AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0510820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0510820 MtrunA17_Chr3g0117091 94.842 349 16 2 1 347 1 349 0.0 655
Msa0510820 MtrunA17_Chr1g0211161 67.893 299 22 6 3 300 4 229 9.81e-130 370
Msa0510820 MtrunA17_Chr4g0058631 55.325 385 110 15 1 347 1 361 5.63e-120 350
Msa0510820 MtrunA17_Chr1g0193371 82.946 129 22 0 1 129 1 129 8.75e-77 240
Msa0510820 MtrunA17_Chr7g0270891 78.676 136 27 1 1 134 1 136 1.48e-76 239
Msa0510820 MtrunA17_Chr1g0193801 70.861 151 41 1 1 148 1 151 2.92e-74 234
Msa0510820 MtrunA17_Chr7g0271241 82.090 134 24 0 1 134 1 134 3.42e-71 226
Msa0510820 MtrunA17_Chr8g0342541 51.152 217 96 4 1 208 1 216 1.56e-66 213
Msa0510820 MtrunA17_Chr2g0330041 76.000 125 30 0 1 125 1 125 2.05e-66 214
Msa0510820 MtrunA17_Chr8g0342521 75.000 124 31 0 1 124 1 124 4.56e-66 212
Msa0510820 MtrunA17_Chr2g0309911 72.222 126 34 1 1 126 1 125 1.29e-64 207
Msa0510820 MtrunA17_Chr3g0131121 66.929 127 42 0 1 127 1 127 2.09e-61 198
Msa0510820 MtrunA17_Chr8g0342481 76.271 118 27 1 1 117 1 118 1.15e-60 199
Msa0510820 MtrunA17_Chr8g0385321 65.891 129 44 0 1 129 1 129 5.75e-60 195
Msa0510820 MtrunA17_Chr5g0435101 64.800 125 44 0 3 127 2 126 1.45e-59 191
Msa0510820 MtrunA17_Chr8g0387421 69.748 119 36 0 1 119 1 119 1.63e-59 194
Msa0510820 MtrunA17_Chr4g0037141 62.791 129 48 0 1 129 1 129 3.43e-59 192
Msa0510820 MtrunA17_Chr4g0039971 61.940 134 51 0 1 134 2 135 4.17e-59 194
Msa0510820 MtrunA17_Chr7g0217741 52.514 179 71 1 1 179 1 165 3.78e-58 190
Msa0510820 MtrunA17_Chr5g0395281 66.400 125 42 0 12 136 12 136 3.99e-58 190
Msa0510820 MtrunA17_Chr5g0434571 65.891 129 44 0 1 129 37 165 4.79e-58 191
Msa0510820 MtrunA17_Chr4g0057031 63.566 129 47 0 1 129 1 129 5.58e-58 189
Msa0510820 MtrunA17_Chr6g0452271 46.939 196 95 2 1 195 1 188 6.20e-58 191
Msa0510820 MtrunA17_Chr3g0110351 64.662 133 47 0 1 133 1 133 6.33e-58 190
Msa0510820 MtrunA17_Chr4g0042671 67.188 128 42 0 1 128 1 128 1.12e-57 192
Msa0510820 MtrunA17_Chr3g0115821 59.559 136 55 0 1 136 1 136 1.31e-57 190
Msa0510820 MtrunA17_Chr8g0349261 50.244 205 85 4 1 201 1 192 2.94e-57 187
Msa0510820 MtrunA17_Chr4g0032401 79.245 106 22 0 11 116 16 121 3.25e-57 189
Msa0510820 MtrunA17_Chr5g0397231 71.818 110 31 0 1 110 1 110 6.69e-57 188
Msa0510820 MtrunA17_Chr5g0410961 63.281 128 47 0 1 128 1 128 6.90e-57 188
Msa0510820 MtrunA17_Chr6g0453471 65.625 128 44 0 1 128 1 128 9.44e-57 188
Msa0510820 MtrunA17_Chr3g0088461 77.778 108 24 0 9 116 19 126 1.24e-56 187
Msa0510820 MtrunA17_Chr2g0328771 78.095 105 23 0 12 116 20 124 1.45e-56 186
Msa0510820 MtrunA17_Chr2g0323411 60.902 133 52 0 1 133 1 133 4.55e-56 185
Msa0510820 MtrunA17_Chr7g0228891 64.341 129 46 0 1 129 1 129 4.91e-56 184
Msa0510820 MtrunA17_Chr2g0281071 62.016 129 48 1 1 128 1 129 2.21e-55 184
Msa0510820 MtrunA17_Chr3g0103281 63.566 129 47 0 1 129 1 129 2.42e-55 183
Msa0510820 MtrunA17_Chr6g0470971 43.802 242 107 6 9 232 11 241 3.15e-55 182
Msa0510820 MtrunA17_Chr4g0048511 59.259 135 54 1 1 134 1 135 8.33e-55 183
Msa0510820 MtrunA17_Chr1g0203441 69.421 121 36 1 9 129 10 129 9.38e-54 177
Msa0510820 MtrunA17_Chr4g0044421 61.111 126 49 0 1 126 1 126 3.70e-53 174
Msa0510820 MtrunA17_Chr3g0121241 62.097 124 47 0 6 129 36 159 2.58e-52 175
Msa0510820 MtrunA17_Chr7g0274581 61.157 121 47 0 1 121 1 121 1.15e-51 170
Msa0510820 MtrunA17_Chr1g0203411 63.559 118 43 0 1 118 1 118 1.52e-51 172
Msa0510820 MtrunA17_Chr2g0323351 64.035 114 40 1 5 118 6 118 3.90e-51 170
Msa0510820 MtrunA17_Chr4g0070611 42.857 210 100 4 1 207 1 193 2.46e-50 170
Msa0510820 MtrunA17_Chr7g0261281 63.793 116 42 0 1 116 1 116 3.20e-50 169
Msa0510820 MtrunA17_Chr1g0187761 60.145 138 52 1 1 135 1 138 4.25e-50 168
Msa0510820 MtrunA17_Chr4g0070641 48.295 176 80 3 1 173 1 168 5.63e-50 164
Msa0510820 MtrunA17_Chr4g0022931 61.261 111 43 0 6 116 7 117 1.29e-49 167
Msa0510820 MtrunA17_Chr4g0022901 60.714 112 44 0 6 117 7 118 9.26e-49 165
Msa0510820 MtrunA17_Chr1g0152011 38.628 277 136 8 1 258 1 262 2.71e-48 166
Msa0510820 MtrunA17_Chr5g0417821 61.538 117 45 0 12 128 7 123 1.05e-47 162
Msa0510820 MtrunA17_Chr1g0167691 61.538 117 45 0 1 117 1 117 2.10e-47 160
Msa0510820 MtrunA17_Chr4g0022911 58.929 112 46 0 6 117 7 118 7.84e-47 160
Msa0510820 MtrunA17_Chr1g0167661 62.393 117 44 0 1 117 1 117 9.50e-47 159
Msa0510820 MtrunA17_Chr1g0151941 55.085 118 52 1 1 117 1 118 2.13e-46 158
Msa0510820 MtrunA17_Chr8g0346561 60.169 118 47 0 1 118 1 118 2.75e-46 159
Msa0510820 MtrunA17_Chr4g0068061 62.069 116 44 0 1 116 1 116 3.38e-46 160
Msa0510820 MtrunA17_Chr1g0194951 58.647 133 55 0 1 133 1 133 4.07e-46 160
Msa0510820 MtrunA17_Chr7g0275911 59.664 119 48 0 1 119 1 119 7.51e-46 157
Msa0510820 MtrunA17_Chr5g0400821 50.327 153 72 3 1 151 1 151 1.21e-45 158
Msa0510820 MtrunA17_Chr7g0217221 46.524 187 90 3 1 187 1 177 1.84e-45 156
Msa0510820 MtrunA17_Chr4g0028311 60.169 118 46 1 1 117 1 118 3.00e-45 157
Msa0510820 MtrunA17_Chr8g0342511 77.011 87 20 0 1 87 1 87 4.81e-45 149
Msa0510820 MtrunA17_Chr2g0311221 61.468 109 42 0 2 110 4 112 1.22e-44 155
Msa0510820 MtrunA17_Chr8g0342531 72.527 91 25 0 1 91 1 91 8.16e-44 148
Msa0510820 MtrunA17_Chr3g0135311 56.780 118 50 1 1 117 1 118 9.29e-44 154
Msa0510820 MtrunA17_Chr8g0343831 46.154 169 83 4 10 174 6 170 2.39e-43 150
Msa0510820 MtrunA17_Chr7g0264641 55.932 118 51 1 1 117 1 118 9.28e-43 149
Msa0510820 MtrunA17_Chr7g0254411 56.349 126 53 1 1 124 1 126 1.23e-42 150
Msa0510820 MtrunA17_Chr4g0055981 60.748 107 42 0 9 115 52 158 3.95e-42 146
Msa0510820 MtrunA17_Chr7g0247131 73.256 86 23 0 43 128 9 94 4.48e-42 147
Msa0510820 MtrunA17_Chr2g0327351 59.459 111 44 1 1 110 1 111 5.19e-42 149
Msa0510820 MtrunA17_Chr3g0092401 58.475 118 49 0 1 118 2 119 8.04e-42 148
Msa0510820 MtrunA17_Chr1g0186061 60.000 105 42 0 11 115 19 123 1.53e-41 145
Msa0510820 MtrunA17_Chr4g0060721 34.375 320 162 8 1 304 2 289 2.07e-41 147
Msa0510820 MtrunA17_Chr4g0054391 59.091 110 44 1 1 109 1 110 3.35e-41 145
Msa0510820 MtrunA17_Chr1g0168661 61.165 103 40 0 13 115 22 124 5.61e-41 144
Msa0510820 MtrunA17_Chr8g0342471 72.222 90 24 1 1 89 1 90 5.86e-41 140
Msa0510820 MtrunA17_Chr8g0342461 71.111 90 25 1 1 89 1 90 1.33e-40 139
Msa0510820 MtrunA17_Chr7g0228231 55.085 118 51 1 1 116 1 118 3.88e-40 140
Msa0510820 MtrunA17_Chr6g0453211 59.091 110 45 0 1 110 1 110 4.54e-40 143
Msa0510820 MtrunA17_Chr1g0154031 59.615 104 42 0 12 115 76 179 4.97e-40 145
Msa0510820 MtrunA17_Chr1g0180391 45.517 145 73 1 12 156 19 157 5.51e-40 140
Msa0510820 MtrunA17_Chr7g0269831 62.069 116 44 0 1 116 1 116 5.61e-40 144
Msa0510820 MtrunA17_Chr3g0099131 57.273 110 46 1 12 121 41 149 7.20e-40 147
Msa0510820 MtrunA17_Chr4g0022891 58.095 105 44 0 9 113 9 113 1.10e-39 140
Msa0510820 MtrunA17_Chr4g0072751 55.856 111 48 1 1 110 1 111 1.16e-39 143
Msa0510820 MtrunA17_Chr4g0022881 56.604 106 46 0 9 114 9 114 1.18e-39 140
Msa0510820 MtrunA17_Chr6g0450101 54.237 118 52 1 1 116 1 118 1.42e-39 139
Msa0510820 MtrunA17_Chr1g0194301 53.153 111 52 0 12 122 33 143 6.49e-39 139
Msa0510820 MtrunA17_Chr8g0354661 58.654 104 43 0 12 115 37 140 6.77e-39 145
Msa0510820 MtrunA17_Chr1g0209661 50.400 125 61 1 9 133 24 147 9.09e-39 140
Msa0510820 MtrunA17_Chr6g0487491 53.175 126 50 2 1 117 1 126 9.42e-39 138
Msa0510820 MtrunA17_Chr3g0080861 57.692 104 44 0 12 115 37 140 2.22e-38 143
Msa0510820 MtrunA17_Chr1g0194291 57.692 104 44 0 12 115 21 124 5.01e-38 136
Msa0510820 MtrunA17_Chr5g0434831 56.604 106 46 0 12 117 7 112 2.54e-37 132
Msa0510820 MtrunA17_Chr7g0240821 58.000 100 42 0 17 116 6 105 2.67e-37 134
Msa0510820 MtrunA17_Chr2g0327821 50.926 108 53 0 8 115 2 109 4.27e-37 133
Msa0510820 MtrunA17_Chr5g0434931 50.000 114 57 0 8 121 31 144 1.21e-36 133
Msa0510820 MtrunA17_Chr4g0042611 63.636 88 32 0 1 88 1 88 4.08e-36 126
Msa0510820 MtrunA17_Chr2g0322521 59.615 104 42 0 12 115 29 132 4.46e-36 134
Msa0510820 MtrunA17_Chr4g0030881 50.877 114 49 1 13 119 8 121 4.56e-36 131
Msa0510820 MtrunA17_Chr8g0360111 56.436 101 44 0 12 112 25 125 1.26e-35 130
Msa0510820 MtrunA17_Chr5g0434911 51.818 110 53 0 10 119 19 128 1.97e-35 130
Msa0510820 MtrunA17_Chr7g0220341 46.763 139 55 2 12 148 25 146 7.99e-35 128
Msa0510820 MtrunA17_Chr1g0192411 45.985 137 68 1 11 141 11 147 8.96e-35 131
Msa0510820 MtrunA17_Chr5g0434841 51.818 110 53 0 10 119 18 127 1.36e-34 129
Msa0510820 MtrunA17_Chr7g0228991 50.000 112 56 0 8 119 25 136 2.29e-34 127
Msa0510820 MtrunA17_Chr2g0323321 64.198 81 29 0 12 92 11 91 1.34e-33 120
Msa0510820 MtrunA17_Chr4g0068921 55.556 108 47 1 12 119 24 130 2.51e-33 122
Msa0510820 MtrunA17_Chr5g0440781 50.893 112 53 2 13 123 13 123 4.00e-33 121
Msa0510820 MtrunA17_Chr8g0334881 52.336 107 50 1 9 114 7 113 7.61e-33 124
Msa0510820 MtrunA17_Chr5g0440761 50.893 112 53 2 13 123 13 123 1.73e-32 122
Msa0510820 MtrunA17_Chr5g0441141 50.893 112 53 2 13 123 13 123 1.80e-32 122
Msa0510820 MtrunA17_Chr2g0293911 55.340 103 46 0 12 114 24 126 2.18e-32 123
Msa0510820 MtrunA17_Chr3g0093811 60.920 87 34 0 43 129 13 99 9.84e-32 120
Msa0510820 MtrunA17_Chr5g0441131 50.000 112 54 2 13 123 10 120 4.38e-31 116
Msa0510820 MtrunA17_Chr5g0395221 62.500 80 30 0 9 88 9 88 1.60e-30 111
Msa0510820 MtrunA17_Chr4g0013361 51.923 104 49 1 12 114 10 113 3.36e-30 116
Msa0510820 MtrunA17_Chr2g0294811 59.091 88 36 0 1 88 1 88 2.55e-29 109
Msa0510820 MtrunA17_Chr4g0008551 45.865 133 68 3 14 145 38 167 1.42e-28 113
Msa0510820 MtrunA17_Chr3g0099141 55.422 83 37 0 12 94 40 122 2.63e-28 107
Msa0510820 MtrunA17_Chr5g0401731 46.341 123 63 2 14 135 15 135 4.18e-28 111
Msa0510820 MtrunA17_Chr5g0429661 45.714 105 54 2 12 115 120 222 1.08e-27 111
Msa0510820 MtrunA17_Chr4g0053431 51.961 102 48 1 14 115 5 105 1.44e-27 108
Msa0510820 MtrunA17_Chr7g0238631 50.909 110 51 2 8 116 107 214 1.51e-27 113
Msa0510820 MtrunA17_Chr4g0058991 42.857 112 61 2 9 119 204 313 1.85e-26 109
Msa0510820 MtrunA17_Chr6g0454921 50.485 103 48 2 14 115 15 115 2.48e-26 104
Msa0510820 MtrunA17_Chr7g0229101 61.972 71 27 0 43 113 3 73 7.92e-26 102
Msa0510820 MtrunA17_Chr3g0117511 42.609 115 61 3 8 119 175 287 8.93e-26 107
Msa0510820 MtrunA17_Chr7g0229131 42.424 132 73 2 43 174 3 131 9.60e-26 101
Msa0510820 MtrunA17_Chr3g0139671 47.273 110 55 2 8 116 79 186 1.52e-25 107
Msa0510820 MtrunA17_Chr3g0133601 50.000 102 50 1 14 115 37 137 2.15e-25 102
Msa0510820 MtrunA17_Chr5g0434901 57.746 71 30 0 43 113 4 74 6.29e-25 97.8
Msa0510820 MtrunA17_Chr6g0480581 47.423 97 48 2 14 109 4 98 1.88e-24 100
Msa0510820 MtrunA17_Chr1g0157731 45.455 110 57 2 8 116 85 192 6.16e-24 103
Msa0510820 MtrunA17_Chr6g0453751 52.688 93 35 2 12 95 20 112 6.42e-24 95.5
Msa0510820 MtrunA17_Chr5g0417621 42.727 110 60 2 11 119 131 238 7.25e-24 101
Msa0510820 MtrunA17_Chr4g0042501 43.925 107 57 2 14 119 105 209 8.52e-24 101
Msa0510820 MtrunA17_Chr7g0228531 40.566 106 61 2 14 119 220 323 1.53e-22 97.8
Msa0510820 MtrunA17_Chr6g0460661 44.330 97 51 2 14 109 16 110 2.59e-22 92.0
Msa0510820 MtrunA17_Chr5g0437321 48.000 100 49 2 14 112 19 116 6.56e-22 94.0
Msa0510820 MtrunA17_Chr3g0125801 44.860 107 56 2 14 119 16 120 7.73e-22 94.0
Msa0510820 MtrunA17_Chr5g0425591 47.619 84 43 1 13 95 10 93 1.89e-21 87.4
Msa0510820 MtrunA17_Chr7g0228401 46.667 90 45 2 25 113 290 377 3.09e-21 94.7
Msa0510820 MtrunA17_Chr1g0177901 46.667 90 44 2 24 113 7 92 1.40e-20 88.6
Msa0510820 MtrunA17_Chr7g0254261 38.760 129 74 3 14 141 89 213 7.70e-20 89.4
Msa0510820 MtrunA17_Chr6g0460671 40.777 103 58 2 14 115 99 199 7.83e-20 89.4
Msa0510820 MtrunA17_Chr5g0397841 43.000 100 54 2 12 110 108 205 2.13e-19 89.0
Msa0510820 MtrunA17_Chr7g0238651 32.432 148 89 3 17 153 10 157 1.14e-18 85.9
Msa0510820 MtrunA17_Chr7g0228481 38.182 110 63 3 14 120 220 327 1.79e-18 85.9
Msa0510820 MtrunA17_Chr7g0233061 36.522 115 49 3 14 116 180 282 1.49e-17 82.8
Msa0510820 MtrunA17_Chr5g0395231 61.404 57 22 0 78 134 5 61 1.06e-16 78.6
Msa0510820 MtrunA17_Chr1g0193901 47.191 89 45 2 10 96 9 97 5.03e-15 70.5
Msa0510820 MtrunA17_Chr1g0193891 47.191 89 45 2 10 96 9 97 5.03e-15 70.5
Msa0510820 MtrunA17_Chr1g0193871 47.191 89 45 2 10 96 9 97 5.03e-15 70.5
Msa0510820 MtrunA17_Chr1g0193881 47.191 89 45 2 10 96 9 97 5.03e-15 70.5
Msa0510820 MtrunA17_Chr5g0416341 35.354 99 63 1 17 115 29 126 1.95e-14 73.9
Msa0510820 MtrunA17_Chr8g0362231 33.884 121 78 2 2 122 10 128 1.04e-13 71.6
Msa0510820 MtrunA17_Chr5g0434871 59.091 44 18 0 74 117 2 45 1.41e-13 65.1
Msa0510820 MtrunA17_Chr4g0042621 72.500 40 11 0 89 128 15 54 1.85e-13 70.5
Msa0510820 MtrunA17_Chr3g0145551 68.421 38 12 0 92 129 2 39 2.56e-13 65.1
Msa0510820 MtrunA17_Chr2g0322831 60.976 41 16 0 70 110 34 74 1.01e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0510820 AT5G26660.1 82.576 132 23 0 1 132 1 132 1.39e-78 244
Msa0510820 AT1G57560.2 79.845 129 26 0 1 129 1 129 6.51e-75 233
Msa0510820 AT1G57560.1 79.845 129 26 0 1 129 1 129 6.75e-75 234
Msa0510820 AT4G01680.3 75.000 144 34 2 1 144 1 142 2.53e-74 230
Msa0510820 AT1G09540.1 73.793 145 35 2 1 145 1 142 8.85e-74 233
Msa0510820 AT4G01680.1 75.000 144 34 2 1 144 1 142 2.36e-73 231
Msa0510820 AT4G01680.2 69.231 156 34 3 1 144 1 154 1.34e-69 221
Msa0510820 AT3G13890.2 47.234 235 112 1 1 223 1 235 2.03e-65 211
Msa0510820 AT3G12720.1 71.429 126 35 1 1 126 12 136 5.06e-64 206
Msa0510820 AT3G13890.1 45.492 244 112 2 1 223 1 244 2.44e-62 203
Msa0510820 AT1G63910.1 64.662 133 47 0 1 133 1 133 1.75e-60 198
Msa0510820 AT4G34990.1 65.116 129 45 0 1 129 1 129 5.94e-60 194
Msa0510820 AT1G66230.1 61.111 144 51 1 1 144 1 139 4.88e-59 192
Msa0510820 AT5G65230.1 63.910 133 48 0 1 133 1 133 9.05e-59 192
Msa0510820 AT2G16720.1 64.567 127 45 0 1 127 1 127 1.84e-58 190
Msa0510820 AT3G02940.2 59.701 134 54 0 1 134 1 134 3.73e-58 191
Msa0510820 AT4G12350.1 64.341 129 46 0 1 129 1 129 3.99e-58 190
Msa0510820 AT5G10280.1 64.844 128 45 0 1 128 1 128 5.76e-58 191
Msa0510820 AT4G38620.1 55.629 151 63 1 1 151 1 147 6.35e-58 189
Msa0510820 AT4G21440.1 61.940 134 51 0 1 134 1 134 6.41e-58 191
Msa0510820 AT4G22680.1 60.690 145 56 1 1 145 1 144 6.89e-58 189
Msa0510820 AT4G05100.1 63.566 129 46 1 1 128 1 129 7.10e-58 190
Msa0510820 AT3G02940.1 59.701 134 54 0 1 134 1 134 7.84e-58 190
Msa0510820 AT3G02940.3 59.701 134 54 0 1 134 1 134 7.84e-58 190
Msa0510820 AT3G61250.1 65.116 129 45 0 1 129 1 129 1.34e-57 189
Msa0510820 AT5G15310.4 65.625 128 44 0 1 128 1 128 2.61e-57 186
Msa0510820 AT5G16600.1 65.891 129 44 0 1 129 1 129 3.06e-57 189
Msa0510820 AT5G16770.4 58.824 136 56 0 1 136 1 136 4.09e-57 188
Msa0510820 AT5G16770.3 58.824 136 56 0 1 136 1 136 4.09e-57 188
Msa0510820 AT5G15310.1 65.625 128 44 0 1 128 1 128 6.17e-57 188
Msa0510820 AT3G01140.2 66.142 127 43 0 1 127 1 127 7.21e-57 188
Msa0510820 AT5G15310.2 65.625 128 44 0 1 128 1 128 7.31e-57 187
Msa0510820 AT5G16770.1 58.824 136 56 0 1 136 1 136 8.61e-57 188
Msa0510820 AT5G16770.2 58.824 136 56 0 1 136 1 136 8.61e-57 188
Msa0510820 AT5G54230.1 63.359 131 48 0 1 131 1 131 1.60e-56 187
Msa0510820 AT4G28110.1 60.938 128 50 0 1 128 1 128 1.73e-56 186
Msa0510820 AT5G56110.1 63.566 129 47 0 1 129 1 129 1.77e-56 187
Msa0510820 AT1G22640.1 61.417 127 49 0 1 127 1 127 2.47e-56 184
Msa0510820 AT1G34670.1 63.281 128 47 0 1 128 1 128 4.70e-56 187
Msa0510820 AT4G09460.1 62.205 127 48 0 1 127 1 127 5.90e-56 182
Msa0510820 AT5G12870.1 76.147 109 26 0 10 118 16 124 7.42e-56 184
Msa0510820 AT4G17785.2 58.696 138 56 1 1 137 1 138 9.84e-56 186
Msa0510820 AT4G17785.1 58.696 138 56 1 1 137 1 138 1.15e-55 186
Msa0510820 AT5G14340.1 45.238 210 106 2 1 210 13 213 1.29e-55 183
Msa0510820 AT5G61420.2 54.861 144 65 0 1 144 1 144 3.84e-55 184
Msa0510820 AT3G01140.1 66.393 122 41 0 6 127 49 170 2.15e-54 183
Msa0510820 AT3G08500.1 75.926 108 26 0 9 116 27 134 2.42e-54 182
Msa0510820 AT5G60890.1 52.830 159 70 2 1 159 1 154 3.68e-54 180
Msa0510820 AT1G35515.1 59.231 130 53 0 1 130 1 130 7.72e-54 176
Msa0510820 AT1G74430.1 64.062 128 46 0 1 128 1 128 2.34e-53 177
Msa0510820 AT3G13540.1 61.240 129 49 1 6 133 17 145 2.71e-53 176
Msa0510820 AT5G62320.1 57.778 135 50 1 2 129 3 137 6.75e-53 175
Msa0510820 AT3G28470.1 64.844 128 45 0 1 128 1 128 7.48e-53 177
Msa0510820 AT5G07690.1 58.915 129 53 0 1 129 1 129 8.30e-53 177
Msa0510820 AT2G31180.1 57.447 141 59 1 1 141 1 140 8.82e-53 175
Msa0510820 AT1G18570.1 58.140 129 54 0 6 134 7 135 2.83e-52 177
Msa0510820 AT1G74080.1 58.015 131 55 0 1 131 1 131 9.18e-52 175
Msa0510820 AT5G07700.1 58.268 127 52 1 3 129 4 129 2.02e-51 174
Msa0510820 AT5G07700.2 58.268 127 52 1 3 129 4 129 2.02e-51 174
Msa0510820 AT1G06180.1 66.379 116 39 0 1 116 1 116 1.10e-50 169
Msa0510820 AT1G18710.1 57.143 133 57 0 1 133 1 133 3.54e-50 169
Msa0510820 AT3G48920.1 60.317 126 48 2 9 132 15 140 5.18e-49 166
Msa0510820 AT1G56160.1 64.348 115 41 0 2 116 4 118 1.35e-48 166
Msa0510820 AT3G23250.1 62.069 116 44 0 1 116 1 116 1.38e-48 165
Msa0510820 AT1G79180.1 62.393 117 44 0 2 118 4 120 4.16e-48 164
Msa0510820 AT5G26660.2 81.818 88 16 0 45 132 14 101 5.30e-48 164
Msa0510820 AT4G25560.1 66.055 109 37 0 10 118 8 116 7.91e-48 163
Msa0510820 AT5G52260.1 53.293 167 62 4 9 173 9 161 5.04e-47 160
Msa0510820 AT1G16490.1 61.739 115 44 0 2 116 4 118 2.31e-46 159
Msa0510820 AT3G12820.1 61.538 117 45 0 3 119 5 121 3.06e-46 157
Msa0510820 AT2G47460.1 62.069 116 44 0 1 116 1 116 5.73e-46 160
Msa0510820 AT3G62610.1 61.207 116 45 0 1 116 1 116 1.07e-45 159
Msa0510820 AT5G49330.1 55.224 134 59 1 1 133 1 134 1.34e-45 159
Msa0510820 AT5G57620.1 58.475 118 48 1 1 117 1 118 3.34e-45 157
Msa0510820 AT5G65790.1 58.333 120 49 1 1 119 1 120 3.94e-45 159
Msa0510820 AT5G23000.1 59.322 118 47 1 1 117 1 118 4.48e-45 157
Msa0510820 AT3G49690.1 58.333 120 49 1 1 119 1 120 1.49e-44 155
Msa0510820 AT5G14750.1 60.577 104 41 0 13 116 17 120 4.80e-44 150
Msa0510820 AT5G35550.1 47.458 177 88 3 9 180 11 187 9.53e-44 152
Msa0510820 AT3G47600.1 59.322 118 48 0 1 118 1 118 1.64e-43 153
Msa0510820 AT1G74650.1 59.829 117 47 0 1 117 1 117 3.69e-43 152
Msa0510820 AT5G62470.2 59.322 118 48 0 1 118 1 118 5.12e-43 152
Msa0510820 AT1G08810.1 58.197 122 51 0 1 122 1 122 6.28e-43 150
Msa0510820 AT5G40330.1 59.615 104 42 0 13 116 13 116 9.42e-43 148
Msa0510820 AT2G36890.1 52.756 127 59 1 1 126 1 127 1.54e-42 150
Msa0510820 AT3G27920.1 56.481 108 47 0 10 117 12 119 1.72e-42 147
Msa0510820 AT2G36890.2 52.756 127 59 1 1 126 42 168 2.23e-42 150
Msa0510820 AT3G01530.1 60.000 105 42 0 12 116 25 129 2.56e-42 146
Msa0510820 AT4G37780.1 56.557 122 51 2 1 120 1 122 7.30e-42 148
Msa0510820 AT5G62470.1 59.322 118 47 1 1 118 1 117 3.09e-41 147
Msa0510820 AT5G52600.1 51.145 131 55 1 9 130 9 139 3.24e-41 143
Msa0510820 AT1G79180.2 48.667 150 44 1 2 118 4 153 4.17e-41 147
Msa0510820 AT5G55020.1 60.909 110 42 1 12 121 26 134 4.71e-41 150
Msa0510820 AT5G40350.1 56.364 110 48 0 11 120 16 125 4.90e-41 143
Msa0510820 AT3G24310.1 58.333 108 45 0 8 115 14 121 1.01e-40 144
Msa0510820 AT3G28910.1 57.627 118 50 0 1 118 1 118 1.11e-40 145
Msa0510820 AT4G13480.1 48.000 150 61 2 8 157 2 134 1.26e-40 144
Msa0510820 AT4G26930.1 59.091 110 44 1 12 121 19 127 1.27e-40 147
Msa0510820 AT1G48000.1 45.732 164 71 4 11 172 31 178 7.49e-40 141
Msa0510820 AT3G27810.1 54.054 111 51 0 11 121 19 129 7.69e-40 140
Msa0510820 AT5G06100.1 58.654 104 43 0 12 115 32 135 1.54e-39 145
Msa0510820 AT5G06100.5 58.654 104 43 0 12 115 32 135 5.23e-39 145
Msa0510820 AT5G06100.2 58.654 104 43 0 12 115 32 135 5.23e-39 145
Msa0510820 AT5G06100.3 58.654 104 43 0 12 115 32 135 5.23e-39 145
Msa0510820 AT5G06100.4 58.654 104 43 0 12 115 32 135 5.23e-39 145
Msa0510820 AT2G26960.1 48.227 141 60 2 7 136 15 153 7.05e-39 143
Msa0510820 AT2G32460.2 50.794 126 51 1 8 122 2 127 1.32e-38 143
Msa0510820 AT3G30210.1 60.784 102 40 0 13 114 28 129 1.54e-38 139
Msa0510820 AT2G32460.1 51.613 124 49 1 10 122 16 139 1.63e-38 143
Msa0510820 AT1G68320.1 52.500 120 57 0 10 129 17 136 1.69e-38 139
Msa0510820 AT3G11440.2 55.769 104 46 0 12 115 41 144 2.45e-38 142
Msa0510820 AT1G25340.1 51.613 124 59 1 13 136 19 141 8.82e-38 137
Msa0510820 AT3G11440.3 55.769 104 46 0 12 115 41 144 9.83e-38 142
Msa0510820 AT3G11440.4 55.769 104 46 0 12 115 41 144 9.83e-38 142
Msa0510820 AT3G11440.1 55.769 104 46 0 12 115 41 144 9.83e-38 142
Msa0510820 AT5G59780.3 51.786 112 54 0 8 119 4 115 1.33e-37 135
Msa0510820 AT3G46130.1 53.271 107 50 0 13 119 10 116 8.05e-37 134
Msa0510820 AT1G66370.1 55.769 104 46 0 12 115 8 111 1.28e-35 130
Msa0510820 AT3G53200.1 52.252 111 53 0 9 119 6 116 1.73e-35 129
Msa0510820 AT2G47190.1 50.962 104 51 0 12 115 20 123 4.95e-35 129
Msa0510820 AT3G06490.1 58.252 103 43 0 12 114 19 121 3.15e-34 128
Msa0510820 AT1G66380.1 58.654 104 43 0 12 115 8 111 1.04e-33 122
Msa0510820 AT2G26950.1 45.299 117 63 1 5 121 9 124 2.56e-33 127
Msa0510820 AT3G12820.2 72.222 72 20 0 48 119 2 73 3.63e-33 122
Msa0510820 AT1G56650.1 50.388 129 56 1 12 132 8 136 4.41e-33 123
Msa0510820 AT3G60460.1 51.327 113 54 1 3 114 2 114 4.77e-33 125
Msa0510820 AT1G25340.2 49.194 124 57 2 13 136 19 136 5.77e-33 124
Msa0510820 AT1G25340.3 49.194 124 57 2 13 136 19 136 9.99e-33 124
Msa0510820 AT5G49620.1 55.340 103 46 0 12 114 26 128 3.99e-32 122
Msa0510820 AT1G66390.1 56.604 106 46 0 10 115 6 111 6.67e-32 120
Msa0510820 AT5G35550.2 48.252 143 69 3 43 180 48 190 1.41e-31 120
Msa0510820 AT5G14750.3 69.565 69 21 0 48 116 18 86 3.67e-31 116
Msa0510820 AT5G40350.2 59.211 76 31 0 45 120 5 80 4.12e-29 110
Msa0510820 AT1G18960.1 46.400 125 59 4 6 129 5 122 4.36e-29 114
Msa0510820 AT3G47600.2 54.737 95 39 1 24 118 22 112 1.02e-28 114
Msa0510820 AT5G49620.2 48.718 117 46 1 12 114 26 142 1.72e-28 113
Msa0510820 AT3G27810.2 55.844 77 34 0 45 121 4 80 3.67e-28 108
Msa0510820 AT1G22640.3 62.857 70 26 0 58 127 1 70 5.08e-28 108
Msa0510820 AT3G27785.1 43.966 116 60 3 3 115 176 289 7.24e-28 113
Msa0510820 AT3G46130.3 59.211 76 31 0 44 119 9 84 7.64e-28 108
Msa0510820 AT5G02320.3 34.694 245 130 9 8 233 61 294 1.61e-27 113
Msa0510820 AT5G02320.1 34.694 245 130 9 8 233 121 354 1.65e-27 113
Msa0510820 AT5G02320.2 34.694 245 130 9 8 233 121 354 1.65e-27 113
Msa0510820 AT3G46130.4 60.000 75 30 0 45 119 20 94 2.27e-27 108
Msa0510820 AT5G59780.2 60.000 75 30 0 45 119 20 94 2.68e-27 107
Msa0510820 AT1G71030.2 58.442 77 32 0 51 127 5 81 4.59e-27 105
Msa0510820 AT1G71030.1 58.442 77 32 0 51 127 19 95 7.21e-27 105
Msa0510820 AT4G18770.1 41.322 121 68 2 9 128 212 330 7.63e-27 110
Msa0510820 AT3G09370.2 49.541 109 52 2 8 115 129 235 7.69e-27 111
Msa0510820 AT3G09370.1 49.541 109 52 2 8 115 124 230 8.53e-27 111
Msa0510820 AT3G09370.3 49.541 109 52 2 8 115 137 243 1.40e-26 110
Msa0510820 AT3G53200.2 60.000 75 30 0 45 119 9 83 5.13e-26 103
Msa0510820 AT5G67300.1 49.515 103 49 2 14 115 6 106 6.97e-26 105
Msa0510820 AT2G39880.1 50.467 107 50 2 14 119 50 154 7.27e-26 106
Msa0510820 AT5G58850.1 44.037 109 58 2 12 119 103 209 4.55e-25 105
Msa0510820 AT4G37260.1 49.074 108 52 2 14 120 13 118 4.99e-25 103
Msa0510820 AT5G40360.1 40.566 106 62 1 9 114 153 257 1.04e-24 103
Msa0510820 AT3G50060.1 48.544 103 50 2 14 115 6 106 1.35e-24 102
Msa0510820 AT1G66380.3 59.740 77 31 0 39 115 2 78 1.35e-24 96.7
Msa0510820 AT2G23290.1 51.456 103 47 2 14 115 13 113 1.70e-24 102
Msa0510820 AT5G11510.3 46.364 110 56 2 8 116 75 182 2.04e-24 105
Msa0510820 AT5G11510.1 46.364 110 56 2 8 116 75 182 2.04e-24 105
Msa0510820 AT5G11510.4 46.364 110 56 2 8 116 75 182 2.04e-24 105
Msa0510820 AT1G69560.1 42.105 114 63 2 7 119 100 211 2.04e-24 102
Msa0510820 AT5G11510.2 46.364 110 56 2 8 116 75 182 2.43e-24 104
Msa0510820 AT3G09230.1 48.571 105 51 2 14 117 55 157 2.55e-24 102
Msa0510820 AT1G17950.1 34.483 174 96 5 14 186 5 161 2.58e-24 100
Msa0510820 AT5G11510.5 46.364 110 56 2 8 116 75 182 2.77e-24 104
Msa0510820 AT1G69560.2 42.105 114 63 2 7 119 116 227 3.11e-24 102
Msa0510820 AT5G11050.1 39.516 124 72 2 14 136 105 226 3.32e-24 102
Msa0510820 AT3G55730.1 51.456 103 47 2 14 115 56 156 3.73e-24 102
Msa0510820 AT3G23250.2 69.492 59 18 0 58 116 1 59 8.11e-24 98.2
Msa0510820 AT1G26780.1 43.810 105 56 2 12 115 96 198 2.20e-23 98.2
Msa0510820 AT2G25230.1 39.683 126 70 3 9 133 21 141 3.76e-23 96.7
Msa0510820 AT4G32730.1 44.545 110 58 2 8 116 81 188 3.96e-23 101
Msa0510820 AT4G32730.5 44.545 110 58 2 8 116 81 188 4.23e-23 101
Msa0510820 AT4G32730.4 44.545 110 58 2 8 116 81 188 4.23e-23 101
Msa0510820 AT4G32730.3 44.545 110 58 2 8 116 81 188 4.23e-23 101
Msa0510820 AT4G32730.2 44.545 110 58 2 8 116 81 188 4.23e-23 101
Msa0510820 AT1G26780.2 43.810 105 56 2 12 115 96 198 5.40e-23 98.6
Msa0510820 AT5G14750.4 64.407 59 21 0 58 116 1 59 6.41e-22 90.9
Msa0510820 AT5G14750.2 64.407 59 21 0 58 116 1 59 6.41e-22 90.9
Msa0510820 AT1G73410.1 43.689 103 55 2 14 115 6 106 2.04e-21 92.0
Msa0510820 AT3G29020.1 37.719 114 68 2 7 119 58 169 2.71e-21 91.7
Msa0510820 AT3G29020.2 37.719 114 68 2 7 119 60 171 3.18e-21 92.8
Msa0510820 AT1G73410.2 43.689 103 55 2 14 115 6 106 5.42e-21 90.1
Msa0510820 AT5G17800.1 41.176 102 59 1 14 115 93 193 1.06e-20 91.7
Msa0510820 AT1G66380.2 56.250 80 35 0 10 89 6 85 1.14e-20 86.3
Msa0510820 AT4G33450.1 38.393 112 66 2 5 115 10 119 2.29e-20 89.4
Msa0510820 AT4G00540.2 42.478 113 59 3 8 116 97 207 2.47e-19 88.6
Msa0510820 AT4G00540.1 42.478 113 59 3 8 116 95 205 4.28e-19 88.2
Msa0510820 AT5G61420.1 54.688 64 29 0 81 144 2 65 4.61e-18 83.6
Msa0510820 AT5G40430.1 36.283 113 68 3 9 120 49 158 5.83e-18 82.8
Msa0510820 AT2G37630.1 34.014 147 74 2 17 161 7 132 7.63e-18 84.0
Msa0510820 AT2G02820.3 36.190 105 66 1 17 121 33 136 1.26e-16 80.1
Msa0510820 AT2G02820.1 36.190 105 66 1 17 121 33 136 1.37e-16 80.9
Msa0510820 AT2G02820.2 36.190 105 66 1 17 121 33 136 1.86e-16 80.5
Msa0510820 AT1G14350.2 33.083 133 83 2 17 144 28 159 1.39e-15 77.8
Msa0510820 AT1G14350.1 33.083 133 83 2 17 144 28 159 1.39e-15 77.8
Msa0510820 AT5G39700.1 35.135 111 71 1 9 119 51 160 1.64e-15 74.3
Msa0510820 AT4G25560.2 62.000 50 19 0 69 118 1 50 9.45e-15 72.8
Msa0510820 AT1G74430.2 59.615 52 21 0 77 128 8 59 1.89e-14 71.6
Msa0510820 AT4G28110.2 65.854 41 14 0 88 128 4 44 2.36e-14 71.2
Msa0510820 AT5G15310.3 70.732 41 12 0 88 128 9 49 3.88e-14 71.6
Msa0510820 AT5G14340.2 32.520 123 74 2 88 210 10 123 3.86e-13 67.8
Msa0510820 AT1G22640.2 62.500 40 15 0 88 127 16 55 4.74e-13 67.4
Msa0510820 AT3G46130.2 55.319 47 21 0 73 119 4 50 1.35e-12 66.2
Msa0510820 AT5G59780.1 52.000 50 24 0 70 119 1 50 1.45e-12 65.5
Msa0510820 AT3G18100.1 33.333 96 63 1 13 108 545 639 1.61e-11 66.2
Msa0510820 AT3G18100.3 35.354 99 57 3 13 108 497 591 1.62e-11 65.9
Msa0510820 AT3G18100.4 33.333 96 63 1 13 108 384 478 2.09e-11 65.5
Msa0510820 AT3G18100.2 35.354 99 57 3 13 108 332 426 2.61e-11 65.1
Msa0510820 AT1G74650.3 65.854 41 14 0 77 117 1 41 6.41e-11 62.4
Msa0510820 AT3G28910.2 64.286 42 15 0 77 118 1 42 9.07e-11 62.0

Find 63 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCAAAGGAGAATTAAATT+TGG 0.218847 3_4:+60041046 None:intergenic
AAAAGCTTCTCATCTTCTTC+AGG 0.263770 3_4:+60041982 None:intergenic
TCTTCTGACAGTGACGTTAA+AGG 0.287115 3_4:+60040846 None:intergenic
TTCAATTACATAACCATGTT+TGG 0.314366 3_4:-60041961 Msa0510820:CDS
TAATATTGATTCTCTTATAA+AGG 0.320611 3_4:-60041429 Msa0510820:CDS
ATTAATCACTATAATATTAG+TGG 0.332071 3_4:-60041281 Msa0510820:CDS
GACAGTGGCATTATCATTGA+TGG 0.336941 3_4:+60041392 None:intergenic
ATATTATTACCAGCTAGTTT+AGG 0.367192 3_4:+60041916 None:intergenic
CAATTTGAACAGAACCAGTT+TGG 0.373684 3_4:-60041149 Msa0510820:CDS
TTCCAAATTTAATTCTCCTT+TGG 0.376200 3_4:-60041048 Msa0510820:CDS
TTCATGAAGCACTTGGAAAT+AGG 0.384419 3_4:-60041686 Msa0510820:intron
AGAATCAATATTATTGATGA+AGG 0.405901 3_4:+60041439 None:intergenic
TGCTTGAATTGGTTCCAAAC+TGG 0.411620 3_4:+60041135 None:intergenic
TTTGCTTTAAAGAACAGAAA+TGG 0.411738 3_4:+60042028 None:intergenic
AGAGAAGAAAGTGCTTGAAT+TGG 0.414379 3_4:+60041124 None:intergenic
ATGCAGGTGGATTAATATCA+TGG 0.428131 3_4:-60040953 Msa0510820:CDS
AACATGCCTCTCTTCAAATC+AGG 0.434013 3_4:+60041741 None:intergenic
CCTTGTTGGTGAAACAATGT+AGG 0.437149 3_4:-60040753 Msa0510820:three_prime_UTR
TCATCAACAAGACAAGTTCA+TGG 0.452321 3_4:-60040917 Msa0510820:CDS
TAAGATGGATCAACTATTTG+AGG 0.452664 3_4:-60041764 Msa0510820:CDS
ATGAAGGGTTTATGAGTAGC+TGG 0.469478 3_4:+60041455 None:intergenic
AAAGCTTCTCATCTTCTTCA+GGG 0.470762 3_4:+60041983 None:intergenic
ATCTCATTATCTGTTCTCCC+TGG 0.474483 3_4:+60041533 None:intergenic
CCATGTTTGGTGTTGGCTGT+TGG 0.475716 3_4:-60041948 Msa0510820:CDS
AATTATATGGTGAGGGAAAG+GGG 0.475932 3_4:+60040657 None:intergenic
CAAATTGCAGCACAATTACC+AGG 0.477311 3_4:-60041551 Msa0510820:CDS
TTCTATTGTCCTCACAAACA+TGG 0.477454 3_4:-60042055 Msa0510820:exon
AATTCTTATGAAACCAACAT+TGG 0.495689 3_4:-60041231 Msa0510820:CDS
GAAAGAGTTGTAGATTAAGA+TGG 0.500179 3_4:-60041779 Msa0510820:CDS
TGTTCAAATTGTAATAGACT+TGG 0.511263 3_4:+60041161 None:intergenic
CCTACATTGTTTCACCAACA+AGG 0.512912 3_4:+60040753 None:intergenic
AGTTCAGTTCCTAAACTAGC+TGG 0.517760 3_4:-60041925 Msa0510820:intron
ATCAATCTTCATGAAGCACT+TGG 0.519187 3_4:-60041693 Msa0510820:CDS
TACATAACCATGTTTGGTGT+TGG 0.519759 3_4:-60041955 Msa0510820:CDS
TGTGTAGCTAGAATTCTTTG+AGG 0.524402 3_4:+60041359 None:intergenic
TTCTCTTATAAAGGAAGAGA+AGG 0.526947 3_4:-60041420 Msa0510820:CDS
AATGGATCAAAATCCAATGT+TGG 0.534322 3_4:+60041218 None:intergenic
CTTGAACTTTCATTCACCAA+AGG 0.542251 3_4:+60041032 None:intergenic
ATGCTTAAATTGTAGTACAA+TGG 0.547362 3_4:+60041200 None:intergenic
GAATCAATATTATTGATGAA+GGG 0.548843 3_4:+60041440 None:intergenic
CCAACAGCCAACACCAAACA+TGG 0.550706 3_4:+60041948 None:intergenic
ATTTCAGGGTTGCAAAGGTG+TGG 0.550921 3_4:-60041801 Msa0510820:intron
TTGAGGCCTGATTTGAAGAG+AGG 0.550938 3_4:-60041747 Msa0510820:CDS
AAATTATTTCAGGGTTGCAA+AGG 0.557540 3_4:-60041806 Msa0510820:intron
TGCTTCTGAGTATTCTTGTG+AGG 0.558944 3_4:+60041322 None:intergenic
CTACATTGTTTCACCAACAA+GGG 0.563442 3_4:+60040754 None:intergenic
TCTATTGTCCTCACAAACAT+GGG 0.566388 3_4:-60042054 Msa0510820:exon
TGCAGGTGGATTAATATCAT+GGG 0.569033 3_4:-60040952 Msa0510820:CDS
ATTATATGGTGAGGGAAAGG+GGG 0.574795 3_4:+60040658 None:intergenic
AACATGATTAATGAAAATGC+AGG 0.582343 3_4:-60040969 Msa0510820:CDS
TAGTAAGATGTTGATACCAA+AGG 0.587448 3_4:-60040721 Msa0510820:three_prime_UTR
ATGATTAATGAAAATGCAGG+TGG 0.597024 3_4:-60040966 Msa0510820:CDS
CATTTGATAATAATCACTCA+TGG 0.598608 3_4:+60040995 None:intergenic
AGGCATGTTCTCAAAACAAG+AGG 0.604781 3_4:-60041727 Msa0510820:CDS
AAGCTTCTCATCTTCTTCAG+GGG 0.607980 3_4:+60041984 None:intergenic
AATGGCGACCCATGTTTGTG+AGG 0.614878 3_4:+60042046 None:intergenic
AACTCTGAACTATTTAAACA+AGG 0.617672 3_4:+60041095 None:intergenic
AAGAAGAAACTAATGAAACA+AGG 0.624080 3_4:-60041485 Msa0510820:CDS
AACAAGACAAGTTCATGGCA+AGG 0.635618 3_4:-60040912 Msa0510820:CDS
AGAAGAAACTAATGAAACAA+GGG 0.641105 3_4:-60041484 Msa0510820:CDS
TGAGGTTGAGAGTGAGACAG+TGG 0.658988 3_4:+60041377 None:intergenic
GGTGGATTAATATCATGGGA+AGG 0.674035 3_4:-60040948 Msa0510820:CDS
AAATTGCAGCACAATTACCA+GGG 0.707909 3_4:-60041550 Msa0510820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAATCAAAATTATTTC+AGG - chr3_4:60040939-60040958 Msa0510820:CDS 10.0%
!! TATTAATCAAAATTATTTCA+GGG - chr3_4:60040940-60040959 Msa0510820:CDS 10.0%
!! TTATTAATCAAAATTATTTC+AGG - chr3_4:60040939-60040958 Msa0510820:CDS 10.0%
!! TATTAATCAAAATTATTTCA+GGG - chr3_4:60040940-60040959 Msa0510820:CDS 10.0%
!!! ATAATGAGATAAAAAACTTT+TGG - chr3_4:60041235-60041254 Msa0510820:CDS 15.0%
!!! TAATATTGATTCTCTTATAA+AGG - chr3_4:60041326-60041345 Msa0510820:CDS 15.0%
!! ATTAATCACTATAATATTAG+TGG - chr3_4:60041474-60041493 Msa0510820:CDS 15.0%
!!! ATAATGAGATAAAAAACTTT+TGG - chr3_4:60041235-60041254 Msa0510820:CDS 15.0%
!!! TAATATTGATTCTCTTATAA+AGG - chr3_4:60041326-60041345 Msa0510820:CDS 15.0%
!! ATTAATCACTATAATATTAG+TGG - chr3_4:60041474-60041493 Msa0510820:CDS 15.0%
!! TTAAAGCAAAAACTAAGAAA+AGG - chr3_4:60040740-60040759 Msa0510820:three_prime_UTR 20.0%
!! AAAAACTAAGAAAAGGTTTA+TGG - chr3_4:60040747-60040766 Msa0510820:three_prime_UTR 20.0%
!! GTTGTAAAGTAAAAAAGATA+AGG + chr3_4:60040915-60040934 None:intergenic 20.0%
!! TTAATAATTTCAAATGTCTC+AGG - chr3_4:60041175-60041194 Msa0510820:CDS 20.0%
!! GAATCAATATTATTGATGAA+GGG + chr3_4:60041318-60041337 None:intergenic 20.0%
!! AGAATCAATATTATTGATGA+AGG + chr3_4:60041319-60041338 None:intergenic 20.0%
!! ACAAAAAAACAGTTCATAAA+TGG + chr3_4:60041971-60041990 None:intergenic 20.0%
!! TTAAAGCAAAAACTAAGAAA+AGG - chr3_4:60040740-60040759 Msa0510820:three_prime_UTR 20.0%
!! AAAAACTAAGAAAAGGTTTA+TGG - chr3_4:60040747-60040766 Msa0510820:three_prime_UTR 20.0%
!! GTTGTAAAGTAAAAAAGATA+AGG + chr3_4:60040915-60040934 None:intergenic 20.0%
!! TTAATAATTTCAAATGTCTC+AGG - chr3_4:60041175-60041194 Msa0510820:CDS 20.0%
!! GAATCAATATTATTGATGAA+GGG + chr3_4:60041318-60041337 None:intergenic 20.0%
!! AGAATCAATATTATTGATGA+AGG + chr3_4:60041319-60041338 None:intergenic 20.0%
!! ACAAAAAAACAGTTCATAAA+TGG + chr3_4:60041971-60041990 None:intergenic 20.0%
!!! TTTGCTTTAAAGAACAGAAA+TGG + chr3_4:60040730-60040749 None:intergenic 25.0%
! TTCAATTACATAACCATGTT+TGG - chr3_4:60040794-60040813 Msa0510820:exon 25.0%
!! ATATTATTACCAGCTAGTTT+AGG + chr3_4:60040842-60040861 None:intergenic 25.0%
! AAGAAGAAACTAATGAAACA+AGG - chr3_4:60041270-60041289 Msa0510820:CDS 25.0%
! AGAAGAAACTAATGAAACAA+GGG - chr3_4:60041271-60041290 Msa0510820:CDS 25.0%
! AATTCTTATGAAACCAACAT+TGG - chr3_4:60041524-60041543 Msa0510820:CDS 25.0%
! ATGCTTAAATTGTAGTACAA+TGG + chr3_4:60041558-60041577 None:intergenic 25.0%
! TGTTCAAATTGTAATAGACT+TGG + chr3_4:60041597-60041616 None:intergenic 25.0%
! AACTCTGAACTATTTAAACA+AGG + chr3_4:60041663-60041682 None:intergenic 25.0%
! TTCCAAATTTAATTCTCCTT+TGG - chr3_4:60041707-60041726 Msa0510820:CDS 25.0%
!! CATTTGATAATAATCACTCA+TGG + chr3_4:60041763-60041782 None:intergenic 25.0%
! AACATGATTAATGAAAATGC+AGG - chr3_4:60041786-60041805 Msa0510820:CDS 25.0%
!!! TTTGCTTTAAAGAACAGAAA+TGG + chr3_4:60040730-60040749 None:intergenic 25.0%
! TTCAATTACATAACCATGTT+TGG - chr3_4:60040794-60040813 Msa0510820:exon 25.0%
!! ATATTATTACCAGCTAGTTT+AGG + chr3_4:60040842-60040861 None:intergenic 25.0%
! AAGAAGAAACTAATGAAACA+AGG - chr3_4:60041270-60041289 Msa0510820:CDS 25.0%
! AGAAGAAACTAATGAAACAA+GGG - chr3_4:60041271-60041290 Msa0510820:CDS 25.0%
! AATTCTTATGAAACCAACAT+TGG - chr3_4:60041524-60041543 Msa0510820:CDS 25.0%
! ATGCTTAAATTGTAGTACAA+TGG + chr3_4:60041558-60041577 None:intergenic 25.0%
! TGTTCAAATTGTAATAGACT+TGG + chr3_4:60041597-60041616 None:intergenic 25.0%
! AACTCTGAACTATTTAAACA+AGG + chr3_4:60041663-60041682 None:intergenic 25.0%
! TTCCAAATTTAATTCTCCTT+TGG - chr3_4:60041707-60041726 Msa0510820:CDS 25.0%
!! CATTTGATAATAATCACTCA+TGG + chr3_4:60041763-60041782 None:intergenic 25.0%
! AACATGATTAATGAAAATGC+AGG - chr3_4:60041786-60041805 Msa0510820:CDS 25.0%
CAATAGAAAAAAGGACACAA+AGG + chr3_4:60040688-60040707 None:intergenic 30.0%
TTGTGAGGACAATAGAAAAA+AGG + chr3_4:60040697-60040716 None:intergenic 30.0%
AAATTATTTCAGGGTTGCAA+AGG - chr3_4:60040949-60040968 Msa0510820:CDS 30.0%
GAAAGAGTTGTAGATTAAGA+TGG - chr3_4:60040976-60040995 Msa0510820:CDS 30.0%
TAAGATGGATCAACTATTTG+AGG - chr3_4:60040991-60041010 Msa0510820:CDS 30.0%
ATAATTTCAAATGTCTCAGG+TGG - chr3_4:60041178-60041197 Msa0510820:CDS 30.0%
TAATTTCAAATGTCTCAGGT+GGG - chr3_4:60041179-60041198 Msa0510820:CDS 30.0%
TTCTCTTATAAAGGAAGAGA+AGG - chr3_4:60041335-60041354 Msa0510820:CDS 30.0%
AATGGATCAAAATCCAATGT+TGG + chr3_4:60041540-60041559 None:intergenic 30.0%
CACCAAAGGAGAATTAAATT+TGG + chr3_4:60041712-60041731 None:intergenic 30.0%
ATGATTAATGAAAATGCAGG+TGG - chr3_4:60041789-60041808 Msa0510820:CDS 30.0%
TAGTAAGATGTTGATACCAA+AGG - chr3_4:60042034-60042053 Msa0510820:CDS 30.0%
! CTTTTGCTAGAAATTTCCTT+TGG + chr3_4:60042053-60042072 None:intergenic 30.0%
CAATAGAAAAAAGGACACAA+AGG + chr3_4:60040688-60040707 None:intergenic 30.0%
TTGTGAGGACAATAGAAAAA+AGG + chr3_4:60040697-60040716 None:intergenic 30.0%
AAATTATTTCAGGGTTGCAA+AGG - chr3_4:60040949-60040968 Msa0510820:CDS 30.0%
GAAAGAGTTGTAGATTAAGA+TGG - chr3_4:60040976-60040995 Msa0510820:CDS 30.0%
TAAGATGGATCAACTATTTG+AGG - chr3_4:60040991-60041010 Msa0510820:CDS 30.0%
ATAATTTCAAATGTCTCAGG+TGG - chr3_4:60041178-60041197 Msa0510820:CDS 30.0%
TAATTTCAAATGTCTCAGGT+GGG - chr3_4:60041179-60041198 Msa0510820:CDS 30.0%
TTCTCTTATAAAGGAAGAGA+AGG - chr3_4:60041335-60041354 Msa0510820:CDS 30.0%
AATGGATCAAAATCCAATGT+TGG + chr3_4:60041540-60041559 None:intergenic 30.0%
CACCAAAGGAGAATTAAATT+TGG + chr3_4:60041712-60041731 None:intergenic 30.0%
ATGATTAATGAAAATGCAGG+TGG - chr3_4:60041789-60041808 Msa0510820:CDS 30.0%
TAGTAAGATGTTGATACCAA+AGG - chr3_4:60042034-60042053 Msa0510820:CDS 30.0%
! CTTTTGCTAGAAATTTCCTT+TGG + chr3_4:60042053-60042072 None:intergenic 30.0%
TTCTATTGTCCTCACAAACA+TGG - chr3_4:60040700-60040719 Msa0510820:three_prime_UTR 35.0%
TCTATTGTCCTCACAAACAT+GGG - chr3_4:60040701-60040720 Msa0510820:three_prime_UTR 35.0%
AAAGCTTCTCATCTTCTTCA+GGG + chr3_4:60040775-60040794 None:intergenic 35.0%
AAAAGCTTCTCATCTTCTTC+AGG + chr3_4:60040776-60040795 None:intergenic 35.0%
!! TACATAACCATGTTTGGTGT+TGG - chr3_4:60040800-60040819 Msa0510820:CDS 35.0%
! ATCAATCTTCATGAAGCACT+TGG - chr3_4:60041062-60041081 Msa0510820:CDS 35.0%
! TTCATGAAGCACTTGGAAAT+AGG - chr3_4:60041069-60041088 Msa0510820:CDS 35.0%
AAATTGCAGCACAATTACCA+GGG - chr3_4:60041205-60041224 Msa0510820:CDS 35.0%
TGTGTAGCTAGAATTCTTTG+AGG + chr3_4:60041399-60041418 None:intergenic 35.0%
CAATTTGAACAGAACCAGTT+TGG - chr3_4:60041606-60041625 Msa0510820:intron 35.0%
!! AGAGAAGAAAGTGCTTGAAT+TGG + chr3_4:60041634-60041653 None:intergenic 35.0%
CTTGAACTTTCATTCACCAA+AGG + chr3_4:60041726-60041745 None:intergenic 35.0%
!! ATGCAGGTGGATTAATATCA+TGG - chr3_4:60041802-60041821 Msa0510820:intron 35.0%
!! TGCAGGTGGATTAATATCAT+GGG - chr3_4:60041803-60041822 Msa0510820:intron 35.0%
TCATCAACAAGACAAGTTCA+TGG - chr3_4:60041838-60041857 Msa0510820:intron 35.0%
CTACATTGTTTCACCAACAA+GGG + chr3_4:60042004-60042023 None:intergenic 35.0%
TTCTATTGTCCTCACAAACA+TGG - chr3_4:60040700-60040719 Msa0510820:three_prime_UTR 35.0%
TCTATTGTCCTCACAAACAT+GGG - chr3_4:60040701-60040720 Msa0510820:three_prime_UTR 35.0%
AAAGCTTCTCATCTTCTTCA+GGG + chr3_4:60040775-60040794 None:intergenic 35.0%
AAAAGCTTCTCATCTTCTTC+AGG + chr3_4:60040776-60040795 None:intergenic 35.0%
!! TACATAACCATGTTTGGTGT+TGG - chr3_4:60040800-60040819 Msa0510820:CDS 35.0%
! ATCAATCTTCATGAAGCACT+TGG - chr3_4:60041062-60041081 Msa0510820:CDS 35.0%
! TTCATGAAGCACTTGGAAAT+AGG - chr3_4:60041069-60041088 Msa0510820:CDS 35.0%
AAATTGCAGCACAATTACCA+GGG - chr3_4:60041205-60041224 Msa0510820:CDS 35.0%
TGTGTAGCTAGAATTCTTTG+AGG + chr3_4:60041399-60041418 None:intergenic 35.0%
CAATTTGAACAGAACCAGTT+TGG - chr3_4:60041606-60041625 Msa0510820:intron 35.0%
!! AGAGAAGAAAGTGCTTGAAT+TGG + chr3_4:60041634-60041653 None:intergenic 35.0%
CTTGAACTTTCATTCACCAA+AGG + chr3_4:60041726-60041745 None:intergenic 35.0%
!! ATGCAGGTGGATTAATATCA+TGG - chr3_4:60041802-60041821 Msa0510820:intron 35.0%
!! TGCAGGTGGATTAATATCAT+GGG - chr3_4:60041803-60041822 Msa0510820:intron 35.0%
TCATCAACAAGACAAGTTCA+TGG - chr3_4:60041838-60041857 Msa0510820:intron 35.0%
CTACATTGTTTCACCAACAA+GGG + chr3_4:60042004-60042023 None:intergenic 35.0%
AAGCTTCTCATCTTCTTCAG+GGG + chr3_4:60040774-60040793 None:intergenic 40.0%
AGTTCAGTTCCTAAACTAGC+TGG - chr3_4:60040830-60040849 Msa0510820:CDS 40.0%
AACATGCCTCTCTTCAAATC+AGG + chr3_4:60041017-60041036 None:intergenic 40.0%
AGGCATGTTCTCAAAACAAG+AGG - chr3_4:60041028-60041047 Msa0510820:CDS 40.0%
CAAATTGCAGCACAATTACC+AGG - chr3_4:60041204-60041223 Msa0510820:CDS 40.0%
ATCTCATTATCTGTTCTCCC+TGG + chr3_4:60041225-60041244 None:intergenic 40.0%
ATGAAGGGTTTATGAGTAGC+TGG + chr3_4:60041303-60041322 None:intergenic 40.0%
GACAGTGGCATTATCATTGA+TGG + chr3_4:60041366-60041385 None:intergenic 40.0%
TGCTTCTGAGTATTCTTGTG+AGG + chr3_4:60041436-60041455 None:intergenic 40.0%
! TGCTTGAATTGGTTCCAAAC+TGG + chr3_4:60041623-60041642 None:intergenic 40.0%
!! GGTGGATTAATATCATGGGA+AGG - chr3_4:60041807-60041826 Msa0510820:intron 40.0%
AACAAGACAAGTTCATGGCA+AGG - chr3_4:60041843-60041862 Msa0510820:intron 40.0%
TCTTCTGACAGTGACGTTAA+AGG + chr3_4:60041912-60041931 None:intergenic 40.0%
! TGTTGAGTGTTTTCCCTTGT+TGG - chr3_4:60041988-60042007 Msa0510820:CDS 40.0%
CCTACATTGTTTCACCAACA+AGG + chr3_4:60042005-60042024 None:intergenic 40.0%
! CCTTGTTGGTGAAACAATGT+AGG - chr3_4:60042002-60042021 Msa0510820:CDS 40.0%
AAGCTTCTCATCTTCTTCAG+GGG + chr3_4:60040774-60040793 None:intergenic 40.0%
AGTTCAGTTCCTAAACTAGC+TGG - chr3_4:60040830-60040849 Msa0510820:CDS 40.0%
AACATGCCTCTCTTCAAATC+AGG + chr3_4:60041017-60041036 None:intergenic 40.0%
AGGCATGTTCTCAAAACAAG+AGG - chr3_4:60041028-60041047 Msa0510820:CDS 40.0%
CAAATTGCAGCACAATTACC+AGG - chr3_4:60041204-60041223 Msa0510820:CDS 40.0%
ATCTCATTATCTGTTCTCCC+TGG + chr3_4:60041225-60041244 None:intergenic 40.0%
ATGAAGGGTTTATGAGTAGC+TGG + chr3_4:60041303-60041322 None:intergenic 40.0%
GACAGTGGCATTATCATTGA+TGG + chr3_4:60041366-60041385 None:intergenic 40.0%
TGCTTCTGAGTATTCTTGTG+AGG + chr3_4:60041436-60041455 None:intergenic 40.0%
! TGCTTGAATTGGTTCCAAAC+TGG + chr3_4:60041623-60041642 None:intergenic 40.0%
!! GGTGGATTAATATCATGGGA+AGG - chr3_4:60041807-60041826 Msa0510820:intron 40.0%
AACAAGACAAGTTCATGGCA+AGG - chr3_4:60041843-60041862 Msa0510820:intron 40.0%
TCTTCTGACAGTGACGTTAA+AGG + chr3_4:60041912-60041931 None:intergenic 40.0%
! TGTTGAGTGTTTTCCCTTGT+TGG - chr3_4:60041988-60042007 Msa0510820:CDS 40.0%
CCTACATTGTTTCACCAACA+AGG + chr3_4:60042005-60042024 None:intergenic 40.0%
! CCTTGTTGGTGAAACAATGT+AGG - chr3_4:60042002-60042021 Msa0510820:CDS 40.0%
ATTTCAGGGTTGCAAAGGTG+TGG - chr3_4:60040954-60040973 Msa0510820:CDS 45.0%
! TTGAGGCCTGATTTGAAGAG+AGG - chr3_4:60041008-60041027 Msa0510820:CDS 45.0%
ATTTCAGGGTTGCAAAGGTG+TGG - chr3_4:60040954-60040973 Msa0510820:CDS 45.0%
! TTGAGGCCTGATTTGAAGAG+AGG - chr3_4:60041008-60041027 Msa0510820:CDS 45.0%
AATGGCGACCCATGTTTGTG+AGG + chr3_4:60040712-60040731 None:intergenic 50.0%
CCAACAGCCAACACCAAACA+TGG + chr3_4:60040810-60040829 None:intergenic 50.0%
!! CCATGTTTGGTGTTGGCTGT+TGG - chr3_4:60040807-60040826 Msa0510820:CDS 50.0%
TGAGGTTGAGAGTGAGACAG+TGG + chr3_4:60041381-60041400 None:intergenic 50.0%
AATGGCGACCCATGTTTGTG+AGG + chr3_4:60040712-60040731 None:intergenic 50.0%
CCAACAGCCAACACCAAACA+TGG + chr3_4:60040810-60040829 None:intergenic 50.0%
!! CCATGTTTGGTGTTGGCTGT+TGG - chr3_4:60040807-60040826 Msa0510820:CDS 50.0%
TGAGGTTGAGAGTGAGACAG+TGG + chr3_4:60041381-60041400 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 60040672 60042105 60040672 ID=Msa0510820;Name=Msa0510820
chr3_4 mRNA 60040672 60042105 60040672 ID=Msa0510820-mRNA-1;Parent=Msa0510820;Name=Msa0510820-mRNA-1;_AED=0.05;_eAED=0.05;_QI=47|1|1|1|1|1|3|128|347
chr3_4 exon 60040672 60041580 60040672 ID=Msa0510820-mRNA-1:exon:14261;Parent=Msa0510820-mRNA-1
chr3_4 exon 60041687 60041816 60041687 ID=Msa0510820-mRNA-1:exon:14260;Parent=Msa0510820-mRNA-1
chr3_4 exon 60041926 60042105 60041926 ID=Msa0510820-mRNA-1:exon:14259;Parent=Msa0510820-mRNA-1
chr3_4 five_prime_UTR 60042059 60042105 60042059 ID=Msa0510820-mRNA-1:five_prime_utr;Parent=Msa0510820-mRNA-1
chr3_4 CDS 60041926 60042058 60041926 ID=Msa0510820-mRNA-1:cds;Parent=Msa0510820-mRNA-1
chr3_4 CDS 60041687 60041816 60041687 ID=Msa0510820-mRNA-1:cds;Parent=Msa0510820-mRNA-1
chr3_4 CDS 60040800 60041580 60040800 ID=Msa0510820-mRNA-1:cds;Parent=Msa0510820-mRNA-1
chr3_4 three_prime_UTR 60040672 60040799 60040672 ID=Msa0510820-mRNA-1:three_prime_utr;Parent=Msa0510820-mRNA-1
Gene Sequence

>Msa0510820

ATGGGTCGCCATTTCTGTTCTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTTTTCAATTACATAACCATGTTTGGTGTTGGCTGTTGGAGTTCAGTTCCTAAACTAGCTGGGTTGCAAAGGTGTGGAAAGAGTTGTAGATTAAGATGGATCAACTATTTGAGGCCTGATTTGAAGAGAGGCATGTTCTCAAAACAAGAGGAAGATCTTATTATCAATCTTCATGAAGCACTTGGAAATAGGTGGGCTCAAATTGCAGCACAATTACCAGGGAGAACAGATAATGAGATAAAAAACTTTTGGAATTCAAGTTTGAAGAAGAAACTAATGAAACAAGGGATTGATCCAGCTACTCATAAACCCTTCATCAATAATATTGATTCTCTTATAAAGGAAGAGAAGGAAAAACCATCAATGATAATGCCACTGTCTCACTCTCAACCTCAAAGAATTCTAGCTACACACACAATGCTAGAATCCTCACAAGAATACTCAGAAGCACTTCTAATGAGTGATTTGATTAATCACTATAATATTAGTGGATTAGCTTTAACAGAAGCTTCAAGAAAAATTCTTATGAAACCAACATTGGATTTTGATCCATTGTACTACAATTTAAGCATGAACAATTATTATCAGCCAAGTCTATTACAATTTGAACAGAACCAGTTTGGAACCAATTCAAGCACTTTCTTCTCTTCAATGCCTTGTTTAAATAGTTCAGAGTTTTCAGACAATATCAACAACTCAGTTTCCAAATTTAATTCTCCTTTGGTGAATGAAAGTTCAAGCAATAGTACTTCAACCATGAGTGATTATTATCAAATGAGCAACATGATTAATGAAAATGCAGGTGGATTAATATCATGGGAAGGTGAAGAATTCATCAACAAGACAAGTTCATGGCAAGGACAGATGCTGAGTCATAATAATTCAATAGATTTCAGTACATATCCTTTAACGTCACTGTCAGAAGATCTAAGTAATATTGAAGCTAATTTTGATGTATTTCACCATTTATGA
Protein sequence

>Msa0510820

MGRHFCSLKQKLRKGLWSPEEDEKLFNYITMFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSKQEEDLIINLHEALGNRWAQIAAQLPGRTDNEIKNFWNSSLKKKLMKQGIDPATHKPFINNIDSLIKEEKEKPSMIMPLSHSQPQRILATHTMLESSQEYSEALLMSDLINHYNISGLALTEASRKILMKPTLDFDPLYYNLSMNNYYQPSLLQFEQNQFGTNSSTFFSSMPCLNSSEFSDNINNSVSKFNSPLVNESSSNSTSTMSDYYQMSNMINENAGGLISWEGEEFINKTSSWQGQMLSHNNSIDFSTYPLTSLSEDLSNIEANFDVFHHL*