Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516410 | XP_024633826.2 | 86.667 | 270 | 23 | 4 | 1 | 266 | 1 | 261 | 3.86e-167 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516410 | sp|Q9LVU8|RKD4_ARATH | 57.143 | 105 | 45 | 0 | 159 | 263 | 148 | 252 | 1.23e-33 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516410 | G7J7G0 | 86.667 | 270 | 23 | 4 | 1 | 266 | 1 | 261 | 1.84e-167 | 473 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0516410 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516410 | MtrunA17_Chr3g0127001 | 86.667 | 270 | 23 | 4 | 1 | 266 | 1 | 261 | 3.55e-171 | 473 |
| Msa0516410 | MtrunA17_Chr1g0182631 | 85.833 | 240 | 25 | 3 | 30 | 266 | 1 | 234 | 2.78e-150 | 419 |
| Msa0516410 | MtrunA17_Chr4g0060761 | 52.778 | 108 | 42 | 2 | 164 | 262 | 160 | 267 | 5.55e-30 | 113 |
| Msa0516410 | MtrunA17_Chr3g0092141 | 47.321 | 112 | 53 | 1 | 159 | 264 | 59 | 170 | 9.98e-30 | 110 |
| Msa0516410 | MtrunA17_Chr5g0406901 | 39.200 | 125 | 58 | 2 | 153 | 259 | 190 | 314 | 9.35e-22 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516410 | AT5G53040.1 | 57.143 | 105 | 45 | 0 | 159 | 263 | 148 | 252 | 1.25e-34 | 125 |
| Msa0516410 | AT5G66990.1 | 53.153 | 111 | 41 | 2 | 164 | 263 | 164 | 274 | 1.06e-31 | 118 |
| Msa0516410 | AT1G18790.1 | 50.435 | 115 | 47 | 2 | 156 | 260 | 125 | 239 | 4.77e-30 | 114 |
| Msa0516410 | AT1G74480.1 | 45.082 | 122 | 57 | 1 | 145 | 256 | 121 | 242 | 5.90e-29 | 111 |
| Msa0516410 | AT4G35590.2 | 33.333 | 135 | 70 | 2 | 143 | 257 | 169 | 303 | 1.43e-17 | 81.3 |
| Msa0516410 | AT4G35590.1 | 33.333 | 135 | 70 | 2 | 143 | 257 | 219 | 353 | 2.87e-17 | 80.9 |
| Msa0516410 | AT5G16100.2 | 36.082 | 97 | 54 | 1 | 147 | 235 | 342 | 438 | 2.54e-12 | 66.6 |
Find 45 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTAGCAGCCATTGTTAA+AGG | 0.208533 | 3_4:+67920468 | None:intergenic |
| TTGGAGCCTTGAGTGATTTC+AGG | 0.214370 | 3_4:+67921345 | None:intergenic |
| AATGTTGTCTTGCCTGAGTT+GGG | 0.325768 | 3_4:-67920720 | Msa0516410:CDS |
| CAATGTTGTCTTGCCTGAGT+TGG | 0.335905 | 3_4:-67920721 | Msa0516410:CDS |
| ATGATTTCTTTGAGTTTGAT+TGG | 0.342407 | 3_4:-67920872 | Msa0516410:CDS |
| GAAGATGTTGGAGAAACTTC+CGG | 0.360968 | 3_4:-67919535 | Msa0516410:CDS |
| GCCTTGAGTGATTTCAGGTT+GGG | 0.378542 | 3_4:+67921350 | None:intergenic |
| CAGCAATAGTCTCACCTTTG+TGG | 0.390633 | 3_4:+67920688 | None:intergenic |
| AAGATGTTGGAGAAACTTCC+GGG | 0.393818 | 3_4:-67919534 | Msa0516410:CDS |
| AGAATTGTCATTAGTTCCAT+TGG | 0.417793 | 3_4:-67920586 | Msa0516410:CDS |
| TCATCATTCAAATCCATTCC+CGG | 0.427588 | 3_4:+67919516 | None:intergenic |
| TTGTGAAGAAAGAGAAGGAA+TGG | 0.429732 | 3_4:-67920617 | Msa0516410:CDS |
| CAGAAAACTGAGGAGCTTGA+TGG | 0.447810 | 3_4:-67920379 | Msa0516410:CDS |
| CTCGTACTGCTACTTGTACT+TGG | 0.454025 | 3_4:+67920558 | None:intergenic |
| GGTACTCATCGACAACCTTA+AGG | 0.457457 | 3_4:-67920358 | Msa0516410:intron |
| GTTGGAGAAACTTCCGGGAA+TGG | 0.462988 | 3_4:-67919529 | Msa0516410:CDS |
| CCTCAAAATTATTCTGATCA+AGG | 0.463476 | 3_4:+67920760 | None:intergenic |
| TGATTTCTTTGAGTTTGATT+GGG | 0.465378 | 3_4:-67920871 | Msa0516410:CDS |
| TGTGAAGAAAGAGAAGGAAT+GGG | 0.479018 | 3_4:-67920616 | Msa0516410:CDS |
| AACTCAAAGAAATCATCAAA+TGG | 0.481692 | 3_4:+67920879 | None:intergenic |
| TGTTGTGTGATGCAGGAAAA+GGG | 0.482015 | 3_4:-67919594 | Msa0516410:intron |
| AAATCACTCAAGGCTCCAAC+TGG | 0.487286 | 3_4:-67921341 | Msa0516410:CDS |
| ATGATGAAATCAAGAAGCTT+AGG | 0.499327 | 3_4:-67919500 | Msa0516410:CDS |
| CTTGTACTTGGCAATGCCAA+TGG | 0.515278 | 3_4:+67920570 | None:intergenic |
| GGAGAAGCAAAAGAAGATGT+TGG | 0.518512 | 3_4:-67919547 | Msa0516410:CDS |
| GCTTCTGTGAAAACTGAAAG+TGG | 0.520217 | 3_4:-67920642 | Msa0516410:CDS |
| GACTAAGGAAGTTGCCATGT+TGG | 0.527747 | 3_4:-67919568 | Msa0516410:CDS |
| ATGTTGTCTTGCCTGAGTTG+GGG | 0.533975 | 3_4:-67920719 | Msa0516410:CDS |
| GCAGGAAAAGGGTTTGACTA+AGG | 0.541768 | 3_4:-67919583 | Msa0516410:intron |
| AGCCTTGAGTGATTTCAGGT+TGG | 0.554392 | 3_4:+67921349 | None:intergenic |
| TTGAACATTGTGATACCAGT+TGG | 0.557847 | 3_4:+67921326 | None:intergenic |
| TGGTTGTAATGCCCCAACTC+AGG | 0.557980 | 3_4:+67920708 | None:intergenic |
| AATTATTCTGATCAAGGTGT+GGG | 0.571228 | 3_4:+67920766 | None:intergenic |
| CTCAGGCAAGACAACATTGA+GGG | 0.577274 | 3_4:+67920725 | None:intergenic |
| GTACTAGCATCATTAAGAAG+AGG | 0.607800 | 3_4:-67920536 | Msa0516410:CDS |
| TATTCTGATCAAGGTGTGGG+AGG | 0.607927 | 3_4:+67920769 | None:intergenic |
| ACCCAACCTGAAATCACTCA+AGG | 0.608828 | 3_4:-67921351 | Msa0516410:CDS |
| AAATTATTCTGATCAAGGTG+TGG | 0.609905 | 3_4:+67920765 | None:intergenic |
| GCAGGGAGCTCAATATCACT+AGG | 0.629741 | 3_4:-67920410 | Msa0516410:CDS |
| GCTGCTAAGAAAATGAATGT+TGG | 0.631864 | 3_4:-67920456 | Msa0516410:CDS |
| TCAGGCAAGACAACATTGAG+GGG | 0.654617 | 3_4:+67920726 | None:intergenic |
| ACTCAGGCAAGACAACATTG+AGG | 0.692460 | 3_4:+67920724 | None:intergenic |
| GGGAGCTCAATATCACTAGG+TGG | 0.701034 | 3_4:-67920407 | Msa0516410:CDS |
| TTGGGGCATTACAACCACAA+AGG | 0.718163 | 3_4:-67920702 | Msa0516410:CDS |
| GGTGGCCTCACAGAAAACTG+AGG | 0.738213 | 3_4:-67920389 | Msa0516410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACATAACATTAAAAAA+GGG | + | chr3_4:67919864-67919883 | None:intergenic | 10.0% |
| !! | AAGTAAAAAACATAAAAAAT+TGG | + | chr3_4:67920820-67920839 | None:intergenic | 10.0% |
| !! | AAAAACATAACATTAAAAAA+GGG | + | chr3_4:67919864-67919883 | None:intergenic | 10.0% |
| !! | AAGTAAAAAACATAAAAAAT+TGG | + | chr3_4:67920820-67920839 | None:intergenic | 10.0% |
| !! | AAAACATAACATTAAAAAAG+GGG | + | chr3_4:67919863-67919882 | None:intergenic | 15.0% |
| !! | GAAAAACATAACATTAAAAA+AGG | + | chr3_4:67919865-67919884 | None:intergenic | 15.0% |
| !! | AAAGAAAAAGAATATTCTTA+AGG | + | chr3_4:67920744-67920763 | None:intergenic | 15.0% |
| !! | ATTAGTTATTTATTGTCAAA+TGG | - | chr3_4:67921169-67921188 | Msa0516410:intron | 15.0% |
| !! | AAAACATAACATTAAAAAAG+GGG | + | chr3_4:67919863-67919882 | None:intergenic | 15.0% |
| !! | GAAAAACATAACATTAAAAA+AGG | + | chr3_4:67919865-67919884 | None:intergenic | 15.0% |
| !! | AAAGAAAAAGAATATTCTTA+AGG | + | chr3_4:67920744-67920763 | None:intergenic | 15.0% |
| !! | ATTAGTTATTTATTGTCAAA+TGG | - | chr3_4:67921169-67921188 | Msa0516410:intron | 15.0% |
| !! | AGAACATAGAAAAAAAAAGA+AGG | + | chr3_4:67919652-67919671 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTCTATGTTCTTG+TGG | - | chr3_4:67919654-67919673 | Msa0516410:intron | 20.0% |
| !!! | TTTTAATGTTAACAGAATCA+TGG | - | chr3_4:67919896-67919915 | Msa0516410:intron | 20.0% |
| !! | TCATGTAAAAATGATTACTT+TGG | + | chr3_4:67919977-67919996 | None:intergenic | 20.0% |
| !! | AGAACATAGAAAAAAAAAGA+AGG | + | chr3_4:67919652-67919671 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTCTATGTTCTTG+TGG | - | chr3_4:67919654-67919673 | Msa0516410:intron | 20.0% |
| !!! | TTTTAATGTTAACAGAATCA+TGG | - | chr3_4:67919896-67919915 | Msa0516410:intron | 20.0% |
| !! | TCATGTAAAAATGATTACTT+TGG | + | chr3_4:67919977-67919996 | None:intergenic | 20.0% |
| ! | AACATTAAAAAAGGGGAAAA+CGG | + | chr3_4:67919856-67919875 | None:intergenic | 25.0% |
| ! | AACTCAAAGAAATCATCAAA+TGG | + | chr3_4:67919930-67919949 | None:intergenic | 25.0% |
| !! | ATGATTTCTTTGAGTTTGAT+TGG | - | chr3_4:67919934-67919953 | Msa0516410:intron | 25.0% |
| !! | TGATTTCTTTGAGTTTGATT+GGG | - | chr3_4:67919935-67919954 | Msa0516410:intron | 25.0% |
| !! | TTTTGATGTTCCTTTAACAA+TGG | - | chr3_4:67920328-67920347 | Msa0516410:intron | 25.0% |
| ! | ACAACATAGAATATACCTTA+AGG | + | chr3_4:67920466-67920485 | None:intergenic | 25.0% |
| ! | TTTCATGTACTTGAAAATGT+GGG | + | chr3_4:67920508-67920527 | None:intergenic | 25.0% |
| ! | AAACCATTATTTACTCTGTT+TGG | - | chr3_4:67920525-67920544 | Msa0516410:CDS | 25.0% |
| ! | AATCCAAACAGAGTAAATAA+TGG | + | chr3_4:67920531-67920550 | None:intergenic | 25.0% |
| ! | TATGTTTCAATTATCATTCC+CGG | + | chr3_4:67920601-67920620 | None:intergenic | 25.0% |
| ! | TAAAGAGAATATAAGATGTG+TGG | + | chr3_4:67920843-67920862 | None:intergenic | 25.0% |
| ! | ACACATCTTATATTCTCTTT+AGG | - | chr3_4:67920842-67920861 | Msa0516410:CDS | 25.0% |
| ! | CATTTCAAATACATCTACAA+TGG | - | chr3_4:67920867-67920886 | Msa0516410:CDS | 25.0% |
| ! | AACATTAAAAAAGGGGAAAA+CGG | + | chr3_4:67919856-67919875 | None:intergenic | 25.0% |
| ! | AACTCAAAGAAATCATCAAA+TGG | + | chr3_4:67919930-67919949 | None:intergenic | 25.0% |
| !! | ATGATTTCTTTGAGTTTGAT+TGG | - | chr3_4:67919934-67919953 | Msa0516410:intron | 25.0% |
| !! | TGATTTCTTTGAGTTTGATT+GGG | - | chr3_4:67919935-67919954 | Msa0516410:intron | 25.0% |
| !! | TTTTGATGTTCCTTTAACAA+TGG | - | chr3_4:67920328-67920347 | Msa0516410:intron | 25.0% |
| ! | ACAACATAGAATATACCTTA+AGG | + | chr3_4:67920466-67920485 | None:intergenic | 25.0% |
| ! | TTTCATGTACTTGAAAATGT+GGG | + | chr3_4:67920508-67920527 | None:intergenic | 25.0% |
| ! | AAACCATTATTTACTCTGTT+TGG | - | chr3_4:67920525-67920544 | Msa0516410:CDS | 25.0% |
| ! | AATCCAAACAGAGTAAATAA+TGG | + | chr3_4:67920531-67920550 | None:intergenic | 25.0% |
| ! | TATGTTTCAATTATCATTCC+CGG | + | chr3_4:67920601-67920620 | None:intergenic | 25.0% |
| ! | TAAAGAGAATATAAGATGTG+TGG | + | chr3_4:67920843-67920862 | None:intergenic | 25.0% |
| ! | ACACATCTTATATTCTCTTT+AGG | - | chr3_4:67920842-67920861 | Msa0516410:CDS | 25.0% |
| ! | CATTTCAAATACATCTACAA+TGG | - | chr3_4:67920867-67920886 | Msa0516410:CDS | 25.0% |
| CATTGAAAGTAGTGATCATA+TGG | + | chr3_4:67919561-67919580 | None:intergenic | 30.0% | |
| GAATGAAAAACAGAAAAGGA+AGG | + | chr3_4:67919586-67919605 | None:intergenic | 30.0% | |
| AACAAAGATATGACAGGTTA+AGG | + | chr3_4:67919625-67919644 | None:intergenic | 30.0% | |
| GGAAAAAACAAAGATATGAC+AGG | + | chr3_4:67919631-67919650 | None:intergenic | 30.0% | |
| TATAATGATGTGTTGAAGTG+TGG | - | chr3_4:67919770-67919789 | Msa0516410:intron | 30.0% | |
| AATTATTCTGATCAAGGTGT+GGG | + | chr3_4:67920043-67920062 | None:intergenic | 30.0% | |
| AAATTATTCTGATCAAGGTG+TGG | + | chr3_4:67920044-67920063 | None:intergenic | 30.0% | |
| CCTCAAAATTATTCTGATCA+AGG | + | chr3_4:67920049-67920068 | None:intergenic | 30.0% | |
| ! | CCTTGATCAGAATAATTTTG+AGG | - | chr3_4:67920046-67920065 | Msa0516410:intron | 30.0% |
| AGAATTGTCATTAGTTCCAT+TGG | - | chr3_4:67920220-67920239 | Msa0516410:intron | 30.0% | |
| !!! | CCTGCATCTTTTTTTCAAAA+GGG | + | chr3_4:67920381-67920400 | None:intergenic | 30.0% |
| !! | CCTTTTGAAAAAAAGATGCA+GGG | - | chr3_4:67920379-67920398 | Msa0516410:CDS | 30.0% |
| TTCATGTACTTGAAAATGTG+GGG | + | chr3_4:67920507-67920526 | None:intergenic | 30.0% | |
| GTTTCATGTACTTGAAAATG+TGG | + | chr3_4:67920509-67920528 | None:intergenic | 30.0% | |
| ! | TGTACCTTAGACTAAGTTTT+TGG | - | chr3_4:67920564-67920583 | Msa0516410:CDS | 30.0% |
| !! | TAAGAGTATCATACAAGTGT+AGG | + | chr3_4:67920695-67920714 | None:intergenic | 30.0% |
| ! | CTTTGTTTCGACACTTAAAT+CGG | - | chr3_4:67920760-67920779 | Msa0516410:CDS | 30.0% |
| TTAGTTTCTTCGATAGTAGA+TGG | - | chr3_4:67920961-67920980 | Msa0516410:intron | 30.0% | |
| ATGATGAAATCAAGAAGCTT+AGG | - | chr3_4:67921306-67921325 | Msa0516410:CDS | 30.0% | |
| CATTGAAAGTAGTGATCATA+TGG | + | chr3_4:67919561-67919580 | None:intergenic | 30.0% | |
| GAATGAAAAACAGAAAAGGA+AGG | + | chr3_4:67919586-67919605 | None:intergenic | 30.0% | |
| AACAAAGATATGACAGGTTA+AGG | + | chr3_4:67919625-67919644 | None:intergenic | 30.0% | |
| GGAAAAAACAAAGATATGAC+AGG | + | chr3_4:67919631-67919650 | None:intergenic | 30.0% | |
| TATAATGATGTGTTGAAGTG+TGG | - | chr3_4:67919770-67919789 | Msa0516410:intron | 30.0% | |
| AATTATTCTGATCAAGGTGT+GGG | + | chr3_4:67920043-67920062 | None:intergenic | 30.0% | |
| AAATTATTCTGATCAAGGTG+TGG | + | chr3_4:67920044-67920063 | None:intergenic | 30.0% | |
| CCTCAAAATTATTCTGATCA+AGG | + | chr3_4:67920049-67920068 | None:intergenic | 30.0% | |
| ! | CCTTGATCAGAATAATTTTG+AGG | - | chr3_4:67920046-67920065 | Msa0516410:intron | 30.0% |
| AGAATTGTCATTAGTTCCAT+TGG | - | chr3_4:67920220-67920239 | Msa0516410:intron | 30.0% | |
| !!! | CCTGCATCTTTTTTTCAAAA+GGG | + | chr3_4:67920381-67920400 | None:intergenic | 30.0% |
| !! | CCTTTTGAAAAAAAGATGCA+GGG | - | chr3_4:67920379-67920398 | Msa0516410:CDS | 30.0% |
| TTCATGTACTTGAAAATGTG+GGG | + | chr3_4:67920507-67920526 | None:intergenic | 30.0% | |
| GTTTCATGTACTTGAAAATG+TGG | + | chr3_4:67920509-67920528 | None:intergenic | 30.0% | |
| ! | TGTACCTTAGACTAAGTTTT+TGG | - | chr3_4:67920564-67920583 | Msa0516410:CDS | 30.0% |
| !! | TAAGAGTATCATACAAGTGT+AGG | + | chr3_4:67920695-67920714 | None:intergenic | 30.0% |
| ! | CTTTGTTTCGACACTTAAAT+CGG | - | chr3_4:67920760-67920779 | Msa0516410:CDS | 30.0% |
| TTAGTTTCTTCGATAGTAGA+TGG | - | chr3_4:67920961-67920980 | Msa0516410:intron | 30.0% | |
| ATGATGAAATCAAGAAGCTT+AGG | - | chr3_4:67921306-67921325 | Msa0516410:CDS | 30.0% | |
| TTGAACATTGTGATACCAGT+TGG | + | chr3_4:67919483-67919502 | None:intergenic | 35.0% | |
| CGTGGAATGAAAAACAGAAA+AGG | + | chr3_4:67919590-67919609 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGTGAAGAAAGAGA+AGG | - | chr3_4:67920184-67920203 | Msa0516410:intron | 35.0% |
| TTGTGAAGAAAGAGAAGGAA+TGG | - | chr3_4:67920189-67920208 | Msa0516410:intron | 35.0% | |
| TGTGAAGAAAGAGAAGGAAT+GGG | - | chr3_4:67920190-67920209 | Msa0516410:intron | 35.0% | |
| GTACTAGCATCATTAAGAAG+AGG | - | chr3_4:67920270-67920289 | Msa0516410:intron | 35.0% | |
| TTCTTAGCAGCCATTGTTAA+AGG | + | chr3_4:67920341-67920360 | None:intergenic | 35.0% | |
| GCTGCTAAGAAAATGAATGT+TGG | - | chr3_4:67920350-67920369 | Msa0516410:intron | 35.0% | |
| !! | CCCTTTTGAAAAAAAGATGC+AGG | - | chr3_4:67920378-67920397 | Msa0516410:CDS | 35.0% |
| !!! | CCCTGCATCTTTTTTTCAAA+AGG | + | chr3_4:67920382-67920401 | None:intergenic | 35.0% |
| TGGACCAAAAACTTAGTCTA+AGG | + | chr3_4:67920571-67920590 | None:intergenic | 35.0% | |
| CTATGAAACATCACAACTCT+AGG | - | chr3_4:67920650-67920669 | Msa0516410:CDS | 35.0% | |
| ! | AAAATGTATCGACGCAACAA+TGG | - | chr3_4:67920902-67920921 | Msa0516410:intron | 35.0% |
| !! | ATTGTTTTGTTGTGTGATGC+AGG | - | chr3_4:67921205-67921224 | Msa0516410:intron | 35.0% |
| TCATCATTCAAATCCATTCC+CGG | + | chr3_4:67921293-67921312 | None:intergenic | 35.0% | |
| TTGAACATTGTGATACCAGT+TGG | + | chr3_4:67919483-67919502 | None:intergenic | 35.0% | |
| CGTGGAATGAAAAACAGAAA+AGG | + | chr3_4:67919590-67919609 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGTGAAGAAAGAGA+AGG | - | chr3_4:67920184-67920203 | Msa0516410:intron | 35.0% |
| TTGTGAAGAAAGAGAAGGAA+TGG | - | chr3_4:67920189-67920208 | Msa0516410:intron | 35.0% | |
| TGTGAAGAAAGAGAAGGAAT+GGG | - | chr3_4:67920190-67920209 | Msa0516410:intron | 35.0% | |
| GTACTAGCATCATTAAGAAG+AGG | - | chr3_4:67920270-67920289 | Msa0516410:intron | 35.0% | |
| TTCTTAGCAGCCATTGTTAA+AGG | + | chr3_4:67920341-67920360 | None:intergenic | 35.0% | |
| GCTGCTAAGAAAATGAATGT+TGG | - | chr3_4:67920350-67920369 | Msa0516410:intron | 35.0% | |
| !! | CCCTTTTGAAAAAAAGATGC+AGG | - | chr3_4:67920378-67920397 | Msa0516410:CDS | 35.0% |
| !!! | CCCTGCATCTTTTTTTCAAA+AGG | + | chr3_4:67920382-67920401 | None:intergenic | 35.0% |
| TGGACCAAAAACTTAGTCTA+AGG | + | chr3_4:67920571-67920590 | None:intergenic | 35.0% | |
| CTATGAAACATCACAACTCT+AGG | - | chr3_4:67920650-67920669 | Msa0516410:CDS | 35.0% | |
| ! | AAAATGTATCGACGCAACAA+TGG | - | chr3_4:67920902-67920921 | Msa0516410:intron | 35.0% |
| !! | ATTGTTTTGTTGTGTGATGC+AGG | - | chr3_4:67921205-67921224 | Msa0516410:intron | 35.0% |
| TCATCATTCAAATCCATTCC+CGG | + | chr3_4:67921293-67921312 | None:intergenic | 35.0% | |
| !!! | TTGTCTGTGTCGTTTTGTTG+AGG | + | chr3_4:67919506-67919525 | None:intergenic | 40.0% |
| ACGACACAGACAAGTAAGTA+TGG | - | chr3_4:67919513-67919532 | Msa0516410:CDS | 40.0% | |
| CACAGACAAGTAAGTATGGT+CGG | - | chr3_4:67919517-67919536 | Msa0516410:CDS | 40.0% | |
| ! | TTAAGGTACTCTACATGTCG+TGG | + | chr3_4:67919608-67919627 | None:intergenic | 40.0% |
| CATTCTCTTTGTGACTTTCG+AGG | - | chr3_4:67919795-67919814 | Msa0516410:intron | 40.0% | |
| TTCGAGGTCGATATGGAATT+TGG | - | chr3_4:67919811-67919830 | Msa0516410:intron | 40.0% | |
| AATGTTGTCTTGCCTGAGTT+GGG | - | chr3_4:67920086-67920105 | Msa0516410:intron | 40.0% | |
| GCTTCTGTGAAAACTGAAAG+TGG | - | chr3_4:67920164-67920183 | Msa0516410:intron | 40.0% | |
| TTTCAATTATCATTCCCGGC+GGG | + | chr3_4:67920597-67920616 | None:intergenic | 40.0% | |
| GTTTCAATTATCATTCCCGG+CGG | + | chr3_4:67920598-67920617 | None:intergenic | 40.0% | |
| TTGTTGTGTGATGCAGGAAA+AGG | - | chr3_4:67921211-67921230 | Msa0516410:intron | 40.0% | |
| TGTTGTGTGATGCAGGAAAA+GGG | - | chr3_4:67921212-67921231 | Msa0516410:intron | 40.0% | |
| ! | CTTCTTTTGCTTCTCCAACA+TGG | + | chr3_4:67921255-67921274 | None:intergenic | 40.0% |
| GGAGAAGCAAAAGAAGATGT+TGG | - | chr3_4:67921259-67921278 | Msa0516410:intron | 40.0% | |
| GAAGATGTTGGAGAAACTTC+CGG | - | chr3_4:67921271-67921290 | Msa0516410:intron | 40.0% | |
| AAGATGTTGGAGAAACTTCC+GGG | - | chr3_4:67921272-67921291 | Msa0516410:intron | 40.0% | |
| !!! | TTGTCTGTGTCGTTTTGTTG+AGG | + | chr3_4:67919506-67919525 | None:intergenic | 40.0% |
| ACGACACAGACAAGTAAGTA+TGG | - | chr3_4:67919513-67919532 | Msa0516410:CDS | 40.0% | |
| CACAGACAAGTAAGTATGGT+CGG | - | chr3_4:67919517-67919536 | Msa0516410:CDS | 40.0% | |
| ! | TTAAGGTACTCTACATGTCG+TGG | + | chr3_4:67919608-67919627 | None:intergenic | 40.0% |
| CATTCTCTTTGTGACTTTCG+AGG | - | chr3_4:67919795-67919814 | Msa0516410:intron | 40.0% | |
| TTCGAGGTCGATATGGAATT+TGG | - | chr3_4:67919811-67919830 | Msa0516410:intron | 40.0% | |
| AATGTTGTCTTGCCTGAGTT+GGG | - | chr3_4:67920086-67920105 | Msa0516410:intron | 40.0% | |
| GCTTCTGTGAAAACTGAAAG+TGG | - | chr3_4:67920164-67920183 | Msa0516410:intron | 40.0% | |
| TTTCAATTATCATTCCCGGC+GGG | + | chr3_4:67920597-67920616 | None:intergenic | 40.0% | |
| GTTTCAATTATCATTCCCGG+CGG | + | chr3_4:67920598-67920617 | None:intergenic | 40.0% | |
| TTGTTGTGTGATGCAGGAAA+AGG | - | chr3_4:67921211-67921230 | Msa0516410:intron | 40.0% | |
| TGTTGTGTGATGCAGGAAAA+GGG | - | chr3_4:67921212-67921231 | Msa0516410:intron | 40.0% | |
| ! | CTTCTTTTGCTTCTCCAACA+TGG | + | chr3_4:67921255-67921274 | None:intergenic | 40.0% |
| GGAGAAGCAAAAGAAGATGT+TGG | - | chr3_4:67921259-67921278 | Msa0516410:intron | 40.0% | |
| GAAGATGTTGGAGAAACTTC+CGG | - | chr3_4:67921271-67921290 | Msa0516410:intron | 40.0% | |
| AAGATGTTGGAGAAACTTCC+GGG | - | chr3_4:67921272-67921291 | Msa0516410:intron | 40.0% | |
| ACCCAACCTGAAATCACTCA+AGG | - | chr3_4:67919455-67919474 | Msa0516410:CDS | 45.0% | |
| !! | GCCTTGAGTGATTTCAGGTT+GGG | + | chr3_4:67919459-67919478 | None:intergenic | 45.0% |
| ! | AGCCTTGAGTGATTTCAGGT+TGG | + | chr3_4:67919460-67919479 | None:intergenic | 45.0% |
| TTGGAGCCTTGAGTGATTTC+AGG | + | chr3_4:67919464-67919483 | None:intergenic | 45.0% | |
| AAATCACTCAAGGCTCCAAC+TGG | - | chr3_4:67919465-67919484 | Msa0516410:CDS | 45.0% | |
| TGTGACTTTCGAGGTCGATA+TGG | - | chr3_4:67919804-67919823 | Msa0516410:intron | 45.0% | |
| TATTCTGATCAAGGTGTGGG+AGG | + | chr3_4:67920040-67920059 | None:intergenic | 45.0% | |
| TCAGGCAAGACAACATTGAG+GGG | + | chr3_4:67920083-67920102 | None:intergenic | 45.0% | |
| CTCAGGCAAGACAACATTGA+GGG | + | chr3_4:67920084-67920103 | None:intergenic | 45.0% | |
| ACTCAGGCAAGACAACATTG+AGG | + | chr3_4:67920085-67920104 | None:intergenic | 45.0% | |
| CAATGTTGTCTTGCCTGAGT+TGG | - | chr3_4:67920085-67920104 | Msa0516410:intron | 45.0% | |
| ATGTTGTCTTGCCTGAGTTG+GGG | - | chr3_4:67920087-67920106 | Msa0516410:intron | 45.0% | |
| ! | TTGGGGCATTACAACCACAA+AGG | - | chr3_4:67920104-67920123 | Msa0516410:intron | 45.0% |
| CAGCAATAGTCTCACCTTTG+TGG | + | chr3_4:67920121-67920140 | None:intergenic | 45.0% | |
| CTTGTACTTGGCAATGCCAA+TGG | + | chr3_4:67920239-67920258 | None:intergenic | 45.0% | |
| ! | CTCGTACTGCTACTTGTACT+TGG | + | chr3_4:67920251-67920270 | None:intergenic | 45.0% |
| ! | AAGCTCCTCAGTTTTCTGTG+AGG | + | chr3_4:67920425-67920444 | None:intergenic | 45.0% |
| CAGAAAACTGAGGAGCTTGA+TGG | - | chr3_4:67920427-67920446 | Msa0516410:CDS | 45.0% | |
| GGTACTCATCGACAACCTTA+AGG | - | chr3_4:67920448-67920467 | Msa0516410:CDS | 45.0% | |
| GCAGGAAAAGGGTTTGACTA+AGG | - | chr3_4:67921223-67921242 | Msa0516410:intron | 45.0% | |
| GACTAAGGAAGTTGCCATGT+TGG | - | chr3_4:67921238-67921257 | Msa0516410:intron | 45.0% | |
| ACCCAACCTGAAATCACTCA+AGG | - | chr3_4:67919455-67919474 | Msa0516410:CDS | 45.0% | |
| !! | GCCTTGAGTGATTTCAGGTT+GGG | + | chr3_4:67919459-67919478 | None:intergenic | 45.0% |
| ! | AGCCTTGAGTGATTTCAGGT+TGG | + | chr3_4:67919460-67919479 | None:intergenic | 45.0% |
| TTGGAGCCTTGAGTGATTTC+AGG | + | chr3_4:67919464-67919483 | None:intergenic | 45.0% | |
| AAATCACTCAAGGCTCCAAC+TGG | - | chr3_4:67919465-67919484 | Msa0516410:CDS | 45.0% | |
| TGTGACTTTCGAGGTCGATA+TGG | - | chr3_4:67919804-67919823 | Msa0516410:intron | 45.0% | |
| TATTCTGATCAAGGTGTGGG+AGG | + | chr3_4:67920040-67920059 | None:intergenic | 45.0% | |
| TCAGGCAAGACAACATTGAG+GGG | + | chr3_4:67920083-67920102 | None:intergenic | 45.0% | |
| CTCAGGCAAGACAACATTGA+GGG | + | chr3_4:67920084-67920103 | None:intergenic | 45.0% | |
| ACTCAGGCAAGACAACATTG+AGG | + | chr3_4:67920085-67920104 | None:intergenic | 45.0% | |
| CAATGTTGTCTTGCCTGAGT+TGG | - | chr3_4:67920085-67920104 | Msa0516410:intron | 45.0% | |
| ATGTTGTCTTGCCTGAGTTG+GGG | - | chr3_4:67920087-67920106 | Msa0516410:intron | 45.0% | |
| ! | TTGGGGCATTACAACCACAA+AGG | - | chr3_4:67920104-67920123 | Msa0516410:intron | 45.0% |
| CAGCAATAGTCTCACCTTTG+TGG | + | chr3_4:67920121-67920140 | None:intergenic | 45.0% | |
| CTTGTACTTGGCAATGCCAA+TGG | + | chr3_4:67920239-67920258 | None:intergenic | 45.0% | |
| ! | CTCGTACTGCTACTTGTACT+TGG | + | chr3_4:67920251-67920270 | None:intergenic | 45.0% |
| ! | AAGCTCCTCAGTTTTCTGTG+AGG | + | chr3_4:67920425-67920444 | None:intergenic | 45.0% |
| CAGAAAACTGAGGAGCTTGA+TGG | - | chr3_4:67920427-67920446 | Msa0516410:CDS | 45.0% | |
| GGTACTCATCGACAACCTTA+AGG | - | chr3_4:67920448-67920467 | Msa0516410:CDS | 45.0% | |
| GCAGGAAAAGGGTTTGACTA+AGG | - | chr3_4:67921223-67921242 | Msa0516410:intron | 45.0% | |
| GACTAAGGAAGTTGCCATGT+TGG | - | chr3_4:67921238-67921257 | Msa0516410:intron | 45.0% | |
| TGGTTGTAATGCCCCAACTC+AGG | + | chr3_4:67920101-67920120 | None:intergenic | 50.0% | |
| GCAGGGAGCTCAATATCACT+AGG | - | chr3_4:67920396-67920415 | Msa0516410:CDS | 50.0% | |
| GGGAGCTCAATATCACTAGG+TGG | - | chr3_4:67920399-67920418 | Msa0516410:CDS | 50.0% | |
| CTTGAAAATGTGGGGCAGAG+TGG | + | chr3_4:67920499-67920518 | None:intergenic | 50.0% | |
| GTTGGAGAAACTTCCGGGAA+TGG | - | chr3_4:67921277-67921296 | Msa0516410:intron | 50.0% | |
| TGGTTGTAATGCCCCAACTC+AGG | + | chr3_4:67920101-67920120 | None:intergenic | 50.0% | |
| GCAGGGAGCTCAATATCACT+AGG | - | chr3_4:67920396-67920415 | Msa0516410:CDS | 50.0% | |
| GGGAGCTCAATATCACTAGG+TGG | - | chr3_4:67920399-67920418 | Msa0516410:CDS | 50.0% | |
| CTTGAAAATGTGGGGCAGAG+TGG | + | chr3_4:67920499-67920518 | None:intergenic | 50.0% | |
| GTTGGAGAAACTTCCGGGAA+TGG | - | chr3_4:67921277-67921296 | Msa0516410:intron | 50.0% | |
| GGTGGCCTCACAGAAAACTG+AGG | - | chr3_4:67920417-67920436 | Msa0516410:CDS | 55.0% | |
| !!! | GTTTTTGGTCCATGACCCGC+CGG | - | chr3_4:67920579-67920598 | Msa0516410:CDS | 55.0% |
| !! | TTTTTGGTCCATGACCCGCC+GGG | - | chr3_4:67920580-67920599 | Msa0516410:CDS | 55.0% |
| TTATCATTCCCGGCGGGTCA+TGG | + | chr3_4:67920591-67920610 | None:intergenic | 55.0% | |
| GGTGGCCTCACAGAAAACTG+AGG | - | chr3_4:67920417-67920436 | Msa0516410:CDS | 55.0% | |
| !!! | GTTTTTGGTCCATGACCCGC+CGG | - | chr3_4:67920579-67920598 | Msa0516410:CDS | 55.0% |
| !! | TTTTTGGTCCATGACCCGCC+GGG | - | chr3_4:67920580-67920599 | Msa0516410:CDS | 55.0% |
| TTATCATTCCCGGCGGGTCA+TGG | + | chr3_4:67920591-67920610 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 67919443 | 67921385 | 67919443 | ID=Msa0516410;Name=Msa0516410 |
| chr3_4 | mRNA | 67919443 | 67921385 | 67919443 | ID=Msa0516410-mRNA-1;Parent=Msa0516410;Name=Msa0516410-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|1|1|1|3|0|266 |
| chr3_4 | exon | 67921303 | 67921385 | 67921303 | ID=Msa0516410-mRNA-1:exon:17856;Parent=Msa0516410-mRNA-1 |
| chr3_4 | exon | 67920359 | 67920917 | 67920359 | ID=Msa0516410-mRNA-1:exon:17855;Parent=Msa0516410-mRNA-1 |
| chr3_4 | exon | 67919443 | 67919601 | 67919443 | ID=Msa0516410-mRNA-1:exon:17854;Parent=Msa0516410-mRNA-1 |
| chr3_4 | CDS | 67921303 | 67921385 | 67921303 | ID=Msa0516410-mRNA-1:cds;Parent=Msa0516410-mRNA-1 |
| chr3_4 | CDS | 67920359 | 67920917 | 67920359 | ID=Msa0516410-mRNA-1:cds;Parent=Msa0516410-mRNA-1 |
| chr3_4 | CDS | 67919443 | 67919601 | 67919443 | ID=Msa0516410-mRNA-1:cds;Parent=Msa0516410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
