Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514090 | AES71974.2 | 73.333 | 195 | 14 | 2 | 1 | 184 | 1 | 168 | 7.39e-56 | 192 |
| Msa0514090 | AES71974.2 | 91.129 | 124 | 11 | 0 | 206 | 329 | 106 | 229 | 5.00e-74 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514090 | G7JBB9 | 73.333 | 195 | 14 | 2 | 1 | 184 | 1 | 168 | 3.53e-56 | 192 |
| Msa0514090 | G7JBB9 | 91.129 | 124 | 11 | 0 | 206 | 329 | 106 | 229 | 2.39e-74 | 238 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0514090 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514090 | MtrunA17_Chr3g0122071 | 90.598 | 117 | 11 | 0 | 213 | 329 | 106 | 222 | 5.70e-73 | 225 |
| Msa0514090 | MtrunA17_Chr3g0122071 | 69.744 | 195 | 14 | 2 | 1 | 184 | 1 | 161 | 8.46e-54 | 176 |
| Msa0514090 | MtrunA17_Chr4g0064011 | 54.494 | 178 | 57 | 9 | 1 | 174 | 1 | 158 | 2.52e-42 | 146 |
| Msa0514090 | MtrunA17_Chr4g0064011 | 61.069 | 131 | 48 | 3 | 203 | 332 | 104 | 232 | 6.88e-39 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514090 | AT5G22990.1 | 51.807 | 83 | 40 | 0 | 220 | 302 | 232 | 314 | 1.02e-19 | 88.6 |
| Msa0514090 | AT5G22990.1 | 51.282 | 78 | 24 | 2 | 136 | 213 | 232 | 295 | 3.98e-16 | 78.6 |
| Msa0514090 | AT2G18490.1 | 53.425 | 73 | 33 | 1 | 207 | 279 | 142 | 213 | 6.15e-17 | 79.7 |
| Msa0514090 | AT2G18490.1 | 60.000 | 60 | 23 | 1 | 123 | 182 | 142 | 200 | 5.48e-15 | 73.9 |
| Msa0514090 | AT2G18490.2 | 53.425 | 73 | 33 | 1 | 207 | 279 | 192 | 263 | 7.52e-17 | 80.1 |
| Msa0514090 | AT2G18490.2 | 58.065 | 62 | 25 | 1 | 123 | 184 | 192 | 252 | 7.62e-15 | 74.3 |
| Msa0514090 | AT2G15740.1 | 52.564 | 78 | 32 | 2 | 209 | 286 | 219 | 291 | 1.14e-16 | 80.1 |
| Msa0514090 | AT2G15740.1 | 60.000 | 60 | 23 | 1 | 125 | 184 | 219 | 277 | 9.03e-16 | 77.4 |
| Msa0514090 | AT5G42640.1 | 52.113 | 71 | 29 | 2 | 213 | 279 | 218 | 287 | 3.16e-15 | 75.5 |
| Msa0514090 | AT5G42640.1 | 39.216 | 102 | 57 | 2 | 85 | 182 | 174 | 274 | 5.40e-13 | 68.9 |
Find 38 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATTAATATTTATATTAA+TGG | 0.098823 | 3_4:+64752726 | None:intergenic |
| TCAATTGGTACCAATAATTT+TGG | 0.136685 | 3_4:-64752838 | Msa0514090:CDS |
| AGCATGACTTCCAAAATTAT+TGG | 0.299809 | 3_4:+64752828 | None:intergenic |
| AGCCTACCTCACAAGAAATA+TGG | 0.344617 | 3_4:-64752126 | Msa0514090:CDS |
| AGCCTACCTCACAAGAAATA+TGG | 0.344617 | 3_4:-64752478 | Msa0514090:CDS |
| GAGATTCTTGAAGGTCAGTT+TGG | 0.349001 | 3_4:-64752784 | Msa0514090:CDS |
| ATCGTTCTTGTTCCGATGCA+TGG | 0.373109 | 3_4:+64752200 | None:intergenic |
| ATTTCTTGTGAGGTAGGCTA+TGG | 0.375103 | 3_4:+64752130 | None:intergenic |
| ATTTCTTGTGAGGTAGGCTA+TGG | 0.375103 | 3_4:+64752482 | None:intergenic |
| ACAATAATAGATTGTTTCAA+TGG | 0.400008 | 3_4:-64752894 | Msa0514090:CDS |
| TATTAATATTAATTATTTGA+AGG | 0.413280 | 3_4:+64751814 | None:intergenic |
| AGATTCTTGAAGGTCAGTTT+GGG | 0.424623 | 3_4:-64752783 | Msa0514090:CDS |
| TCGTTCTTGTTCCGATGCAT+GGG | 0.447785 | 3_4:+64752201 | None:intergenic |
| TTATCAGTACAAGCAATAAC+AGG | 0.454560 | 3_4:+64751919 | None:intergenic |
| ACTCATTCATCATCATCAAT+TGG | 0.471297 | 3_4:-64752853 | Msa0514090:CDS |
| AGCAATGAAAATATTGATGA+TGG | 0.472887 | 3_4:-64752159 | Msa0514090:CDS |
| AGCAATGAAAATATTGATGA+TGG | 0.472887 | 3_4:-64752511 | Msa0514090:CDS |
| ACATCTCCAACATCAGCAAC+AGG | 0.474279 | 3_4:+64752565 | None:intergenic |
| AATATTCCTGTTGCTGATGT+TGG | 0.486932 | 3_4:-64752571 | Msa0514090:CDS |
| TCTCATCTTGATCTCCGTGT+AGG | 0.496262 | 3_4:-64752634 | Msa0514090:CDS |
| AAAGCGATGGAGATTCTTGA+AGG | 0.521307 | 3_4:-64752793 | Msa0514090:CDS |
| CTCTTACCCCTCTTCCAAGT+GGG | 0.526442 | 3_4:-64751855 | Msa0514090:CDS |
| TTTCTTGTGAGGTAGGCTAT+GGG | 0.526908 | 3_4:+64752131 | None:intergenic |
| TTTCTTGTGAGGTAGGCTAT+GGG | 0.526908 | 3_4:+64752483 | None:intergenic |
| AGATTGTTTCAATGGATGCA+TGG | 0.544477 | 3_4:-64752886 | Msa0514090:CDS |
| ATGTTAACAAGAACGATATG+AGG | 0.552379 | 3_4:-64752546 | Msa0514090:CDS |
| GGAATATTAATCATTTGAGA+AGG | 0.562733 | 3_4:+64752586 | None:intergenic |
| ATCGGAACAAGAACGATATG+AGG | 0.569024 | 3_4:-64752194 | Msa0514090:CDS |
| TACGGTCCATATTTCTTGTG+AGG | 0.577081 | 3_4:+64752120 | None:intergenic |
| TACGGTCCATATTTCTTGTG+AGG | 0.577081 | 3_4:+64752472 | None:intergenic |
| GCTCTTACCCCTCTTCCAAG+TGG | 0.581741 | 3_4:-64751856 | Msa0514090:CDS |
| GTCCATATTTCTTGTGAGGT+AGG | 0.582227 | 3_4:+64752124 | None:intergenic |
| GTCCATATTTCTTGTGAGGT+AGG | 0.582227 | 3_4:+64752476 | None:intergenic |
| CAGATTCAAAAGCTCAATGA+CGG | 0.593887 | 3_4:-64751958 | Msa0514090:CDS |
| ATTGCTCTTACCCCATGCAT+CGG | 0.621144 | 3_4:-64752212 | Msa0514090:CDS |
| TCCGGGAATCCTAAAAGCGA+TGG | 0.625731 | 3_4:-64752806 | Msa0514090:CDS |
| CGTTCTTGTTCCGATGCATG+GGG | 0.640029 | 3_4:+64752202 | None:intergenic |
| ATTGTGATGATAAGCCTACA+CGG | 0.769789 | 3_4:+64752620 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAATAGATTGTTTCAA+TGG | - | chr3_4:64751826-64751845 | Msa0514090:CDS | 20.0% |
| !!! | TTTTGTTACATTTTGAACAT+GGG | + | chr3_4:64752626-64752645 | None:intergenic | 20.0% |
| !!! | ATTTTGTTACATTTTGAACA+TGG | + | chr3_4:64752627-64752646 | None:intergenic | 20.0% |
| !! | ACAATAATAGATTGTTTCAA+TGG | - | chr3_4:64751826-64751845 | Msa0514090:CDS | 20.0% |
| !!! | TTTTGTTACATTTTGAACAT+GGG | + | chr3_4:64752626-64752645 | None:intergenic | 20.0% |
| !!! | ATTTTGTTACATTTTGAACA+TGG | + | chr3_4:64752627-64752646 | None:intergenic | 20.0% |
| !! | TCAATTGGTACCAATAATTT+TGG | - | chr3_4:64751882-64751901 | Msa0514090:CDS | 25.0% |
| ! | GGAATATTAATCATTTGAGA+AGG | + | chr3_4:64752137-64752156 | None:intergenic | 25.0% |
| ! | AGCAATGAAAATATTGATGA+TGG | - | chr3_4:64752209-64752228 | Msa0514090:CDS | 25.0% |
| !! | TTTTGTTGCATTTTGAACAT+GGG | + | chr3_4:64752274-64752293 | None:intergenic | 25.0% |
| !! | ATTTTGTTGCATTTTGAACA+TGG | + | chr3_4:64752275-64752294 | None:intergenic | 25.0% |
| ! | AGAAAAAGAGATACATTTCT+AGG | - | chr3_4:64752365-64752384 | Msa0514090:CDS | 25.0% |
| ! | AGCAATGAAAATATTGATGA+TGG | - | chr3_4:64752209-64752228 | Msa0514090:CDS | 25.0% |
| ! | GAAAAAAGAGATACATTTCT+AGG | - | chr3_4:64752718-64752737 | Msa0514090:CDS | 25.0% |
| !! | TCAATTGGTACCAATAATTT+TGG | - | chr3_4:64751882-64751901 | Msa0514090:CDS | 25.0% |
| ! | GGAATATTAATCATTTGAGA+AGG | + | chr3_4:64752137-64752156 | None:intergenic | 25.0% |
| ! | AGCAATGAAAATATTGATGA+TGG | - | chr3_4:64752209-64752228 | Msa0514090:CDS | 25.0% |
| !! | TTTTGTTGCATTTTGAACAT+GGG | + | chr3_4:64752274-64752293 | None:intergenic | 25.0% |
| !! | ATTTTGTTGCATTTTGAACA+TGG | + | chr3_4:64752275-64752294 | None:intergenic | 25.0% |
| ! | AGAAAAAGAGATACATTTCT+AGG | - | chr3_4:64752365-64752384 | Msa0514090:CDS | 25.0% |
| ! | AGCAATGAAAATATTGATGA+TGG | - | chr3_4:64752209-64752228 | Msa0514090:CDS | 25.0% |
| ! | GAAAAAAGAGATACATTTCT+AGG | - | chr3_4:64752718-64752737 | Msa0514090:CDS | 25.0% |
| ACTCATTCATCATCATCAAT+TGG | - | chr3_4:64751867-64751886 | Msa0514090:CDS | 30.0% | |
| AGCATGACTTCCAAAATTAT+TGG | + | chr3_4:64751895-64751914 | None:intergenic | 30.0% | |
| ATGTTAACAAGAACGATATG+AGG | - | chr3_4:64752174-64752193 | Msa0514090:CDS | 30.0% | |
| TTATCAGTACAAGCAATAAC+AGG | + | chr3_4:64752451-64752470 | None:intergenic | 30.0% | |
| ! | TTACATTTTGAACATGGGTA+CGG | + | chr3_4:64752621-64752640 | None:intergenic | 30.0% |
| TTATCAGTACAAGCAATAAC+AGG | + | chr3_4:64752451-64752470 | None:intergenic | 30.0% | |
| AAGTGGGATAAAAATCAAGT+CGG | - | chr3_4:64752881-64752900 | Msa0514090:CDS | 30.0% | |
| ACTCATTCATCATCATCAAT+TGG | - | chr3_4:64751867-64751886 | Msa0514090:CDS | 30.0% | |
| AGCATGACTTCCAAAATTAT+TGG | + | chr3_4:64751895-64751914 | None:intergenic | 30.0% | |
| ATGTTAACAAGAACGATATG+AGG | - | chr3_4:64752174-64752193 | Msa0514090:CDS | 30.0% | |
| TTATCAGTACAAGCAATAAC+AGG | + | chr3_4:64752451-64752470 | None:intergenic | 30.0% | |
| ! | TTACATTTTGAACATGGGTA+CGG | + | chr3_4:64752621-64752640 | None:intergenic | 30.0% |
| TTATCAGTACAAGCAATAAC+AGG | + | chr3_4:64752451-64752470 | None:intergenic | 30.0% | |
| AAGTGGGATAAAAATCAAGT+CGG | - | chr3_4:64752881-64752900 | Msa0514090:CDS | 30.0% | |
| AGATTGTTTCAATGGATGCA+TGG | - | chr3_4:64751834-64751853 | Msa0514090:CDS | 35.0% | |
| !! | TAATTTTGGAAGTCATGCTC+CGG | - | chr3_4:64751896-64751915 | Msa0514090:CDS | 35.0% |
| AGATTCTTGAAGGTCAGTTT+GGG | - | chr3_4:64751937-64751956 | Msa0514090:CDS | 35.0% | |
| ATTGTGATGATAAGCCTACA+CGG | + | chr3_4:64752103-64752122 | None:intergenic | 35.0% | |
| AATATTCCTGTTGCTGATGT+TGG | - | chr3_4:64752149-64752168 | Msa0514090:CDS | 35.0% | |
| ! | TTGCATTTTGAACATGGGTA+CGG | + | chr3_4:64752269-64752288 | None:intergenic | 35.0% |
| CAGATTCAAAAGCTCAATGA+CGG | - | chr3_4:64752409-64752428 | Msa0514090:CDS | 35.0% | |
| CAGATTCAAAAGCTCAATGA+CGG | - | chr3_4:64752409-64752428 | Msa0514090:CDS | 35.0% | |
| ! | TTTTTATCCCACTTGGAAGA+GGG | + | chr3_4:64752875-64752894 | None:intergenic | 35.0% |
| ! | ATTTTTATCCCACTTGGAAG+AGG | + | chr3_4:64752876-64752895 | None:intergenic | 35.0% |
| ! | GACTTGATTTTTATCCCACT+TGG | + | chr3_4:64752882-64752901 | None:intergenic | 35.0% |
| AGATTGTTTCAATGGATGCA+TGG | - | chr3_4:64751834-64751853 | Msa0514090:CDS | 35.0% | |
| !! | TAATTTTGGAAGTCATGCTC+CGG | - | chr3_4:64751896-64751915 | Msa0514090:CDS | 35.0% |
| AGATTCTTGAAGGTCAGTTT+GGG | - | chr3_4:64751937-64751956 | Msa0514090:CDS | 35.0% | |
| ATTGTGATGATAAGCCTACA+CGG | + | chr3_4:64752103-64752122 | None:intergenic | 35.0% | |
| AATATTCCTGTTGCTGATGT+TGG | - | chr3_4:64752149-64752168 | Msa0514090:CDS | 35.0% | |
| ! | TTGCATTTTGAACATGGGTA+CGG | + | chr3_4:64752269-64752288 | None:intergenic | 35.0% |
| CAGATTCAAAAGCTCAATGA+CGG | - | chr3_4:64752409-64752428 | Msa0514090:CDS | 35.0% | |
| CAGATTCAAAAGCTCAATGA+CGG | - | chr3_4:64752409-64752428 | Msa0514090:CDS | 35.0% | |
| ! | TTTTTATCCCACTTGGAAGA+GGG | + | chr3_4:64752875-64752894 | None:intergenic | 35.0% |
| ! | ATTTTTATCCCACTTGGAAG+AGG | + | chr3_4:64752876-64752895 | None:intergenic | 35.0% |
| ! | GACTTGATTTTTATCCCACT+TGG | + | chr3_4:64752882-64752901 | None:intergenic | 35.0% |
| !! | AATTTTGGAAGTCATGCTCC+GGG | - | chr3_4:64751897-64751916 | Msa0514090:CDS | 40.0% |
| !! | CAAGAATCTCCATCGCTTTT+AGG | + | chr3_4:64751926-64751945 | None:intergenic | 40.0% |
| AAAGCGATGGAGATTCTTGA+AGG | - | chr3_4:64751927-64751946 | Msa0514090:CDS | 40.0% | |
| GAGATTCTTGAAGGTCAGTT+TGG | - | chr3_4:64751936-64751955 | Msa0514090:CDS | 40.0% | |
| TTTCTTGTGAGGTAGGCTAT+GGG | + | chr3_4:64752240-64752259 | None:intergenic | 40.0% | |
| ATTTCTTGTGAGGTAGGCTA+TGG | + | chr3_4:64752241-64752260 | None:intergenic | 40.0% | |
| AGCCTACCTCACAAGAAATA+TGG | - | chr3_4:64752242-64752261 | Msa0514090:intron | 40.0% | |
| GTCCATATTTCTTGTGAGGT+AGG | + | chr3_4:64752247-64752266 | None:intergenic | 40.0% | |
| TACGGTCCATATTTCTTGTG+AGG | + | chr3_4:64752251-64752270 | None:intergenic | 40.0% | |
| ! | AGCTTTTGAATCTGAAGACG+CGG | + | chr3_4:64752403-64752422 | None:intergenic | 40.0% |
| ATCGGAACAAGAACGATATG+AGG | - | chr3_4:64752526-64752545 | Msa0514090:CDS | 40.0% | |
| TTTCTTGTGAGGTAGGCTAT+GGG | + | chr3_4:64752240-64752259 | None:intergenic | 40.0% | |
| ATTTCTTGTGAGGTAGGCTA+TGG | + | chr3_4:64752241-64752260 | None:intergenic | 40.0% | |
| AGCCTACCTCACAAGAAATA+TGG | - | chr3_4:64752242-64752261 | Msa0514090:intron | 40.0% | |
| GTCCATATTTCTTGTGAGGT+AGG | + | chr3_4:64752247-64752266 | None:intergenic | 40.0% | |
| TACGGTCCATATTTCTTGTG+AGG | + | chr3_4:64752251-64752270 | None:intergenic | 40.0% | |
| ! | AGCTTTTGAATCTGAAGACG+CGG | + | chr3_4:64752403-64752422 | None:intergenic | 40.0% |
| ! | TTTTATCCCACTTGGAAGAG+GGG | + | chr3_4:64752874-64752893 | None:intergenic | 40.0% |
| !! | AATTTTGGAAGTCATGCTCC+GGG | - | chr3_4:64751897-64751916 | Msa0514090:CDS | 40.0% |
| !! | CAAGAATCTCCATCGCTTTT+AGG | + | chr3_4:64751926-64751945 | None:intergenic | 40.0% |
| AAAGCGATGGAGATTCTTGA+AGG | - | chr3_4:64751927-64751946 | Msa0514090:CDS | 40.0% | |
| GAGATTCTTGAAGGTCAGTT+TGG | - | chr3_4:64751936-64751955 | Msa0514090:CDS | 40.0% | |
| TTTCTTGTGAGGTAGGCTAT+GGG | + | chr3_4:64752240-64752259 | None:intergenic | 40.0% | |
| ATTTCTTGTGAGGTAGGCTA+TGG | + | chr3_4:64752241-64752260 | None:intergenic | 40.0% | |
| AGCCTACCTCACAAGAAATA+TGG | - | chr3_4:64752242-64752261 | Msa0514090:intron | 40.0% | |
| GTCCATATTTCTTGTGAGGT+AGG | + | chr3_4:64752247-64752266 | None:intergenic | 40.0% | |
| TACGGTCCATATTTCTTGTG+AGG | + | chr3_4:64752251-64752270 | None:intergenic | 40.0% | |
| ! | AGCTTTTGAATCTGAAGACG+CGG | + | chr3_4:64752403-64752422 | None:intergenic | 40.0% |
| ATCGGAACAAGAACGATATG+AGG | - | chr3_4:64752526-64752545 | Msa0514090:CDS | 40.0% | |
| TTTCTTGTGAGGTAGGCTAT+GGG | + | chr3_4:64752240-64752259 | None:intergenic | 40.0% | |
| ATTTCTTGTGAGGTAGGCTA+TGG | + | chr3_4:64752241-64752260 | None:intergenic | 40.0% | |
| AGCCTACCTCACAAGAAATA+TGG | - | chr3_4:64752242-64752261 | Msa0514090:intron | 40.0% | |
| GTCCATATTTCTTGTGAGGT+AGG | + | chr3_4:64752247-64752266 | None:intergenic | 40.0% | |
| TACGGTCCATATTTCTTGTG+AGG | + | chr3_4:64752251-64752270 | None:intergenic | 40.0% | |
| ! | AGCTTTTGAATCTGAAGACG+CGG | + | chr3_4:64752403-64752422 | None:intergenic | 40.0% |
| ! | TTTTATCCCACTTGGAAGAG+GGG | + | chr3_4:64752874-64752893 | None:intergenic | 40.0% |
| !!! | TCCATCGCTTTTAGGATTCC+CGG | + | chr3_4:64751918-64751937 | None:intergenic | 45.0% |
| TCTCATCTTGATCTCCGTGT+AGG | - | chr3_4:64752086-64752105 | Msa0514090:CDS | 45.0% | |
| ACATCTCCAACATCAGCAAC+AGG | + | chr3_4:64752158-64752177 | None:intergenic | 45.0% | |
| ATTGCTCTTACCCCATGCAT+CGG | - | chr3_4:64752508-64752527 | Msa0514090:CDS | 45.0% | |
| TCGTTCTTGTTCCGATGCAT+GGG | + | chr3_4:64752522-64752541 | None:intergenic | 45.0% | |
| ATCGTTCTTGTTCCGATGCA+TGG | + | chr3_4:64752523-64752542 | None:intergenic | 45.0% | |
| !!! | TCCATCGCTTTTAGGATTCC+CGG | + | chr3_4:64751918-64751937 | None:intergenic | 45.0% |
| TCTCATCTTGATCTCCGTGT+AGG | - | chr3_4:64752086-64752105 | Msa0514090:CDS | 45.0% | |
| ACATCTCCAACATCAGCAAC+AGG | + | chr3_4:64752158-64752177 | None:intergenic | 45.0% | |
| ATTGCTCTTACCCCATGCAT+CGG | - | chr3_4:64752508-64752527 | Msa0514090:CDS | 45.0% | |
| TCGTTCTTGTTCCGATGCAT+GGG | + | chr3_4:64752522-64752541 | None:intergenic | 45.0% | |
| ATCGTTCTTGTTCCGATGCA+TGG | + | chr3_4:64752523-64752542 | None:intergenic | 45.0% | |
| !! | ATCATTAATATTTATATTAA+TGG | + | chr3_4:64751997-64752016 | None:intergenic | 5.0% |
| !! | ATCATTAATATTTATATTAA+TGG | + | chr3_4:64751997-64752016 | None:intergenic | 5.0% |
| TCCGGGAATCCTAAAAGCGA+TGG | - | chr3_4:64751914-64751933 | Msa0514090:CDS | 50.0% | |
| CGTTCTTGTTCCGATGCATG+GGG | + | chr3_4:64752521-64752540 | None:intergenic | 50.0% | |
| CTCTTACCCCTCTTCCAAGT+GGG | - | chr3_4:64752865-64752884 | Msa0514090:CDS | 50.0% | |
| TCCGGGAATCCTAAAAGCGA+TGG | - | chr3_4:64751914-64751933 | Msa0514090:CDS | 50.0% | |
| CGTTCTTGTTCCGATGCATG+GGG | + | chr3_4:64752521-64752540 | None:intergenic | 50.0% | |
| CTCTTACCCCTCTTCCAAGT+GGG | - | chr3_4:64752865-64752884 | Msa0514090:CDS | 50.0% | |
| GCTCTTACCCCTCTTCCAAG+TGG | - | chr3_4:64752864-64752883 | Msa0514090:CDS | 55.0% | |
| GCTCTTACCCCTCTTCCAAG+TGG | - | chr3_4:64752864-64752883 | Msa0514090:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 64751822 | 64752920 | 64751822 | ID=Msa0514090;Name=Msa0514090 |
| chr3_4 | mRNA | 64751822 | 64752920 | 64751822 | ID=Msa0514090-mRNA-1;Parent=Msa0514090;Name=Msa0514090-mRNA-1;_AED=0.07;_eAED=0.10;_QI=0|0|0|1|1|1|2|0|332 |
| chr3_4 | exon | 64752339 | 64752920 | 64752339 | ID=Msa0514090-mRNA-1:exon:16330;Parent=Msa0514090-mRNA-1 |
| chr3_4 | exon | 64751822 | 64752238 | 64751822 | ID=Msa0514090-mRNA-1:exon:16329;Parent=Msa0514090-mRNA-1 |
| chr3_4 | CDS | 64752339 | 64752920 | 64752339 | ID=Msa0514090-mRNA-1:cds;Parent=Msa0514090-mRNA-1 |
| chr3_4 | CDS | 64751822 | 64752238 | 64751822 | ID=Msa0514090-mRNA-1:cds;Parent=Msa0514090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
