATGATCTTGATCACATTCT+TGG | - | chr3_4:56754966-56754985 | None:intergenic | 35.0% | |
| CATCGAAGAAAGTAGTAGAA+TGG | + | chr3_4:56754227-56754246 | Msa0508670:CDS | 35.0% | |
| TATTTGTAGGCGTTTCTTGA+AGG | + | chr3_4:56754654-56754673 | Msa0508670:intron | 35.0% | |
| ATTTGTAGGCGTTTCTTGAA+GGG | + | chr3_4:56754655-56754674 | Msa0508670:intron | 35.0% | |
| GAAGACGACAACAATAACAA+TGG | + | chr3_4:56754916-56754935 | Msa0508670:CDS | 35.0% | |
| CATGATCTTGATCACATTCT+TGG | - | chr3_4:56754966-56754985 | None:intergenic | 35.0% | |
| TTCTTGAAGGGACTTCTACA+CGG | + | chr3_4:56754667-56754686 | Msa0508670:CDS | 40.0% | |
| GACTCATATGCGTGGTTATT+TGG | + | chr3_4:56754880-56754899 | Msa0508670:CDS | 40.0% | |
| TGTTGTCGTCTTCAATCACT+TGG | - | chr3_4:56754909-56754928 | None:intergenic | 40.0% | |
| TTCTTGAAGGGACTTCTACA+CGG | + | chr3_4:56754667-56754686 | Msa0508670:CDS | 40.0% | |
| GACTCATATGCGTGGTTATT+TGG | + | chr3_4:56754880-56754899 | Msa0508670:CDS | 40.0% | |
| TGTTGTCGTCTTCAATCACT+TGG | - | chr3_4:56754909-56754928 | None:intergenic | 40.0% | |
| TCAGCACAACATCGATGAAG+TGG | + | chr3_4:56754356-56754375 | Msa0508670:CDS | 45.0% | |
| !! | TCGACGAGCGTTTCACTTTT+TGG | + | chr3_4:56754399-56754418 | Msa0508670:CDS | 45.0% |
| !! | TTGAGCATGGCTTGCTACTT+GGG | - | chr3_4:56754749-56754768 | None:intergenic | 45.0% |
| !! | TTTGAGCATGGCTTGCTACT+TGG | - | chr3_4:56754750-56754769 | None:intergenic | 45.0% |
| GAAGTGATGACTCATATGCG+TGG | + | chr3_4:56754872-56754891 | Msa0508670:CDS | 45.0% | |
| TCAGCACAACATCGATGAAG+TGG | + | chr3_4:56754356-56754375 | Msa0508670:CDS | 45.0% | |
| !! | TCGACGAGCGTTTCACTTTT+TGG | + | chr3_4:56754399-56754418 | Msa0508670:CDS | 45.0% |
| !! | TTGAGCATGGCTTGCTACTT+GGG | - | chr3_4:56754749-56754768 | None:intergenic | 45.0% |
| !! | TTTGAGCATGGCTTGCTACT+TGG | - | chr3_4:56754750-56754769 | None:intergenic | 45.0% |
| GAAGTGATGACTCATATGCG+TGG | + | chr3_4:56754872-56754891 | Msa0508670:CDS | 45.0% | |
| GCACAACATCGATGAAGTGG+TGG | + | chr3_4:56754359-56754378 | Msa0508670:CDS | 50.0% | |
| GCGCACACATGTGTTTGACA+TGG | + | chr3_4:56754625-56754644 | Msa0508670:intron | 50.0% | |
| GGACTTCTACACGGCAAAGA+CGG | + | chr3_4:56754676-56754695 | Msa0508670:CDS | 50.0% | |
| TACACGGCAAAGACGGAAAG+TGG | + | chr3_4:56754683-56754702 | Msa0508670:CDS | 50.0% | |
| GCACAACATCGATGAAGTGG+TGG | + | chr3_4:56754359-56754378 | Msa0508670:CDS | 50.0% | |
| GCGCACACATGTGTTTGACA+TGG | + | chr3_4:56754625-56754644 | Msa0508670:intron | 50.0% | |
| GGACTTCTACACGGCAAAGA+CGG | + | chr3_4:56754676-56754695 | Msa0508670:CDS | 50.0% | |
| TACACGGCAAAGACGGAAAG+TGG | + | chr3_4:56754683-56754702 | Msa0508670:CDS | 50.0% | |
| !! | GCATGGCTTGCTACTTGGGA+TGG | - | chr3_4:56754745-56754764 | None:intergenic | 55.0% |
| !! | GCATGGCTTGCTACTTGGGA+TGG | - | chr3_4:56754745-56754764 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 56754159 | 56755005 | 56754159 | ID=Msa0508670;Name=Msa0508670 |
| chr3_4 | mRNA | 56754159 | 56755005 | 56754159 | ID=Msa0508670-mRNA-1;Parent=Msa0508670;Name=Msa0508670-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|245 |
| chr3_4 | exon | 56754159 | 56754553 | 56754159 | ID=Msa0508670-mRNA-1:exon:12804;Parent=Msa0508670-mRNA-1 |
| chr3_4 | exon | 56754663 | 56755005 | 56754663 | ID=Msa0508670-mRNA-1:exon:12805;Parent=Msa0508670-mRNA-1 |
| chr3_4 | CDS | 56754159 | 56754553 | 56754159 | ID=Msa0508670-mRNA-1:cds;Parent=Msa0508670-mRNA-1 |
| chr3_4 | CDS | 56754663 | 56755005 | 56754663 | ID=Msa0508670-mRNA-1:cds;Parent=Msa0508670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
