Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513210 | AES71639.2 | 70.796 | 113 | 31 | 1 | 48 | 158 | 343 | 455 | 3.62e-45 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513210 | sp|O22808|LYK5_ARATH | 43.902 | 123 | 62 | 4 | 36 | 155 | 345 | 463 | 8.71e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513210 | G7J6Q7 | 70.796 | 113 | 31 | 1 | 48 | 158 | 343 | 455 | 1.73e-45 | 167 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513210 | MtrunA17_Chr3g0119351 | 70.796 | 113 | 31 | 1 | 48 | 158 | 366 | 478 | 7.48e-49 | 167 |
| Msa0513210 | MtrunA17_Chr5g0439334 | 57.391 | 115 | 41 | 3 | 48 | 155 | 341 | 454 | 1.18e-33 | 124 |
| Msa0513210 | MtrunA17_Chr5g0403381 | 37.615 | 109 | 64 | 3 | 50 | 155 | 344 | 451 | 5.65e-17 | 77.0 |
| Msa0513210 | MtrunA17_Chr1g0154511 | 35.652 | 115 | 57 | 3 | 50 | 155 | 332 | 438 | 1.99e-14 | 69.7 |
| Msa0513210 | MtrunA17_Chr5g0418011 | 33.628 | 113 | 67 | 4 | 50 | 158 | 18 | 126 | 4.30e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513210 | AT2G33580.1 | 43.902 | 123 | 62 | 4 | 36 | 155 | 345 | 463 | 8.85e-26 | 102 |
| Msa0513210 | AT2G23770.1 | 42.727 | 110 | 56 | 3 | 48 | 155 | 341 | 445 | 7.44e-16 | 74.3 |
| Msa0513210 | AT3G59740.1 | 34.454 | 119 | 63 | 5 | 51 | 154 | 321 | 439 | 4.71e-13 | 66.2 |
| Msa0513210 | AT3G59750.1 | 33.898 | 118 | 62 | 5 | 51 | 154 | 291 | 406 | 4.17e-12 | 63.5 |
| Msa0513210 | AT3G59730.1 | 33.613 | 119 | 64 | 5 | 51 | 154 | 323 | 441 | 4.47e-12 | 63.2 |
| Msa0513210 | AT3G59700.1 | 33.051 | 118 | 63 | 5 | 51 | 154 | 326 | 441 | 4.96e-12 | 63.2 |
| Msa0513210 | AT5G15730.3 | 29.630 | 135 | 80 | 5 | 33 | 155 | 86 | 217 | 2.79e-11 | 60.8 |
| Msa0513210 | AT5G15730.2 | 29.630 | 135 | 80 | 5 | 33 | 155 | 86 | 217 | 2.79e-11 | 60.8 |
Find 34 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTACAAGTTTACTGATAA+TGG | 0.203217 | 3_4:+63486352 | Msa0513210:CDS |
| CAATGAGAATCATGGGTTAT+TGG | 0.233075 | 3_4:+63485505 | Msa0513210:CDS |
| TGAACTTATTGCTGAGCTTT+TGG | 0.256791 | 3_4:+63486100 | Msa0513210:CDS |
| ACCAACATTACAAGACTATC+TGG | 0.292649 | 3_4:+63486298 | Msa0513210:CDS |
| AATGAGAATCATGGGTTATT+GGG | 0.300066 | 3_4:+63485506 | Msa0513210:CDS |
| TGGTGAAGCTAAGAGAATAA+AGG | 0.333062 | 3_4:+63486172 | Msa0513210:CDS |
| ATTCAAAGCATCAGCAAATT+CGG | 0.386438 | 3_4:-63486454 | None:intergenic |
| GGTGAAGCTAAGAGAATAAA+GGG | 0.388760 | 3_4:+63486173 | Msa0513210:CDS |
| TCTCAAAGGTGGTGTCTCTA+TGG | 0.390419 | 3_4:+63486246 | Msa0513210:CDS |
| CACATATTCAATGAGAATCA+TGG | 0.400064 | 3_4:+63485497 | Msa0513210:CDS |
| CTATGGAGATGAACACTCTA+AGG | 0.422917 | 3_4:+63486263 | Msa0513210:CDS |
| AGTAAACTTGTAGAAAAGAT+AGG | 0.427499 | 3_4:-63486344 | None:intergenic |
| TAAACTCTGTGGCACTAACT+TGG | 0.449308 | 3_4:+63486410 | Msa0513210:CDS |
| GTTGACAGTGTATAACTTTG+AGG | 0.455061 | 3_4:+63486124 | Msa0513210:CDS |
| TGCCACAGAGTTTAAGCACT+TGG | 0.478629 | 3_4:-63486401 | None:intergenic |
| CCCAGATAGTCTTGTAATGT+TGG | 0.485149 | 3_4:-63486299 | None:intergenic |
| GCTTTACCGAGCATGCTTGA+AGG | 0.504446 | 3_4:+63486202 | Msa0513210:CDS |
| AAATGTGCTTAGTGCGGGTA+GGG | 0.519781 | 3_4:+63485424 | None:intergenic |
| CTTTACCGAGCATGCTTGAA+GGG | 0.532381 | 3_4:+63486203 | Msa0513210:CDS |
| ACATATTCAATGAGAATCAT+GGG | 0.534745 | 3_4:+63485498 | Msa0513210:CDS |
| ATAGAAAATGTGCTTAGTGC+GGG | 0.558683 | 3_4:+63485419 | None:intergenic |
| CAGTACCCTTCAAGCATGCT+CGG | 0.561849 | 3_4:-63486208 | None:intergenic |
| TGCAGTAAGGTTCTCAAAGG+TGG | 0.582548 | 3_4:+63486235 | Msa0513210:intron |
| CCAACATTACAAGACTATCT+GGG | 0.600008 | 3_4:+63486299 | Msa0513210:CDS |
| AGTCCACAAATGCAATGAGA+GGG | 0.601130 | 3_4:+63485458 | Msa0513210:CDS |
| AAGTCCACAAATGCAATGAG+AGG | 0.614763 | 3_4:+63485457 | Msa0513210:CDS |
| TATAGAAAATGTGCTTAGTG+CGG | 0.614939 | 3_4:+63485418 | None:intergenic |
| TACCAAGTGCTTAAACTCTG+TGG | 0.616015 | 3_4:+63486399 | Msa0513210:CDS |
| TTCTGCAGTAAGGTTCTCAA+AGG | 0.630600 | 3_4:+63486232 | Msa0513210:intron |
| AAAATGTGCTTAGTGCGGGT+AGG | 0.633764 | 3_4:+63485423 | None:intergenic |
| GTCCACAAATGCAATGAGAG+GGG | 0.648680 | 3_4:+63485459 | Msa0513210:CDS |
| ATAGTCTTGTAATGTTGGTG+TGG | 0.652410 | 3_4:-63486294 | None:intergenic |
| TCCACAAATGCAATGAGAGG+GGG | 0.669172 | 3_4:+63485460 | Msa0513210:CDS |
| TCTGGGTTCTGTGTACACAA+AGG | 0.691227 | 3_4:+63486316 | Msa0513210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTACCATATGAATAGT+TGG | - | chr3_4:63485644-63485663 | None:intergenic | 20.0% |
| !! | AATATTACCATATGAATAGT+TGG | - | chr3_4:63485644-63485663 | None:intergenic | 20.0% |
| ! | ACATATTCAATGAGAATCAT+GGG | + | chr3_4:63485498-63485517 | Msa0513210:CDS | 25.0% |
| ! | ATTGATGCTCAGAATATATA+TGG | + | chr3_4:63485947-63485966 | Msa0513210:intron | 25.0% |
| ! | AGTAAACTTGTAGAAAAGAT+AGG | - | chr3_4:63486347-63486366 | None:intergenic | 25.0% |
| ! | TTCTACAAGTTTACTGATAA+TGG | + | chr3_4:63486352-63486371 | Msa0513210:CDS | 25.0% |
| ! | ACATATTCAATGAGAATCAT+GGG | + | chr3_4:63485498-63485517 | Msa0513210:CDS | 25.0% |
| ! | ATTGATGCTCAGAATATATA+TGG | + | chr3_4:63485947-63485966 | Msa0513210:intron | 25.0% |
| ! | AGTAAACTTGTAGAAAAGAT+AGG | - | chr3_4:63486347-63486366 | None:intergenic | 25.0% |
| ! | TTCTACAAGTTTACTGATAA+TGG | + | chr3_4:63486352-63486371 | Msa0513210:CDS | 25.0% |
| CACATATTCAATGAGAATCA+TGG | + | chr3_4:63485497-63485516 | Msa0513210:CDS | 30.0% | |
| ! | AATGAGAATCATGGGTTATT+GGG | + | chr3_4:63485506-63485525 | Msa0513210:CDS | 30.0% |
| TTACCATATGAATAGTTGGA+GGG | - | chr3_4:63485640-63485659 | None:intergenic | 30.0% | |
| ATTACCATATGAATAGTTGG+AGG | - | chr3_4:63485641-63485660 | None:intergenic | 30.0% | |
| TCAAGAGATAAGATAAGCTA+TGG | - | chr3_4:63485721-63485740 | None:intergenic | 30.0% | |
| ! | ATCTGAAATATTGTTGGCAT+TGG | - | chr3_4:63485765-63485784 | None:intergenic | 30.0% |
| AATGCCAACAATATTTCAGA+TGG | + | chr3_4:63485764-63485783 | Msa0513210:intron | 30.0% | |
| !!! | CATAAGACAACTAGCTTTTT+TGG | + | chr3_4:63486152-63486171 | Msa0513210:CDS | 30.0% |
| CACATATTCAATGAGAATCA+TGG | + | chr3_4:63485497-63485516 | Msa0513210:CDS | 30.0% | |
| ! | AATGAGAATCATGGGTTATT+GGG | + | chr3_4:63485506-63485525 | Msa0513210:CDS | 30.0% |
| TTACCATATGAATAGTTGGA+GGG | - | chr3_4:63485640-63485659 | None:intergenic | 30.0% | |
| ATTACCATATGAATAGTTGG+AGG | - | chr3_4:63485641-63485660 | None:intergenic | 30.0% | |
| TCAAGAGATAAGATAAGCTA+TGG | - | chr3_4:63485721-63485740 | None:intergenic | 30.0% | |
| ! | ATCTGAAATATTGTTGGCAT+TGG | - | chr3_4:63485765-63485784 | None:intergenic | 30.0% |
| AATGCCAACAATATTTCAGA+TGG | + | chr3_4:63485764-63485783 | Msa0513210:intron | 30.0% | |
| !!! | CATAAGACAACTAGCTTTTT+TGG | + | chr3_4:63486152-63486171 | Msa0513210:CDS | 30.0% |
| ! | CAATGAGAATCATGGGTTAT+TGG | + | chr3_4:63485505-63485524 | Msa0513210:CDS | 35.0% |
| !! | AGATTTTGTTTGTGGGATGT+GGG | - | chr3_4:63485575-63485594 | None:intergenic | 35.0% |
| !! | CTTGCTGAGATTTTGTTTGT+GGG | - | chr3_4:63485582-63485601 | None:intergenic | 35.0% |
| !! | TCTTGCTGAGATTTTGTTTG+TGG | - | chr3_4:63485583-63485602 | None:intergenic | 35.0% |
| TACCATATGAATAGTTGGAG+GGG | - | chr3_4:63485639-63485658 | None:intergenic | 35.0% | |
| !! | TTGAGTAGGGTTTGATTTGA+AGG | - | chr3_4:63485682-63485701 | None:intergenic | 35.0% |
| CTGGAATGTTGTATTGAGTA+GGG | - | chr3_4:63485695-63485714 | None:intergenic | 35.0% | |
| AGAGATAAGATAAGCTATGG+TGG | - | chr3_4:63485718-63485737 | None:intergenic | 35.0% | |
| ! | GTCTCCATCTGAAATATTGT+TGG | - | chr3_4:63485771-63485790 | None:intergenic | 35.0% |
| ! | ATTTTCCATTTGCTTGGAGA+TGG | - | chr3_4:63486029-63486048 | None:intergenic | 35.0% |
| ATCTCCAAGCAAATGGAAAA+TGG | + | chr3_4:63486028-63486047 | Msa0513210:intron | 35.0% | |
| ! | GAATCCATTTTCCATTTGCT+TGG | - | chr3_4:63486035-63486054 | None:intergenic | 35.0% |
| CTTACATACTTGATCTCTGA+AGG | + | chr3_4:63486064-63486083 | Msa0513210:intron | 35.0% | |
| ! | TGAACTTATTGCTGAGCTTT+TGG | + | chr3_4:63486100-63486119 | Msa0513210:CDS | 35.0% |
| GTTGACAGTGTATAACTTTG+AGG | + | chr3_4:63486124-63486143 | Msa0513210:CDS | 35.0% | |
| TGGTGAAGCTAAGAGAATAA+AGG | + | chr3_4:63486172-63486191 | Msa0513210:CDS | 35.0% | |
| GGTGAAGCTAAGAGAATAAA+GGG | + | chr3_4:63486173-63486192 | Msa0513210:CDS | 35.0% | |
| !! | ATAGTCTTGTAATGTTGGTG+TGG | - | chr3_4:63486297-63486316 | None:intergenic | 35.0% |
| ACCAACATTACAAGACTATC+TGG | + | chr3_4:63486298-63486317 | Msa0513210:CDS | 35.0% | |
| CCAACATTACAAGACTATCT+GGG | + | chr3_4:63486299-63486318 | Msa0513210:CDS | 35.0% | |
| ! | CAATGAGAATCATGGGTTAT+TGG | + | chr3_4:63485505-63485524 | Msa0513210:CDS | 35.0% |
| !! | AGATTTTGTTTGTGGGATGT+GGG | - | chr3_4:63485575-63485594 | None:intergenic | 35.0% |
| !! | CTTGCTGAGATTTTGTTTGT+GGG | - | chr3_4:63485582-63485601 | None:intergenic | 35.0% |
| !! | TCTTGCTGAGATTTTGTTTG+TGG | - | chr3_4:63485583-63485602 | None:intergenic | 35.0% |
| TACCATATGAATAGTTGGAG+GGG | - | chr3_4:63485639-63485658 | None:intergenic | 35.0% | |
| !! | TTGAGTAGGGTTTGATTTGA+AGG | - | chr3_4:63485682-63485701 | None:intergenic | 35.0% |
| CTGGAATGTTGTATTGAGTA+GGG | - | chr3_4:63485695-63485714 | None:intergenic | 35.0% | |
| AGAGATAAGATAAGCTATGG+TGG | - | chr3_4:63485718-63485737 | None:intergenic | 35.0% | |
| ! | GTCTCCATCTGAAATATTGT+TGG | - | chr3_4:63485771-63485790 | None:intergenic | 35.0% |
| ! | ATTTTCCATTTGCTTGGAGA+TGG | - | chr3_4:63486029-63486048 | None:intergenic | 35.0% |
| ATCTCCAAGCAAATGGAAAA+TGG | + | chr3_4:63486028-63486047 | Msa0513210:intron | 35.0% | |
| ! | GAATCCATTTTCCATTTGCT+TGG | - | chr3_4:63486035-63486054 | None:intergenic | 35.0% |
| CTTACATACTTGATCTCTGA+AGG | + | chr3_4:63486064-63486083 | Msa0513210:intron | 35.0% | |
| ! | TGAACTTATTGCTGAGCTTT+TGG | + | chr3_4:63486100-63486119 | Msa0513210:CDS | 35.0% |
| GTTGACAGTGTATAACTTTG+AGG | + | chr3_4:63486124-63486143 | Msa0513210:CDS | 35.0% | |
| TGGTGAAGCTAAGAGAATAA+AGG | + | chr3_4:63486172-63486191 | Msa0513210:CDS | 35.0% | |
| GGTGAAGCTAAGAGAATAAA+GGG | + | chr3_4:63486173-63486192 | Msa0513210:CDS | 35.0% | |
| !! | ATAGTCTTGTAATGTTGGTG+TGG | - | chr3_4:63486297-63486316 | None:intergenic | 35.0% |
| ACCAACATTACAAGACTATC+TGG | + | chr3_4:63486298-63486317 | Msa0513210:CDS | 35.0% | |
| CCAACATTACAAGACTATCT+GGG | + | chr3_4:63486299-63486318 | Msa0513210:CDS | 35.0% | |
| AAGTCCACAAATGCAATGAG+AGG | + | chr3_4:63485457-63485476 | Msa0513210:CDS | 40.0% | |
| AGTCCACAAATGCAATGAGA+GGG | + | chr3_4:63485458-63485477 | Msa0513210:CDS | 40.0% | |
| !! | GAGATTTTGTTTGTGGGATG+TGG | - | chr3_4:63485576-63485595 | None:intergenic | 40.0% |
| !! | TAGGGTTTGATTTGAAGGTG+AGG | - | chr3_4:63485677-63485696 | None:intergenic | 40.0% |
| GCTGGAATGTTGTATTGAGT+AGG | - | chr3_4:63485696-63485715 | None:intergenic | 40.0% | |
| ATAAGATAAGCTATGGTGGC+TGG | - | chr3_4:63485714-63485733 | None:intergenic | 40.0% | |
| CAAAACAAACGCAGTTCACT+AGG | - | chr3_4:63485823-63485842 | None:intergenic | 40.0% | |
| ! | CTAGTGAACTGCGTTTGTTT+TGG | + | chr3_4:63485821-63485840 | Msa0513210:intron | 40.0% |
| AGATGTATCAGGAATTGTGC+TGG | - | chr3_4:63485856-63485875 | None:intergenic | 40.0% | |
| CTCAGTCTTCAAGATGTATC+AGG | - | chr3_4:63485867-63485886 | None:intergenic | 40.0% | |
| CTGATACATCTTGAAGACTG+AGG | + | chr3_4:63485865-63485884 | Msa0513210:intron | 40.0% | |
| TCAATTTGCATGTTCCACTC+AGG | + | chr3_4:63485993-63486012 | Msa0513210:intron | 40.0% | |
| TTCTGCAGTAAGGTTCTCAA+AGG | + | chr3_4:63486232-63486251 | Msa0513210:intron | 40.0% | |
| CTATGGAGATGAACACTCTA+AGG | + | chr3_4:63486263-63486282 | Msa0513210:CDS | 40.0% | |
| !! | CCCAGATAGTCTTGTAATGT+TGG | - | chr3_4:63486302-63486321 | None:intergenic | 40.0% |
| TACCAAGTGCTTAAACTCTG+TGG | + | chr3_4:63486399-63486418 | Msa0513210:CDS | 40.0% | |
| TAAACTCTGTGGCACTAACT+TGG | + | chr3_4:63486410-63486429 | Msa0513210:CDS | 40.0% | |
| AAGTCCACAAATGCAATGAG+AGG | + | chr3_4:63485457-63485476 | Msa0513210:CDS | 40.0% | |
| AGTCCACAAATGCAATGAGA+GGG | + | chr3_4:63485458-63485477 | Msa0513210:CDS | 40.0% | |
| !! | GAGATTTTGTTTGTGGGATG+TGG | - | chr3_4:63485576-63485595 | None:intergenic | 40.0% |
| !! | TAGGGTTTGATTTGAAGGTG+AGG | - | chr3_4:63485677-63485696 | None:intergenic | 40.0% |
| GCTGGAATGTTGTATTGAGT+AGG | - | chr3_4:63485696-63485715 | None:intergenic | 40.0% | |
| ATAAGATAAGCTATGGTGGC+TGG | - | chr3_4:63485714-63485733 | None:intergenic | 40.0% | |
| CAAAACAAACGCAGTTCACT+AGG | - | chr3_4:63485823-63485842 | None:intergenic | 40.0% | |
| ! | CTAGTGAACTGCGTTTGTTT+TGG | + | chr3_4:63485821-63485840 | Msa0513210:intron | 40.0% |
| AGATGTATCAGGAATTGTGC+TGG | - | chr3_4:63485856-63485875 | None:intergenic | 40.0% | |
| CTCAGTCTTCAAGATGTATC+AGG | - | chr3_4:63485867-63485886 | None:intergenic | 40.0% | |
| CTGATACATCTTGAAGACTG+AGG | + | chr3_4:63485865-63485884 | Msa0513210:intron | 40.0% | |
| TCAATTTGCATGTTCCACTC+AGG | + | chr3_4:63485993-63486012 | Msa0513210:intron | 40.0% | |
| TTCTGCAGTAAGGTTCTCAA+AGG | + | chr3_4:63486232-63486251 | Msa0513210:intron | 40.0% | |
| CTATGGAGATGAACACTCTA+AGG | + | chr3_4:63486263-63486282 | Msa0513210:CDS | 40.0% | |
| !! | CCCAGATAGTCTTGTAATGT+TGG | - | chr3_4:63486302-63486321 | None:intergenic | 40.0% |
| TACCAAGTGCTTAAACTCTG+TGG | + | chr3_4:63486399-63486418 | Msa0513210:CDS | 40.0% | |
| TAAACTCTGTGGCACTAACT+TGG | + | chr3_4:63486410-63486429 | Msa0513210:CDS | 40.0% | |
| GTCCACAAATGCAATGAGAG+GGG | + | chr3_4:63485459-63485478 | Msa0513210:CDS | 45.0% | |
| TCCACAAATGCAATGAGAGG+GGG | + | chr3_4:63485460-63485479 | Msa0513210:CDS | 45.0% | |
| GTCCCCTCCAACTATTCATA+TGG | + | chr3_4:63485634-63485653 | Msa0513210:intron | 45.0% | |
| !! | TGTTGGCATTGGCTATGAGA+GGG | - | chr3_4:63485754-63485773 | None:intergenic | 45.0% |
| !! | TTGTTGGCATTGGCTATGAG+AGG | - | chr3_4:63485755-63485774 | None:intergenic | 45.0% |
| GTTCACTAGGACAGTGATCA+CGG | - | chr3_4:63485810-63485829 | None:intergenic | 45.0% | |
| TCTTGCCAACAACACCTATG+AGG | + | chr3_4:63485904-63485923 | Msa0513210:intron | 45.0% | |
| ACATGTTGTGAGTGCCTCAT+AGG | - | chr3_4:63485921-63485940 | None:intergenic | 45.0% | |
| GATTCACAAACCTCGCTTCA+AGG | + | chr3_4:63485969-63485988 | Msa0513210:intron | 45.0% | |
| TTGGTCCATCTCCAAGCAAA+TGG | + | chr3_4:63486021-63486040 | Msa0513210:intron | 45.0% | |
| CTTTACCGAGCATGCTTGAA+GGG | + | chr3_4:63486203-63486222 | Msa0513210:CDS | 45.0% | |
| TGCAGTAAGGTTCTCAAAGG+TGG | + | chr3_4:63486235-63486254 | Msa0513210:intron | 45.0% | |
| TCTCAAAGGTGGTGTCTCTA+TGG | + | chr3_4:63486246-63486265 | Msa0513210:CDS | 45.0% | |
| TCTGGGTTCTGTGTACACAA+AGG | + | chr3_4:63486316-63486335 | Msa0513210:CDS | 45.0% | |
| TGCCACAGAGTTTAAGCACT+TGG | - | chr3_4:63486404-63486423 | None:intergenic | 45.0% | |
| GTCCACAAATGCAATGAGAG+GGG | + | chr3_4:63485459-63485478 | Msa0513210:CDS | 45.0% | |
| TCCACAAATGCAATGAGAGG+GGG | + | chr3_4:63485460-63485479 | Msa0513210:CDS | 45.0% | |
| GTCCCCTCCAACTATTCATA+TGG | + | chr3_4:63485634-63485653 | Msa0513210:intron | 45.0% | |
| !! | TGTTGGCATTGGCTATGAGA+GGG | - | chr3_4:63485754-63485773 | None:intergenic | 45.0% |
| !! | TTGTTGGCATTGGCTATGAG+AGG | - | chr3_4:63485755-63485774 | None:intergenic | 45.0% |
| GTTCACTAGGACAGTGATCA+CGG | - | chr3_4:63485810-63485829 | None:intergenic | 45.0% | |
| TCTTGCCAACAACACCTATG+AGG | + | chr3_4:63485904-63485923 | Msa0513210:intron | 45.0% | |
| ACATGTTGTGAGTGCCTCAT+AGG | - | chr3_4:63485921-63485940 | None:intergenic | 45.0% | |
| GATTCACAAACCTCGCTTCA+AGG | + | chr3_4:63485969-63485988 | Msa0513210:intron | 45.0% | |
| TTGGTCCATCTCCAAGCAAA+TGG | + | chr3_4:63486021-63486040 | Msa0513210:intron | 45.0% | |
| CTTTACCGAGCATGCTTGAA+GGG | + | chr3_4:63486203-63486222 | Msa0513210:CDS | 45.0% | |
| TGCAGTAAGGTTCTCAAAGG+TGG | + | chr3_4:63486235-63486254 | Msa0513210:intron | 45.0% | |
| TCTCAAAGGTGGTGTCTCTA+TGG | + | chr3_4:63486246-63486265 | Msa0513210:CDS | 45.0% | |
| TCTGGGTTCTGTGTACACAA+AGG | + | chr3_4:63486316-63486335 | Msa0513210:CDS | 45.0% | |
| TGCCACAGAGTTTAAGCACT+TGG | - | chr3_4:63486404-63486423 | None:intergenic | 45.0% | |
| ACCCCCTCTCATTGCATTTG+TGG | - | chr3_4:63485464-63485483 | None:intergenic | 50.0% | |
| ATTGGCTATGAGAGGGACTG+TGG | - | chr3_4:63485747-63485766 | None:intergenic | 50.0% | |
| ! | TCACGGTGTCAGTCGGAATA+GGG | - | chr3_4:63485793-63485812 | None:intergenic | 50.0% |
| ! | ATCACGGTGTCAGTCGGAAT+AGG | - | chr3_4:63485794-63485813 | None:intergenic | 50.0% |
| ! | ACAGTGATCACGGTGTCAGT+CGG | - | chr3_4:63485800-63485819 | None:intergenic | 50.0% |
| ! | GAGTGCCTCATAGGTGTTGT+TGG | - | chr3_4:63485912-63485931 | None:intergenic | 50.0% |
| ! | TGAGGCACTCACAACATGTC+AGG | + | chr3_4:63485922-63485941 | Msa0513210:intron | 50.0% |
| GCAAATTGAGCCTTGAAGCG+AGG | - | chr3_4:63485982-63486001 | None:intergenic | 50.0% | |
| ATGTTCCACTCAGGTGTGCT+TGG | + | chr3_4:63486002-63486021 | Msa0513210:intron | 50.0% | |
| GCTTTACCGAGCATGCTTGA+AGG | + | chr3_4:63486202-63486221 | Msa0513210:CDS | 50.0% | |
| CAGTACCCTTCAAGCATGCT+CGG | - | chr3_4:63486211-63486230 | None:intergenic | 50.0% | |
| !! | AGGGTACTGCTTCTGCAGTA+AGG | + | chr3_4:63486222-63486241 | Msa0513210:intron | 50.0% |
| ACCCCCTCTCATTGCATTTG+TGG | - | chr3_4:63485464-63485483 | None:intergenic | 50.0% | |
| ATTGGCTATGAGAGGGACTG+TGG | - | chr3_4:63485747-63485766 | None:intergenic | 50.0% | |
| ! | TCACGGTGTCAGTCGGAATA+GGG | - | chr3_4:63485793-63485812 | None:intergenic | 50.0% |
| ! | ATCACGGTGTCAGTCGGAAT+AGG | - | chr3_4:63485794-63485813 | None:intergenic | 50.0% |
| ! | ACAGTGATCACGGTGTCAGT+CGG | - | chr3_4:63485800-63485819 | None:intergenic | 50.0% |
| ! | GAGTGCCTCATAGGTGTTGT+TGG | - | chr3_4:63485912-63485931 | None:intergenic | 50.0% |
| ! | TGAGGCACTCACAACATGTC+AGG | + | chr3_4:63485922-63485941 | Msa0513210:intron | 50.0% |
| GCAAATTGAGCCTTGAAGCG+AGG | - | chr3_4:63485982-63486001 | None:intergenic | 50.0% | |
| ATGTTCCACTCAGGTGTGCT+TGG | + | chr3_4:63486002-63486021 | Msa0513210:intron | 50.0% | |
| GCTTTACCGAGCATGCTTGA+AGG | + | chr3_4:63486202-63486221 | Msa0513210:CDS | 50.0% | |
| CAGTACCCTTCAAGCATGCT+CGG | - | chr3_4:63486211-63486230 | None:intergenic | 50.0% | |
| !! | AGGGTACTGCTTCTGCAGTA+AGG | + | chr3_4:63486222-63486241 | Msa0513210:intron | 50.0% |
| ATGGACCAAGCACACCTGAG+TGG | - | chr3_4:63486010-63486029 | None:intergenic | 55.0% | |
| ATGGACCAAGCACACCTGAG+TGG | - | chr3_4:63486010-63486029 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 63485426 | 63486474 | 63485426 | ID=Msa0513210;Name=Msa0513210 |
| chr3_4 | mRNA | 63485426 | 63486474 | 63485426 | ID=Msa0513210-mRNA-1;Parent=Msa0513210;Name=Msa0513210-mRNA-1;_AED=0.21;_eAED=0.35;_QI=0|0|0|1|0|0|3|0|161 |
| chr3_4 | exon | 63485426 | 63485527 | 63485426 | ID=Msa0513210-mRNA-1:exon:15850;Parent=Msa0513210-mRNA-1 |
| chr3_4 | exon | 63486086 | 63486238 | 63486086 | ID=Msa0513210-mRNA-1:exon:15851;Parent=Msa0513210-mRNA-1 |
| chr3_4 | exon | 63486244 | 63486474 | 63486244 | ID=Msa0513210-mRNA-1:exon:15852;Parent=Msa0513210-mRNA-1 |
| chr3_4 | CDS | 63485426 | 63485527 | 63485426 | ID=Msa0513210-mRNA-1:cds;Parent=Msa0513210-mRNA-1 |
| chr3_4 | CDS | 63486086 | 63486238 | 63486086 | ID=Msa0513210-mRNA-1:cds;Parent=Msa0513210-mRNA-1 |
| chr3_4 | CDS | 63486244 | 63486474 | 63486244 | ID=Msa0513210-mRNA-1:cds;Parent=Msa0513210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
