Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0513070 | ABD33026.2 | 69.839 | 809 | 219 | 4 | 6 | 806 | 324 | 1115 | 0.0 | 1182 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0513070 | sp|Q9SWG3|FAR1_ARATH | 31.301 | 738 | 467 | 11 | 34 | 764 | 51 | 755 | 4.24e-123 | 393 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0513070 | Q2HSZ7 | 69.839 | 809 | 219 | 4 | 6 | 806 | 324 | 1115 | 0.0 | 1182 |
Gene ID | Type | Classification |
---|---|---|
Msa0513070 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0513070 | MtrunA17_Chr2g0296781 | 74.230 | 714 | 175 | 3 | 40 | 745 | 3 | 715 | 0.0 | 1106 |
Msa0513070 | MtrunA17_Chr6g0477261 | 73.137 | 644 | 154 | 5 | 149 | 774 | 1 | 643 | 0.0 | 953 |
Msa0513070 | MtrunA17_Chr1g0196541 | 61.299 | 770 | 255 | 5 | 40 | 807 | 3 | 731 | 0.0 | 943 |
Msa0513070 | MtrunA17_Chr5g0441581 | 46.142 | 635 | 325 | 6 | 20 | 648 | 15 | 638 | 0.0 | 578 |
Msa0513070 | MtrunA17_Chr2g0291581 | 37.719 | 570 | 328 | 11 | 34 | 594 | 71 | 622 | 1.58e-124 | 389 |
Msa0513070 | MtrunA17_Chr1g0207551 | 37.347 | 573 | 333 | 7 | 34 | 595 | 34 | 591 | 4.87e-120 | 381 |
Msa0513070 | MtrunA17_Chr2g0329031 | 31.102 | 762 | 463 | 17 | 40 | 787 | 20 | 733 | 5.76e-120 | 379 |
Msa0513070 | MtrunA17_Chr3g0080351 | 34.934 | 604 | 342 | 9 | 34 | 619 | 76 | 646 | 1.29e-115 | 370 |
Msa0513070 | MtrunA17_Chr5g0448761 | 35.889 | 574 | 346 | 11 | 34 | 593 | 60 | 625 | 4.52e-115 | 367 |
Msa0513070 | MtrunA17_Chr1g0202341 | 36.632 | 576 | 334 | 13 | 34 | 594 | 51 | 610 | 2.15e-114 | 363 |
Msa0513070 | MtrunA17_Chr2g0291591 | 35.639 | 477 | 301 | 3 | 34 | 507 | 64 | 537 | 9.31e-101 | 323 |
Msa0513070 | MtrunA17_Chr5g0440451 | 32.143 | 644 | 376 | 18 | 5 | 619 | 19 | 630 | 2.70e-94 | 315 |
Msa0513070 | MtrunA17_Chr3g0118611 | 37.260 | 416 | 241 | 7 | 203 | 614 | 118 | 517 | 2.30e-85 | 288 |
Msa0513070 | MtrunA17_Chr5g0448511 | 35.338 | 399 | 250 | 5 | 191 | 588 | 1 | 392 | 5.99e-85 | 281 |
Msa0513070 | MtrunA17_Chr6g0476441 | 51.034 | 290 | 103 | 4 | 533 | 784 | 1 | 289 | 2.62e-81 | 262 |
Msa0513070 | MtrunA17_Chr8g0363841 | 29.252 | 588 | 381 | 7 | 24 | 593 | 7 | 577 | 1.24e-78 | 267 |
Msa0513070 | MtrunA17_Chr2g0287061 | 32.105 | 570 | 322 | 14 | 34 | 591 | 183 | 699 | 3.54e-78 | 269 |
Msa0513070 | MtrunA17_Chr2g0324011 | 29.116 | 577 | 380 | 12 | 31 | 593 | 7 | 568 | 3.01e-77 | 261 |
Msa0513070 | MtrunA17_Chr2g0287651 | 27.019 | 644 | 436 | 11 | 26 | 654 | 69 | 693 | 6.52e-77 | 267 |
Msa0513070 | MtrunA17_Chr1g0198761 | 29.213 | 712 | 425 | 24 | 25 | 695 | 37 | 710 | 5.62e-72 | 251 |
Msa0513070 | MtrunA17_Chr1g0203051 | 28.154 | 547 | 366 | 13 | 40 | 574 | 85 | 616 | 1.02e-66 | 234 |
Msa0513070 | MtrunA17_Chr2g0276841 | 26.974 | 608 | 364 | 20 | 23 | 590 | 59 | 626 | 6.57e-65 | 230 |
Msa0513070 | MtrunA17_Chr1g0203721 | 28.192 | 603 | 386 | 15 | 15 | 593 | 44 | 623 | 7.46e-63 | 227 |
Msa0513070 | MtrunA17_Chr6g0458391 | 26.573 | 572 | 383 | 11 | 31 | 593 | 222 | 765 | 1.40e-61 | 222 |
Msa0513070 | MtrunA17_Chr3g0082121 | 30.016 | 613 | 361 | 20 | 12 | 593 | 15 | 590 | 1.45e-61 | 221 |
Msa0513070 | MtrunA17_Chr2g0294841 | 24.791 | 718 | 465 | 19 | 33 | 707 | 44 | 729 | 2.66e-55 | 204 |
Msa0513070 | MtrunA17_Chr5g0431001 | 30.947 | 433 | 269 | 11 | 30 | 439 | 57 | 482 | 1.55e-52 | 191 |
Msa0513070 | MtrunA17_Chr2g0290391 | 26.264 | 613 | 393 | 21 | 13 | 591 | 24 | 611 | 2.11e-48 | 182 |
Msa0513070 | MtrunA17_Chr1g0164591 | 34.043 | 329 | 175 | 11 | 112 | 421 | 3 | 308 | 2.61e-44 | 162 |
Msa0513070 | MtrunA17_Chr7g0258861 | 30.690 | 290 | 188 | 5 | 27 | 306 | 3 | 289 | 1.85e-39 | 148 |
Msa0513070 | MtrunA17_Chr6g0476431 | 64.286 | 84 | 30 | 0 | 40 | 123 | 3 | 86 | 7.13e-32 | 119 |
Msa0513070 | MtrunA17_Chr6g0451441 | 31.500 | 200 | 127 | 5 | 2 | 195 | 52 | 247 | 8.47e-21 | 96.7 |
Msa0513070 | MtrunA17_Chr2g0308841 | 28.311 | 219 | 140 | 5 | 378 | 590 | 17 | 224 | 2.60e-16 | 80.1 |
Msa0513070 | MtrunA17_Chr1g0172041 | 31.818 | 110 | 74 | 1 | 507 | 616 | 3 | 111 | 1.91e-15 | 73.2 |
Msa0513070 | MtrunA17_Chr3g0077731 | 51.852 | 108 | 43 | 3 | 646 | 745 | 1 | 107 | 9.39e-15 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0513070 | AT4G15090.1 | 31.301 | 738 | 467 | 11 | 34 | 764 | 51 | 755 | 4.31e-124 | 393 |
Msa0513070 | AT4G15090.5 | 31.301 | 738 | 467 | 11 | 34 | 764 | 51 | 755 | 4.31e-124 | 393 |
Msa0513070 | AT4G15090.3 | 31.301 | 738 | 467 | 11 | 34 | 764 | 51 | 755 | 4.31e-124 | 393 |
Msa0513070 | AT4G15090.2 | 31.301 | 738 | 467 | 11 | 34 | 764 | 51 | 755 | 4.31e-124 | 393 |
Msa0513070 | AT4G15090.4 | 31.301 | 738 | 467 | 11 | 34 | 764 | 51 | 755 | 4.31e-124 | 393 |
Msa0513070 | AT1G76320.2 | 32.016 | 759 | 459 | 18 | 40 | 777 | 3 | 725 | 1.14e-115 | 368 |
Msa0513070 | AT1G76320.1 | 31.537 | 761 | 462 | 17 | 40 | 777 | 3 | 727 | 1.16e-115 | 368 |
Msa0513070 | AT1G76320.4 | 31.537 | 761 | 462 | 17 | 40 | 777 | 3 | 727 | 1.16e-115 | 368 |
Msa0513070 | AT1G76320.3 | 36.602 | 571 | 326 | 11 | 40 | 598 | 3 | 549 | 1.31e-115 | 366 |
Msa0513070 | AT4G38180.1 | 34.856 | 591 | 356 | 11 | 21 | 593 | 55 | 634 | 3.28e-112 | 360 |
Msa0513070 | AT1G52520.1 | 34.032 | 620 | 370 | 15 | 1 | 596 | 37 | 641 | 6.78e-110 | 352 |
Msa0513070 | AT3G22170.2 | 34.079 | 581 | 336 | 9 | 34 | 596 | 70 | 621 | 1.63e-109 | 355 |
Msa0513070 | AT3G22170.1 | 34.079 | 581 | 336 | 9 | 34 | 596 | 70 | 621 | 1.63e-109 | 355 |
Msa0513070 | AT1G80010.1 | 32.929 | 577 | 362 | 13 | 34 | 594 | 95 | 662 | 2.94e-99 | 324 |
Msa0513070 | AT4G19990.3 | 34.188 | 585 | 318 | 13 | 37 | 598 | 24 | 564 | 4.13e-96 | 317 |
Msa0513070 | AT4G19990.4 | 34.188 | 585 | 318 | 13 | 37 | 598 | 24 | 564 | 4.13e-96 | 317 |
Msa0513070 | AT4G19990.5 | 34.188 | 585 | 318 | 13 | 37 | 598 | 24 | 564 | 5.80e-96 | 316 |
Msa0513070 | AT4G19990.7 | 34.188 | 585 | 318 | 13 | 37 | 598 | 38 | 578 | 8.72e-96 | 316 |
Msa0513070 | AT4G19990.6 | 34.188 | 585 | 318 | 13 | 37 | 598 | 24 | 564 | 9.19e-96 | 316 |
Msa0513070 | AT4G19990.2 | 34.188 | 585 | 318 | 13 | 37 | 598 | 24 | 564 | 9.19e-96 | 316 |
Msa0513070 | AT4G19990.1 | 35.248 | 505 | 277 | 9 | 100 | 598 | 47 | 507 | 1.22e-90 | 300 |
Msa0513070 | AT2G27110.2 | 31.433 | 614 | 351 | 18 | 9 | 593 | 7 | 579 | 1.93e-86 | 293 |
Msa0513070 | AT2G27110.1 | 31.433 | 614 | 351 | 18 | 9 | 593 | 7 | 579 | 1.93e-86 | 293 |
Msa0513070 | AT2G32250.5 | 34.624 | 439 | 272 | 6 | 210 | 645 | 176 | 602 | 8.48e-84 | 284 |
Msa0513070 | AT2G32250.7 | 34.624 | 439 | 272 | 6 | 210 | 645 | 135 | 561 | 1.13e-83 | 283 |
Msa0513070 | AT2G32250.8 | 34.624 | 439 | 272 | 6 | 210 | 645 | 135 | 561 | 1.19e-83 | 283 |
Msa0513070 | AT2G32250.2 | 34.624 | 439 | 272 | 6 | 210 | 645 | 176 | 602 | 1.77e-83 | 284 |
Msa0513070 | AT2G32250.4 | 34.624 | 439 | 272 | 6 | 210 | 645 | 176 | 602 | 1.77e-83 | 284 |
Msa0513070 | AT2G32250.6 | 34.624 | 439 | 272 | 6 | 210 | 645 | 176 | 602 | 1.96e-83 | 284 |
Msa0513070 | AT2G32250.1 | 34.624 | 439 | 272 | 6 | 210 | 645 | 176 | 602 | 1.96e-83 | 284 |
Msa0513070 | AT2G32250.3 | 34.624 | 439 | 272 | 6 | 210 | 645 | 176 | 602 | 1.96e-83 | 284 |
Msa0513070 | AT2G27110.3 | 34.685 | 444 | 259 | 11 | 158 | 593 | 14 | 434 | 4.06e-81 | 275 |
Msa0513070 | AT3G06250.2 | 30.069 | 582 | 350 | 12 | 14 | 591 | 174 | 702 | 3.74e-77 | 266 |
Msa0513070 | AT3G06250.1 | 30.069 | 582 | 350 | 12 | 14 | 591 | 174 | 702 | 3.74e-77 | 266 |
Msa0513070 | AT3G06250.3 | 30.069 | 582 | 350 | 12 | 14 | 591 | 174 | 702 | 3.74e-77 | 266 |
Msa0513070 | AT5G18960.2 | 30.906 | 563 | 337 | 14 | 34 | 591 | 211 | 726 | 7.25e-77 | 265 |
Msa0513070 | AT5G18960.1 | 30.906 | 563 | 337 | 14 | 34 | 591 | 211 | 726 | 7.25e-77 | 265 |
Msa0513070 | AT4G38170.1 | 34.223 | 412 | 253 | 9 | 199 | 605 | 13 | 411 | 8.15e-77 | 259 |
Msa0513070 | AT1G10240.2 | 27.869 | 610 | 361 | 22 | 20 | 590 | 35 | 604 | 3.54e-65 | 231 |
Msa0513070 | AT1G10240.1 | 27.869 | 610 | 361 | 22 | 20 | 590 | 35 | 604 | 3.54e-65 | 231 |
Msa0513070 | AT5G28530.3 | 25.484 | 620 | 402 | 20 | 4 | 591 | 24 | 615 | 3.59e-48 | 182 |
Msa0513070 | AT5G28530.2 | 25.484 | 620 | 402 | 20 | 4 | 591 | 24 | 615 | 3.59e-48 | 182 |
Msa0513070 | AT5G28530.1 | 25.481 | 624 | 401 | 21 | 4 | 591 | 24 | 619 | 2.85e-47 | 179 |
Msa0513070 | AT5G28530.5 | 23.481 | 609 | 365 | 23 | 4 | 591 | 24 | 552 | 3.95e-30 | 127 |
Msa0513070 | AT5G28530.4 | 23.491 | 613 | 364 | 24 | 4 | 591 | 24 | 556 | 2.41e-29 | 124 |
Find 116 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCATTGGTGAATGCTTTC+TGG | 0.174694 | 3_4:-63217318 | None:intergenic |
CCATCTTCTTCTATAATTTC+AGG | 0.175398 | 3_4:-63217832 | None:intergenic |
TATCAAAACCACATTTAATA+AGG | 0.185554 | 3_4:-63217654 | None:intergenic |
CTAAAATAGCGTGCTTTGTT+AGG | 0.188876 | 3_4:-63216260 | None:intergenic |
CATATGTGAGAGACACATTT+TGG | 0.193584 | 3_4:+63217092 | Msa0513070:CDS |
AAGGAAAACATGTCTGATTT+TGG | 0.198510 | 3_4:+63217241 | Msa0513070:CDS |
TCATCTTCATGAACACTATT+TGG | 0.200020 | 3_4:-63215936 | None:intergenic |
TCACTCATAAGTATTGAATT+TGG | 0.202186 | 3_4:-63218324 | None:intergenic |
CAACCTCCACTTGAAATTCT+TGG | 0.215469 | 3_4:-63217345 | None:intergenic |
CACCATCGATGGCGAGCTTT+TGG | 0.238537 | 3_4:-63216860 | None:intergenic |
GTTGTTTACGGAATGTATTT+TGG | 0.248308 | 3_4:+63216555 | Msa0513070:CDS |
TTTGAGTAAAAGTGATTTCA+TGG | 0.249102 | 3_4:+63216979 | Msa0513070:CDS |
ATAGCTTGTGTAAGTCATTT+TGG | 0.262515 | 3_4:+63217280 | Msa0513070:CDS |
CGTAGAAGCAACTTCGTAAA+AGG | 0.287052 | 3_4:-63217725 | None:intergenic |
TTCATGACTTGAGGATAAAA+TGG | 0.287642 | 3_4:-63218442 | None:intergenic |
TGATCAATTATTATGGCATT+TGG | 0.287902 | 3_4:-63216800 | None:intergenic |
CTTTGTGTGCTTAAGCTAAC+AGG | 0.298887 | 3_4:+63217562 | Msa0513070:CDS |
TATGCCCGGTCTATAGGTTT+TGG | 0.300318 | 3_4:+63216020 | Msa0513070:CDS |
GTCTCCGCACTTTATCTATA+TGG | 0.324818 | 3_4:-63216430 | None:intergenic |
TGGTGAATGCTTTCTGGAAT+TGG | 0.326923 | 3_4:-63217312 | None:intergenic |
AGGGCTGCATATGAATATTT+TGG | 0.330794 | 3_4:+63216593 | Msa0513070:CDS |
AAGTGCGGAGACTGCGACTT+GGG | 0.331491 | 3_4:+63216441 | Msa0513070:CDS |
TTGATGATAAAAGTTGTTTA+CGG | 0.332175 | 3_4:+63216543 | Msa0513070:CDS |
TTTGTGGCATATAATGAAAA+AGG | 0.344495 | 3_4:+63216883 | Msa0513070:CDS |
AGTATGAACTCATTCTTTGA+TGG | 0.348820 | 3_4:+63217145 | Msa0513070:CDS |
CTCAGAGTCTTTCTCATTGA+AGG | 0.353579 | 3_4:-63217485 | None:intergenic |
CACAGTGGAGGAAGGATATA+AGG | 0.358221 | 3_4:+63217620 | Msa0513070:CDS |
AAGAGTTATGCCCGGTCTAT+AGG | 0.361091 | 3_4:+63216014 | Msa0513070:CDS |
TTTGATGATTTCCACTTCCT+TGG | 0.375605 | 3_4:-63217993 | None:intergenic |
ATTGTCTTGATCAATTATTA+TGG | 0.376901 | 3_4:-63216807 | None:intergenic |
ACTTATGAGTGAAGTATATC+AGG | 0.377433 | 3_4:+63218335 | Msa0513070:CDS |
TCATGCTTGCTTTGATAGAT+TGG | 0.388712 | 3_4:+63217384 | Msa0513070:CDS |
ATCAAAACCACATTTAATAA+GGG | 0.391774 | 3_4:-63217653 | None:intergenic |
CATCTTCTTCTATAATTTCA+GGG | 0.405722 | 3_4:-63217831 | None:intergenic |
CCTTTACTTTGAGTCGGTAC+AGG | 0.411703 | 3_4:-63217889 | None:intergenic |
AAGGGCGTCCTCCTTCAAAA+AGG | 0.415773 | 3_4:+63217908 | Msa0513070:CDS |
ATTTGATGAAAGAAATCATT+GGG | 0.419005 | 3_4:+63217063 | Msa0513070:CDS |
GGAGGAAGTATTTGTATCTT+CGG | 0.428709 | 3_4:+63215863 | None:intergenic |
TAAAATAGCGTGCTTTGTTA+GGG | 0.448123 | 3_4:-63216259 | None:intergenic |
AAAGTGATTTCATGGAAAAG+TGG | 0.450883 | 3_4:+63216987 | Msa0513070:CDS |
AAGTATTGAATTTGGATTGA+AGG | 0.452798 | 3_4:-63218316 | None:intergenic |
CTCGCCATCGATGGTGTTTG+TGG | 0.452930 | 3_4:+63216867 | Msa0513070:CDS |
GAATATGACATTTGGTGAAA+AGG | 0.456326 | 3_4:+63216397 | Msa0513070:CDS |
CCATGGTCAATCTGTGTTGT+TGG | 0.460551 | 3_4:+63216694 | Msa0513070:CDS |
AATTAAAGACATAGTGTTTG+AGG | 0.465732 | 3_4:+63217459 | Msa0513070:CDS |
CATGGTCAATCTGTGTTGTT+GGG | 0.466450 | 3_4:+63216695 | Msa0513070:CDS |
CTAAATATAGTTCCAACCTT+AGG | 0.468412 | 3_4:-63215963 | None:intergenic |
ACTCCAACAAAAGGAGCAAA+TGG | 0.472118 | 3_4:-63216665 | None:intergenic |
TGTTGTTTGTTTCAATTCAA+AGG | 0.475247 | 3_4:+63217520 | Msa0513070:CDS |
CCACTGTGAGAAAATATAAG+AGG | 0.477523 | 3_4:-63217605 | None:intergenic |
TTTGGGCAGATGCGAGATGT+AGG | 0.483477 | 3_4:+63216573 | Msa0513070:CDS |
AGTATTGAATTTGGATTGAA+GGG | 0.484124 | 3_4:-63218315 | None:intergenic |
TTGGCTGTTCACAACATGGT+TGG | 0.487761 | 3_4:+63216757 | Msa0513070:CDS |
CCTGAAATTATAGAAGAAGA+TGG | 0.488011 | 3_4:+63217832 | Msa0513070:CDS |
TATCCTCAAGTCATGAATCA+TGG | 0.488967 | 3_4:+63218448 | Msa0513070:CDS |
CTGTACCGACTCAAAGTAAA+GGG | 0.491734 | 3_4:+63217890 | Msa0513070:CDS |
CGGAGACTGCGACTTGGGGT+TGG | 0.494185 | 3_4:+63216446 | Msa0513070:CDS |
GTTCAAGTAGTTGATAAAGT+TGG | 0.495312 | 3_4:+63218127 | Msa0513070:CDS |
AATGCATGTATTTCTTTAGA+CGG | 0.501759 | 3_4:+63216188 | Msa0513070:CDS |
CTATAGTTGTTGAAGCGAAT+GGG | 0.503159 | 3_4:+63216369 | Msa0513070:CDS |
CATTCAATCTAGCCTTGCAC+TGG | 0.503380 | 3_4:-63216169 | None:intergenic |
TATTTGATGAAAGAAATCAT+TGG | 0.505297 | 3_4:+63217062 | Msa0513070:CDS |
AAGTGATTTCATGGAAAAGT+GGG | 0.506412 | 3_4:+63216988 | Msa0513070:CDS |
TCTATAGTTGTTGAAGCGAA+TGG | 0.507984 | 3_4:+63216368 | Msa0513070:CDS |
GCTTGCTTTGATAGATTGGA+AGG | 0.517556 | 3_4:+63217388 | Msa0513070:CDS |
AATGTGTCTCTCACATATGT+AGG | 0.518863 | 3_4:-63217088 | None:intergenic |
CTTTACTTTGAGTCGGTACA+GGG | 0.521344 | 3_4:-63217888 | None:intergenic |
TGGTGATTTACTCCAACAAA+AGG | 0.525957 | 3_4:-63216674 | None:intergenic |
TCAGGATAACGAATGGTTGA+AGG | 0.526171 | 3_4:+63217036 | Msa0513070:CDS |
TGGATCCTCGTTTGAAAAGG+AGG | 0.528466 | 3_4:+63216297 | Msa0513070:CDS |
GGGTATGAGAATATGACATT+TGG | 0.528947 | 3_4:+63216389 | Msa0513070:CDS |
GAAGATGAAATACCTAAGGT+TGG | 0.529175 | 3_4:+63215951 | Msa0513070:CDS |
TTCCAAAAGCTCGCCATCGA+TGG | 0.531681 | 3_4:+63216858 | Msa0513070:CDS |
TTGGGCAGATGCGAGATGTA+GGG | 0.538615 | 3_4:+63216574 | Msa0513070:CDS |
TGTTGTGAACAGCCAAGTAA+AGG | 0.547394 | 3_4:-63216750 | None:intergenic |
TAACTCCAAAACCTATAGAC+CGG | 0.548272 | 3_4:-63216025 | None:intergenic |
AGGATACTAAGACCTTTACT+TGG | 0.548532 | 3_4:+63216738 | Msa0513070:CDS |
CAGGATAACGAATGGTTGAA+GGG | 0.548682 | 3_4:+63217037 | Msa0513070:CDS |
CTTTATCTATATGGTTCCTA+CGG | 0.551458 | 3_4:-63216421 | None:intergenic |
GAAGGAAATAATAGATGTGA+TGG | 0.552319 | 3_4:+63215903 | Msa0513070:CDS |
AGGCATACCCTTATTAAATG+TGG | 0.553411 | 3_4:+63217646 | Msa0513070:CDS |
TTACTTGGCTGTTCACAACA+TGG | 0.555090 | 3_4:+63216753 | Msa0513070:CDS |
ATTCCAAGAATTTCAAGTGG+AGG | 0.555252 | 3_4:+63217342 | Msa0513070:CDS |
TTCAGGGCATGTTTCTTGAG+AGG | 0.556231 | 3_4:-63217815 | None:intergenic |
ATTTGTATCTTCGGATGAAG+AGG | 0.560669 | 3_4:+63215872 | Msa0513070:CDS |
ATTGAAAGATAAAGTTGAGA+AGG | 0.561801 | 3_4:+63217222 | Msa0513070:CDS |
TTAGAACTCAATGATCAAGC+TGG | 0.567016 | 3_4:+63216320 | Msa0513070:CDS |
CCTGTACCGACTCAAAGTAA+AGG | 0.567989 | 3_4:+63217889 | Msa0513070:CDS |
AAAGTGCGGAGACTGCGACT+TGG | 0.575984 | 3_4:+63216440 | Msa0513070:CDS |
TCGCTTCAACAACTATAGAT+CGG | 0.588019 | 3_4:-63216364 | None:intergenic |
CGTGTTATTGATGACGACGA+TGG | 0.590569 | 3_4:-63218606 | None:intergenic |
ACATGGTTGGAATGCATGCA+TGG | 0.592737 | 3_4:+63216770 | Msa0513070:CDS |
TTGAACTTCAGGATAACGAA+TGG | 0.592982 | 3_4:+63217029 | Msa0513070:CDS |
ACACCATGATTCATGACTTG+AGG | 0.597741 | 3_4:-63218451 | None:intergenic |
GGACGCCCTTTACTTTGAGT+CGG | 0.601736 | 3_4:-63217895 | None:intergenic |
TCATGAAGATGAAATACCTA+AGG | 0.606940 | 3_4:+63215947 | Msa0513070:CDS |
AACTCCAAAACCTATAGACC+GGG | 0.618933 | 3_4:-63216024 | None:intergenic |
CTGTTAGCTTAAGCACACAA+AGG | 0.625605 | 3_4:-63217561 | None:intergenic |
AGTATTACAAGAGTTATGCC+CGG | 0.630025 | 3_4:+63216006 | Msa0513070:CDS |
AGTGCGGAGACTGCGACTTG+GGG | 0.633117 | 3_4:+63216442 | Msa0513070:CDS |
TATGCCACAAACACCATCGA+TGG | 0.638359 | 3_4:-63216871 | None:intergenic |
TTTACTCTAGCATGTAGTCG+TGG | 0.642195 | 3_4:+63216089 | Msa0513070:CDS |
AAAATTCCAAGAATTTCAAG+TGG | 0.644675 | 3_4:+63217339 | Msa0513070:CDS |
ACTTGGGGTTGGAGATGCTG+AGG | 0.644897 | 3_4:+63216457 | Msa0513070:CDS |
AAATCATCAAAGTCAACAAG+AGG | 0.645487 | 3_4:+63218005 | Msa0513070:CDS |
GGAGGAAGGATATAAGGCGA+AGG | 0.647816 | 3_4:+63217626 | Msa0513070:CDS |
AGGATAACGAATGGTTGAAG+GGG | 0.650586 | 3_4:+63217038 | Msa0513070:CDS |
CATTTGGTGAAAAGGACCGT+AGG | 0.656494 | 3_4:+63216405 | Msa0513070:CDS |
TGTGAGAAAATATAAGAGGA+CGG | 0.656653 | 3_4:-63217601 | None:intergenic |
TTTGTTGGAGTAAATCACCA+TGG | 0.661689 | 3_4:+63216677 | Msa0513070:CDS |
CTTGCAATTTAGATGCACAC+AGG | 0.664144 | 3_4:-63218099 | None:intergenic |
TTTAGGAGGAATGAACATGG+TGG | 0.670141 | 3_4:+63218276 | Msa0513070:CDS |
ATGTGCTTTACTGTCAAGCG+AGG | 0.675011 | 3_4:+63216718 | Msa0513070:CDS |
CCAACAACACAGATTGACCA+TGG | 0.675112 | 3_4:-63216694 | None:intergenic |
GATGAAGAGGAAATCAACGA+AGG | 0.688631 | 3_4:+63215885 | Msa0513070:CDS |
GGAACCATATAGATAAAGTG+CGG | 0.699737 | 3_4:+63216426 | Msa0513070:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAATTAAAAAAAACATAAG+AGG | - | chr3_4:63218517-63218536 | None:intergenic | 10.0% |
!!! | TTTTAGAAGTAATAAGATTT+TGG | + | chr3_4:63216277-63216296 | Msa0513070:CDS | 15.0% |
!!! | TTCATATTTTGAATTATTAC+AGG | + | chr3_4:63218474-63218493 | Msa0513070:CDS | 15.0% |
!!! | TTGATGATAAAAGTTGTTTA+CGG | + | chr3_4:63216543-63216562 | Msa0513070:CDS | 20.0% |
!! | ATTGTCTTGATCAATTATTA+TGG | - | chr3_4:63216810-63216829 | None:intergenic | 20.0% |
!! | TATTTGATGAAAGAAATCAT+TGG | + | chr3_4:63217062-63217081 | Msa0513070:CDS | 20.0% |
!! | ATTTGATGAAAGAAATCATT+GGG | + | chr3_4:63217063-63217082 | Msa0513070:CDS | 20.0% |
!!! | TGATTTTGGTTCATTTAATA+CGG | + | chr3_4:63217255-63217274 | Msa0513070:CDS | 20.0% |
!! | ATCAAAACCACATTTAATAA+GGG | - | chr3_4:63217656-63217675 | None:intergenic | 20.0% |
!! | TATCAAAACCACATTTAATA+AGG | - | chr3_4:63217657-63217676 | None:intergenic | 20.0% |
!!! | GTCTAATTTTCAATATTTGA+TGG | + | chr3_4:63218071-63218090 | Msa0513070:intron | 20.0% |
!!! | TTTGTTACATGTATGTTTTT+AGG | + | chr3_4:63218239-63218258 | Msa0513070:intron | 20.0% |
!!! | TTGTTACATGTATGTTTTTA+GGG | + | chr3_4:63218240-63218259 | Msa0513070:intron | 20.0% |
!!! | TGTCATTTTTTTCTTTTTGA+AGG | + | chr3_4:63218563-63218582 | Msa0513070:intron | 20.0% |
! | ACTAAACTTAGTAGCAAAAA+TGG | + | chr3_4:63216047-63216066 | Msa0513070:CDS | 25.0% |
! | AATGCATGTATTTCTTTAGA+CGG | + | chr3_4:63216188-63216207 | Msa0513070:CDS | 25.0% |
!! | TTGTTTACGGAATGTATTTT+GGG | + | chr3_4:63216556-63216575 | Msa0513070:CDS | 25.0% |
! | TGATCAATTATTATGGCATT+TGG | - | chr3_4:63216803-63216822 | None:intergenic | 25.0% |
! | TTTGTGGCATATAATGAAAA+AGG | + | chr3_4:63216883-63216902 | Msa0513070:CDS | 25.0% |
! | TTTGAGTAAAAGTGATTTCA+TGG | + | chr3_4:63216979-63216998 | Msa0513070:CDS | 25.0% |
! | ATTGAAAGATAAAGTTGAGA+AGG | + | chr3_4:63217222-63217241 | Msa0513070:CDS | 25.0% |
!! | AAATTCTTGGAATTTTGCAT+TGG | - | chr3_4:63217335-63217354 | None:intergenic | 25.0% |
! | AAAATTCCAAGAATTTCAAG+TGG | + | chr3_4:63217339-63217358 | Msa0513070:CDS | 25.0% |
! | AATTAAAGACATAGTGTTTG+AGG | + | chr3_4:63217459-63217478 | Msa0513070:CDS | 25.0% |
!! | TGTTGTTTGTTTCAATTCAA+AGG | + | chr3_4:63217520-63217539 | Msa0513070:CDS | 25.0% |
!!! | TGTGGTTTTGATAATTTAGT+TGG | + | chr3_4:63217664-63217683 | Msa0513070:CDS | 25.0% |
! | CATCTTCTTCTATAATTTCA+GGG | - | chr3_4:63217834-63217853 | None:intergenic | 25.0% |
! | TGAATAAACTTGCAAAAAAG+AGG | + | chr3_4:63217956-63217975 | Msa0513070:CDS | 25.0% |
!!! | AATTTTCAATATTTGATGGC+AGG | + | chr3_4:63218075-63218094 | Msa0513070:intron | 25.0% |
!!! | TGTTACATGTATGTTTTTAG+GGG | + | chr3_4:63218241-63218260 | Msa0513070:intron | 25.0% |
!! | AGTATTGAATTTGGATTGAA+GGG | - | chr3_4:63218318-63218337 | None:intergenic | 25.0% |
!!! | AAGTATTGAATTTGGATTGA+AGG | - | chr3_4:63218319-63218338 | None:intergenic | 25.0% |
!!! | TCACTCATAAGTATTGAATT+TGG | - | chr3_4:63218327-63218346 | None:intergenic | 25.0% |
!!! | TTTCTGGAACATTATTATTG+TGG | + | chr3_4:63218386-63218405 | Msa0513070:intron | 25.0% |
!! | AAGTATGTTTCCTGTTATTT+AGG | + | chr3_4:63218417-63218436 | Msa0513070:intron | 25.0% |
! | TAAAATGGAACCTAAATAAC+AGG | - | chr3_4:63218430-63218449 | None:intergenic | 25.0% |
GAAGGAAATAATAGATGTGA+TGG | + | chr3_4:63215903-63215922 | Msa0513070:CDS | 30.0% | |
TCATCTTCATGAACACTATT+TGG | - | chr3_4:63215939-63215958 | None:intergenic | 30.0% | |
TCATGAAGATGAAATACCTA+AGG | + | chr3_4:63215947-63215966 | Msa0513070:CDS | 30.0% | |
CTAAATATAGTTCCAACCTT+AGG | - | chr3_4:63215966-63215985 | None:intergenic | 30.0% | |
!! | TTGCACTGGATTTTTGTTAT+AGG | - | chr3_4:63216158-63216177 | None:intergenic | 30.0% |
TATAACAAAAATCCAGTGCA+AGG | + | chr3_4:63216157-63216176 | Msa0513070:CDS | 30.0% | |
! | TAAAATAGCGTGCTTTGTTA+GGG | - | chr3_4:63216262-63216281 | None:intergenic | 30.0% |
! | GAATATGACATTTGGTGAAA+AGG | + | chr3_4:63216397-63216416 | Msa0513070:CDS | 30.0% |
CTTTATCTATATGGTTCCTA+CGG | - | chr3_4:63216424-63216443 | None:intergenic | 30.0% | |
! | GTTGTTTACGGAATGTATTT+TGG | + | chr3_4:63216555-63216574 | Msa0513070:CDS | 30.0% |
! | ATCTGCAATTGCATTTTTCA+TGG | - | chr3_4:63216834-63216853 | None:intergenic | 30.0% |
AAAGTGATTTCATGGAAAAG+TGG | + | chr3_4:63216987-63217006 | Msa0513070:CDS | 30.0% | |
AAGTGATTTCATGGAAAAGT+GGG | + | chr3_4:63216988-63217007 | Msa0513070:CDS | 30.0% | |
! | GATTGAAGATTTTGAACTTC+AGG | + | chr3_4:63217018-63217037 | Msa0513070:CDS | 30.0% |
! | ATATGTGAGAGACACATTTT+GGG | + | chr3_4:63217093-63217112 | Msa0513070:CDS | 30.0% |
AGTATGAACTCATTCTTTGA+TGG | + | chr3_4:63217145-63217164 | Msa0513070:CDS | 30.0% | |
! | AAGGAAAACATGTCTGATTT+TGG | + | chr3_4:63217241-63217260 | Msa0513070:CDS | 30.0% |
!! | ATAGCTTGTGTAAGTCATTT+TGG | + | chr3_4:63217280-63217299 | Msa0513070:CDS | 30.0% |
TGTGAGAAAATATAAGAGGA+CGG | - | chr3_4:63217604-63217623 | None:intergenic | 30.0% | |
CCATCTTCTTCTATAATTTC+AGG | - | chr3_4:63217835-63217854 | None:intergenic | 30.0% | |
CCTGAAATTATAGAAGAAGA+TGG | + | chr3_4:63217832-63217851 | Msa0513070:CDS | 30.0% | |
! | CACAATTTGATCAACTTTTG+AGG | - | chr3_4:63217938-63217957 | None:intergenic | 30.0% |
AAATCATCAAAGTCAACAAG+AGG | + | chr3_4:63218005-63218024 | Msa0513070:CDS | 30.0% | |
!! | GTTCAAGTAGTTGATAAAGT+TGG | + | chr3_4:63218127-63218146 | Msa0513070:CDS | 30.0% |
!!! | GTTACATGTATGTTTTTAGG+GGG | + | chr3_4:63218242-63218261 | Msa0513070:intron | 30.0% |
!!! | TTACATGTATGTTTTTAGGG+GGG | + | chr3_4:63218243-63218262 | Msa0513070:intron | 30.0% |
ACTTATGAGTGAAGTATATC+AGG | + | chr3_4:63218335-63218354 | Msa0513070:CDS | 30.0% | |
TTCATGACTTGAGGATAAAA+TGG | - | chr3_4:63218445-63218464 | None:intergenic | 30.0% | |
ATTTGTATCTTCGGATGAAG+AGG | + | chr3_4:63215872-63215891 | Msa0513070:CDS | 35.0% | |
GAAGATGAAATACCTAAGGT+TGG | + | chr3_4:63215951-63215970 | Msa0513070:CDS | 35.0% | |
AGTATTACAAGAGTTATGCC+CGG | + | chr3_4:63216006-63216025 | Msa0513070:CDS | 35.0% | |
TAACTCCAAAACCTATAGAC+CGG | - | chr3_4:63216028-63216047 | None:intergenic | 35.0% | |
AGTAGCAAAAATGGAGATGA+TGG | + | chr3_4:63216056-63216075 | Msa0513070:CDS | 35.0% | |
! | CTAAAATAGCGTGCTTTGTT+AGG | - | chr3_4:63216263-63216282 | None:intergenic | 35.0% |
! | TTTTGGATCCTCGTTTGAAA+AGG | + | chr3_4:63216294-63216313 | Msa0513070:CDS | 35.0% |
TTAGAACTCAATGATCAAGC+TGG | + | chr3_4:63216320-63216339 | Msa0513070:CDS | 35.0% | |
TCGCTTCAACAACTATAGAT+CGG | - | chr3_4:63216367-63216386 | None:intergenic | 35.0% | |
TCTATAGTTGTTGAAGCGAA+TGG | + | chr3_4:63216368-63216387 | Msa0513070:CDS | 35.0% | |
CTATAGTTGTTGAAGCGAAT+GGG | + | chr3_4:63216369-63216388 | Msa0513070:CDS | 35.0% | |
GGGTATGAGAATATGACATT+TGG | + | chr3_4:63216389-63216408 | Msa0513070:CDS | 35.0% | |
GGAACCATATAGATAAAGTG+CGG | + | chr3_4:63216426-63216445 | Msa0513070:CDS | 35.0% | |
! | AGGGCTGCATATGAATATTT+TGG | + | chr3_4:63216593-63216612 | Msa0513070:CDS | 35.0% |
TGGTGATTTACTCCAACAAA+AGG | - | chr3_4:63216677-63216696 | None:intergenic | 35.0% | |
TTTGTTGGAGTAAATCACCA+TGG | + | chr3_4:63216677-63216696 | Msa0513070:CDS | 35.0% | |
AGGATACTAAGACCTTTACT+TGG | + | chr3_4:63216738-63216757 | Msa0513070:CDS | 35.0% | |
AAAAAGGTTCCAGAAAAGCT+AGG | + | chr3_4:63216899-63216918 | Msa0513070:CDS | 35.0% | |
TTGAACTTCAGGATAACGAA+TGG | + | chr3_4:63217029-63217048 | Msa0513070:CDS | 35.0% | |
AATGTGTCTCTCACATATGT+AGG | - | chr3_4:63217091-63217110 | None:intergenic | 35.0% | |
! | CATATGTGAGAGACACATTT+TGG | + | chr3_4:63217092-63217111 | Msa0513070:CDS | 35.0% |
! | ATTCCAAGAATTTCAAGTGG+AGG | + | chr3_4:63217342-63217361 | Msa0513070:CDS | 35.0% |
TCATGCTTGCTTTGATAGAT+TGG | + | chr3_4:63217384-63217403 | Msa0513070:CDS | 35.0% | |
CCACTGTGAGAAAATATAAG+AGG | - | chr3_4:63217608-63217627 | None:intergenic | 35.0% | |
! | CCTCTTATATTTTCTCACAG+TGG | + | chr3_4:63217605-63217624 | Msa0513070:CDS | 35.0% |
! | CTTATATTTTCTCACAGTGG+AGG | + | chr3_4:63217608-63217627 | Msa0513070:CDS | 35.0% |
AGGCATACCCTTATTAAATG+TGG | + | chr3_4:63217646-63217665 | Msa0513070:CDS | 35.0% | |
! | CTTTTACGAAGTTGCTTCTA+CGG | + | chr3_4:63217726-63217745 | Msa0513070:CDS | 35.0% |
! | TTTGAGGACTTCCTTTTTGA+AGG | - | chr3_4:63217922-63217941 | None:intergenic | 35.0% |
!!! | ACTTCCTTGGCTTCTTTTTT+GGG | - | chr3_4:63217983-63218002 | None:intergenic | 35.0% |
! | TTTGATGATTTCCACTTCCT+TGG | - | chr3_4:63217996-63218015 | None:intergenic | 35.0% |
!!! | AGTTTTAGGAGGAATGAACA+TGG | + | chr3_4:63218273-63218292 | Msa0513070:CDS | 35.0% |
TATCCTCAAGTCATGAATCA+TGG | + | chr3_4:63218448-63218467 | Msa0513070:CDS | 35.0% | |
GATGAAGAGGAAATCAACGA+AGG | + | chr3_4:63215885-63215904 | Msa0513070:CDS | 40.0% | |
AACTCCAAAACCTATAGACC+GGG | - | chr3_4:63216027-63216046 | None:intergenic | 40.0% | |
TTTACTCTAGCATGTAGTCG+TGG | + | chr3_4:63216089-63216108 | Msa0513070:CDS | 40.0% | |
! | TCTAACCTCCTTTTCAAACG+AGG | - | chr3_4:63216305-63216324 | None:intergenic | 40.0% |
GTCTCCGCACTTTATCTATA+TGG | - | chr3_4:63216433-63216452 | None:intergenic | 40.0% | |
!! | ATGCCATTTGCTCCTTTTGT+TGG | + | chr3_4:63216662-63216681 | Msa0513070:CDS | 40.0% |
ACTCCAACAAAAGGAGCAAA+TGG | - | chr3_4:63216668-63216687 | None:intergenic | 40.0% | |
! | CATGGTCAATCTGTGTTGTT+GGG | + | chr3_4:63216695-63216714 | Msa0513070:CDS | 40.0% |
TGTTGTGAACAGCCAAGTAA+AGG | - | chr3_4:63216753-63216772 | None:intergenic | 40.0% | |
TTACTTGGCTGTTCACAACA+TGG | + | chr3_4:63216753-63216772 | Msa0513070:CDS | 40.0% | |
TCAGGATAACGAATGGTTGA+AGG | + | chr3_4:63217036-63217055 | Msa0513070:CDS | 40.0% | |
CAGGATAACGAATGGTTGAA+GGG | + | chr3_4:63217037-63217056 | Msa0513070:CDS | 40.0% | |
AGGATAACGAATGGTTGAAG+GGG | + | chr3_4:63217038-63217057 | Msa0513070:CDS | 40.0% | |
!! | TGGTGAATGCTTTCTGGAAT+TGG | - | chr3_4:63217315-63217334 | None:intergenic | 40.0% |
! | TTGCATTGGTGAATGCTTTC+TGG | - | chr3_4:63217321-63217340 | None:intergenic | 40.0% |
CAACCTCCACTTGAAATTCT+TGG | - | chr3_4:63217348-63217367 | None:intergenic | 40.0% | |
GCTTGCTTTGATAGATTGGA+AGG | + | chr3_4:63217388-63217407 | Msa0513070:CDS | 40.0% | |
CTCAGAGTCTTTCTCATTGA+AGG | - | chr3_4:63217488-63217507 | None:intergenic | 40.0% | |
! | CTGTTAGCTTAAGCACACAA+AGG | - | chr3_4:63217564-63217583 | None:intergenic | 40.0% |
CTTTGTGTGCTTAAGCTAAC+AGG | + | chr3_4:63217562-63217581 | Msa0513070:CDS | 40.0% | |
! | TATTTTCTCACAGTGGAGGA+AGG | + | chr3_4:63217612-63217631 | Msa0513070:CDS | 40.0% |
CGTAGAAGCAACTTCGTAAA+AGG | - | chr3_4:63217728-63217747 | None:intergenic | 40.0% | |
CTTTACTTTGAGTCGGTACA+GGG | - | chr3_4:63217891-63217910 | None:intergenic | 40.0% | |
!! | CTGTACCGACTCAAAGTAAA+GGG | + | chr3_4:63217890-63217909 | Msa0513070:CDS | 40.0% |
!!! | CACTTCCTTGGCTTCTTTTT+TGG | - | chr3_4:63217984-63218003 | None:intergenic | 40.0% |
CAAAAAAGAAGCCAAGGAAG+TGG | + | chr3_4:63217982-63218001 | Msa0513070:CDS | 40.0% | |
CTTGCAATTTAGATGCACAC+AGG | - | chr3_4:63218102-63218121 | None:intergenic | 40.0% | |
TTTAGGAGGAATGAACATGG+TGG | + | chr3_4:63218276-63218295 | Msa0513070:CDS | 40.0% | |
!!! | TCCAGTGCTCTTTAGTTTTC+TGG | + | chr3_4:63218370-63218389 | Msa0513070:intron | 40.0% |
! | TCCAGAAAACTAAAGAGCAC+TGG | - | chr3_4:63218374-63218393 | None:intergenic | 40.0% |
ACACCATGATTCATGACTTG+AGG | - | chr3_4:63218454-63218473 | None:intergenic | 40.0% | |
AAGAGTTATGCCCGGTCTAT+AGG | + | chr3_4:63216014-63216033 | Msa0513070:CDS | 45.0% | |
! | TATGCCCGGTCTATAGGTTT+TGG | + | chr3_4:63216020-63216039 | Msa0513070:CDS | 45.0% |
!! | CATTCAATCTAGCCTTGCAC+TGG | - | chr3_4:63216172-63216191 | None:intergenic | 45.0% |
TGGATCCTCGTTTGAAAAGG+AGG | + | chr3_4:63216297-63216316 | Msa0513070:CDS | 45.0% | |
! | CATTTGGTGAAAAGGACCGT+AGG | + | chr3_4:63216405-63216424 | Msa0513070:CDS | 45.0% |
CCAACAACACAGATTGACCA+TGG | - | chr3_4:63216697-63216716 | None:intergenic | 45.0% | |
CCATGGTCAATCTGTGTTGT+TGG | + | chr3_4:63216694-63216713 | Msa0513070:CDS | 45.0% | |
ATGTGCTTTACTGTCAAGCG+AGG | + | chr3_4:63216718-63216737 | Msa0513070:CDS | 45.0% | |
TTGGCTGTTCACAACATGGT+TGG | + | chr3_4:63216757-63216776 | Msa0513070:CDS | 45.0% | |
ACATGGTTGGAATGCATGCA+TGG | + | chr3_4:63216770-63216789 | Msa0513070:CDS | 45.0% | |
TATGCCACAAACACCATCGA+TGG | - | chr3_4:63216874-63216893 | None:intergenic | 45.0% | |
!! | GAGTGTCTACCTAGCTTTTC+TGG | - | chr3_4:63216911-63216930 | None:intergenic | 45.0% |
! | TGTGAGAGACACATTTTGGG+CGG | + | chr3_4:63217096-63217115 | Msa0513070:CDS | 45.0% |
CACAGTGGAGGAAGGATATA+AGG | + | chr3_4:63217620-63217639 | Msa0513070:CDS | 45.0% | |
TTCAGGGCATGTTTCTTGAG+AGG | - | chr3_4:63217818-63217837 | None:intergenic | 45.0% | |
CCTTTACTTTGAGTCGGTAC+AGG | - | chr3_4:63217892-63217911 | None:intergenic | 45.0% | |
!! | CCTGTACCGACTCAAAGTAA+AGG | + | chr3_4:63217889-63217908 | Msa0513070:CDS | 45.0% |
!! | GAGGACTTCCTTTTTGAAGG+AGG | - | chr3_4:63217919-63217938 | None:intergenic | 45.0% |
AGGACCCAAAAAAGAAGCCA+AGG | + | chr3_4:63217976-63217995 | Msa0513070:CDS | 45.0% | |
!!! | AGGGGGGACACATTAGTTTT+AGG | + | chr3_4:63218259-63218278 | Msa0513070:intron | 45.0% |
!!! | GGGGACACATTAGTTTTAGG+AGG | + | chr3_4:63218262-63218281 | Msa0513070:CDS | 45.0% |
!! | CGTGTTATTGATGACGACGA+TGG | - | chr3_4:63218609-63218628 | None:intergenic | 45.0% |
TTTGGGCAGATGCGAGATGT+AGG | + | chr3_4:63216573-63216592 | Msa0513070:CDS | 50.0% | |
TTGGGCAGATGCGAGATGTA+GGG | + | chr3_4:63216574-63216593 | Msa0513070:CDS | 50.0% | |
TTCCAAAAGCTCGCCATCGA+TGG | + | chr3_4:63216858-63216877 | Msa0513070:CDS | 50.0% | |
! | GTGAGAGACACATTTTGGGC+GGG | + | chr3_4:63217097-63217116 | Msa0513070:CDS | 50.0% |
GGAGGAAGGATATAAGGCGA+AGG | + | chr3_4:63217626-63217645 | Msa0513070:CDS | 50.0% | |
GGACGCCCTTTACTTTGAGT+CGG | - | chr3_4:63217898-63217917 | None:intergenic | 50.0% | |
!! | AAGGGCGTCCTCCTTCAAAA+AGG | + | chr3_4:63217908-63217927 | Msa0513070:CDS | 50.0% |
AAAGTGCGGAGACTGCGACT+TGG | + | chr3_4:63216440-63216459 | Msa0513070:CDS | 55.0% | |
AAGTGCGGAGACTGCGACTT+GGG | + | chr3_4:63216441-63216460 | Msa0513070:CDS | 55.0% | |
ACTTGGGGTTGGAGATGCTG+AGG | + | chr3_4:63216457-63216476 | Msa0513070:CDS | 55.0% | |
! | CACCATCGATGGCGAGCTTT+TGG | - | chr3_4:63216863-63216882 | None:intergenic | 55.0% |
CTCGCCATCGATGGTGTTTG+TGG | + | chr3_4:63216867-63216886 | Msa0513070:CDS | 55.0% | |
AGTGCGGAGACTGCGACTTG+GGG | + | chr3_4:63216442-63216461 | Msa0513070:CDS | 60.0% | |
! | CGGAGACTGCGACTTGGGGT+TGG | + | chr3_4:63216446-63216465 | Msa0513070:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 63215864 | 63218638 | 63215864 | ID=Msa0513070;Name=Msa0513070 |
chr3_4 | mRNA | 63215864 | 63218638 | 63215864 | ID=Msa0513070-mRNA-1;Parent=Msa0513070;Name=Msa0513070-mRNA-1;_AED=0.24;_eAED=0.41;_QI=0|0|0|0.6|1|0.8|5|0|813 |
chr3_4 | exon | 63215864 | 63218026 | 63215864 | ID=Msa0513070-mRNA-1:exon:15771;Parent=Msa0513070-mRNA-1 |
chr3_4 | exon | 63218097 | 63218168 | 63218097 | ID=Msa0513070-mRNA-1:exon:15772;Parent=Msa0513070-mRNA-1 |
chr3_4 | exon | 63218261 | 63218356 | 63218261 | ID=Msa0513070-mRNA-1:exon:15773;Parent=Msa0513070-mRNA-1 |
chr3_4 | exon | 63218439 | 63218495 | 63218439 | ID=Msa0513070-mRNA-1:exon:15774;Parent=Msa0513070-mRNA-1 |
chr3_4 | exon | 63218585 | 63218638 | 63218585 | ID=Msa0513070-mRNA-1:exon:15775;Parent=Msa0513070-mRNA-1 |
chr3_4 | CDS | 63215864 | 63218026 | 63215864 | ID=Msa0513070-mRNA-1:cds;Parent=Msa0513070-mRNA-1 |
chr3_4 | CDS | 63218097 | 63218168 | 63218097 | ID=Msa0513070-mRNA-1:cds;Parent=Msa0513070-mRNA-1 |
chr3_4 | CDS | 63218261 | 63218356 | 63218261 | ID=Msa0513070-mRNA-1:cds;Parent=Msa0513070-mRNA-1 |
chr3_4 | CDS | 63218439 | 63218495 | 63218439 | ID=Msa0513070-mRNA-1:cds;Parent=Msa0513070-mRNA-1 |
chr3_4 | CDS | 63218585 | 63218638 | 63218585 | ID=Msa0513070-mRNA-1:cds;Parent=Msa0513070-mRNA-1 |
Gene Sequence |
Protein sequence |