Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516420 | XP_024633826.2 | 65.449 | 301 | 63 | 5 | 1 | 300 | 1 | 261 | 4.51e-131 | 383 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516420 | sp|Q9LVU8|RKD4_ARATH | 52.381 | 105 | 50 | 0 | 193 | 297 | 148 | 252 | 2.70e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516420 | G7J7G0 | 65.449 | 301 | 63 | 5 | 1 | 300 | 1 | 261 | 2.15e-131 | 383 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0516420 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516420 | MtrunA17_Chr3g0127001 | 65.449 | 301 | 63 | 5 | 1 | 300 | 1 | 261 | 4.15e-135 | 383 |
| Msa0516420 | MtrunA17_Chr1g0182631 | 64.338 | 272 | 58 | 5 | 30 | 300 | 1 | 234 | 1.47e-117 | 337 |
| Msa0516420 | MtrunA17_Chr3g0092141 | 47.321 | 112 | 53 | 1 | 193 | 298 | 59 | 170 | 4.04e-29 | 110 |
| Msa0516420 | MtrunA17_Chr4g0060761 | 45.370 | 108 | 50 | 1 | 198 | 296 | 160 | 267 | 2.01e-27 | 107 |
| Msa0516420 | MtrunA17_Chr5g0406901 | 37.719 | 114 | 58 | 1 | 193 | 293 | 201 | 314 | 1.46e-19 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516420 | AT5G53040.1 | 52.381 | 105 | 50 | 0 | 193 | 297 | 148 | 252 | 2.74e-32 | 120 |
| Msa0516420 | AT5G66990.1 | 49.550 | 111 | 45 | 1 | 198 | 297 | 164 | 274 | 2.00e-31 | 119 |
| Msa0516420 | AT1G18790.1 | 44.094 | 127 | 54 | 2 | 178 | 294 | 120 | 239 | 6.73e-28 | 109 |
| Msa0516420 | AT1G74480.1 | 46.364 | 110 | 49 | 1 | 191 | 290 | 133 | 242 | 4.07e-27 | 107 |
| Msa0516420 | AT4G35590.2 | 33.824 | 136 | 70 | 2 | 179 | 294 | 171 | 306 | 1.16e-17 | 82.0 |
| Msa0516420 | AT4G35590.1 | 33.824 | 136 | 70 | 2 | 179 | 294 | 221 | 356 | 1.69e-17 | 82.4 |
| Msa0516420 | AT5G16100.2 | 38.462 | 91 | 48 | 1 | 187 | 269 | 348 | 438 | 2.49e-12 | 67.4 |
Find 54 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGTAAAGCAACATTTA+AGG | 0.169846 | 3_4:+67925086 | None:intergenic |
| CATTGCAATTTGATGATATA+AGG | 0.198698 | 3_4:-67924765 | Msa0516420:CDS |
| TCGGTGTAATGCCCCATTTC+AGG | 0.239025 | 3_4:+67925069 | None:intergenic |
| AAATGTTGCTTTACCTGAAA+TGG | 0.239415 | 3_4:-67925082 | Msa0516420:CDS |
| TCTTCATTCAATTCCATTTC+AGG | 0.242189 | 3_4:+67924278 | None:intergenic |
| TTGTAGCCTTGAGCGATTTC+AGG | 0.264499 | 3_4:+67925691 | None:intergenic |
| GCCTTGAGCGATTTCAGGTT+GGG | 0.343692 | 3_4:+67925696 | None:intergenic |
| AACTACTTTGATCAAGGTAT+TGG | 0.343714 | 3_4:+67925127 | None:intergenic |
| TCAGGTAAAGCAACATTTAA+GGG | 0.355156 | 3_4:+67925087 | None:intergenic |
| AATGTTGCTTTACCTGAAAT+GGG | 0.356567 | 3_4:-67925081 | Msa0516420:CDS |
| TTGTGAACAAACAAGAGAAA+TGG | 0.359147 | 3_4:-67924975 | Msa0516420:CDS |
| ATGATTTCATTGAGTTTGAT+TGG | 0.364629 | 3_4:-67925233 | Msa0516420:CDS |
| GCTTACTTGTCTGTGTTGTT+TGG | 0.372451 | 3_4:+67925643 | None:intergenic |
| AGCAATACTCTTCCCTTTGT+CGG | 0.387658 | 3_4:+67925050 | None:intergenic |
| GTTGAGGCTTCCAAGAAAAC+AGG | 0.393183 | 3_4:-67925015 | Msa0516420:CDS |
| CCCTGCATCTATTCTTCAAA+AGG | 0.394587 | 3_4:+67924686 | None:intergenic |
| GTTAGAGAAACTTCCTGAAA+TGG | 0.395826 | 3_4:-67924291 | Msa0516420:CDS |
| GAGTGGATTTGTTGAAGCTT+CGG | 0.430431 | 3_4:-67924911 | Msa0516420:CDS |
| TGTTGTGTGATGCAGGAAAT+GGG | 0.433682 | 3_4:-67924356 | Msa0516420:intron |
| GGCAAACGAGGTTGCTATGA+TGG | 0.435987 | 3_4:-67924330 | Msa0516420:CDS |
| TGTGAACAAACAAGAGAAAT+GGG | 0.437906 | 3_4:-67924974 | Msa0516420:CDS |
| TGTACTCATCGACAACCTTA+AGG | 0.442882 | 3_4:-67924617 | Msa0516420:intron |
| GTACTAGAACTAGTATCATA+AGG | 0.476033 | 3_4:-67924801 | Msa0516420:CDS |
| AACTCAATGAAATCATCAAA+TGG | 0.477184 | 3_4:+67925240 | None:intergenic |
| AAATCGCTCAAGGCTACAAC+TGG | 0.479818 | 3_4:-67925687 | Msa0516420:CDS |
| CTGCTACTTGGCAATGGTAG+TGG | 0.480934 | 3_4:+67924823 | None:intergenic |
| TGATTTCATTGAGTTTGATT+GGG | 0.486276 | 3_4:-67925232 | Msa0516420:CDS |
| CTAGTTCTAGTACTGCTACT+TGG | 0.488715 | 3_4:+67924811 | None:intergenic |
| GGGAGCTCAACATCACTAGA+TGG | 0.489772 | 3_4:-67924666 | Msa0516420:CDS |
| AGGTTGAAGCTCAAGGGTTG+AGG | 0.489859 | 3_4:+67924195 | None:intergenic |
| TGTGATGCAGGAAATGGGTT+TGG | 0.499818 | 3_4:-67924351 | Msa0516420:intron |
| TTGTGAAGAAAGAGGTTGAA+GGG | 0.507686 | 3_4:-67924861 | Msa0516420:CDS |
| TCTCAAAACTACTTTGATCA+AGG | 0.511922 | 3_4:+67925121 | None:intergenic |
| CTATGATGGAGAAGAAGAAA+AGG | 0.520048 | 3_4:-67924316 | Msa0516420:CDS |
| AAGATCATTGAACCACCCAT+TGG | 0.537266 | 3_4:+67925173 | None:intergenic |
| AGCCTTGAGCGATTTCAGGT+TGG | 0.544838 | 3_4:+67925695 | None:intergenic |
| TTTGTGAAGAAAGAGGTTGA+AGG | 0.545050 | 3_4:-67924862 | Msa0516420:CDS |
| GGTTGAAGCTCAAGGGTTGA+GGG | 0.549829 | 3_4:+67924196 | None:intergenic |
| TGTGAAGAAAGAGGTTGAAG+GGG | 0.555743 | 3_4:-67924860 | Msa0516420:CDS |
| ATGGGGCATTACACCGACAA+AGG | 0.558093 | 3_4:-67925063 | Msa0516420:CDS |
| TGGGGCATTACACCGACAAA+GGG | 0.567564 | 3_4:-67925062 | Msa0516420:CDS |
| GAACTAGTATCATAAGGAAG+AGG | 0.575464 | 3_4:-67924795 | Msa0516420:CDS |
| CTAGTACTGCTACTTGGCAA+TGG | 0.587993 | 3_4:+67924817 | None:intergenic |
| CCTGCATCTATTCTTCAAAA+GGG | 0.589493 | 3_4:+67924687 | None:intergenic |
| ACATTGAGTGCTGCTGAGAG+TGG | 0.594289 | 3_4:-67924928 | Msa0516420:CDS |
| GGGAAGAGTATTGCTGAGAG+TGG | 0.605279 | 3_4:-67925042 | Msa0516420:CDS |
| GGAAATGGGTTTGGCAAACG+AGG | 0.606744 | 3_4:-67924342 | Msa0516420:CDS |
| ACCCAACCTGAAATCGCTCA+AGG | 0.612787 | 3_4:-67925697 | Msa0516420:CDS |
| ATGTTGCTTTACCTGAAATG+GGG | 0.616338 | 3_4:-67925080 | Msa0516420:CDS |
| GATGGCCTCACAGAAAATTG+AGG | 0.623093 | 3_4:-67924648 | Msa0516420:CDS |
| ATGAAGAAATCAAGAAGCTG+AGG | 0.626377 | 3_4:-67924262 | Msa0516420:CDS |
| GCTGCTAAGAAAATGAATGT+TGG | 0.631864 | 3_4:-67924715 | Msa0516420:CDS |
| GCACTCAATGTCAATGACAG+TGG | 0.693921 | 3_4:+67924940 | None:intergenic |
| AGGTTGGGTGAAGAACTCCA+TGG | 0.704568 | 3_4:+67925711 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAAAAAAGTTAAAAAA+AGG | + | chr3_4:67924613-67924632 | None:intergenic | 10.0% |
| !!! | TAAATAATTTTTTTATCAAC+TGG | - | chr3_4:67925515-67925534 | Msa0516420:intron | 10.0% |
| !! | CAAAAAAAAAAGTTAAAAAA+AGG | + | chr3_4:67924613-67924632 | None:intergenic | 10.0% |
| !!! | TAAATAATTTTTTTATCAAC+TGG | - | chr3_4:67925515-67925534 | Msa0516420:intron | 10.0% |
| !! | GTAAAAAACAAAACAAGTTA+GGG | + | chr3_4:67924391-67924410 | None:intergenic | 20.0% |
| !! | TTTATCTATTACTTTGACTA+TGG | - | chr3_4:67924429-67924448 | Msa0516420:intron | 20.0% |
| !! | AAAGTTAAAAAAAGGGAAAA+CGG | + | chr3_4:67924605-67924624 | None:intergenic | 20.0% |
| !!! | TTTTGATGTTCCTTTAAAAA+TGG | - | chr3_4:67925177-67925196 | Msa0516420:CDS | 20.0% |
| !! | AACATAAAGAATATACCTTA+AGG | + | chr3_4:67925315-67925334 | None:intergenic | 20.0% |
| !! | GTAAAAAACAAAACAAGTTA+GGG | + | chr3_4:67924391-67924410 | None:intergenic | 20.0% |
| !! | TTTATCTATTACTTTGACTA+TGG | - | chr3_4:67924429-67924448 | Msa0516420:intron | 20.0% |
| !! | AAAGTTAAAAAAAGGGAAAA+CGG | + | chr3_4:67924605-67924624 | None:intergenic | 20.0% |
| !!! | TTTTGATGTTCCTTTAAAAA+TGG | - | chr3_4:67925177-67925196 | Msa0516420:CDS | 20.0% |
| !! | AACATAAAGAATATACCTTA+AGG | + | chr3_4:67925315-67925334 | None:intergenic | 20.0% |
| ! | GGTAAAAAACAAAACAAGTT+AGG | + | chr3_4:67924392-67924411 | None:intergenic | 25.0% |
| ! | TAAAAATCGAATAAGAACAG+AGG | + | chr3_4:67924413-67924432 | None:intergenic | 25.0% |
| !! | TTTTAATGTGTACAGAATCA+TGG | - | chr3_4:67924643-67924662 | Msa0516420:CDS | 25.0% |
| ! | AACTCAATGAAATCATCAAA+TGG | + | chr3_4:67924677-67924696 | None:intergenic | 25.0% |
| ! | ATGATTTCATTGAGTTTGAT+TGG | - | chr3_4:67924681-67924700 | Msa0516420:CDS | 25.0% |
| ! | TGATTTCATTGAGTTTGATT+GGG | - | chr3_4:67924682-67924701 | Msa0516420:CDS | 25.0% |
| ! | TGGTGTAAAAATGATTACTT+TGG | + | chr3_4:67924724-67924743 | None:intergenic | 25.0% |
| !!! | AGTAATCATTTTTACACCAA+TGG | - | chr3_4:67924725-67924744 | Msa0516420:CDS | 25.0% |
| !!! | GTAATCATTTTTACACCAAT+GGG | - | chr3_4:67924726-67924745 | Msa0516420:CDS | 25.0% |
| !! | CATTGCAATTTGATGATATA+AGG | - | chr3_4:67925149-67925168 | Msa0516420:CDS | 25.0% |
| !! | TTTGAAGTACTTAACAATGT+GGG | + | chr3_4:67925350-67925369 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTACTTAACAATG+TGG | + | chr3_4:67925351-67925370 | None:intergenic | 25.0% |
| ! | TTCCTAACATTATCTTTGTT+TGG | - | chr3_4:67925371-67925390 | Msa0516420:intron | 25.0% |
| ! | ATCCAAACAAAGATAATGTT+AGG | + | chr3_4:67925376-67925395 | None:intergenic | 25.0% |
| ! | TTTCAATTGTCATTCAAAGT+GGG | + | chr3_4:67925434-67925453 | None:intergenic | 25.0% |
| ! | ATTTCAATTGTCATTCAAAG+TGG | + | chr3_4:67925435-67925454 | None:intergenic | 25.0% |
| !!! | TTTTTTTATCAACTGGTCAT+AGG | - | chr3_4:67925522-67925541 | Msa0516420:intron | 25.0% |
| ! | GGTAAAAAACAAAACAAGTT+AGG | + | chr3_4:67924392-67924411 | None:intergenic | 25.0% |
| ! | TAAAAATCGAATAAGAACAG+AGG | + | chr3_4:67924413-67924432 | None:intergenic | 25.0% |
| !! | TTTTAATGTGTACAGAATCA+TGG | - | chr3_4:67924643-67924662 | Msa0516420:CDS | 25.0% |
| ! | AACTCAATGAAATCATCAAA+TGG | + | chr3_4:67924677-67924696 | None:intergenic | 25.0% |
| ! | ATGATTTCATTGAGTTTGAT+TGG | - | chr3_4:67924681-67924700 | Msa0516420:CDS | 25.0% |
| ! | TGATTTCATTGAGTTTGATT+GGG | - | chr3_4:67924682-67924701 | Msa0516420:CDS | 25.0% |
| ! | TGGTGTAAAAATGATTACTT+TGG | + | chr3_4:67924724-67924743 | None:intergenic | 25.0% |
| !!! | AGTAATCATTTTTACACCAA+TGG | - | chr3_4:67924725-67924744 | Msa0516420:CDS | 25.0% |
| !!! | GTAATCATTTTTACACCAAT+GGG | - | chr3_4:67924726-67924745 | Msa0516420:CDS | 25.0% |
| !! | CATTGCAATTTGATGATATA+AGG | - | chr3_4:67925149-67925168 | Msa0516420:CDS | 25.0% |
| !! | TTTGAAGTACTTAACAATGT+GGG | + | chr3_4:67925350-67925369 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTACTTAACAATG+TGG | + | chr3_4:67925351-67925370 | None:intergenic | 25.0% |
| ! | TTCCTAACATTATCTTTGTT+TGG | - | chr3_4:67925371-67925390 | Msa0516420:intron | 25.0% |
| ! | ATCCAAACAAAGATAATGTT+AGG | + | chr3_4:67925376-67925395 | None:intergenic | 25.0% |
| ! | TTTCAATTGTCATTCAAAGT+GGG | + | chr3_4:67925434-67925453 | None:intergenic | 25.0% |
| ! | ATTTCAATTGTCATTCAAAG+TGG | + | chr3_4:67925435-67925454 | None:intergenic | 25.0% |
| !!! | TTTTTTTATCAACTGGTCAT+AGG | - | chr3_4:67925522-67925541 | Msa0516420:intron | 25.0% |
| AAAGAATGAACATCGAATCA+TGG | + | chr3_4:67924322-67924341 | None:intergenic | 30.0% | |
| AACTACTTTGATCAAGGTAT+TGG | + | chr3_4:67924790-67924809 | None:intergenic | 30.0% | |
| TCTCAAAACTACTTTGATCA+AGG | + | chr3_4:67924796-67924815 | None:intergenic | 30.0% | |
| TCAGGTAAAGCAACATTTAA+GGG | + | chr3_4:67924830-67924849 | None:intergenic | 30.0% | |
| TTCAGGTAAAGCAACATTTA+AGG | + | chr3_4:67924831-67924850 | None:intergenic | 30.0% | |
| !! | AAATGTTGCTTTACCTGAAA+TGG | - | chr3_4:67924832-67924851 | Msa0516420:CDS | 30.0% |
| !! | AATGTTGCTTTACCTGAAAT+GGG | - | chr3_4:67924833-67924852 | Msa0516420:CDS | 30.0% |
| !! | AAACTGATTTCCTGTTTTCT+TGG | + | chr3_4:67924912-67924931 | None:intergenic | 30.0% |
| TTGTGAACAAACAAGAGAAA+TGG | - | chr3_4:67924939-67924958 | Msa0516420:CDS | 30.0% | |
| TGTGAACAAACAAGAGAAAT+GGG | - | chr3_4:67924940-67924959 | Msa0516420:CDS | 30.0% | |
| GTACTAGAACTAGTATCATA+AGG | - | chr3_4:67925113-67925132 | Msa0516420:CDS | 30.0% | |
| !!! | TTCTTAGCAGCCATTTTTAA+AGG | + | chr3_4:67925190-67925209 | None:intergenic | 30.0% |
| ! | TTGAAGTACTTAACAATGTG+GGG | + | chr3_4:67925349-67925368 | None:intergenic | 30.0% |
| TGAAACTTGAAACTGTAGTT+TGG | - | chr3_4:67925461-67925480 | Msa0516420:intron | 30.0% | |
| GAAACTTGAAACTGTAGTTT+GGG | - | chr3_4:67925462-67925481 | Msa0516420:intron | 30.0% | |
| !! | ATTATTTTGTTGTGTGATGC+AGG | - | chr3_4:67925551-67925570 | Msa0516420:intron | 30.0% |
| TCTTCATTCAATTCCATTTC+AGG | + | chr3_4:67925639-67925658 | None:intergenic | 30.0% | |
| AAAGAATGAACATCGAATCA+TGG | + | chr3_4:67924322-67924341 | None:intergenic | 30.0% | |
| AACTACTTTGATCAAGGTAT+TGG | + | chr3_4:67924790-67924809 | None:intergenic | 30.0% | |
| TCTCAAAACTACTTTGATCA+AGG | + | chr3_4:67924796-67924815 | None:intergenic | 30.0% | |
| TCAGGTAAAGCAACATTTAA+GGG | + | chr3_4:67924830-67924849 | None:intergenic | 30.0% | |
| TTCAGGTAAAGCAACATTTA+AGG | + | chr3_4:67924831-67924850 | None:intergenic | 30.0% | |
| !! | AAATGTTGCTTTACCTGAAA+TGG | - | chr3_4:67924832-67924851 | Msa0516420:CDS | 30.0% |
| !! | AATGTTGCTTTACCTGAAAT+GGG | - | chr3_4:67924833-67924852 | Msa0516420:CDS | 30.0% |
| !! | AAACTGATTTCCTGTTTTCT+TGG | + | chr3_4:67924912-67924931 | None:intergenic | 30.0% |
| TTGTGAACAAACAAGAGAAA+TGG | - | chr3_4:67924939-67924958 | Msa0516420:CDS | 30.0% | |
| TGTGAACAAACAAGAGAAAT+GGG | - | chr3_4:67924940-67924959 | Msa0516420:CDS | 30.0% | |
| GTACTAGAACTAGTATCATA+AGG | - | chr3_4:67925113-67925132 | Msa0516420:CDS | 30.0% | |
| !!! | TTCTTAGCAGCCATTTTTAA+AGG | + | chr3_4:67925190-67925209 | None:intergenic | 30.0% |
| ! | TTGAAGTACTTAACAATGTG+GGG | + | chr3_4:67925349-67925368 | None:intergenic | 30.0% |
| TGAAACTTGAAACTGTAGTT+TGG | - | chr3_4:67925461-67925480 | Msa0516420:intron | 30.0% | |
| GAAACTTGAAACTGTAGTTT+GGG | - | chr3_4:67925462-67925481 | Msa0516420:intron | 30.0% | |
| !! | ATTATTTTGTTGTGTGATGC+AGG | - | chr3_4:67925551-67925570 | Msa0516420:intron | 30.0% |
| TCTTCATTCAATTCCATTTC+AGG | + | chr3_4:67925639-67925658 | None:intergenic | 30.0% | |
| CATGGTTGTTGAAATGAAAC+TGG | + | chr3_4:67924304-67924323 | None:intergenic | 35.0% | |
| AGTTAGGGTGATGTAGATTA+AGG | + | chr3_4:67924376-67924395 | None:intergenic | 35.0% | |
| AATGTTCCACACATCATTCT+CGG | + | chr3_4:67924524-67924543 | None:intergenic | 35.0% | |
| !! | ATCATTTTTACACCAATGGG+TGG | - | chr3_4:67924729-67924748 | Msa0516420:CDS | 35.0% |
| !! | ATGTTGCTTTACCTGAAATG+GGG | - | chr3_4:67924834-67924853 | Msa0516420:CDS | 35.0% |
| ! | AAAAACTGAAAGTGGGTTTG+TGG | - | chr3_4:67925027-67925046 | Msa0516420:CDS | 35.0% |
| ! | TGTGGATTTTGTGAAGAAAG+AGG | - | chr3_4:67925045-67925064 | Msa0516420:CDS | 35.0% |
| TTTGTGAAGAAAGAGGTTGA+AGG | - | chr3_4:67925052-67925071 | Msa0516420:CDS | 35.0% | |
| TTGTGAAGAAAGAGGTTGAA+GGG | - | chr3_4:67925053-67925072 | Msa0516420:CDS | 35.0% | |
| GAACTAGTATCATAAGGAAG+AGG | - | chr3_4:67925119-67925138 | Msa0516420:CDS | 35.0% | |
| GCTGCTAAGAAAATGAATGT+TGG | - | chr3_4:67925199-67925218 | Msa0516420:CDS | 35.0% | |
| CCTGCATCTATTCTTCAAAA+GGG | + | chr3_4:67925230-67925249 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATAGATGCA+GGG | - | chr3_4:67925228-67925247 | Msa0516420:CDS | 35.0% |
| ! | TGAAGTACTTAACAATGTGG+GGG | + | chr3_4:67925348-67925367 | None:intergenic | 35.0% |
| GAGCATTAGACTCAAATTGT+AGG | - | chr3_4:67925401-67925420 | Msa0516420:intron | 35.0% | |
| ! | CTATGATGGAGAAGAAGAAA+AGG | - | chr3_4:67925598-67925617 | Msa0516420:intron | 35.0% |
| GTTAGAGAAACTTCCTGAAA+TGG | - | chr3_4:67925623-67925642 | Msa0516420:intron | 35.0% | |
| ATGAAGAAATCAAGAAGCTG+AGG | - | chr3_4:67925652-67925671 | Msa0516420:CDS | 35.0% | |
| CATGGTTGTTGAAATGAAAC+TGG | + | chr3_4:67924304-67924323 | None:intergenic | 35.0% | |
| AGTTAGGGTGATGTAGATTA+AGG | + | chr3_4:67924376-67924395 | None:intergenic | 35.0% | |
| AATGTTCCACACATCATTCT+CGG | + | chr3_4:67924524-67924543 | None:intergenic | 35.0% | |
| !! | ATCATTTTTACACCAATGGG+TGG | - | chr3_4:67924729-67924748 | Msa0516420:CDS | 35.0% |
| !! | ATGTTGCTTTACCTGAAATG+GGG | - | chr3_4:67924834-67924853 | Msa0516420:CDS | 35.0% |
| ! | AAAAACTGAAAGTGGGTTTG+TGG | - | chr3_4:67925027-67925046 | Msa0516420:CDS | 35.0% |
| ! | TGTGGATTTTGTGAAGAAAG+AGG | - | chr3_4:67925045-67925064 | Msa0516420:CDS | 35.0% |
| TTTGTGAAGAAAGAGGTTGA+AGG | - | chr3_4:67925052-67925071 | Msa0516420:CDS | 35.0% | |
| TTGTGAAGAAAGAGGTTGAA+GGG | - | chr3_4:67925053-67925072 | Msa0516420:CDS | 35.0% | |
| GAACTAGTATCATAAGGAAG+AGG | - | chr3_4:67925119-67925138 | Msa0516420:CDS | 35.0% | |
| GCTGCTAAGAAAATGAATGT+TGG | - | chr3_4:67925199-67925218 | Msa0516420:CDS | 35.0% | |
| CCTGCATCTATTCTTCAAAA+GGG | + | chr3_4:67925230-67925249 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATAGATGCA+GGG | - | chr3_4:67925228-67925247 | Msa0516420:CDS | 35.0% |
| ! | TGAAGTACTTAACAATGTGG+GGG | + | chr3_4:67925348-67925367 | None:intergenic | 35.0% |
| GAGCATTAGACTCAAATTGT+AGG | - | chr3_4:67925401-67925420 | Msa0516420:intron | 35.0% | |
| ! | CTATGATGGAGAAGAAGAAA+AGG | - | chr3_4:67925598-67925617 | Msa0516420:intron | 35.0% |
| GTTAGAGAAACTTCCTGAAA+TGG | - | chr3_4:67925623-67925642 | Msa0516420:intron | 35.0% | |
| ATGAAGAAATCAAGAAGCTG+AGG | - | chr3_4:67925652-67925671 | Msa0516420:CDS | 35.0% | |
| ! | GCTTACTTGTCTGTGTTGTT+TGG | + | chr3_4:67924274-67924293 | None:intergenic | 40.0% |
| ATCAACCTCGAAAGTCGTAA+CGG | + | chr3_4:67924548-67924567 | None:intergenic | 40.0% | |
| AAGATCATTGAACCACCCAT+TGG | + | chr3_4:67924744-67924763 | None:intergenic | 40.0% | |
| AGCAATACTCTTCCCTTTGT+CGG | + | chr3_4:67924867-67924886 | None:intergenic | 40.0% | |
| !! | GAGTGGATTTGTTGAAGCTT+CGG | - | chr3_4:67925003-67925022 | Msa0516420:CDS | 40.0% |
| CTTCGGCAAAAACTGAAAGT+GGG | - | chr3_4:67925020-67925039 | Msa0516420:CDS | 40.0% | |
| TGTGAAGAAAGAGGTTGAAG+GGG | - | chr3_4:67925054-67925073 | Msa0516420:CDS | 40.0% | |
| !! | CTAGTTCTAGTACTGCTACT+TGG | + | chr3_4:67925106-67925125 | None:intergenic | 40.0% |
| !! | CCCTTTTGAAGAATAGATGC+AGG | - | chr3_4:67925227-67925246 | Msa0516420:CDS | 40.0% |
| CCCTGCATCTATTCTTCAAA+AGG | + | chr3_4:67925231-67925250 | None:intergenic | 40.0% | |
| ! | AAGCTCCTCAATTTTCTGTG+AGG | + | chr3_4:67925274-67925293 | None:intergenic | 40.0% |
| TGTACTCATCGACAACCTTA+AGG | - | chr3_4:67925297-67925316 | Msa0516420:intron | 40.0% | |
| ! | GAAGTACTTAACAATGTGGG+GGG | + | chr3_4:67925347-67925366 | None:intergenic | 40.0% |
| TAGACTCAAATTGTAGGACC+AGG | - | chr3_4:67925407-67925426 | Msa0516420:intron | 40.0% | |
| ACTTGAAACTGTAGTTTGGG+TGG | - | chr3_4:67925465-67925484 | Msa0516420:intron | 40.0% | |
| !! | TTTGGGTGGAGCATTTTTGT+TGG | - | chr3_4:67925479-67925498 | Msa0516420:intron | 40.0% |
| TTGTTGTGTGATGCAGGAAA+TGG | - | chr3_4:67925557-67925576 | Msa0516420:intron | 40.0% | |
| TGTTGTGTGATGCAGGAAAT+GGG | - | chr3_4:67925558-67925577 | Msa0516420:intron | 40.0% | |
| ! | GCTTACTTGTCTGTGTTGTT+TGG | + | chr3_4:67924274-67924293 | None:intergenic | 40.0% |
| ATCAACCTCGAAAGTCGTAA+CGG | + | chr3_4:67924548-67924567 | None:intergenic | 40.0% | |
| AAGATCATTGAACCACCCAT+TGG | + | chr3_4:67924744-67924763 | None:intergenic | 40.0% | |
| AGCAATACTCTTCCCTTTGT+CGG | + | chr3_4:67924867-67924886 | None:intergenic | 40.0% | |
| !! | GAGTGGATTTGTTGAAGCTT+CGG | - | chr3_4:67925003-67925022 | Msa0516420:CDS | 40.0% |
| CTTCGGCAAAAACTGAAAGT+GGG | - | chr3_4:67925020-67925039 | Msa0516420:CDS | 40.0% | |
| TGTGAAGAAAGAGGTTGAAG+GGG | - | chr3_4:67925054-67925073 | Msa0516420:CDS | 40.0% | |
| !! | CTAGTTCTAGTACTGCTACT+TGG | + | chr3_4:67925106-67925125 | None:intergenic | 40.0% |
| !! | CCCTTTTGAAGAATAGATGC+AGG | - | chr3_4:67925227-67925246 | Msa0516420:CDS | 40.0% |
| CCCTGCATCTATTCTTCAAA+AGG | + | chr3_4:67925231-67925250 | None:intergenic | 40.0% | |
| ! | AAGCTCCTCAATTTTCTGTG+AGG | + | chr3_4:67925274-67925293 | None:intergenic | 40.0% |
| TGTACTCATCGACAACCTTA+AGG | - | chr3_4:67925297-67925316 | Msa0516420:intron | 40.0% | |
| ! | GAAGTACTTAACAATGTGGG+GGG | + | chr3_4:67925347-67925366 | None:intergenic | 40.0% |
| TAGACTCAAATTGTAGGACC+AGG | - | chr3_4:67925407-67925426 | Msa0516420:intron | 40.0% | |
| ACTTGAAACTGTAGTTTGGG+TGG | - | chr3_4:67925465-67925484 | Msa0516420:intron | 40.0% | |
| !! | TTTGGGTGGAGCATTTTTGT+TGG | - | chr3_4:67925479-67925498 | Msa0516420:intron | 40.0% |
| TTGTTGTGTGATGCAGGAAA+TGG | - | chr3_4:67925557-67925576 | Msa0516420:intron | 40.0% | |
| TGTTGTGTGATGCAGGAAAT+GGG | - | chr3_4:67925558-67925577 | Msa0516420:intron | 40.0% | |
| ! | TTGTAGCCTTGAGCGATTTC+AGG | + | chr3_4:67924226-67924245 | None:intergenic | 45.0% |
| AAATCGCTCAAGGCTACAAC+TGG | - | chr3_4:67924227-67924246 | Msa0516420:CDS | 45.0% | |
| AGTCTTCCGAGAATGATGTG+TGG | - | chr3_4:67924515-67924534 | Msa0516420:intron | 45.0% | |
| !!! | TGCTGAGAGTGGTTTTGTTG+AGG | - | chr3_4:67924883-67924902 | Msa0516420:CDS | 45.0% |
| GTTGAGGCTTCCAAGAAAAC+AGG | - | chr3_4:67924899-67924918 | Msa0516420:CDS | 45.0% | |
| GCACTCAATGTCAATGACAG+TGG | + | chr3_4:67924977-67924996 | None:intergenic | 45.0% | |
| GCTTCGGCAAAAACTGAAAG+TGG | - | chr3_4:67925019-67925038 | Msa0516420:CDS | 45.0% | |
| ! | CTAGTACTGCTACTTGGCAA+TGG | + | chr3_4:67925100-67925119 | None:intergenic | 45.0% |
| GATGGCCTCACAGAAAATTG+AGG | - | chr3_4:67925266-67925285 | Msa0516420:intron | 45.0% | |
| TTGTCATTCAAAGTGGGTCC+TGG | + | chr3_4:67925428-67925447 | None:intergenic | 45.0% | |
| ! | TGTGATGCAGGAAATGGGTT+TGG | - | chr3_4:67925563-67925582 | Msa0516420:intron | 45.0% |
| ! | TTGTAGCCTTGAGCGATTTC+AGG | + | chr3_4:67924226-67924245 | None:intergenic | 45.0% |
| AAATCGCTCAAGGCTACAAC+TGG | - | chr3_4:67924227-67924246 | Msa0516420:CDS | 45.0% | |
| AGTCTTCCGAGAATGATGTG+TGG | - | chr3_4:67924515-67924534 | Msa0516420:intron | 45.0% | |
| !!! | TGCTGAGAGTGGTTTTGTTG+AGG | - | chr3_4:67924883-67924902 | Msa0516420:CDS | 45.0% |
| GTTGAGGCTTCCAAGAAAAC+AGG | - | chr3_4:67924899-67924918 | Msa0516420:CDS | 45.0% | |
| GCACTCAATGTCAATGACAG+TGG | + | chr3_4:67924977-67924996 | None:intergenic | 45.0% | |
| GCTTCGGCAAAAACTGAAAG+TGG | - | chr3_4:67925019-67925038 | Msa0516420:CDS | 45.0% | |
| ! | CTAGTACTGCTACTTGGCAA+TGG | + | chr3_4:67925100-67925119 | None:intergenic | 45.0% |
| GATGGCCTCACAGAAAATTG+AGG | - | chr3_4:67925266-67925285 | Msa0516420:intron | 45.0% | |
| TTGTCATTCAAAGTGGGTCC+TGG | + | chr3_4:67925428-67925447 | None:intergenic | 45.0% | |
| ! | TGTGATGCAGGAAATGGGTT+TGG | - | chr3_4:67925563-67925582 | Msa0516420:intron | 45.0% |
| !! | AAAAAAAAAAGTTAAAAAAA+GGG | + | chr3_4:67924612-67924631 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAGTTAAAAAAA+GGG | + | chr3_4:67924612-67924631 | None:intergenic | 5.0% |
| ACCCAACCTGAAATCGCTCA+AGG | - | chr3_4:67924217-67924236 | Msa0516420:CDS | 50.0% | |
| !! | GCCTTGAGCGATTTCAGGTT+GGG | + | chr3_4:67924221-67924240 | None:intergenic | 50.0% |
| ! | AGCCTTGAGCGATTTCAGGT+TGG | + | chr3_4:67924222-67924241 | None:intergenic | 50.0% |
| CATTGCCGTTACGACTTTCG+AGG | - | chr3_4:67924540-67924559 | Msa0516420:intron | 50.0% | |
| TCGGTGTAATGCCCCATTTC+AGG | + | chr3_4:67924848-67924867 | None:intergenic | 50.0% | |
| ! | ATGGGGCATTACACCGACAA+AGG | - | chr3_4:67924851-67924870 | Msa0516420:CDS | 50.0% |
| ! | TGGGGCATTACACCGACAAA+GGG | - | chr3_4:67924852-67924871 | Msa0516420:CDS | 50.0% |
| !! | GGGAAGAGTATTGCTGAGAG+TGG | - | chr3_4:67924872-67924891 | Msa0516420:CDS | 50.0% |
| ! | ACATTGAGTGCTGCTGAGAG+TGG | - | chr3_4:67924986-67925005 | Msa0516420:CDS | 50.0% |
| ! | CTGCTACTTGGCAATGGTAG+TGG | + | chr3_4:67925094-67925113 | None:intergenic | 50.0% |
| GGGAGCTCAACATCACTAGA+TGG | - | chr3_4:67925248-67925267 | Msa0516420:CDS | 50.0% | |
| ! | GGAAATGGGTTTGGCAAACG+AGG | - | chr3_4:67925572-67925591 | Msa0516420:intron | 50.0% |
| GGCAAACGAGGTTGCTATGA+TGG | - | chr3_4:67925584-67925603 | Msa0516420:intron | 50.0% | |
| ACCCAACCTGAAATCGCTCA+AGG | - | chr3_4:67924217-67924236 | Msa0516420:CDS | 50.0% | |
| !! | GCCTTGAGCGATTTCAGGTT+GGG | + | chr3_4:67924221-67924240 | None:intergenic | 50.0% |
| ! | AGCCTTGAGCGATTTCAGGT+TGG | + | chr3_4:67924222-67924241 | None:intergenic | 50.0% |
| CATTGCCGTTACGACTTTCG+AGG | - | chr3_4:67924540-67924559 | Msa0516420:intron | 50.0% | |
| TCGGTGTAATGCCCCATTTC+AGG | + | chr3_4:67924848-67924867 | None:intergenic | 50.0% | |
| ! | ATGGGGCATTACACCGACAA+AGG | - | chr3_4:67924851-67924870 | Msa0516420:CDS | 50.0% |
| ! | TGGGGCATTACACCGACAAA+GGG | - | chr3_4:67924852-67924871 | Msa0516420:CDS | 50.0% |
| !! | GGGAAGAGTATTGCTGAGAG+TGG | - | chr3_4:67924872-67924891 | Msa0516420:CDS | 50.0% |
| ! | ACATTGAGTGCTGCTGAGAG+TGG | - | chr3_4:67924986-67925005 | Msa0516420:CDS | 50.0% |
| ! | CTGCTACTTGGCAATGGTAG+TGG | + | chr3_4:67925094-67925113 | None:intergenic | 50.0% |
| GGGAGCTCAACATCACTAGA+TGG | - | chr3_4:67925248-67925267 | Msa0516420:CDS | 50.0% | |
| ! | GGAAATGGGTTTGGCAAACG+AGG | - | chr3_4:67925572-67925591 | Msa0516420:intron | 50.0% |
| GGCAAACGAGGTTGCTATGA+TGG | - | chr3_4:67925584-67925603 | Msa0516420:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 67924205 | 67925731 | 67924205 | ID=Msa0516420;Name=Msa0516420 |
| chr3_4 | mRNA | 67924205 | 67925731 | 67924205 | ID=Msa0516420-mRNA-1;Parent=Msa0516420;Name=Msa0516420-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|1|1|1|3|0|300 |
| chr3_4 | exon | 67925649 | 67925731 | 67925649 | ID=Msa0516420-mRNA-1:exon:17853;Parent=Msa0516420-mRNA-1 |
| chr3_4 | exon | 67924618 | 67925278 | 67924618 | ID=Msa0516420-mRNA-1:exon:17852;Parent=Msa0516420-mRNA-1 |
| chr3_4 | exon | 67924205 | 67924363 | 67924205 | ID=Msa0516420-mRNA-1:exon:17851;Parent=Msa0516420-mRNA-1 |
| chr3_4 | CDS | 67925649 | 67925731 | 67925649 | ID=Msa0516420-mRNA-1:cds;Parent=Msa0516420-mRNA-1 |
| chr3_4 | CDS | 67924618 | 67925278 | 67924618 | ID=Msa0516420-mRNA-1:cds;Parent=Msa0516420-mRNA-1 |
| chr3_4 | CDS | 67924205 | 67924363 | 67924205 | ID=Msa0516420-mRNA-1:cds;Parent=Msa0516420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
