Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509460 | XP_003601024.1 | 84.249 | 273 | 26 | 2 | 1 | 256 | 1 | 273 | 8.40e-156 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509460 | sp|Q9LYL9|Y3623_ARATH | 42.909 | 275 | 127 | 4 | 1 | 247 | 1 | 273 | 3.11e-71 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509460 | G7J2Y2 | 84.249 | 273 | 26 | 2 | 1 | 256 | 1 | 273 | 4.01e-156 | 444 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0509460 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509460 | MtrunA17_Chr3g0114411 | 84.249 | 273 | 26 | 2 | 1 | 256 | 1 | 273 | 7.72e-160 | 444 |
| Msa0509460 | MtrunA17_Chr3g0125321 | 24.000 | 200 | 135 | 4 | 57 | 241 | 39 | 236 | 3.28e-13 | 67.4 |
| Msa0509460 | MtrunA17_Chr5g0447111 | 30.968 | 155 | 95 | 3 | 72 | 216 | 142 | 294 | 1.32e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509460 | AT3G56230.1 | 42.909 | 275 | 127 | 4 | 1 | 247 | 1 | 273 | 3.16e-72 | 223 |
| Msa0509460 | AT1G01640.1 | 42.487 | 193 | 93 | 5 | 72 | 251 | 1 | 188 | 1.58e-43 | 147 |
| Msa0509460 | AT1G01640.2 | 42.442 | 172 | 81 | 5 | 93 | 251 | 1 | 167 | 2.61e-36 | 127 |
| Msa0509460 | AT2G40450.1 | 34.595 | 185 | 104 | 4 | 75 | 242 | 4 | 188 | 1.11e-17 | 79.3 |
| Msa0509460 | AT2G05330.1 | 35.156 | 128 | 81 | 2 | 117 | 242 | 49 | 176 | 1.04e-15 | 74.3 |
| Msa0509460 | AT2G05330.2 | 35.156 | 128 | 81 | 2 | 117 | 242 | 5 | 132 | 1.32e-15 | 72.8 |
| Msa0509460 | AT4G04090.1 | 28.409 | 176 | 112 | 3 | 85 | 246 | 14 | 189 | 2.17e-15 | 72.8 |
| Msa0509460 | AT5G48510.1 | 31.111 | 180 | 108 | 4 | 84 | 247 | 13 | 192 | 1.32e-14 | 71.2 |
| Msa0509460 | AT4G08455.1 | 29.375 | 160 | 98 | 5 | 95 | 241 | 91 | 248 | 2.82e-13 | 68.2 |
Find 43 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGAGGTCTTAATATTAA+TGG | 0.173482 | 3_4:+57907832 | None:intergenic |
| TTATAGAGAAATTGATAATT+TGG | 0.186682 | 3_4:+57906568 | None:intergenic |
| TGCACAAAAGCTTCAAATTT+AGG | 0.202933 | 3_4:+57906644 | None:intergenic |
| ATTCTAGTTCTTCATGGTTT+AGG | 0.258680 | 3_4:+57906921 | None:intergenic |
| TAGTGTCTCAAATGCATTAG+AGG | 0.315759 | 3_4:+57906754 | None:intergenic |
| CTCGAATTTCGCCGCGAAAT+AGG | 0.318434 | 3_4:+57907703 | None:intergenic |
| AGGATGTCTCCTTCAAATCT+TGG | 0.335688 | 3_4:+57906708 | None:intergenic |
| GGAGAGATTCTAGTTCTTCA+TGG | 0.351873 | 3_4:+57906915 | None:intergenic |
| ACCTGCACATAAATCCGTTT+TGG | 0.358823 | 3_4:-57907412 | Msa0509460:intron |
| TTACAGTGGGACATTGCCTT+TGG | 0.363490 | 3_4:-57906882 | Msa0509460:CDS |
| GCCCCACATATTGTATTCCT+TGG | 0.412240 | 3_4:+57907814 | None:intergenic |
| AGTTCTTCATGGTTTAGGTC+AGG | 0.422615 | 3_4:+57906926 | None:intergenic |
| ACGGATTTATGTGCAGGTAT+AGG | 0.430061 | 3_4:+57907417 | None:intergenic |
| GGGCATGTTATGAAGGAGTT+AGG | 0.432141 | 3_4:-57907795 | Msa0509460:CDS |
| TGTGTGAATTTGTTCTTTGA+AGG | 0.437509 | 3_4:+57907473 | None:intergenic |
| GTTTCAAGAGCATTTGTGAA+TGG | 0.440008 | 3_4:-57906593 | Msa0509460:CDS |
| TTGTTCAAACCAAGATTTGA+AGG | 0.441270 | 3_4:-57906717 | Msa0509460:CDS |
| TCCTGGAGTTTCTTTACAGT+GGG | 0.444038 | 3_4:-57906895 | Msa0509460:CDS |
| CCACATATTGTATTCCTTGG+AGG | 0.461630 | 3_4:+57907817 | None:intergenic |
| AAAACAATCACTACTCCAAA+TGG | 0.473612 | 3_4:-57907730 | Msa0509460:CDS |
| ATAGGTGGACCATGATTGCC+TGG | 0.517957 | 3_4:+57907435 | None:intergenic |
| ATAGTTATTGTGTTACAAGT+TGG | 0.522203 | 3_4:+57906950 | None:intergenic |
| CTCCTGGAGTTTCTTTACAG+TGG | 0.523154 | 3_4:-57906896 | Msa0509460:CDS |
| CCTCCAAGGAATACAATATG+TGG | 0.523672 | 3_4:-57907817 | Msa0509460:CDS |
| ACCAAAACGGATTTATGTGC+AGG | 0.533046 | 3_4:+57907411 | None:intergenic |
| ATATGTGGGGCATGTTATGA+AGG | 0.533797 | 3_4:-57907802 | Msa0509460:CDS |
| TCACAGTATTTCAGCAAATG+TGG | 0.541324 | 3_4:+57906803 | None:intergenic |
| TTGATAAGTCCAGGCAATCA+TGG | 0.543484 | 3_4:-57907444 | Msa0509460:CDS |
| CGCGAAATAGGAGAACCATT+TGG | 0.543566 | 3_4:+57907715 | None:intergenic |
| CAAGATTTGGCTTATCTCAG+AGG | 0.546377 | 3_4:-57907507 | Msa0509460:CDS |
| CAAATGGTTCTCCTATTTCG+CGG | 0.549333 | 3_4:-57907714 | Msa0509460:CDS |
| TGAAGAACTAGAATCTCTCC+TGG | 0.552448 | 3_4:-57906912 | Msa0509460:CDS |
| AAAACAAGAACTCACCAAAA+CGG | 0.553720 | 3_4:+57907398 | None:intergenic |
| ACAGATATATTGATAAGTCC+AGG | 0.558976 | 3_4:-57907453 | Msa0509460:CDS |
| CTCCAAGGAATACAATATGT+GGG | 0.586870 | 3_4:-57907816 | Msa0509460:CDS |
| CTTATCAGCTGCTTGTGACA+AGG | 0.589102 | 3_4:+57906835 | None:intergenic |
| GATTTATGTGCAGGTATAGG+TGG | 0.598343 | 3_4:+57907420 | None:intergenic |
| TCCCACTGTAAAGAAACTCC+AGG | 0.600648 | 3_4:+57906894 | None:intergenic |
| ACTAATTGCACAGTTAAATG+TGG | 0.601341 | 3_4:+57906614 | None:intergenic |
| CACTTGATGATTGCATAAGA+TGG | 0.603274 | 3_4:-57907566 | Msa0509460:CDS |
| AGCATGATCAACATGATGAA+CGG | 0.624401 | 3_4:-57907772 | Msa0509460:intron |
| CATTAATATTAAGACCTCCA+AGG | 0.644737 | 3_4:-57907831 | Msa0509460:CDS |
| TCCAAGGAATACAATATGTG+GGG | 0.668052 | 3_4:-57907815 | Msa0509460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTAAAGATTAAAGAA+TGG | + | chr3_4:57907078-57907097 | None:intergenic | 10.0% |
| !!! | AGATAAAATAAAGTATTTTT+TGG | - | chr3_4:57907168-57907187 | Msa0509460:intron | 10.0% |
| !!! | ATTTTTAACTAAGAAATTAA+AGG | + | chr3_4:57907742-57907761 | None:intergenic | 10.0% |
| !!! | AAATTTTAAAGATTAAAGAA+TGG | + | chr3_4:57907078-57907097 | None:intergenic | 10.0% |
| !!! | AGATAAAATAAAGTATTTTT+TGG | - | chr3_4:57907168-57907187 | Msa0509460:intron | 10.0% |
| !!! | ATTTTTAACTAAGAAATTAA+AGG | + | chr3_4:57907742-57907761 | None:intergenic | 10.0% |
| !! | GTTAATGAAAATTATTTAGT+GGG | + | chr3_4:57907056-57907075 | None:intergenic | 15.0% |
| !!! | TAAAATAAAGTATTTTTTGG+CGG | - | chr3_4:57907171-57907190 | Msa0509460:intron | 15.0% |
| !! | AAAATCTTAAAAAAATAAGC+TGG | - | chr3_4:57907288-57907307 | Msa0509460:intron | 15.0% |
| !!! | TTATAGAGAAATTGATAATT+TGG | + | chr3_4:57907862-57907881 | None:intergenic | 15.0% |
| !! | GTTAATGAAAATTATTTAGT+GGG | + | chr3_4:57907056-57907075 | None:intergenic | 15.0% |
| !!! | TAAAATAAAGTATTTTTTGG+CGG | - | chr3_4:57907171-57907190 | Msa0509460:intron | 15.0% |
| !! | AAAATCTTAAAAAAATAAGC+TGG | - | chr3_4:57907288-57907307 | Msa0509460:intron | 15.0% |
| !!! | TTATAGAGAAATTGATAATT+TGG | + | chr3_4:57907862-57907881 | None:intergenic | 15.0% |
| !!! | TTCTTTTCATAATTCTTCTA+TGG | - | chr3_4:57906762-57906781 | Msa0509460:CDS | 20.0% |
| !!! | CTTGTTTTTGTTGATTAAAT+TGG | + | chr3_4:57906904-57906923 | None:intergenic | 20.0% |
| !! | TAATCAACAAAAACAAGATT+TGG | - | chr3_4:57906907-57906926 | Msa0509460:CDS | 20.0% |
| !! | GGTTAATGAAAATTATTTAG+TGG | + | chr3_4:57907057-57907076 | None:intergenic | 20.0% |
| !! | TACTTATGTTATTGTAATGT+AGG | - | chr3_4:57907398-57907417 | Msa0509460:intron | 20.0% |
| !! | AGTTAAAAATATTGAGCATA+TGG | - | chr3_4:57907752-57907771 | Msa0509460:intron | 20.0% |
| !!! | TTCTTTTCATAATTCTTCTA+TGG | - | chr3_4:57906762-57906781 | Msa0509460:CDS | 20.0% |
| !!! | CTTGTTTTTGTTGATTAAAT+TGG | + | chr3_4:57906904-57906923 | None:intergenic | 20.0% |
| !! | TAATCAACAAAAACAAGATT+TGG | - | chr3_4:57906907-57906926 | Msa0509460:CDS | 20.0% |
| !! | GGTTAATGAAAATTATTTAG+TGG | + | chr3_4:57907057-57907076 | None:intergenic | 20.0% |
| !! | TACTTATGTTATTGTAATGT+AGG | - | chr3_4:57907398-57907417 | Msa0509460:intron | 20.0% |
| !! | AGTTAAAAATATTGAGCATA+TGG | - | chr3_4:57907752-57907771 | Msa0509460:intron | 20.0% |
| ! | TCAAGTGTATAATCTAAAAG+AGG | - | chr3_4:57906808-57906827 | Msa0509460:CDS | 25.0% |
| ! | ATAGTTATTGTGTTACAAGT+TGG | + | chr3_4:57907480-57907499 | None:intergenic | 25.0% |
| !! | TGTTTTTCCAATTTTTCCAA+AGG | + | chr3_4:57907564-57907583 | None:intergenic | 25.0% |
| ! | TCAAGTGTATAATCTAAAAG+AGG | - | chr3_4:57906808-57906827 | Msa0509460:CDS | 25.0% |
| ! | ATAGTTATTGTGTTACAAGT+TGG | + | chr3_4:57907480-57907499 | None:intergenic | 25.0% |
| !! | TGTTTTTCCAATTTTTCCAA+AGG | + | chr3_4:57907564-57907583 | None:intergenic | 25.0% |
| CTTGGAGGTCTTAATATTAA+TGG | + | chr3_4:57906598-57906617 | None:intergenic | 30.0% | |
| CATTAATATTAAGACCTCCA+AGG | - | chr3_4:57906596-57906615 | Msa0509460:CDS | 30.0% | |
| AAAACAATCACTACTCCAAA+TGG | - | chr3_4:57906697-57906716 | Msa0509460:CDS | 30.0% | |
| ! | TGTGTGAATTTGTTCTTTGA+AGG | + | chr3_4:57906957-57906976 | None:intergenic | 30.0% |
| ACAGATATATTGATAAGTCC+AGG | - | chr3_4:57906974-57906993 | Msa0509460:CDS | 30.0% | |
| AAAACAAGAACTCACCAAAA+CGG | + | chr3_4:57907032-57907051 | None:intergenic | 30.0% | |
| !! | ATTCTAGTTCTTCATGGTTT+AGG | + | chr3_4:57907509-57907528 | None:intergenic | 30.0% |
| TTGTTCAAACCAAGATTTGA+AGG | - | chr3_4:57907710-57907729 | Msa0509460:CDS | 30.0% | |
| TGCACAAAAGCTTCAAATTT+AGG | + | chr3_4:57907786-57907805 | None:intergenic | 30.0% | |
| !! | AATTTGAAGCTTTTGTGCAT+AGG | - | chr3_4:57907787-57907806 | Msa0509460:CDS | 30.0% |
| ACTAATTGCACAGTTAAATG+TGG | + | chr3_4:57907816-57907835 | None:intergenic | 30.0% | |
| CTTGGAGGTCTTAATATTAA+TGG | + | chr3_4:57906598-57906617 | None:intergenic | 30.0% | |
| CATTAATATTAAGACCTCCA+AGG | - | chr3_4:57906596-57906615 | Msa0509460:CDS | 30.0% | |
| AAAACAATCACTACTCCAAA+TGG | - | chr3_4:57906697-57906716 | Msa0509460:CDS | 30.0% | |
| ! | TGTGTGAATTTGTTCTTTGA+AGG | + | chr3_4:57906957-57906976 | None:intergenic | 30.0% |
| ACAGATATATTGATAAGTCC+AGG | - | chr3_4:57906974-57906993 | Msa0509460:CDS | 30.0% | |
| AAAACAAGAACTCACCAAAA+CGG | + | chr3_4:57907032-57907051 | None:intergenic | 30.0% | |
| !! | ATTCTAGTTCTTCATGGTTT+AGG | + | chr3_4:57907509-57907528 | None:intergenic | 30.0% |
| TTGTTCAAACCAAGATTTGA+AGG | - | chr3_4:57907710-57907729 | Msa0509460:CDS | 30.0% | |
| TGCACAAAAGCTTCAAATTT+AGG | + | chr3_4:57907786-57907805 | None:intergenic | 30.0% | |
| !! | AATTTGAAGCTTTTGTGCAT+AGG | - | chr3_4:57907787-57907806 | Msa0509460:CDS | 30.0% |
| ACTAATTGCACAGTTAAATG+TGG | + | chr3_4:57907816-57907835 | None:intergenic | 30.0% | |
| CTCCAAGGAATACAATATGT+GGG | - | chr3_4:57906611-57906630 | Msa0509460:CDS | 35.0% | |
| TCCAAGGAATACAATATGTG+GGG | - | chr3_4:57906612-57906631 | Msa0509460:CDS | 35.0% | |
| AGCATGATCAACATGATGAA+CGG | - | chr3_4:57906655-57906674 | Msa0509460:CDS | 35.0% | |
| ! | CACTTGATGATTGCATAAGA+TGG | - | chr3_4:57906861-57906880 | Msa0509460:CDS | 35.0% |
| TTCTGTCTCATGATTGATCT+CGG | - | chr3_4:57907195-57907214 | Msa0509460:intron | 35.0% | |
| ! | GACATTGCCTTTGGAAAAAT+TGG | - | chr3_4:57907554-57907573 | Msa0509460:CDS | 35.0% |
| TCACAGTATTTCAGCAAATG+TGG | + | chr3_4:57907627-57907646 | None:intergenic | 35.0% | |
| TAGTGTCTCAAATGCATTAG+AGG | + | chr3_4:57907676-57907695 | None:intergenic | 35.0% | |
| !! | GTTTCAAGAGCATTTGTGAA+TGG | - | chr3_4:57907834-57907853 | Msa0509460:CDS | 35.0% |
| CTCCAAGGAATACAATATGT+GGG | - | chr3_4:57906611-57906630 | Msa0509460:CDS | 35.0% | |
| TCCAAGGAATACAATATGTG+GGG | - | chr3_4:57906612-57906631 | Msa0509460:CDS | 35.0% | |
| AGCATGATCAACATGATGAA+CGG | - | chr3_4:57906655-57906674 | Msa0509460:CDS | 35.0% | |
| ! | CACTTGATGATTGCATAAGA+TGG | - | chr3_4:57906861-57906880 | Msa0509460:CDS | 35.0% |
| TTCTGTCTCATGATTGATCT+CGG | - | chr3_4:57907195-57907214 | Msa0509460:intron | 35.0% | |
| ! | GACATTGCCTTTGGAAAAAT+TGG | - | chr3_4:57907554-57907573 | Msa0509460:CDS | 35.0% |
| TCACAGTATTTCAGCAAATG+TGG | + | chr3_4:57907627-57907646 | None:intergenic | 35.0% | |
| TAGTGTCTCAAATGCATTAG+AGG | + | chr3_4:57907676-57907695 | None:intergenic | 35.0% | |
| !! | GTTTCAAGAGCATTTGTGAA+TGG | - | chr3_4:57907834-57907853 | Msa0509460:CDS | 35.0% |
| CCACATATTGTATTCCTTGG+AGG | + | chr3_4:57906613-57906632 | None:intergenic | 40.0% | |
| CCTCCAAGGAATACAATATG+TGG | - | chr3_4:57906610-57906629 | Msa0509460:CDS | 40.0% | |
| ATATGTGGGGCATGTTATGA+AGG | - | chr3_4:57906625-57906644 | Msa0509460:CDS | 40.0% | |
| CAAATGGTTCTCCTATTTCG+CGG | - | chr3_4:57906713-57906732 | Msa0509460:CDS | 40.0% | |
| ! | CAAGATTTGGCTTATCTCAG+AGG | - | chr3_4:57906920-57906939 | Msa0509460:CDS | 40.0% |
| TTGATAAGTCCAGGCAATCA+TGG | - | chr3_4:57906983-57907002 | Msa0509460:intron | 40.0% | |
| GATTTATGTGCAGGTATAGG+TGG | + | chr3_4:57907010-57907029 | None:intergenic | 40.0% | |
| ACGGATTTATGTGCAGGTAT+AGG | + | chr3_4:57907013-57907032 | None:intergenic | 40.0% | |
| ! | ACCTGCACATAAATCCGTTT+TGG | - | chr3_4:57907015-57907034 | Msa0509460:intron | 40.0% |
| ! | ACCAAAACGGATTTATGTGC+AGG | + | chr3_4:57907019-57907038 | None:intergenic | 40.0% |
| AGTTCTTCATGGTTTAGGTC+AGG | + | chr3_4:57907504-57907523 | None:intergenic | 40.0% | |
| !! | GGAGAGATTCTAGTTCTTCA+TGG | + | chr3_4:57907515-57907534 | None:intergenic | 40.0% |
| TGAAGAACTAGAATCTCTCC+TGG | - | chr3_4:57907515-57907534 | Msa0509460:CDS | 40.0% | |
| TCCTGGAGTTTCTTTACAGT+GGG | - | chr3_4:57907532-57907551 | Msa0509460:CDS | 40.0% | |
| AGGATGTCTCCTTCAAATCT+TGG | + | chr3_4:57907722-57907741 | None:intergenic | 40.0% | |
| CCACATATTGTATTCCTTGG+AGG | + | chr3_4:57906613-57906632 | None:intergenic | 40.0% | |
| CCTCCAAGGAATACAATATG+TGG | - | chr3_4:57906610-57906629 | Msa0509460:CDS | 40.0% | |
| ATATGTGGGGCATGTTATGA+AGG | - | chr3_4:57906625-57906644 | Msa0509460:CDS | 40.0% | |
| CAAATGGTTCTCCTATTTCG+CGG | - | chr3_4:57906713-57906732 | Msa0509460:CDS | 40.0% | |
| ! | CAAGATTTGGCTTATCTCAG+AGG | - | chr3_4:57906920-57906939 | Msa0509460:CDS | 40.0% |
| TTGATAAGTCCAGGCAATCA+TGG | - | chr3_4:57906983-57907002 | Msa0509460:intron | 40.0% | |
| GATTTATGTGCAGGTATAGG+TGG | + | chr3_4:57907010-57907029 | None:intergenic | 40.0% | |
| ACGGATTTATGTGCAGGTAT+AGG | + | chr3_4:57907013-57907032 | None:intergenic | 40.0% | |
| ! | ACCTGCACATAAATCCGTTT+TGG | - | chr3_4:57907015-57907034 | Msa0509460:intron | 40.0% |
| ! | ACCAAAACGGATTTATGTGC+AGG | + | chr3_4:57907019-57907038 | None:intergenic | 40.0% |
| AGTTCTTCATGGTTTAGGTC+AGG | + | chr3_4:57907504-57907523 | None:intergenic | 40.0% | |
| !! | GGAGAGATTCTAGTTCTTCA+TGG | + | chr3_4:57907515-57907534 | None:intergenic | 40.0% |
| TGAAGAACTAGAATCTCTCC+TGG | - | chr3_4:57907515-57907534 | Msa0509460:CDS | 40.0% | |
| TCCTGGAGTTTCTTTACAGT+GGG | - | chr3_4:57907532-57907551 | Msa0509460:CDS | 40.0% | |
| AGGATGTCTCCTTCAAATCT+TGG | + | chr3_4:57907722-57907741 | None:intergenic | 40.0% | |
| GCCCCACATATTGTATTCCT+TGG | + | chr3_4:57906616-57906635 | None:intergenic | 45.0% | |
| GGGCATGTTATGAAGGAGTT+AGG | - | chr3_4:57906632-57906651 | Msa0509460:CDS | 45.0% | |
| CGCGAAATAGGAGAACCATT+TGG | + | chr3_4:57906715-57906734 | None:intergenic | 45.0% | |
| CAATCATCAAGTGTCTGCAG+TGG | + | chr3_4:57906854-57906873 | None:intergenic | 45.0% | |
| CTCCTGGAGTTTCTTTACAG+TGG | - | chr3_4:57907531-57907550 | Msa0509460:CDS | 45.0% | |
| TCCCACTGTAAAGAAACTCC+AGG | + | chr3_4:57907536-57907555 | None:intergenic | 45.0% | |
| TTACAGTGGGACATTGCCTT+TGG | - | chr3_4:57907545-57907564 | Msa0509460:CDS | 45.0% | |
| CTTATCAGCTGCTTGTGACA+AGG | + | chr3_4:57907595-57907614 | None:intergenic | 45.0% | |
| GCCCCACATATTGTATTCCT+TGG | + | chr3_4:57906616-57906635 | None:intergenic | 45.0% | |
| GGGCATGTTATGAAGGAGTT+AGG | - | chr3_4:57906632-57906651 | Msa0509460:CDS | 45.0% | |
| CGCGAAATAGGAGAACCATT+TGG | + | chr3_4:57906715-57906734 | None:intergenic | 45.0% | |
| CAATCATCAAGTGTCTGCAG+TGG | + | chr3_4:57906854-57906873 | None:intergenic | 45.0% | |
| CTCCTGGAGTTTCTTTACAG+TGG | - | chr3_4:57907531-57907550 | Msa0509460:CDS | 45.0% | |
| TCCCACTGTAAAGAAACTCC+AGG | + | chr3_4:57907536-57907555 | None:intergenic | 45.0% | |
| TTACAGTGGGACATTGCCTT+TGG | - | chr3_4:57907545-57907564 | Msa0509460:CDS | 45.0% | |
| CTTATCAGCTGCTTGTGACA+AGG | + | chr3_4:57907595-57907614 | None:intergenic | 45.0% | |
| CTCGAATTTCGCCGCGAAAT+AGG | + | chr3_4:57906727-57906746 | None:intergenic | 50.0% | |
| TTCGCGGCGAAATTCGAGTA+AGG | - | chr3_4:57906729-57906748 | Msa0509460:CDS | 50.0% | |
| ATAGGTGGACCATGATTGCC+TGG | + | chr3_4:57906995-57907014 | None:intergenic | 50.0% | |
| CTCGAATTTCGCCGCGAAAT+AGG | + | chr3_4:57906727-57906746 | None:intergenic | 50.0% | |
| TTCGCGGCGAAATTCGAGTA+AGG | - | chr3_4:57906729-57906748 | Msa0509460:CDS | 50.0% | |
| ATAGGTGGACCATGATTGCC+TGG | + | chr3_4:57906995-57907014 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 57906568 | 57907881 | 57906568 | ID=Msa0509460;Name=Msa0509460 |
| chr3_4 | mRNA | 57906568 | 57907881 | 57906568 | ID=Msa0509460-mRNA-1;Parent=Msa0509460;Name=Msa0509460-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|0|0.25|4|0|256 |
| chr3_4 | exon | 57907773 | 57907881 | 57907773 | ID=Msa0509460-mRNA-1:exon:13323;Parent=Msa0509460-mRNA-1 |
| chr3_4 | exon | 57907704 | 57907762 | 57907704 | ID=Msa0509460-mRNA-1:exon:13322;Parent=Msa0509460-mRNA-1 |
| chr3_4 | exon | 57907413 | 57907589 | 57907413 | ID=Msa0509460-mRNA-1:exon:13321;Parent=Msa0509460-mRNA-1 |
| chr3_4 | exon | 57906568 | 57906993 | 57906568 | ID=Msa0509460-mRNA-1:exon:13320;Parent=Msa0509460-mRNA-1 |
| chr3_4 | CDS | 57907773 | 57907881 | 57907773 | ID=Msa0509460-mRNA-1:cds;Parent=Msa0509460-mRNA-1 |
| chr3_4 | CDS | 57907704 | 57907762 | 57907704 | ID=Msa0509460-mRNA-1:cds;Parent=Msa0509460-mRNA-1 |
| chr3_4 | CDS | 57907413 | 57907589 | 57907413 | ID=Msa0509460-mRNA-1:cds;Parent=Msa0509460-mRNA-1 |
| chr3_4 | CDS | 57906568 | 57906993 | 57906568 | ID=Msa0509460-mRNA-1:cds;Parent=Msa0509460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
