Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510310 | XP_024635817.1 | 58.743 | 366 | 86 | 9 | 39 | 359 | 30 | 375 | 6.59e-99 | 316 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510310 | sp|Q6K5K2|Y2982_ORYSJ | 40.196 | 102 | 52 | 2 | 72 | 166 | 392 | 491 | 3.01e-13 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510310 | A0A072V0U1 | 77.778 | 234 | 36 | 6 | 39 | 268 | 30 | 251 | 2.51e-94 | 293 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0510310 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510310 | MtrunA17_Chr3g0116411 | 66.909 | 275 | 38 | 6 | 39 | 270 | 30 | 294 | 6.75e-93 | 283 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 85 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATATTGCCGTGATATT+TGG | 0.152887 | 3_4:+59318848 | Msa0510310:CDS |
| GAAACAAGTTCTACGCTATT+TGG | 0.188654 | 3_4:-59319982 | None:intergenic |
| TTCAGCAAACAGGTCCTTAT+TGG | 0.223966 | 3_4:-59320553 | None:intergenic |
| TTCAGCAAACAGGTCCTTAT+TGG | 0.223966 | 3_4:-59320767 | None:intergenic |
| TTCAGCAAACAGGTCCTTAT+TGG | 0.223966 | 3_4:-59320981 | None:intergenic |
| GCATGTGAACTTGAAACTTC+TGG | 0.292503 | 3_4:+59320501 | Msa0510310:CDS |
| GCATGTGAACTTGAAACTTC+TGG | 0.292503 | 3_4:+59320715 | Msa0510310:CDS |
| GCATGTGAACTTGAAACTTC+TGG | 0.292503 | 3_4:+59320929 | Msa0510310:CDS |
| AAGATGGTAATGTAGATAGA+AGG | 0.318676 | 3_4:+59320007 | Msa0510310:CDS |
| TTGCATCGAAACGCGGGAAT+TGG | 0.321866 | 3_4:-59318829 | None:intergenic |
| TCGGCTCACAAGCTTGAAAA+AGG | 0.326977 | 3_4:+59319784 | Msa0510310:CDS |
| AGAATCCATTATGTCCAATA+AGG | 0.374966 | 3_4:+59320539 | Msa0510310:CDS |
| AGAATCCATTATGTCCAATA+AGG | 0.374966 | 3_4:+59320753 | Msa0510310:CDS |
| AGAATCCATTATGTCCAATA+AGG | 0.374966 | 3_4:+59320967 | Msa0510310:CDS |
| AGCCAAGTCACCGAGAGTTT+TGG | 0.375722 | 3_4:+59320204 | Msa0510310:CDS |
| ACTTGATGTGCCAATGCATA+TGG | 0.375752 | 3_4:+59319939 | Msa0510310:CDS |
| TGTTACAGCCCATCTCTTAC+CGG | 0.383658 | 3_4:-59319707 | None:intergenic |
| CAGGTCCTTATTGGACATAA+TGG | 0.407699 | 3_4:-59320544 | None:intergenic |
| CAGGTCCTTATTGGACATAA+TGG | 0.407699 | 3_4:-59320758 | None:intergenic |
| CAGGTCCTTATTGGACATAA+TGG | 0.407699 | 3_4:-59320972 | None:intergenic |
| TTTGAAGAAGTGTTGGGCTC+AGG | 0.414789 | 3_4:+59320120 | Msa0510310:CDS |
| AGCCCATCTCTTACCGGTTG+AGG | 0.418637 | 3_4:-59319701 | None:intergenic |
| CTCATACGCTTCTAAATCGT+TGG | 0.425403 | 3_4:+59320149 | Msa0510310:CDS |
| CTCGAGGATTCAACCTCAAC+CGG | 0.431548 | 3_4:+59319688 | Msa0510310:CDS |
| CAACGATTTAGAAGCGTATG+AGG | 0.431571 | 3_4:-59320148 | None:intergenic |
| AAATCCTACCATGTCATTGT+TGG | 0.435100 | 3_4:+59319648 | Msa0510310:CDS |
| GTAGAACTTGTTTCAGAAGA+TGG | 0.439449 | 3_4:+59319991 | Msa0510310:CDS |
| TACCTAAGCCTTCAGCAAAC+AGG | 0.461021 | 3_4:-59320563 | None:intergenic |
| TACCTAAGCCTTCAGCAAAC+AGG | 0.461021 | 3_4:-59320777 | None:intergenic |
| TACCTAAGCCTTCAGCAAAC+AGG | 0.461021 | 3_4:-59320991 | None:intergenic |
| TTCTCTCTCAGTGCTCTGAA+TGG | 0.466164 | 3_4:-59318970 | None:intergenic |
| ACTTCAACTTTCTCCAACCT+AGG | 0.470273 | 3_4:+59318929 | Msa0510310:CDS |
| CTTGATGTGCCAATGCATAT+GGG | 0.492897 | 3_4:+59319940 | Msa0510310:CDS |
| TACCAAAACTCTCGGTGACT+TGG | 0.498675 | 3_4:-59320206 | None:intergenic |
| TTGTTGAAGCGGTGGGAGGC+AGG | 0.504223 | 3_4:-59318904 | None:intergenic |
| ATGATAAGTCTATGTGTGAA+AGG | 0.505569 | 3_4:+59319860 | Msa0510310:CDS |
| AGATGGTAATGTAGATAGAA+GGG | 0.509570 | 3_4:+59320008 | Msa0510310:CDS |
| TGAAAAGGAAAACCCTAGGT+TGG | 0.525045 | 3_4:-59318942 | None:intergenic |
| CAACCTCAACCGGTAAGAGA+TGG | 0.526023 | 3_4:+59319698 | Msa0510310:CDS |
| TTGAAGAAGTGTTGGGCTCA+GGG | 0.526257 | 3_4:+59320121 | Msa0510310:CDS |
| CTCTGAATGGAAGAATGAAA+AGG | 0.527533 | 3_4:-59318957 | None:intergenic |
| TCCTATGTTTGAAGAAGTGT+TGG | 0.533675 | 3_4:+59320113 | Msa0510310:CDS |
| CTTCAACTTTCTCCAACCTA+GGG | 0.533856 | 3_4:+59318930 | Msa0510310:CDS |
| GACCTGTTTGCTGAAGGCTT+AGG | 0.536114 | 3_4:+59320561 | Msa0510310:CDS |
| GACCTGTTTGCTGAAGGCTT+AGG | 0.536114 | 3_4:+59320775 | Msa0510310:CDS |
| GACCTGTTTGCTGAAGGCTT+AGG | 0.536114 | 3_4:+59320989 | Msa0510310:CDS |
| GATCAAGCAGCGAAATTCAA+AGG | 0.540326 | 3_4:+59320462 | Msa0510310:CDS |
| GCAATATTTGCATCGAAACG+CGG | 0.542981 | 3_4:-59318836 | None:intergenic |
| CAATATTTGCATCGAAACGC+GGG | 0.547308 | 3_4:-59318835 | None:intergenic |
| ATGGTAGGATTTAACTTAGG+AGG | 0.553387 | 3_4:-59319637 | None:intergenic |
| GATCAAGCAGCGATATTCAA+AGG | 0.555526 | 3_4:+59320676 | Msa0510310:CDS |
| GATCAAGCAGCGATATTCAA+AGG | 0.555526 | 3_4:+59320890 | Msa0510310:CDS |
| AATAAGGACCTGTTTGCTGA+AGG | 0.555855 | 3_4:+59320555 | Msa0510310:CDS |
| AATAAGGACCTGTTTGCTGA+AGG | 0.555855 | 3_4:+59320769 | Msa0510310:CDS |
| AATAAGGACCTGTTTGCTGA+AGG | 0.555855 | 3_4:+59320983 | Msa0510310:CDS |
| CCGTGATATTTGGAAGACAC+TGG | 0.556241 | 3_4:+59318858 | Msa0510310:CDS |
| AACCTCAACCGGTAAGAGAT+GGG | 0.557870 | 3_4:+59319699 | Msa0510310:CDS |
| ATGCATCATTTAGATCTACA+TGG | 0.559779 | 3_4:-59320074 | None:intergenic |
| CCTACCATGTCATTGTTGGT+TGG | 0.564330 | 3_4:+59319652 | Msa0510310:CDS |
| GTAACAGTATCAAAAGTTGA+TGG | 0.568143 | 3_4:+59319724 | Msa0510310:CDS |
| AAGAGAAGTAGATGCAGCAG+TGG | 0.569759 | 3_4:+59319913 | Msa0510310:CDS |
| AATTATGGTACCAAAACTCT+CGG | 0.575030 | 3_4:-59320214 | None:intergenic |
| ACTTCTGGAAGAAGCAAAGA+GGG | 0.576572 | 3_4:+59320516 | Msa0510310:CDS |
| ACTTCTGGAAGAAGCAAAGA+GGG | 0.576572 | 3_4:+59320730 | Msa0510310:CDS |
| ACTTCTGGAAGAAGCAAAGA+GGG | 0.576572 | 3_4:+59320944 | Msa0510310:CDS |
| AGTTGAAGTGTTTGTTGAAG+CGG | 0.591745 | 3_4:-59318915 | None:intergenic |
| GACATGGTAGGATTTAACTT+AGG | 0.591746 | 3_4:-59319640 | None:intergenic |
| CCCAACACTTCTTCAAACAT+AGG | 0.592689 | 3_4:-59320114 | None:intergenic |
| TTGATGTGCCAATGCATATG+GGG | 0.595030 | 3_4:+59319941 | Msa0510310:CDS |
| CCAACCAACAATGACATGGT+AGG | 0.598154 | 3_4:-59319652 | None:intergenic |
| TGAAGTGTTTGTTGAAGCGG+TGG | 0.598358 | 3_4:-59318912 | None:intergenic |
| CCTATGTTTGAAGAAGTGTT+GGG | 0.601870 | 3_4:+59320114 | Msa0510310:CDS |
| TGATAAGTCTATGTGTGAAA+GGG | 0.602703 | 3_4:+59319861 | Msa0510310:CDS |
| CTTACCAACCAACAATGACA+TGG | 0.609549 | 3_4:-59319656 | None:intergenic |
| AGAGAAGAAGAACAGTGCAA+TGG | 0.611095 | 3_4:+59318987 | Msa0510310:CDS |
| AGAATGAAAAGGAAAACCCT+AGG | 0.617509 | 3_4:-59318946 | None:intergenic |
| CCAGTGTCTTCCAAATATCA+CGG | 0.631739 | 3_4:-59318858 | None:intergenic |
| AACTTCTGGAAGAAGCAAAG+AGG | 0.635663 | 3_4:+59320515 | Msa0510310:CDS |
| AACTTCTGGAAGAAGCAAAG+AGG | 0.635663 | 3_4:+59320729 | Msa0510310:CDS |
| AACTTCTGGAAGAAGCAAAG+AGG | 0.635663 | 3_4:+59320943 | Msa0510310:CDS |
| TGAAGAAGTGTTGGGCTCAG+GGG | 0.642137 | 3_4:+59320122 | Msa0510310:CDS |
| TGGTAAGAAAATCTATCTCG+AGG | 0.647585 | 3_4:+59319672 | Msa0510310:CDS |
| GTGTTTGTTGAAGCGGTGGG+AGG | 0.664310 | 3_4:-59318908 | None:intergenic |
| GAAGTGTTTGTTGAAGCGGT+GGG | 0.681484 | 3_4:-59318911 | None:intergenic |
| TGATGTGCCAATGCATATGG+GGG | 0.729130 | 3_4:+59319942 | Msa0510310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTATTTACATTTCAT+TGG | + | chr3_4:59320371-59320390 | Msa0510310:intron | 10.0% |
| !!! | TTTTATTATTTACATTTCAT+TGG | + | chr3_4:59320371-59320390 | Msa0510310:intron | 10.0% |
| !!! | TTTTATTATTTACATTTCAT+TGG | + | chr3_4:59320371-59320390 | Msa0510310:intron | 10.0% |
| !!! | TTTTATTATTTACATTTCAT+TGG | + | chr3_4:59320371-59320390 | Msa0510310:intron | 10.0% |
| !!! | TTTGTTTTTTGTTTTGTAAT+GGG | + | chr3_4:59320248-59320267 | Msa0510310:intron | 15.0% |
| !! | AAGATAAATATTTCTTAACT+TGG | + | chr3_4:59320273-59320292 | Msa0510310:intron | 15.0% |
| !! | TGTTAATTATTTCATTACAT+TGG | + | chr3_4:59320637-59320656 | Msa0510310:intron | 15.0% |
| !! | TGTTAATTATTTCATTACAT+TGG | + | chr3_4:59320637-59320656 | Msa0510310:intron | 15.0% |
| !!! | TTTGTTTTTTGTTTTGTAAT+GGG | + | chr3_4:59320248-59320267 | Msa0510310:intron | 15.0% |
| !! | AAGATAAATATTTCTTAACT+TGG | + | chr3_4:59320273-59320292 | Msa0510310:intron | 15.0% |
| !! | TGTTAATTATTTCATTACAT+TGG | + | chr3_4:59320637-59320656 | Msa0510310:intron | 15.0% |
| !! | TGTTAATTATTTCATTACAT+TGG | + | chr3_4:59320637-59320656 | Msa0510310:intron | 15.0% |
| !!! | AGCGAATATTTATTTTGTTA+AGG | + | chr3_4:59319470-59319489 | Msa0510310:intron | 20.0% |
| !!! | TAACATTTTTTTTAAACTGC+AGG | + | chr3_4:59319609-59319628 | Msa0510310:intron | 20.0% |
| !!! | ATTTTTCTGAAAAAAGAAAG+AGG | + | chr3_4:59319887-59319906 | Msa0510310:CDS | 20.0% |
| !! | CAAAGTTATTGTGTAAATTA+TGG | - | chr3_4:59320232-59320251 | None:intergenic | 20.0% |
| !!! | CTTTGTTTTTTGTTTTGTAA+TGG | + | chr3_4:59320247-59320266 | Msa0510310:intron | 20.0% |
| !! | AATAATAAAAAACCAACTGT+AGG | - | chr3_4:59320361-59320380 | None:intergenic | 20.0% |
| !!! | AGCGAATATTTATTTTGTTA+AGG | + | chr3_4:59319470-59319489 | Msa0510310:intron | 20.0% |
| !!! | TAACATTTTTTTTAAACTGC+AGG | + | chr3_4:59319609-59319628 | Msa0510310:intron | 20.0% |
| !!! | ATTTTTCTGAAAAAAGAAAG+AGG | + | chr3_4:59319887-59319906 | Msa0510310:CDS | 20.0% |
| !! | CAAAGTTATTGTGTAAATTA+TGG | - | chr3_4:59320232-59320251 | None:intergenic | 20.0% |
| !!! | CTTTGTTTTTTGTTTTGTAA+TGG | + | chr3_4:59320247-59320266 | Msa0510310:intron | 20.0% |
| !! | AATAATAAAAAACCAACTGT+AGG | - | chr3_4:59320361-59320380 | None:intergenic | 20.0% |
| !! | TCAAAGCGATTTCAAAATTT+TGG | + | chr3_4:59319125-59319144 | Msa0510310:intron | 25.0% |
| ! | AAAAGGAAAGTAAAATGTTG+AGG | - | chr3_4:59319165-59319184 | None:intergenic | 25.0% |
| ! | AAAGATGCAAAGTAAAATCA+TGG | + | chr3_4:59319351-59319370 | Msa0510310:intron | 25.0% |
| !! | TCAAAGCGATTTCAAAATTT+TGG | + | chr3_4:59319125-59319144 | Msa0510310:intron | 25.0% |
| ! | AAAAGGAAAGTAAAATGTTG+AGG | - | chr3_4:59319165-59319184 | None:intergenic | 25.0% |
| ! | AAAGATGCAAAGTAAAATCA+TGG | + | chr3_4:59319351-59319370 | Msa0510310:intron | 25.0% |
| TGAGCAAGTTAGAAATGAAA+AGG | - | chr3_4:59319182-59319201 | None:intergenic | 30.0% | |
| !!! | GCCACTTGATTTTGATTTAA+TGG | + | chr3_4:59319235-59319254 | Msa0510310:intron | 30.0% |
| GCCATTAAATCAAAATCAAG+TGG | - | chr3_4:59319239-59319258 | None:intergenic | 30.0% | |
| AACCATTTGAATGGAACTTT+AGG | - | chr3_4:59319280-59319299 | None:intergenic | 30.0% | |
| ! | GTATGCACTTCTTAACATTT+TGG | - | chr3_4:59319314-59319333 | None:intergenic | 30.0% |
| ! | TCTTTTACAAGATCTGTAAC+AGG | - | chr3_4:59319336-59319355 | None:intergenic | 30.0% |
| ATATGCAGCATCATAATTCA+TGG | - | chr3_4:59319586-59319605 | None:intergenic | 30.0% | |
| GTAACAGTATCAAAAGTTGA+TGG | + | chr3_4:59319724-59319743 | Msa0510310:CDS | 30.0% | |
| !! | TGATGGTTCTTTTGCTTTTA+AGG | + | chr3_4:59319741-59319760 | Msa0510310:CDS | 30.0% |
| !! | TTTTGCTTTTAAGGAAGGAT+GGG | + | chr3_4:59319750-59319769 | Msa0510310:CDS | 30.0% |
| ! | GCTTGAAAAAGGATATTTTC+TGG | + | chr3_4:59319795-59319814 | Msa0510310:CDS | 30.0% |
| ATGATAAGTCTATGTGTGAA+AGG | + | chr3_4:59319860-59319879 | Msa0510310:CDS | 30.0% | |
| TGATAAGTCTATGTGTGAAA+GGG | + | chr3_4:59319861-59319880 | Msa0510310:CDS | 30.0% | |
| ! | AAGATGGTAATGTAGATAGA+AGG | + | chr3_4:59320007-59320026 | Msa0510310:CDS | 30.0% |
| ! | AGATGGTAATGTAGATAGAA+GGG | + | chr3_4:59320008-59320027 | Msa0510310:CDS | 30.0% |
| ATGCATCATTTAGATCTACA+TGG | - | chr3_4:59320077-59320096 | None:intergenic | 30.0% | |
| ! | CGTTGGAAAGAAAAGATTTT+TGG | + | chr3_4:59320166-59320185 | Msa0510310:CDS | 30.0% |
| AATTATGGTACCAAAACTCT+CGG | - | chr3_4:59320217-59320236 | None:intergenic | 30.0% | |
| ACTTGGTTGTTTATACTTGT+AGG | + | chr3_4:59320290-59320309 | Msa0510310:intron | 30.0% | |
| CTTGGTTGTTTATACTTGTA+GGG | + | chr3_4:59320291-59320310 | Msa0510310:intron | 30.0% | |
| !!! | CATTTCATTGGCTCATTTTT+AGG | + | chr3_4:59320383-59320402 | Msa0510310:intron | 30.0% |
| !! | TTTTTAGGAAGTGATCAAGT+TGG | + | chr3_4:59320398-59320417 | Msa0510310:intron | 30.0% |
| !!! | CATTTCATTGGCTCATTTTT+AGG | + | chr3_4:59320383-59320402 | Msa0510310:intron | 30.0% |
| AGAATCCATTATGTCCAATA+AGG | + | chr3_4:59320539-59320558 | Msa0510310:CDS | 30.0% | |
| CTTCTTGTTCATTTAGTTGA+CGG | + | chr3_4:59320604-59320623 | Msa0510310:intron | 30.0% | |
| !!! | CATTACATTGGCTCATTTTT+AGG | + | chr3_4:59320649-59320668 | Msa0510310:intron | 30.0% |
| AGAATCCATTATGTCCAATA+AGG | + | chr3_4:59320539-59320558 | Msa0510310:CDS | 30.0% | |
| CTTCTTGTTCATTTAGTTGA+TGG | + | chr3_4:59320604-59320623 | Msa0510310:intron | 30.0% | |
| !!! | CATTACATTGGCTCATTTTT+AGG | + | chr3_4:59320649-59320668 | Msa0510310:intron | 30.0% |
| AGAATCCATTATGTCCAATA+AGG | + | chr3_4:59320539-59320558 | Msa0510310:CDS | 30.0% | |
| TGAGCAAGTTAGAAATGAAA+AGG | - | chr3_4:59319182-59319201 | None:intergenic | 30.0% | |
| !!! | GCCACTTGATTTTGATTTAA+TGG | + | chr3_4:59319235-59319254 | Msa0510310:intron | 30.0% |
| GCCATTAAATCAAAATCAAG+TGG | - | chr3_4:59319239-59319258 | None:intergenic | 30.0% | |
| AACCATTTGAATGGAACTTT+AGG | - | chr3_4:59319280-59319299 | None:intergenic | 30.0% | |
| ! | GTATGCACTTCTTAACATTT+TGG | - | chr3_4:59319314-59319333 | None:intergenic | 30.0% |
| ! | TCTTTTACAAGATCTGTAAC+AGG | - | chr3_4:59319336-59319355 | None:intergenic | 30.0% |
| ATATGCAGCATCATAATTCA+TGG | - | chr3_4:59319586-59319605 | None:intergenic | 30.0% | |
| GTAACAGTATCAAAAGTTGA+TGG | + | chr3_4:59319724-59319743 | Msa0510310:CDS | 30.0% | |
| !! | TGATGGTTCTTTTGCTTTTA+AGG | + | chr3_4:59319741-59319760 | Msa0510310:CDS | 30.0% |
| !! | TTTTGCTTTTAAGGAAGGAT+GGG | + | chr3_4:59319750-59319769 | Msa0510310:CDS | 30.0% |
| ! | GCTTGAAAAAGGATATTTTC+TGG | + | chr3_4:59319795-59319814 | Msa0510310:CDS | 30.0% |
| ATGATAAGTCTATGTGTGAA+AGG | + | chr3_4:59319860-59319879 | Msa0510310:CDS | 30.0% | |
| TGATAAGTCTATGTGTGAAA+GGG | + | chr3_4:59319861-59319880 | Msa0510310:CDS | 30.0% | |
| ! | AAGATGGTAATGTAGATAGA+AGG | + | chr3_4:59320007-59320026 | Msa0510310:CDS | 30.0% |
| ! | AGATGGTAATGTAGATAGAA+GGG | + | chr3_4:59320008-59320027 | Msa0510310:CDS | 30.0% |
| ATGCATCATTTAGATCTACA+TGG | - | chr3_4:59320077-59320096 | None:intergenic | 30.0% | |
| ! | CGTTGGAAAGAAAAGATTTT+TGG | + | chr3_4:59320166-59320185 | Msa0510310:CDS | 30.0% |
| AATTATGGTACCAAAACTCT+CGG | - | chr3_4:59320217-59320236 | None:intergenic | 30.0% | |
| ACTTGGTTGTTTATACTTGT+AGG | + | chr3_4:59320290-59320309 | Msa0510310:intron | 30.0% | |
| CTTGGTTGTTTATACTTGTA+GGG | + | chr3_4:59320291-59320310 | Msa0510310:intron | 30.0% | |
| !!! | CATTTCATTGGCTCATTTTT+AGG | + | chr3_4:59320383-59320402 | Msa0510310:intron | 30.0% |
| !! | TTTTTAGGAAGTGATCAAGT+TGG | + | chr3_4:59320398-59320417 | Msa0510310:intron | 30.0% |
| !!! | CATTTCATTGGCTCATTTTT+AGG | + | chr3_4:59320383-59320402 | Msa0510310:intron | 30.0% |
| AGAATCCATTATGTCCAATA+AGG | + | chr3_4:59320539-59320558 | Msa0510310:CDS | 30.0% | |
| CTTCTTGTTCATTTAGTTGA+CGG | + | chr3_4:59320604-59320623 | Msa0510310:intron | 30.0% | |
| !!! | CATTACATTGGCTCATTTTT+AGG | + | chr3_4:59320649-59320668 | Msa0510310:intron | 30.0% |
| AGAATCCATTATGTCCAATA+AGG | + | chr3_4:59320539-59320558 | Msa0510310:CDS | 30.0% | |
| CTTCTTGTTCATTTAGTTGA+TGG | + | chr3_4:59320604-59320623 | Msa0510310:intron | 30.0% | |
| !!! | CATTACATTGGCTCATTTTT+AGG | + | chr3_4:59320649-59320668 | Msa0510310:intron | 30.0% |
| AGAATCCATTATGTCCAATA+AGG | + | chr3_4:59320539-59320558 | Msa0510310:CDS | 30.0% | |
| GCAAATATTGCCGTGATATT+TGG | + | chr3_4:59318848-59318867 | Msa0510310:CDS | 35.0% | |
| ! | AGTTGAAGTGTTTGTTGAAG+CGG | - | chr3_4:59318918-59318937 | None:intergenic | 35.0% |
| AGAATGAAAAGGAAAACCCT+AGG | - | chr3_4:59318949-59318968 | None:intergenic | 35.0% | |
| CTCTGAATGGAAGAATGAAA+AGG | - | chr3_4:59318960-59318979 | None:intergenic | 35.0% | |
| AGTGATGAAAGAATCTACAG+TGG | - | chr3_4:59319053-59319072 | None:intergenic | 35.0% | |
| AATGGCTAAATATGCAAAGC+AGG | + | chr3_4:59319253-59319272 | Msa0510310:intron | 35.0% | |
| GACCTAAAGTTCCATTCAAA+TGG | + | chr3_4:59319275-59319294 | Msa0510310:intron | 35.0% | |
| GATGCAAAGTAAAATCATGG+TGG | + | chr3_4:59319354-59319373 | Msa0510310:intron | 35.0% | |
| GAACAGTTTGGTATCAAGTT+AGG | - | chr3_4:59319400-59319419 | None:intergenic | 35.0% | |
| TTGATACCAAACTGTTCACA+TGG | + | chr3_4:59319403-59319422 | Msa0510310:intron | 35.0% | |
| ! | ATGGTAGGATTTAACTTAGG+AGG | - | chr3_4:59319640-59319659 | None:intergenic | 35.0% |
| ! | GACATGGTAGGATTTAACTT+AGG | - | chr3_4:59319643-59319662 | None:intergenic | 35.0% |
| AAATCCTACCATGTCATTGT+TGG | + | chr3_4:59319648-59319667 | Msa0510310:CDS | 35.0% | |
| TGGTAAGAAAATCTATCTCG+AGG | + | chr3_4:59319672-59319691 | Msa0510310:CDS | 35.0% | |
| !! | GGTTCTTTTGCTTTTAAGGA+AGG | + | chr3_4:59319745-59319764 | Msa0510310:CDS | 35.0% |
| !! | CTTTTGCTTTTAAGGAAGGA+TGG | + | chr3_4:59319749-59319768 | Msa0510310:CDS | 35.0% |
| GAAACAAGTTCTACGCTATT+TGG | - | chr3_4:59319985-59320004 | None:intergenic | 35.0% | |
| ! | GTAGAACTTGTTTCAGAAGA+TGG | + | chr3_4:59319991-59320010 | Msa0510310:CDS | 35.0% |
| ! | TCCTATGTTTGAAGAAGTGT+TGG | + | chr3_4:59320113-59320132 | Msa0510310:CDS | 35.0% |
| !! | CCTATGTTTGAAGAAGTGTT+GGG | + | chr3_4:59320114-59320133 | Msa0510310:CDS | 35.0% |
| GTTTATACTTGTAGGGTTTC+AGG | + | chr3_4:59320298-59320317 | Msa0510310:intron | 35.0% | |
| GCAAATATTGCCGTGATATT+TGG | + | chr3_4:59318848-59318867 | Msa0510310:CDS | 35.0% | |
| ! | AGTTGAAGTGTTTGTTGAAG+CGG | - | chr3_4:59318918-59318937 | None:intergenic | 35.0% |
| AGAATGAAAAGGAAAACCCT+AGG | - | chr3_4:59318949-59318968 | None:intergenic | 35.0% | |
| CTCTGAATGGAAGAATGAAA+AGG | - | chr3_4:59318960-59318979 | None:intergenic | 35.0% | |
| AGTGATGAAAGAATCTACAG+TGG | - | chr3_4:59319053-59319072 | None:intergenic | 35.0% | |
| AATGGCTAAATATGCAAAGC+AGG | + | chr3_4:59319253-59319272 | Msa0510310:intron | 35.0% | |
| GACCTAAAGTTCCATTCAAA+TGG | + | chr3_4:59319275-59319294 | Msa0510310:intron | 35.0% | |
| GATGCAAAGTAAAATCATGG+TGG | + | chr3_4:59319354-59319373 | Msa0510310:intron | 35.0% | |
| GAACAGTTTGGTATCAAGTT+AGG | - | chr3_4:59319400-59319419 | None:intergenic | 35.0% | |
| TTGATACCAAACTGTTCACA+TGG | + | chr3_4:59319403-59319422 | Msa0510310:intron | 35.0% | |
| ! | ATGGTAGGATTTAACTTAGG+AGG | - | chr3_4:59319640-59319659 | None:intergenic | 35.0% |
| ! | GACATGGTAGGATTTAACTT+AGG | - | chr3_4:59319643-59319662 | None:intergenic | 35.0% |
| AAATCCTACCATGTCATTGT+TGG | + | chr3_4:59319648-59319667 | Msa0510310:CDS | 35.0% | |
| TGGTAAGAAAATCTATCTCG+AGG | + | chr3_4:59319672-59319691 | Msa0510310:CDS | 35.0% | |
| !! | GGTTCTTTTGCTTTTAAGGA+AGG | + | chr3_4:59319745-59319764 | Msa0510310:CDS | 35.0% |
| !! | CTTTTGCTTTTAAGGAAGGA+TGG | + | chr3_4:59319749-59319768 | Msa0510310:CDS | 35.0% |
| GAAACAAGTTCTACGCTATT+TGG | - | chr3_4:59319985-59320004 | None:intergenic | 35.0% | |
| ! | GTAGAACTTGTTTCAGAAGA+TGG | + | chr3_4:59319991-59320010 | Msa0510310:CDS | 35.0% |
| ! | TCCTATGTTTGAAGAAGTGT+TGG | + | chr3_4:59320113-59320132 | Msa0510310:CDS | 35.0% |
| !! | CCTATGTTTGAAGAAGTGTT+GGG | + | chr3_4:59320114-59320133 | Msa0510310:CDS | 35.0% |
| GTTTATACTTGTAGGGTTTC+AGG | + | chr3_4:59320298-59320317 | Msa0510310:intron | 35.0% | |
| CAATATTTGCATCGAAACGC+GGG | - | chr3_4:59318838-59318857 | None:intergenic | 40.0% | |
| GCAATATTTGCATCGAAACG+CGG | - | chr3_4:59318839-59318858 | None:intergenic | 40.0% | |
| CCAGTGTCTTCCAAATATCA+CGG | - | chr3_4:59318861-59318880 | None:intergenic | 40.0% | |
| ACTTCAACTTTCTCCAACCT+AGG | + | chr3_4:59318929-59318948 | Msa0510310:CDS | 40.0% | |
| CTTCAACTTTCTCCAACCTA+GGG | + | chr3_4:59318930-59318949 | Msa0510310:CDS | 40.0% | |
| TGAAAAGGAAAACCCTAGGT+TGG | - | chr3_4:59318945-59318964 | None:intergenic | 40.0% | |
| AGAGAAGAAGAACAGTGCAA+TGG | + | chr3_4:59318987-59319006 | Msa0510310:CDS | 40.0% | |
| ATAAGCCTGCAGAAAGAGTT+GGG | - | chr3_4:59319099-59319118 | None:intergenic | 40.0% | |
| GCATAGTGCAACCATTTGAA+TGG | - | chr3_4:59319289-59319308 | None:intergenic | 40.0% | |
| ACCAAACTGTTCACATGGTT+TGG | + | chr3_4:59319408-59319427 | Msa0510310:intron | 40.0% | |
| ACCAAACCATGTGAACAGTT+TGG | - | chr3_4:59319412-59319431 | None:intergenic | 40.0% | |
| CTTACCAACCAACAATGACA+TGG | - | chr3_4:59319659-59319678 | None:intergenic | 40.0% | |
| ! | AGGATGGGATGTTTTCTCAT+CGG | + | chr3_4:59319765-59319784 | Msa0510310:CDS | 40.0% |
| ACTTGATGTGCCAATGCATA+TGG | + | chr3_4:59319939-59319958 | Msa0510310:CDS | 40.0% | |
| CTTGATGTGCCAATGCATAT+GGG | + | chr3_4:59319940-59319959 | Msa0510310:CDS | 40.0% | |
| TTGATGTGCCAATGCATATG+GGG | + | chr3_4:59319941-59319960 | Msa0510310:CDS | 40.0% | |
| CCCAACACTTCTTCAAACAT+AGG | - | chr3_4:59320117-59320136 | None:intergenic | 40.0% | |
| ! | CAACGATTTAGAAGCGTATG+AGG | - | chr3_4:59320151-59320170 | None:intergenic | 40.0% |
| CTCATACGCTTCTAAATCGT+TGG | + | chr3_4:59320149-59320168 | Msa0510310:CDS | 40.0% | |
| TTGTAGGGTTTCAGGCATTA+TGG | + | chr3_4:59320306-59320325 | Msa0510310:intron | 40.0% | |
| GTGTGATGATTTCCTACAGT+TGG | + | chr3_4:59320346-59320365 | Msa0510310:intron | 40.0% | |
| GATCAAGCAGCGAAATTCAA+AGG | + | chr3_4:59320462-59320481 | Msa0510310:CDS | 40.0% | |
| GCATGTGAACTTGAAACTTC+TGG | + | chr3_4:59320501-59320520 | Msa0510310:CDS | 40.0% | |
| ! | AACTTCTGGAAGAAGCAAAG+AGG | + | chr3_4:59320515-59320534 | Msa0510310:CDS | 40.0% |
| ! | ACTTCTGGAAGAAGCAAAGA+GGG | + | chr3_4:59320516-59320535 | Msa0510310:CDS | 40.0% |
| CAGGTCCTTATTGGACATAA+TGG | - | chr3_4:59320547-59320566 | None:intergenic | 40.0% | |
| TTCAGCAAACAGGTCCTTAT+TGG | - | chr3_4:59320556-59320575 | None:intergenic | 40.0% | |
| ! | AATAAGGACCTGTTTGCTGA+AGG | + | chr3_4:59320555-59320574 | Msa0510310:CDS | 40.0% |
| GATCAAGCAGCGATATTCAA+AGG | + | chr3_4:59320676-59320695 | Msa0510310:CDS | 40.0% | |
| GCATGTGAACTTGAAACTTC+TGG | + | chr3_4:59320501-59320520 | Msa0510310:CDS | 40.0% | |
| ! | AACTTCTGGAAGAAGCAAAG+AGG | + | chr3_4:59320515-59320534 | Msa0510310:CDS | 40.0% |
| ! | ACTTCTGGAAGAAGCAAAGA+GGG | + | chr3_4:59320516-59320535 | Msa0510310:CDS | 40.0% |
| CAGGTCCTTATTGGACATAA+TGG | - | chr3_4:59320547-59320566 | None:intergenic | 40.0% | |
| TTCAGCAAACAGGTCCTTAT+TGG | - | chr3_4:59320556-59320575 | None:intergenic | 40.0% | |
| ! | AATAAGGACCTGTTTGCTGA+AGG | + | chr3_4:59320555-59320574 | Msa0510310:CDS | 40.0% |
| GATCAAGCAGCGATATTCAA+AGG | + | chr3_4:59320676-59320695 | Msa0510310:CDS | 40.0% | |
| GCATGTGAACTTGAAACTTC+TGG | + | chr3_4:59320501-59320520 | Msa0510310:CDS | 40.0% | |
| ! | AACTTCTGGAAGAAGCAAAG+AGG | + | chr3_4:59320515-59320534 | Msa0510310:CDS | 40.0% |
| ! | ACTTCTGGAAGAAGCAAAGA+GGG | + | chr3_4:59320516-59320535 | Msa0510310:CDS | 40.0% |
| CAGGTCCTTATTGGACATAA+TGG | - | chr3_4:59320547-59320566 | None:intergenic | 40.0% | |
| TTCAGCAAACAGGTCCTTAT+TGG | - | chr3_4:59320556-59320575 | None:intergenic | 40.0% | |
| ! | AATAAGGACCTGTTTGCTGA+AGG | + | chr3_4:59320555-59320574 | Msa0510310:CDS | 40.0% |
| CAATATTTGCATCGAAACGC+GGG | - | chr3_4:59318838-59318857 | None:intergenic | 40.0% | |
| GCAATATTTGCATCGAAACG+CGG | - | chr3_4:59318839-59318858 | None:intergenic | 40.0% | |
| CCAGTGTCTTCCAAATATCA+CGG | - | chr3_4:59318861-59318880 | None:intergenic | 40.0% | |
| ACTTCAACTTTCTCCAACCT+AGG | + | chr3_4:59318929-59318948 | Msa0510310:CDS | 40.0% | |
| CTTCAACTTTCTCCAACCTA+GGG | + | chr3_4:59318930-59318949 | Msa0510310:CDS | 40.0% | |
| TGAAAAGGAAAACCCTAGGT+TGG | - | chr3_4:59318945-59318964 | None:intergenic | 40.0% | |
| AGAGAAGAAGAACAGTGCAA+TGG | + | chr3_4:59318987-59319006 | Msa0510310:CDS | 40.0% | |
| ATAAGCCTGCAGAAAGAGTT+GGG | - | chr3_4:59319099-59319118 | None:intergenic | 40.0% | |
| GCATAGTGCAACCATTTGAA+TGG | - | chr3_4:59319289-59319308 | None:intergenic | 40.0% | |
| ACCAAACTGTTCACATGGTT+TGG | + | chr3_4:59319408-59319427 | Msa0510310:intron | 40.0% | |
| ACCAAACCATGTGAACAGTT+TGG | - | chr3_4:59319412-59319431 | None:intergenic | 40.0% | |
| CTTACCAACCAACAATGACA+TGG | - | chr3_4:59319659-59319678 | None:intergenic | 40.0% | |
| ! | AGGATGGGATGTTTTCTCAT+CGG | + | chr3_4:59319765-59319784 | Msa0510310:CDS | 40.0% |
| ACTTGATGTGCCAATGCATA+TGG | + | chr3_4:59319939-59319958 | Msa0510310:CDS | 40.0% | |
| CTTGATGTGCCAATGCATAT+GGG | + | chr3_4:59319940-59319959 | Msa0510310:CDS | 40.0% | |
| TTGATGTGCCAATGCATATG+GGG | + | chr3_4:59319941-59319960 | Msa0510310:CDS | 40.0% | |
| CCCAACACTTCTTCAAACAT+AGG | - | chr3_4:59320117-59320136 | None:intergenic | 40.0% | |
| ! | CAACGATTTAGAAGCGTATG+AGG | - | chr3_4:59320151-59320170 | None:intergenic | 40.0% |
| CTCATACGCTTCTAAATCGT+TGG | + | chr3_4:59320149-59320168 | Msa0510310:CDS | 40.0% | |
| TTGTAGGGTTTCAGGCATTA+TGG | + | chr3_4:59320306-59320325 | Msa0510310:intron | 40.0% | |
| GTGTGATGATTTCCTACAGT+TGG | + | chr3_4:59320346-59320365 | Msa0510310:intron | 40.0% | |
| GATCAAGCAGCGAAATTCAA+AGG | + | chr3_4:59320462-59320481 | Msa0510310:CDS | 40.0% | |
| GCATGTGAACTTGAAACTTC+TGG | + | chr3_4:59320501-59320520 | Msa0510310:CDS | 40.0% | |
| ! | AACTTCTGGAAGAAGCAAAG+AGG | + | chr3_4:59320515-59320534 | Msa0510310:CDS | 40.0% |
| ! | ACTTCTGGAAGAAGCAAAGA+GGG | + | chr3_4:59320516-59320535 | Msa0510310:CDS | 40.0% |
| CAGGTCCTTATTGGACATAA+TGG | - | chr3_4:59320547-59320566 | None:intergenic | 40.0% | |
| TTCAGCAAACAGGTCCTTAT+TGG | - | chr3_4:59320556-59320575 | None:intergenic | 40.0% | |
| ! | AATAAGGACCTGTTTGCTGA+AGG | + | chr3_4:59320555-59320574 | Msa0510310:CDS | 40.0% |
| GATCAAGCAGCGATATTCAA+AGG | + | chr3_4:59320676-59320695 | Msa0510310:CDS | 40.0% | |
| GCATGTGAACTTGAAACTTC+TGG | + | chr3_4:59320501-59320520 | Msa0510310:CDS | 40.0% | |
| ! | AACTTCTGGAAGAAGCAAAG+AGG | + | chr3_4:59320515-59320534 | Msa0510310:CDS | 40.0% |
| ! | ACTTCTGGAAGAAGCAAAGA+GGG | + | chr3_4:59320516-59320535 | Msa0510310:CDS | 40.0% |
| CAGGTCCTTATTGGACATAA+TGG | - | chr3_4:59320547-59320566 | None:intergenic | 40.0% | |
| TTCAGCAAACAGGTCCTTAT+TGG | - | chr3_4:59320556-59320575 | None:intergenic | 40.0% | |
| ! | AATAAGGACCTGTTTGCTGA+AGG | + | chr3_4:59320555-59320574 | Msa0510310:CDS | 40.0% |
| GATCAAGCAGCGATATTCAA+AGG | + | chr3_4:59320676-59320695 | Msa0510310:CDS | 40.0% | |
| GCATGTGAACTTGAAACTTC+TGG | + | chr3_4:59320501-59320520 | Msa0510310:CDS | 40.0% | |
| ! | AACTTCTGGAAGAAGCAAAG+AGG | + | chr3_4:59320515-59320534 | Msa0510310:CDS | 40.0% |
| ! | ACTTCTGGAAGAAGCAAAGA+GGG | + | chr3_4:59320516-59320535 | Msa0510310:CDS | 40.0% |
| CAGGTCCTTATTGGACATAA+TGG | - | chr3_4:59320547-59320566 | None:intergenic | 40.0% | |
| TTCAGCAAACAGGTCCTTAT+TGG | - | chr3_4:59320556-59320575 | None:intergenic | 40.0% | |
| ! | AATAAGGACCTGTTTGCTGA+AGG | + | chr3_4:59320555-59320574 | Msa0510310:CDS | 40.0% |
| CCGTGATATTTGGAAGACAC+TGG | + | chr3_4:59318858-59318877 | Msa0510310:CDS | 45.0% | |
| ! | CTGGAGCTTTTCTCTAAACG+TGG | + | chr3_4:59318877-59318896 | Msa0510310:CDS | 45.0% |
| ! | GAAGTGTTTGTTGAAGCGGT+GGG | - | chr3_4:59318914-59318933 | None:intergenic | 45.0% |
| ! | TGAAGTGTTTGTTGAAGCGG+TGG | - | chr3_4:59318915-59318934 | None:intergenic | 45.0% |
| ! | TTCTCTCTCAGTGCTCTGAA+TGG | - | chr3_4:59318973-59318992 | None:intergenic | 45.0% |
| CATAAGCCTGCAGAAAGAGT+TGG | - | chr3_4:59319100-59319119 | None:intergenic | 45.0% | |
| CCAACCAACAATGACATGGT+AGG | - | chr3_4:59319655-59319674 | None:intergenic | 45.0% | |
| CCTACCATGTCATTGTTGGT+TGG | + | chr3_4:59319652-59319671 | Msa0510310:CDS | 45.0% | |
| AACCTCAACCGGTAAGAGAT+GGG | + | chr3_4:59319699-59319718 | Msa0510310:CDS | 45.0% | |
| TGTTACAGCCCATCTCTTAC+CGG | - | chr3_4:59319710-59319729 | None:intergenic | 45.0% | |
| TCGGCTCACAAGCTTGAAAA+AGG | + | chr3_4:59319784-59319803 | Msa0510310:CDS | 45.0% | |
| AAGAGAAGTAGATGCAGCAG+TGG | + | chr3_4:59319913-59319932 | Msa0510310:CDS | 45.0% | |
| TGATGTGCCAATGCATATGG+GGG | + | chr3_4:59319942-59319961 | Msa0510310:CDS | 45.0% | |
| ACATCAACCCCCATATGCAT+TGG | - | chr3_4:59319952-59319971 | None:intergenic | 45.0% | |
| !! | ATGCATATGGGGGTTGATGT+AGG | + | chr3_4:59319952-59319971 | Msa0510310:CDS | 45.0% |
| !! | TTTGAAGAAGTGTTGGGCTC+AGG | + | chr3_4:59320120-59320139 | Msa0510310:CDS | 45.0% |
| !! | TTGAAGAAGTGTTGGGCTCA+GGG | + | chr3_4:59320121-59320140 | Msa0510310:CDS | 45.0% |
| TACCAAAACTCTCGGTGACT+TGG | - | chr3_4:59320209-59320228 | None:intergenic | 45.0% | |
| TACCTAAGCCTTCAGCAAAC+AGG | - | chr3_4:59320566-59320585 | None:intergenic | 45.0% | |
| TACCTAAGCCTTCAGCAAAC+AGG | - | chr3_4:59320566-59320585 | None:intergenic | 45.0% | |
| TACCTAAGCCTTCAGCAAAC+AGG | - | chr3_4:59320566-59320585 | None:intergenic | 45.0% | |
| CCGTGATATTTGGAAGACAC+TGG | + | chr3_4:59318858-59318877 | Msa0510310:CDS | 45.0% | |
| ! | CTGGAGCTTTTCTCTAAACG+TGG | + | chr3_4:59318877-59318896 | Msa0510310:CDS | 45.0% |
| ! | GAAGTGTTTGTTGAAGCGGT+GGG | - | chr3_4:59318914-59318933 | None:intergenic | 45.0% |
| ! | TGAAGTGTTTGTTGAAGCGG+TGG | - | chr3_4:59318915-59318934 | None:intergenic | 45.0% |
| ! | TTCTCTCTCAGTGCTCTGAA+TGG | - | chr3_4:59318973-59318992 | None:intergenic | 45.0% |
| CATAAGCCTGCAGAAAGAGT+TGG | - | chr3_4:59319100-59319119 | None:intergenic | 45.0% | |
| CCAACCAACAATGACATGGT+AGG | - | chr3_4:59319655-59319674 | None:intergenic | 45.0% | |
| CCTACCATGTCATTGTTGGT+TGG | + | chr3_4:59319652-59319671 | Msa0510310:CDS | 45.0% | |
| AACCTCAACCGGTAAGAGAT+GGG | + | chr3_4:59319699-59319718 | Msa0510310:CDS | 45.0% | |
| TGTTACAGCCCATCTCTTAC+CGG | - | chr3_4:59319710-59319729 | None:intergenic | 45.0% | |
| TCGGCTCACAAGCTTGAAAA+AGG | + | chr3_4:59319784-59319803 | Msa0510310:CDS | 45.0% | |
| AAGAGAAGTAGATGCAGCAG+TGG | + | chr3_4:59319913-59319932 | Msa0510310:CDS | 45.0% | |
| TGATGTGCCAATGCATATGG+GGG | + | chr3_4:59319942-59319961 | Msa0510310:CDS | 45.0% | |
| ACATCAACCCCCATATGCAT+TGG | - | chr3_4:59319952-59319971 | None:intergenic | 45.0% | |
| !! | ATGCATATGGGGGTTGATGT+AGG | + | chr3_4:59319952-59319971 | Msa0510310:CDS | 45.0% |
| !! | TTTGAAGAAGTGTTGGGCTC+AGG | + | chr3_4:59320120-59320139 | Msa0510310:CDS | 45.0% |
| !! | TTGAAGAAGTGTTGGGCTCA+GGG | + | chr3_4:59320121-59320140 | Msa0510310:CDS | 45.0% |
| TACCAAAACTCTCGGTGACT+TGG | - | chr3_4:59320209-59320228 | None:intergenic | 45.0% | |
| TACCTAAGCCTTCAGCAAAC+AGG | - | chr3_4:59320566-59320585 | None:intergenic | 45.0% | |
| TACCTAAGCCTTCAGCAAAC+AGG | - | chr3_4:59320566-59320585 | None:intergenic | 45.0% | |
| TACCTAAGCCTTCAGCAAAC+AGG | - | chr3_4:59320566-59320585 | None:intergenic | 45.0% | |
| TTGCATCGAAACGCGGGAAT+TGG | - | chr3_4:59318832-59318851 | None:intergenic | 50.0% | |
| CTCGAGGATTCAACCTCAAC+CGG | + | chr3_4:59319688-59319707 | Msa0510310:CDS | 50.0% | |
| CAACCTCAACCGGTAAGAGA+TGG | + | chr3_4:59319698-59319717 | Msa0510310:CDS | 50.0% | |
| !! | CATATGGGGGTTGATGTAGG+TGG | + | chr3_4:59319955-59319974 | Msa0510310:CDS | 50.0% |
| !! | TGAAGAAGTGTTGGGCTCAG+GGG | + | chr3_4:59320122-59320141 | Msa0510310:CDS | 50.0% |
| ! | AGCCAAGTCACCGAGAGTTT+TGG | + | chr3_4:59320204-59320223 | Msa0510310:CDS | 50.0% |
| ! | GACCTGTTTGCTGAAGGCTT+AGG | + | chr3_4:59320561-59320580 | Msa0510310:CDS | 50.0% |
| ! | GACCTGTTTGCTGAAGGCTT+AGG | + | chr3_4:59320561-59320580 | Msa0510310:CDS | 50.0% |
| ! | GACCTGTTTGCTGAAGGCTT+AGG | + | chr3_4:59320561-59320580 | Msa0510310:CDS | 50.0% |
| TTGCATCGAAACGCGGGAAT+TGG | - | chr3_4:59318832-59318851 | None:intergenic | 50.0% | |
| CTCGAGGATTCAACCTCAAC+CGG | + | chr3_4:59319688-59319707 | Msa0510310:CDS | 50.0% | |
| CAACCTCAACCGGTAAGAGA+TGG | + | chr3_4:59319698-59319717 | Msa0510310:CDS | 50.0% | |
| !! | CATATGGGGGTTGATGTAGG+TGG | + | chr3_4:59319955-59319974 | Msa0510310:CDS | 50.0% |
| !! | TGAAGAAGTGTTGGGCTCAG+GGG | + | chr3_4:59320122-59320141 | Msa0510310:CDS | 50.0% |
| ! | AGCCAAGTCACCGAGAGTTT+TGG | + | chr3_4:59320204-59320223 | Msa0510310:CDS | 50.0% |
| ! | GACCTGTTTGCTGAAGGCTT+AGG | + | chr3_4:59320561-59320580 | Msa0510310:CDS | 50.0% |
| ! | GACCTGTTTGCTGAAGGCTT+AGG | + | chr3_4:59320561-59320580 | Msa0510310:CDS | 50.0% |
| ! | GACCTGTTTGCTGAAGGCTT+AGG | + | chr3_4:59320561-59320580 | Msa0510310:CDS | 50.0% |
| ! | GTGTTTGTTGAAGCGGTGGG+AGG | - | chr3_4:59318911-59318930 | None:intergenic | 55.0% |
| !! | GAGTTGGGCGAGGTTGATGT+TGG | - | chr3_4:59319084-59319103 | None:intergenic | 55.0% |
| ! | AGCCCATCTCTTACCGGTTG+AGG | - | chr3_4:59319704-59319723 | None:intergenic | 55.0% |
| ! | GTGTTTGTTGAAGCGGTGGG+AGG | - | chr3_4:59318911-59318930 | None:intergenic | 55.0% |
| !! | GAGTTGGGCGAGGTTGATGT+TGG | - | chr3_4:59319084-59319103 | None:intergenic | 55.0% |
| ! | AGCCCATCTCTTACCGGTTG+AGG | - | chr3_4:59319704-59319723 | None:intergenic | 55.0% |
| TTGTTGAAGCGGTGGGAGGC+AGG | - | chr3_4:59318907-59318926 | None:intergenic | 60.0% | |
| CCTGCAGAAAGAGTTGGGCG+AGG | - | chr3_4:59319094-59319113 | None:intergenic | 60.0% | |
| CCTCGCCCAACTCTTTCTGC+AGG | + | chr3_4:59319091-59319110 | Msa0510310:intron | 60.0% | |
| TTGTTGAAGCGGTGGGAGGC+AGG | - | chr3_4:59318907-59318926 | None:intergenic | 60.0% | |
| CCTGCAGAAAGAGTTGGGCG+AGG | - | chr3_4:59319094-59319113 | None:intergenic | 60.0% | |
| CCTCGCCCAACTCTTTCTGC+AGG | + | chr3_4:59319091-59319110 | Msa0510310:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 59318820 | 59321051 | 59318820 | ID=Msa0510310;Name=Msa0510310 |
| chr3_4 | mRNA | 59318820 | 59321051 | 59318820 | ID=Msa0510310-mRNA-1;Parent=Msa0510310;Name=Msa0510310-mRNA-1;_AED=0.17;_eAED=0.19;_QI=0|0.75|0.2|1|1|0.8|5|0|407 |
| chr3_4 | exon | 59318820 | 59319029 | 59318820 | ID=Msa0510310-mRNA-1:exon:13848;Parent=Msa0510310-mRNA-1 |
| chr3_4 | exon | 59319631 | 59320225 | 59319631 | ID=Msa0510310-mRNA-1:exon:13849;Parent=Msa0510310-mRNA-1 |
| chr3_4 | exon | 59320457 | 59320582 | 59320457 | ID=Msa0510310-mRNA-1:exon:13850;Parent=Msa0510310-mRNA-1 |
| chr3_4 | exon | 59320671 | 59320796 | 59320671 | ID=Msa0510310-mRNA-1:exon:13851;Parent=Msa0510310-mRNA-1 |
| chr3_4 | exon | 59320885 | 59321051 | 59320885 | ID=Msa0510310-mRNA-1:exon:13852;Parent=Msa0510310-mRNA-1 |
| chr3_4 | CDS | 59318820 | 59319029 | 59318820 | ID=Msa0510310-mRNA-1:cds;Parent=Msa0510310-mRNA-1 |
| chr3_4 | CDS | 59319631 | 59320225 | 59319631 | ID=Msa0510310-mRNA-1:cds;Parent=Msa0510310-mRNA-1 |
| chr3_4 | CDS | 59320457 | 59320582 | 59320457 | ID=Msa0510310-mRNA-1:cds;Parent=Msa0510310-mRNA-1 |
| chr3_4 | CDS | 59320671 | 59320796 | 59320671 | ID=Msa0510310-mRNA-1:cds;Parent=Msa0510310-mRNA-1 |
| chr3_4 | CDS | 59320885 | 59321051 | 59320885 | ID=Msa0510310-mRNA-1:cds;Parent=Msa0510310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
