Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512690 | XP_013461146.1 | 92.593 | 189 | 14 | 0 | 1 | 189 | 1 | 189 | 1.80e-126 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512690 | sp|Q75LL6|TADA2_ORYSJ | 68.217 | 129 | 41 | 0 | 49 | 177 | 53 | 181 | 2.71e-62 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512690 | A0A072VAF9 | 92.593 | 189 | 14 | 0 | 1 | 189 | 1 | 189 | 8.59e-127 | 363 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0512690 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512690 | MtrunA17_Chr3g0120221 | 92.593 | 189 | 14 | 0 | 1 | 189 | 1 | 189 | 1.65e-130 | 363 |
| Msa0512690 | MtrunA17_Chr3g0120841 | 71.765 | 170 | 44 | 3 | 16 | 183 | 21 | 188 | 1.07e-75 | 237 |
| Msa0512690 | MtrunA17_Chr2g0290321 | 55.882 | 170 | 71 | 3 | 16 | 184 | 19 | 185 | 1.21e-58 | 192 |
| Msa0512690 | MtrunA17_Chr7g0239471 | 57.714 | 175 | 70 | 2 | 16 | 188 | 18 | 190 | 2.16e-58 | 190 |
| Msa0512690 | MtrunA17_Chr2g0290341 | 61.429 | 140 | 52 | 1 | 39 | 178 | 26 | 163 | 8.96e-58 | 189 |
| Msa0512690 | MtrunA17_Chr3g0120191 | 79.487 | 78 | 16 | 0 | 107 | 184 | 11 | 88 | 1.98e-40 | 133 |
| Msa0512690 | MtrunA17_Chr3g0120181 | 73.770 | 61 | 14 | 1 | 35 | 95 | 1 | 59 | 1.48e-26 | 96.3 |
| Msa0512690 | MtrunA17_Chr7g0238851 | 51.899 | 79 | 36 | 1 | 17 | 95 | 5 | 81 | 2.39e-19 | 79.0 |
| Msa0512690 | MtrunA17_Chr3g0124951 | 44.304 | 79 | 42 | 2 | 69 | 146 | 358 | 435 | 2.30e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512690 | AT4G16420.1 | 55.828 | 163 | 68 | 1 | 16 | 178 | 18 | 176 | 3.07e-62 | 200 |
| Msa0512690 | AT4G16420.2 | 55.828 | 163 | 68 | 1 | 16 | 178 | 18 | 176 | 3.19e-62 | 200 |
| Msa0512690 | AT4G16420.3 | 55.828 | 163 | 68 | 1 | 16 | 178 | 18 | 176 | 3.52e-62 | 200 |
| Msa0512690 | AT3G07740.1 | 53.672 | 177 | 73 | 5 | 6 | 182 | 19 | 186 | 1.27e-54 | 182 |
| Msa0512690 | AT3G07740.3 | 60.448 | 134 | 53 | 0 | 49 | 182 | 32 | 165 | 4.55e-54 | 180 |
| Msa0512690 | AT3G07740.4 | 51.630 | 184 | 73 | 6 | 6 | 182 | 19 | 193 | 5.64e-52 | 175 |
| Msa0512690 | AT3G07740.2 | 60.526 | 114 | 45 | 0 | 69 | 182 | 2 | 115 | 1.46e-44 | 154 |
Find 40 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTGCAAAATTGATATTTC+AGG | 0.197023 | 3_4:-62591626 | Msa0512690:CDS |
| TTTCATACCATAACCCGATA+TGG | 0.348409 | 3_4:+62591506 | None:intergenic |
| ACATGTATGGATTTGAGAAT+TGG | 0.349491 | 3_4:-62590894 | Msa0512690:CDS |
| ATAAAAGCAATCATCCATAT+CGG | 0.394474 | 3_4:-62591520 | Msa0512690:CDS |
| TCTTCATGCGCACTCCAATC+TGG | 0.395273 | 3_4:+62591059 | None:intergenic |
| TTATAGTGGTCAATACATTC+AGG | 0.410127 | 3_4:+62590835 | None:intergenic |
| TAATGCAGGGGATAAAGCTT+TGG | 0.419580 | 3_4:-62590275 | Msa0512690:intron |
| GAGAAATGGGTCACAAGAAC+AGG | 0.421891 | 3_4:-62592009 | None:intergenic |
| CAATCATCCATATCGGGTTA+TGG | 0.423979 | 3_4:-62591513 | Msa0512690:intron |
| ACTGCAAAATTGATATTTCA+GGG | 0.454131 | 3_4:-62591625 | Msa0512690:CDS |
| TTCCGCTTACATGTCCAGAT+TGG | 0.474697 | 3_4:-62591073 | Msa0512690:CDS |
| GAGTTGATCTCCCTTTCCCA+TGG | 0.497705 | 3_4:+62590649 | None:intergenic |
| GAACTCCGTGCCATGGGAAA+GGG | 0.510817 | 3_4:-62590659 | Msa0512690:CDS |
| TAAAAGCAATCATCCATATC+GGG | 0.518323 | 3_4:-62591519 | Msa0512690:CDS |
| TCTCAAATCCATACATGTCA+AGG | 0.519033 | 3_4:+62590899 | None:intergenic |
| TGAAGAGAGGTTACTTCTTG+AGG | 0.519406 | 3_4:-62591042 | Msa0512690:intron |
| TCAAATAGACTTACAGGAAG+AGG | 0.528922 | 3_4:+62590784 | None:intergenic |
| GGAACTCCGTGCCATGGGAA+AGG | 0.529053 | 3_4:-62590660 | Msa0512690:CDS |
| CAAAGAGGAACTCCGTGCCA+TGG | 0.534697 | 3_4:-62590666 | Msa0512690:CDS |
| AATGGTGTTGCTGAACATGT+TGG | 0.537081 | 3_4:-62590871 | Msa0512690:CDS |
| ATGGTGTTGCTGAACATGTT+GGG | 0.537981 | 3_4:-62590870 | Msa0512690:CDS |
| CAAAATTGATATTTCAGGGA+AGG | 0.550461 | 3_4:-62591621 | Msa0512690:CDS |
| GATCTCCCTTTCCCATGGCA+CGG | 0.560127 | 3_4:+62590654 | None:intergenic |
| AAAGAGGAACTCCGTGCCAT+GGG | 0.560848 | 3_4:-62590665 | Msa0512690:CDS |
| AAGGGAGATCAACTCAAGAA+AGG | 0.572505 | 3_4:-62590641 | Msa0512690:intron |
| GTAGGATTTGTCTTATTGCG+AGG | 0.577492 | 3_4:-62590696 | Msa0512690:intron |
| TAGGATTTGTCTTATTGCGA+GGG | 0.578285 | 3_4:-62590695 | Msa0512690:CDS |
| TCAGATATACCACATTATAG+TGG | 0.585833 | 3_4:+62590821 | None:intergenic |
| AAGGCTGTTAATAATGCTGA+GGG | 0.591116 | 3_4:-62591832 | Msa0512690:CDS |
| CATGGAAGTCACTGATGGCA+AGG | 0.592151 | 3_4:-62591675 | Msa0512690:CDS |
| AAAGGCTGTTAATAATGCTG+AGG | 0.597321 | 3_4:-62591833 | Msa0512690:CDS |
| TATGGATTTGAGAATTGGAA+TGG | 0.599113 | 3_4:-62590889 | Msa0512690:CDS |
| CTCAAATCCATACATGTCAA+GGG | 0.602788 | 3_4:+62590900 | None:intergenic |
| ATTGGAGTGCGCATGAAGAG+AGG | 0.617745 | 3_4:-62591055 | Msa0512690:CDS |
| CTTACAGGAAGAGGAGCACA+TGG | 0.648202 | 3_4:+62590793 | None:intergenic |
| CTCCAATCTGGACATGTAAG+CGG | 0.649769 | 3_4:+62591071 | None:intergenic |
| TTGCGAGGGGAAGAACAAAG+AGG | 0.681299 | 3_4:-62590681 | Msa0512690:CDS |
| GTAGGCATGGAAGTCACTGA+TGG | 0.694328 | 3_4:-62591680 | Msa0512690:intron |
| AGGATTTGTCTTATTGCGAG+GGG | 0.694535 | 3_4:-62590694 | Msa0512690:CDS |
| ATGTATTGACCACTATAATG+TGG | 0.749035 | 3_4:-62590830 | Msa0512690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTAATTTTTTATTTTAC+AGG | - | chr3_4:62591166-62591185 | Msa0512690:intron | 10.0% |
| !!! | GTTTTAATTTTTTATTTTAC+AGG | - | chr3_4:62591166-62591185 | Msa0512690:intron | 10.0% |
| !! | AACAATAATGTGTTAATTAA+AGG | + | chr3_4:62590523-62590542 | None:intergenic | 15.0% |
| !! | TGTTATGATAAAATCAAATA+AGG | + | chr3_4:62591336-62591355 | None:intergenic | 15.0% |
| !! | AACAATAATGTGTTAATTAA+AGG | + | chr3_4:62590523-62590542 | None:intergenic | 15.0% |
| !! | TGTTATGATAAAATCAAATA+AGG | + | chr3_4:62591336-62591355 | None:intergenic | 15.0% |
| !! | GGTATTACGTAATATAATAA+CGG | + | chr3_4:62590560-62590579 | None:intergenic | 20.0% |
| !! | CACAATATTTAAGAAAAAAC+AGG | + | chr3_4:62590810-62590829 | None:intergenic | 20.0% |
| !!! | TAGTGAAAAGTATTTTTCAA+GGG | + | chr3_4:62590865-62590884 | None:intergenic | 20.0% |
| !!! | TTAGTGAAAAGTATTTTTCA+AGG | + | chr3_4:62590866-62590885 | None:intergenic | 20.0% |
| !!! | AAAAAAAAATTGGTTTCGTT+TGG | + | chr3_4:62591777-62591796 | None:intergenic | 20.0% |
| !! | TATTTGTAGAAATACCAAAT+AGG | - | chr3_4:62591820-62591839 | Msa0512690:CDS | 20.0% |
| !! | CCAATTAGATACTAAAATAA+AGG | + | chr3_4:62591964-62591983 | None:intergenic | 20.0% |
| !!! | CCTTTATTTTAGTATCTAAT+TGG | - | chr3_4:62591961-62591980 | Msa0512690:intron | 20.0% |
| !! | GGTATTACGTAATATAATAA+CGG | + | chr3_4:62590560-62590579 | None:intergenic | 20.0% |
| !! | CACAATATTTAAGAAAAAAC+AGG | + | chr3_4:62590810-62590829 | None:intergenic | 20.0% |
| !!! | TAGTGAAAAGTATTTTTCAA+GGG | + | chr3_4:62590865-62590884 | None:intergenic | 20.0% |
| !!! | TTAGTGAAAAGTATTTTTCA+AGG | + | chr3_4:62590866-62590885 | None:intergenic | 20.0% |
| !!! | AAAAAAAAATTGGTTTCGTT+TGG | + | chr3_4:62591777-62591796 | None:intergenic | 20.0% |
| !! | TATTTGTAGAAATACCAAAT+AGG | - | chr3_4:62591820-62591839 | Msa0512690:CDS | 20.0% |
| !! | CCAATTAGATACTAAAATAA+AGG | + | chr3_4:62591964-62591983 | None:intergenic | 20.0% |
| !!! | CCTTTATTTTAGTATCTAAT+TGG | - | chr3_4:62591961-62591980 | Msa0512690:intron | 20.0% |
| !!! | AAAAGCAGTACTTTTTTTCT+TGG | + | chr3_4:62590407-62590426 | None:intergenic | 25.0% |
| !!! | AAGAAAAAAAGTACTGCTTT+TGG | - | chr3_4:62590406-62590425 | Msa0512690:intron | 25.0% |
| !! | TTTTGGATCCAAGAAAAAAA+AGG | - | chr3_4:62590423-62590442 | Msa0512690:intron | 25.0% |
| !!! | ATTAACAGCCTTTTTTTTCT+TGG | + | chr3_4:62590434-62590453 | None:intergenic | 25.0% |
| !! | GTAATACCATTTTCTAAATG+TGG | - | chr3_4:62590572-62590591 | Msa0512690:intron | 25.0% |
| ! | TACTGCAAAATTGATATTTC+AGG | - | chr3_4:62590648-62590667 | Msa0512690:CDS | 25.0% |
| ! | ACTGCAAAATTGATATTTCA+GGG | - | chr3_4:62590649-62590668 | Msa0512690:CDS | 25.0% |
| ! | ATAAAAGCAATCATCCATAT+CGG | - | chr3_4:62590754-62590773 | Msa0512690:intron | 25.0% |
| ! | CTTTATATTTCTTCCCATTA+TGG | - | chr3_4:62591007-62591026 | Msa0512690:intron | 25.0% |
| !!! | CGAAACCAATTTTTTTTTAG+AGG | - | chr3_4:62591779-62591798 | Msa0512690:intron | 25.0% |
| !!! | AACCAATTTTTTTTTAGAGG+TGG | - | chr3_4:62591782-62591801 | Msa0512690:intron | 25.0% |
| ! | ATACCAAATAGGTGAAAATT+AGG | - | chr3_4:62591831-62591850 | Msa0512690:CDS | 25.0% |
| !! | TTACCTAATTTTCACCTATT+TGG | + | chr3_4:62591837-62591856 | None:intergenic | 25.0% |
| ! | AGAATGGAAATTTCTTTGAT+AGG | - | chr3_4:62591857-62591876 | Msa0512690:CDS | 25.0% |
| !! | TTTATGACATTGATTAATGC+AGG | - | chr3_4:62591985-62592004 | Msa0512690:intron | 25.0% |
| !! | TTATGACATTGATTAATGCA+GGG | - | chr3_4:62591986-62592005 | Msa0512690:intron | 25.0% |
| !!! | AAAAGCAGTACTTTTTTTCT+TGG | + | chr3_4:62590407-62590426 | None:intergenic | 25.0% |
| !!! | AAGAAAAAAAGTACTGCTTT+TGG | - | chr3_4:62590406-62590425 | Msa0512690:intron | 25.0% |
| !! | TTTTGGATCCAAGAAAAAAA+AGG | - | chr3_4:62590423-62590442 | Msa0512690:intron | 25.0% |
| !!! | ATTAACAGCCTTTTTTTTCT+TGG | + | chr3_4:62590434-62590453 | None:intergenic | 25.0% |
| !! | GTAATACCATTTTCTAAATG+TGG | - | chr3_4:62590572-62590591 | Msa0512690:intron | 25.0% |
| ! | TACTGCAAAATTGATATTTC+AGG | - | chr3_4:62590648-62590667 | Msa0512690:CDS | 25.0% |
| ! | ACTGCAAAATTGATATTTCA+GGG | - | chr3_4:62590649-62590668 | Msa0512690:CDS | 25.0% |
| ! | ATAAAAGCAATCATCCATAT+CGG | - | chr3_4:62590754-62590773 | Msa0512690:intron | 25.0% |
| ! | CTTTATATTTCTTCCCATTA+TGG | - | chr3_4:62591007-62591026 | Msa0512690:intron | 25.0% |
| !!! | CGAAACCAATTTTTTTTTAG+AGG | - | chr3_4:62591779-62591798 | Msa0512690:intron | 25.0% |
| !!! | AACCAATTTTTTTTTAGAGG+TGG | - | chr3_4:62591782-62591801 | Msa0512690:intron | 25.0% |
| ! | ATACCAAATAGGTGAAAATT+AGG | - | chr3_4:62591831-62591850 | Msa0512690:CDS | 25.0% |
| !! | TTACCTAATTTTCACCTATT+TGG | + | chr3_4:62591837-62591856 | None:intergenic | 25.0% |
| ! | AGAATGGAAATTTCTTTGAT+AGG | - | chr3_4:62591857-62591876 | Msa0512690:CDS | 25.0% |
| !! | TTTATGACATTGATTAATGC+AGG | - | chr3_4:62591985-62592004 | Msa0512690:intron | 25.0% |
| !! | TTATGACATTGATTAATGCA+GGG | - | chr3_4:62591986-62592005 | Msa0512690:intron | 25.0% |
| ! | TACCATTTTCTAAATGTGGT+AGG | - | chr3_4:62590576-62590595 | Msa0512690:intron | 30.0% |
| CAAAATTGATATTTCAGGGA+AGG | - | chr3_4:62590653-62590672 | Msa0512690:CDS | 30.0% | |
| !! | TATGGATGATTGCTTTTATG+AGG | + | chr3_4:62590753-62590772 | None:intergenic | 30.0% |
| TAAAAGCAATCATCCATATC+GGG | - | chr3_4:62590755-62590774 | Msa0512690:intron | 30.0% | |
| CTCATTAATGTAGCCATAAT+GGG | + | chr3_4:62591023-62591042 | None:intergenic | 30.0% | |
| TCTCATTAATGTAGCCATAA+TGG | + | chr3_4:62591024-62591043 | None:intergenic | 30.0% | |
| ! | ATGAAATTTTACTTCCCTTC+AGG | + | chr3_4:62591101-62591120 | None:intergenic | 30.0% |
| !! | TATGAATGAAGTTTCTAGCA+TGG | - | chr3_4:62591121-62591140 | Msa0512690:intron | 30.0% |
| !! | TAACAAGCTTGTTTCGTTTT+AGG | - | chr3_4:62591351-62591370 | Msa0512690:intron | 30.0% |
| ACATGTATGGATTTGAGAAT+TGG | - | chr3_4:62591380-62591399 | Msa0512690:intron | 30.0% | |
| TATGGATTTGAGAATTGGAA+TGG | - | chr3_4:62591385-62591404 | Msa0512690:intron | 30.0% | |
| TTATAGTGGTCAATACATTC+AGG | + | chr3_4:62591442-62591461 | None:intergenic | 30.0% | |
| ! | ATGTATTGACCACTATAATG+TGG | - | chr3_4:62591444-62591463 | Msa0512690:intron | 30.0% |
| TCAGATATACCACATTATAG+TGG | + | chr3_4:62591456-62591475 | None:intergenic | 30.0% | |
| GTGTAATTGTTTGTACTTGT+AGG | - | chr3_4:62591560-62591579 | Msa0512690:CDS | 30.0% | |
| ATGATCTAAATCACAATGTG+TGG | - | chr3_4:62591667-62591686 | Msa0512690:CDS | 30.0% | |
| ! | CTCCACCTCTAAAAAAAAAT+TGG | + | chr3_4:62591787-62591806 | None:intergenic | 30.0% |
| GGTGAAAATTAGGTAAAGAA+TGG | - | chr3_4:62591841-62591860 | Msa0512690:CDS | 30.0% | |
| !! | CTTTATTAGCTTTGAGACAA+TGG | - | chr3_4:62591914-62591933 | Msa0512690:intron | 30.0% |
| ! | TATGACATTGATTAATGCAG+GGG | - | chr3_4:62591987-62592006 | Msa0512690:intron | 30.0% |
| ! | TACCATTTTCTAAATGTGGT+AGG | - | chr3_4:62590576-62590595 | Msa0512690:intron | 30.0% |
| CAAAATTGATATTTCAGGGA+AGG | - | chr3_4:62590653-62590672 | Msa0512690:CDS | 30.0% | |
| !! | TATGGATGATTGCTTTTATG+AGG | + | chr3_4:62590753-62590772 | None:intergenic | 30.0% |
| TAAAAGCAATCATCCATATC+GGG | - | chr3_4:62590755-62590774 | Msa0512690:intron | 30.0% | |
| CTCATTAATGTAGCCATAAT+GGG | + | chr3_4:62591023-62591042 | None:intergenic | 30.0% | |
| TCTCATTAATGTAGCCATAA+TGG | + | chr3_4:62591024-62591043 | None:intergenic | 30.0% | |
| ! | ATGAAATTTTACTTCCCTTC+AGG | + | chr3_4:62591101-62591120 | None:intergenic | 30.0% |
| !! | TATGAATGAAGTTTCTAGCA+TGG | - | chr3_4:62591121-62591140 | Msa0512690:intron | 30.0% |
| !! | TAACAAGCTTGTTTCGTTTT+AGG | - | chr3_4:62591351-62591370 | Msa0512690:intron | 30.0% |
| ACATGTATGGATTTGAGAAT+TGG | - | chr3_4:62591380-62591399 | Msa0512690:intron | 30.0% | |
| TATGGATTTGAGAATTGGAA+TGG | - | chr3_4:62591385-62591404 | Msa0512690:intron | 30.0% | |
| TTATAGTGGTCAATACATTC+AGG | + | chr3_4:62591442-62591461 | None:intergenic | 30.0% | |
| ! | ATGTATTGACCACTATAATG+TGG | - | chr3_4:62591444-62591463 | Msa0512690:intron | 30.0% |
| TCAGATATACCACATTATAG+TGG | + | chr3_4:62591456-62591475 | None:intergenic | 30.0% | |
| GTGTAATTGTTTGTACTTGT+AGG | - | chr3_4:62591560-62591579 | Msa0512690:CDS | 30.0% | |
| ATGATCTAAATCACAATGTG+TGG | - | chr3_4:62591667-62591686 | Msa0512690:CDS | 30.0% | |
| ! | CTCCACCTCTAAAAAAAAAT+TGG | + | chr3_4:62591787-62591806 | None:intergenic | 30.0% |
| GGTGAAAATTAGGTAAAGAA+TGG | - | chr3_4:62591841-62591860 | Msa0512690:CDS | 30.0% | |
| !! | CTTTATTAGCTTTGAGACAA+TGG | - | chr3_4:62591914-62591933 | Msa0512690:intron | 30.0% |
| ! | TATGACATTGATTAATGCAG+GGG | - | chr3_4:62591987-62592006 | Msa0512690:intron | 30.0% |
| AAAGGCTGTTAATAATGCTG+AGG | - | chr3_4:62590441-62590460 | Msa0512690:intron | 35.0% | |
| AAGGCTGTTAATAATGCTGA+GGG | - | chr3_4:62590442-62590461 | Msa0512690:intron | 35.0% | |
| ! | GGTTTAGAAACTTCTTTTGC+AGG | - | chr3_4:62590463-62590482 | Msa0512690:intron | 35.0% |
| TGCCTACCACATTTAGAAAA+TGG | + | chr3_4:62590581-62590600 | None:intergenic | 35.0% | |
| ! | TTTTCTAAATGTGGTAGGCA+TGG | - | chr3_4:62590581-62590600 | Msa0512690:intron | 35.0% |
| ! | TGCGTAAAATGCTTTTCTGT+TGG | - | chr3_4:62590714-62590733 | Msa0512690:intron | 35.0% |
| TTTCATACCATAACCCGATA+TGG | + | chr3_4:62590771-62590790 | None:intergenic | 35.0% | |
| ATATTGTGCAGTATCGCATT+AGG | - | chr3_4:62590822-62590841 | Msa0512690:CDS | 35.0% | |
| GCATAGCTAATTAAAGCACA+TGG | + | chr3_4:62590920-62590939 | None:intergenic | 35.0% | |
| CTCAAATCCATACATGTCAA+GGG | + | chr3_4:62591377-62591396 | None:intergenic | 35.0% | |
| TCTCAAATCCATACATGTCA+AGG | + | chr3_4:62591378-62591397 | None:intergenic | 35.0% | |
| TCAAATAGACTTACAGGAAG+AGG | + | chr3_4:62591493-62591512 | None:intergenic | 35.0% | |
| ! | TAGGATTTGTCTTATTGCGA+GGG | - | chr3_4:62591579-62591598 | Msa0512690:CDS | 35.0% |
| CAACCTTTATCCCACTATTT+GGG | - | chr3_4:62591737-62591756 | Msa0512690:intron | 35.0% | |
| AACCTTTATCCCACTATTTG+GGG | - | chr3_4:62591738-62591757 | Msa0512690:intron | 35.0% | |
| !! | TATTAGCTTTGAGACAATGG+TGG | - | chr3_4:62591917-62591936 | Msa0512690:intron | 35.0% |
| !! | ATTAGCTTTGAGACAATGGT+GGG | - | chr3_4:62591918-62591937 | Msa0512690:intron | 35.0% |
| AAAGGCTGTTAATAATGCTG+AGG | - | chr3_4:62590441-62590460 | Msa0512690:intron | 35.0% | |
| AAGGCTGTTAATAATGCTGA+GGG | - | chr3_4:62590442-62590461 | Msa0512690:intron | 35.0% | |
| ! | GGTTTAGAAACTTCTTTTGC+AGG | - | chr3_4:62590463-62590482 | Msa0512690:intron | 35.0% |
| TGCCTACCACATTTAGAAAA+TGG | + | chr3_4:62590581-62590600 | None:intergenic | 35.0% | |
| ! | TTTTCTAAATGTGGTAGGCA+TGG | - | chr3_4:62590581-62590600 | Msa0512690:intron | 35.0% |
| ! | TGCGTAAAATGCTTTTCTGT+TGG | - | chr3_4:62590714-62590733 | Msa0512690:intron | 35.0% |
| TTTCATACCATAACCCGATA+TGG | + | chr3_4:62590771-62590790 | None:intergenic | 35.0% | |
| ATATTGTGCAGTATCGCATT+AGG | - | chr3_4:62590822-62590841 | Msa0512690:CDS | 35.0% | |
| GCATAGCTAATTAAAGCACA+TGG | + | chr3_4:62590920-62590939 | None:intergenic | 35.0% | |
| CTCAAATCCATACATGTCAA+GGG | + | chr3_4:62591377-62591396 | None:intergenic | 35.0% | |
| TCTCAAATCCATACATGTCA+AGG | + | chr3_4:62591378-62591397 | None:intergenic | 35.0% | |
| TCAAATAGACTTACAGGAAG+AGG | + | chr3_4:62591493-62591512 | None:intergenic | 35.0% | |
| ! | TAGGATTTGTCTTATTGCGA+GGG | - | chr3_4:62591579-62591598 | Msa0512690:CDS | 35.0% |
| CAACCTTTATCCCACTATTT+GGG | - | chr3_4:62591737-62591756 | Msa0512690:intron | 35.0% | |
| AACCTTTATCCCACTATTTG+GGG | - | chr3_4:62591738-62591757 | Msa0512690:intron | 35.0% | |
| !! | TATTAGCTTTGAGACAATGG+TGG | - | chr3_4:62591917-62591936 | Msa0512690:intron | 35.0% |
| !! | ATTAGCTTTGAGACAATGGT+GGG | - | chr3_4:62591918-62591937 | Msa0512690:intron | 35.0% |
| TTCATCTCTGCACTTCTTCT+TGG | - | chr3_4:62590297-62590316 | Msa0512690:intron | 40.0% | |
| CAATCATCCATATCGGGTTA+TGG | - | chr3_4:62590761-62590780 | Msa0512690:intron | 40.0% | |
| CACTTTCAGCATAACCTGAA+GGG | - | chr3_4:62591084-62591103 | Msa0512690:CDS | 40.0% | |
| TGAAGAGAGGTTACTTCTTG+AGG | - | chr3_4:62591232-62591251 | Msa0512690:intron | 40.0% | |
| AGGTTACTTCTTGAGGTTTG+TGG | - | chr3_4:62591239-62591258 | Msa0512690:intron | 40.0% | |
| TGAGGTTTGTGGTTTGAGTA+TGG | - | chr3_4:62591250-62591269 | Msa0512690:intron | 40.0% | |
| ! | TTTTAGGCCCTTGACATGTA+TGG | - | chr3_4:62591367-62591386 | Msa0512690:intron | 40.0% |
| !! | AATGGTGTTGCTGAACATGT+TGG | - | chr3_4:62591403-62591422 | Msa0512690:intron | 40.0% |
| !! | ATGGTGTTGCTGAACATGTT+GGG | - | chr3_4:62591404-62591423 | Msa0512690:intron | 40.0% |
| GCGTTGTCAAATAGACTTAC+AGG | + | chr3_4:62591499-62591518 | None:intergenic | 40.0% | |
| TACACCAAGCATTCAAACAG+AGG | + | chr3_4:62591545-62591564 | None:intergenic | 40.0% | |
| ! | GTAGGATTTGTCTTATTGCG+AGG | - | chr3_4:62591578-62591597 | Msa0512690:CDS | 40.0% |
| ! | AGGATTTGTCTTATTGCGAG+GGG | - | chr3_4:62591580-62591599 | Msa0512690:CDS | 40.0% |
| AAGGGAGATCAACTCAAGAA+AGG | - | chr3_4:62591633-62591652 | Msa0512690:CDS | 40.0% | |
| GCAACCTTTATCCCACTATT+TGG | - | chr3_4:62591736-62591755 | Msa0512690:intron | 40.0% | |
| ! | AACCCCAAATAGTGGGATAA+AGG | + | chr3_4:62591743-62591762 | None:intergenic | 40.0% |
| TGTAGCAAACCCCAAATAGT+GGG | + | chr3_4:62591750-62591769 | None:intergenic | 40.0% | |
| ATGTAGCAAACCCCAAATAG+TGG | + | chr3_4:62591751-62591770 | None:intergenic | 40.0% | |
| !! | ACTATTTGGGGTTTGCTACA+TGG | - | chr3_4:62591750-62591769 | Msa0512690:intron | 40.0% |
| TAATGCAGGGGATAAAGCTT+TGG | - | chr3_4:62591999-62592018 | Msa0512690:intron | 40.0% | |
| TTCATCTCTGCACTTCTTCT+TGG | - | chr3_4:62590297-62590316 | Msa0512690:intron | 40.0% | |
| CAATCATCCATATCGGGTTA+TGG | - | chr3_4:62590761-62590780 | Msa0512690:intron | 40.0% | |
| CACTTTCAGCATAACCTGAA+GGG | - | chr3_4:62591084-62591103 | Msa0512690:CDS | 40.0% | |
| TGAAGAGAGGTTACTTCTTG+AGG | - | chr3_4:62591232-62591251 | Msa0512690:intron | 40.0% | |
| AGGTTACTTCTTGAGGTTTG+TGG | - | chr3_4:62591239-62591258 | Msa0512690:intron | 40.0% | |
| TGAGGTTTGTGGTTTGAGTA+TGG | - | chr3_4:62591250-62591269 | Msa0512690:intron | 40.0% | |
| ! | TTTTAGGCCCTTGACATGTA+TGG | - | chr3_4:62591367-62591386 | Msa0512690:intron | 40.0% |
| !! | AATGGTGTTGCTGAACATGT+TGG | - | chr3_4:62591403-62591422 | Msa0512690:intron | 40.0% |
| !! | ATGGTGTTGCTGAACATGTT+GGG | - | chr3_4:62591404-62591423 | Msa0512690:intron | 40.0% |
| GCGTTGTCAAATAGACTTAC+AGG | + | chr3_4:62591499-62591518 | None:intergenic | 40.0% | |
| TACACCAAGCATTCAAACAG+AGG | + | chr3_4:62591545-62591564 | None:intergenic | 40.0% | |
| ! | GTAGGATTTGTCTTATTGCG+AGG | - | chr3_4:62591578-62591597 | Msa0512690:CDS | 40.0% |
| ! | AGGATTTGTCTTATTGCGAG+GGG | - | chr3_4:62591580-62591599 | Msa0512690:CDS | 40.0% |
| AAGGGAGATCAACTCAAGAA+AGG | - | chr3_4:62591633-62591652 | Msa0512690:CDS | 40.0% | |
| GCAACCTTTATCCCACTATT+TGG | - | chr3_4:62591736-62591755 | Msa0512690:intron | 40.0% | |
| ! | AACCCCAAATAGTGGGATAA+AGG | + | chr3_4:62591743-62591762 | None:intergenic | 40.0% |
| TGTAGCAAACCCCAAATAGT+GGG | + | chr3_4:62591750-62591769 | None:intergenic | 40.0% | |
| ATGTAGCAAACCCCAAATAG+TGG | + | chr3_4:62591751-62591770 | None:intergenic | 40.0% | |
| !! | ACTATTTGGGGTTTGCTACA+TGG | - | chr3_4:62591750-62591769 | Msa0512690:intron | 40.0% |
| TAATGCAGGGGATAAAGCTT+TGG | - | chr3_4:62591999-62592018 | Msa0512690:intron | 40.0% | |
| !!! | ATGCTTTTCTGTTGGTGCTG+AGG | - | chr3_4:62590722-62590741 | Msa0512690:intron | 45.0% |
| GCACTTTCAGCATAACCTGA+AGG | - | chr3_4:62591083-62591102 | Msa0512690:CDS | 45.0% | |
| TTCCGCTTACATGTCCAGAT+TGG | - | chr3_4:62591201-62591220 | Msa0512690:intron | 45.0% | |
| CTCCAATCTGGACATGTAAG+CGG | + | chr3_4:62591206-62591225 | None:intergenic | 45.0% | |
| GCAACCTCTGTTTGAATGCT+TGG | - | chr3_4:62591538-62591557 | Msa0512690:CDS | 45.0% | |
| !!! | ATGCTTTTCTGTTGGTGCTG+AGG | - | chr3_4:62590722-62590741 | Msa0512690:intron | 45.0% |
| GCACTTTCAGCATAACCTGA+AGG | - | chr3_4:62591083-62591102 | Msa0512690:CDS | 45.0% | |
| TTCCGCTTACATGTCCAGAT+TGG | - | chr3_4:62591201-62591220 | Msa0512690:intron | 45.0% | |
| CTCCAATCTGGACATGTAAG+CGG | + | chr3_4:62591206-62591225 | None:intergenic | 45.0% | |
| GCAACCTCTGTTTGAATGCT+TGG | - | chr3_4:62591538-62591557 | Msa0512690:CDS | 45.0% | |
| GTAGGCATGGAAGTCACTGA+TGG | - | chr3_4:62590594-62590613 | Msa0512690:intron | 50.0% | |
| CATGGAAGTCACTGATGGCA+AGG | - | chr3_4:62590599-62590618 | Msa0512690:intron | 50.0% | |
| TCTTCATGCGCACTCCAATC+TGG | + | chr3_4:62591218-62591237 | None:intergenic | 50.0% | |
| ATTGGAGTGCGCATGAAGAG+AGG | - | chr3_4:62591219-62591238 | Msa0512690:intron | 50.0% | |
| ! | CTTACAGGAAGAGGAGCACA+TGG | + | chr3_4:62591484-62591503 | None:intergenic | 50.0% |
| TTGCGAGGGGAAGAACAAAG+AGG | - | chr3_4:62591593-62591612 | Msa0512690:CDS | 50.0% | |
| AAAGAGGAACTCCGTGCCAT+GGG | - | chr3_4:62591609-62591628 | Msa0512690:CDS | 50.0% | |
| ! | GAGTTGATCTCCCTTTCCCA+TGG | + | chr3_4:62591628-62591647 | None:intergenic | 50.0% |
| GTAGGCATGGAAGTCACTGA+TGG | - | chr3_4:62590594-62590613 | Msa0512690:intron | 50.0% | |
| CATGGAAGTCACTGATGGCA+AGG | - | chr3_4:62590599-62590618 | Msa0512690:intron | 50.0% | |
| TCTTCATGCGCACTCCAATC+TGG | + | chr3_4:62591218-62591237 | None:intergenic | 50.0% | |
| ATTGGAGTGCGCATGAAGAG+AGG | - | chr3_4:62591219-62591238 | Msa0512690:intron | 50.0% | |
| ! | CTTACAGGAAGAGGAGCACA+TGG | + | chr3_4:62591484-62591503 | None:intergenic | 50.0% |
| TTGCGAGGGGAAGAACAAAG+AGG | - | chr3_4:62591593-62591612 | Msa0512690:CDS | 50.0% | |
| AAAGAGGAACTCCGTGCCAT+GGG | - | chr3_4:62591609-62591628 | Msa0512690:CDS | 50.0% | |
| ! | GAGTTGATCTCCCTTTCCCA+TGG | + | chr3_4:62591628-62591647 | None:intergenic | 50.0% |
| CAAAGAGGAACTCCGTGCCA+TGG | - | chr3_4:62591608-62591627 | Msa0512690:CDS | 55.0% | |
| GAACTCCGTGCCATGGGAAA+GGG | - | chr3_4:62591615-62591634 | Msa0512690:CDS | 55.0% | |
| GATCTCCCTTTCCCATGGCA+CGG | + | chr3_4:62591623-62591642 | None:intergenic | 55.0% | |
| CAAAGAGGAACTCCGTGCCA+TGG | - | chr3_4:62591608-62591627 | Msa0512690:CDS | 55.0% | |
| GAACTCCGTGCCATGGGAAA+GGG | - | chr3_4:62591615-62591634 | Msa0512690:CDS | 55.0% | |
| GATCTCCCTTTCCCATGGCA+CGG | + | chr3_4:62591623-62591642 | None:intergenic | 55.0% | |
| GGAACTCCGTGCCATGGGAA+AGG | - | chr3_4:62591614-62591633 | Msa0512690:CDS | 60.0% | |
| GGAACTCCGTGCCATGGGAA+AGG | - | chr3_4:62591614-62591633 | Msa0512690:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 62590270 | 62592026 | 62590270 | ID=Msa0512690;Name=Msa0512690 |
| chr3_4 | mRNA | 62590270 | 62592026 | 62590270 | ID=Msa0512690-mRNA-1;Parent=Msa0512690;Name=Msa0512690-mRNA-1;_AED=0.36;_eAED=0.37;_QI=0|0|0|1|1|1|7|0|189 |
| chr3_4 | exon | 62592010 | 62592026 | 62592010 | ID=Msa0512690-mRNA-1:exon:15544;Parent=Msa0512690-mRNA-1 |
| chr3_4 | exon | 62591812 | 62591894 | 62591812 | ID=Msa0512690-mRNA-1:exon:15543;Parent=Msa0512690-mRNA-1 |
| chr3_4 | exon | 62591514 | 62591698 | 62591514 | ID=Msa0512690-mRNA-1:exon:15542;Parent=Msa0512690-mRNA-1 |
| chr3_4 | exon | 62591043 | 62591108 | 62591043 | ID=Msa0512690-mRNA-1:exon:15541;Parent=Msa0512690-mRNA-1 |
| chr3_4 | exon | 62590798 | 62590923 | 62590798 | ID=Msa0512690-mRNA-1:exon:15540;Parent=Msa0512690-mRNA-1 |
| chr3_4 | exon | 62590642 | 62590714 | 62590642 | ID=Msa0512690-mRNA-1:exon:15539;Parent=Msa0512690-mRNA-1 |
| chr3_4 | exon | 62590270 | 62590289 | 62590270 | ID=Msa0512690-mRNA-1:exon:15538;Parent=Msa0512690-mRNA-1 |
| chr3_4 | CDS | 62592010 | 62592026 | 62592010 | ID=Msa0512690-mRNA-1:cds;Parent=Msa0512690-mRNA-1 |
| chr3_4 | CDS | 62591812 | 62591894 | 62591812 | ID=Msa0512690-mRNA-1:cds;Parent=Msa0512690-mRNA-1 |
| chr3_4 | CDS | 62591514 | 62591698 | 62591514 | ID=Msa0512690-mRNA-1:cds;Parent=Msa0512690-mRNA-1 |
| chr3_4 | CDS | 62591043 | 62591108 | 62591043 | ID=Msa0512690-mRNA-1:cds;Parent=Msa0512690-mRNA-1 |
| chr3_4 | CDS | 62590798 | 62590923 | 62590798 | ID=Msa0512690-mRNA-1:cds;Parent=Msa0512690-mRNA-1 |
| chr3_4 | CDS | 62590642 | 62590714 | 62590642 | ID=Msa0512690-mRNA-1:cds;Parent=Msa0512690-mRNA-1 |
| chr3_4 | CDS | 62590270 | 62590289 | 62590270 | ID=Msa0512690-mRNA-1:cds;Parent=Msa0512690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
