Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516680 | XP_039687614.1 | 84.579 | 214 | 17 | 4 | 1 | 213 | 1 | 199 | 1.56e-107 | 339 |
| Msa0516680 | XP_039687614.1 | 95.076 | 264 | 12 | 1 | 201 | 464 | 279 | 541 | 1.12e-142 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516680 | sp|Q9FJB8|GRF7_ARATH | 38.000 | 300 | 136 | 13 | 126 | 395 | 57 | 336 | 1.66e-30 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516680 | A0A396IW83 | 83.178 | 214 | 18 | 6 | 1 | 213 | 1 | 197 | 1.49e-102 | 326 |
| Msa0516680 | A0A396IW83 | 95.076 | 264 | 12 | 1 | 201 | 464 | 277 | 539 | 7.60e-143 | 429 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0516680 | TF | GRF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516680 | MtrunA17_Chr3g0127641 | 95.076 | 264 | 12 | 1 | 201 | 464 | 277 | 539 | 1.46e-146 | 429 |
| Msa0516680 | MtrunA17_Chr3g0127641 | 83.178 | 214 | 18 | 6 | 1 | 213 | 1 | 197 | 2.87e-106 | 326 |
| Msa0516680 | MtrunA17_Chr1g0152191 | 42.748 | 131 | 48 | 3 | 103 | 208 | 117 | 245 | 1.26e-22 | 101 |
| Msa0516680 | MtrunA17_Chr4g0021261 | 45.161 | 93 | 35 | 1 | 128 | 204 | 25 | 117 | 4.01e-21 | 94.4 |
| Msa0516680 | MtrunA17_Chr5g0409471 | 51.220 | 82 | 33 | 2 | 126 | 201 | 14 | 94 | 1.13e-20 | 92.8 |
| Msa0516680 | MtrunA17_Chr8g0343881 | 39.785 | 93 | 39 | 1 | 129 | 204 | 12 | 104 | 4.34e-18 | 85.5 |
| Msa0516680 | MtrunA17_Chr4g0070591 | 42.553 | 94 | 37 | 2 | 128 | 204 | 9 | 102 | 1.01e-17 | 84.7 |
| Msa0516680 | MtrunA17_Chr2g0300511 | 40.816 | 98 | 37 | 2 | 128 | 204 | 7 | 104 | 2.06e-17 | 83.6 |
| Msa0516680 | MtrunA17_Chr7g0265931 | 37.719 | 114 | 51 | 3 | 109 | 204 | 60 | 171 | 1.90e-15 | 77.8 |
| Msa0516680 | MtrunA17_Chr8g0351521 | 42.353 | 85 | 46 | 2 | 127 | 208 | 53 | 137 | 5.44e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516680 | AT5G53660.1 | 38.000 | 300 | 136 | 13 | 126 | 395 | 57 | 336 | 1.69e-31 | 124 |
| Msa0516680 | AT4G37740.1 | 50.515 | 97 | 31 | 2 | 128 | 208 | 164 | 259 | 4.73e-23 | 102 |
| Msa0516680 | AT3G13960.1 | 45.918 | 98 | 36 | 1 | 124 | 204 | 12 | 109 | 8.03e-22 | 97.4 |
| Msa0516680 | AT2G22840.1 | 50.515 | 97 | 31 | 2 | 128 | 208 | 133 | 228 | 3.25e-20 | 94.0 |
| Msa0516680 | AT4G24150.3 | 41.129 | 124 | 47 | 4 | 102 | 204 | 90 | 208 | 7.78e-18 | 85.9 |
| Msa0516680 | AT4G24150.2 | 41.129 | 124 | 47 | 4 | 102 | 204 | 128 | 246 | 1.15e-17 | 85.5 |
| Msa0516680 | AT2G36400.1 | 44.330 | 97 | 32 | 2 | 129 | 204 | 77 | 172 | 1.67e-16 | 81.6 |
| Msa0516680 | AT2G06200.2 | 38.835 | 103 | 37 | 1 | 128 | 204 | 45 | 147 | 1.74e-16 | 80.1 |
| Msa0516680 | AT2G06200.1 | 39.806 | 103 | 36 | 2 | 128 | 204 | 6 | 108 | 1.92e-16 | 79.3 |
| Msa0516680 | AT3G52910.1 | 42.553 | 94 | 33 | 2 | 129 | 201 | 83 | 176 | 4.33e-15 | 77.0 |
Find 108 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAACACAAACTAACCTTTA+AGG | 0.146408 | 3_4:-68206803 | None:intergenic |
| GTGAAAAGGTTGAAAATTTA+AGG | 0.152843 | 3_4:-68206757 | None:intergenic |
| GCTTCCAACACAACCCTTAA+AGG | 0.155280 | 3_4:+68206789 | Msa0516680:CDS |
| TCCCTTGGTGCTTCTAATTC+AGG | 0.206328 | 3_4:+68208194 | Msa0516680:CDS |
| CTTTCACAGTACTTGTTATT+AGG | 0.229946 | 3_4:-68207434 | None:intergenic |
| GTCGAATCCATTGGCACTTC+AGG | 0.255897 | 3_4:+68208770 | Msa0516680:CDS |
| ACAACATACAACATGTCTTT+TGG | 0.266442 | 3_4:+68206681 | Msa0516680:CDS |
| TTAGAAGCACCAAGGGAAAT+TGG | 0.300986 | 3_4:-68208188 | None:intergenic |
| AACCTCTTGGTTTCTCAGAT+TGG | 0.311180 | 3_4:-68208394 | None:intergenic |
| GCCCTTGATGATGCAACATT+TGG | 0.323926 | 3_4:-68208875 | None:intergenic |
| TATGATTTACAAGTACTTGA+TGG | 0.325776 | 3_4:+68207021 | Msa0516680:CDS |
| TCAATCTGAGGCTATCAAAT+AGG | 0.341073 | 3_4:+68207336 | Msa0516680:CDS |
| AAACACAAACTAACCTTTAA+GGG | 0.361293 | 3_4:-68206802 | None:intergenic |
| ACTACTAGTGTTATTGTTGT+TGG | 0.363306 | 3_4:-68206511 | None:intergenic |
| GTCCACTAGCTGAAGTTCTA+AGG | 0.379508 | 3_4:+68208675 | Msa0516680:CDS |
| ATGATTAAACTTATTGAGTA+AGG | 0.386331 | 3_4:-68208912 | None:intergenic |
| GCTAATGCTATCATTGATAA+TGG | 0.393717 | 3_4:+68206726 | Msa0516680:CDS |
| ATGGCGGCTTCAATAGGAAT+AGG | 0.401179 | 3_4:+68206950 | Msa0516680:CDS |
| TTCATCACTTGATCTATCAA+TGG | 0.407184 | 3_4:+68208523 | Msa0516680:CDS |
| GGATTCAGTGTTATTATGAT+AGG | 0.411587 | 3_4:-68208267 | None:intergenic |
| GCTGTTGATGCTGAAGGTTA+TGG | 0.416004 | 3_4:+68206654 | Msa0516680:CDS |
| CTTCTGCACCTACCAGCCTC+TGG | 0.433695 | 3_4:-68207371 | None:intergenic |
| GGTGGAATGGCGGCTTCAAT+AGG | 0.433909 | 3_4:+68206944 | Msa0516680:CDS |
| ACCATTGTTGGAGGTGGTGG+TGG | 0.435162 | 3_4:-68208474 | None:intergenic |
| CTCCTTTCACAATTGCTCAA+TGG | 0.446940 | 3_4:+68206978 | Msa0516680:CDS |
| GGATTAAGTAAGAGAGGAAA+GGG | 0.448727 | 3_4:-68208347 | None:intergenic |
| ATTGTTGGAGGTGGTGGTGG+TGG | 0.456677 | 3_4:-68208471 | None:intergenic |
| CTGATGCATAACAACAAACT+TGG | 0.457493 | 3_4:+68208227 | Msa0516680:CDS |
| GGCTCAATCCAGCACAACCT+TGG | 0.462541 | 3_4:+68208633 | Msa0516680:CDS |
| AACTGATGCAGAACCATTGT+TGG | 0.462885 | 3_4:-68208486 | None:intergenic |
| GAAAGAAGATGAGAAGGAAC+AGG | 0.467897 | 3_4:-68207052 | None:intergenic |
| TCATCACTTGATCTATCAAT+GGG | 0.468999 | 3_4:+68208524 | Msa0516680:CDS |
| TCCATTGGCACTTCAGGGAC+AGG | 0.476778 | 3_4:+68208776 | Msa0516680:CDS |
| CTAAAATAGCATTCTCAAGT+TGG | 0.478113 | 3_4:+68208612 | Msa0516680:CDS |
| AATAACACTAGTAGTGTTGT+TGG | 0.478175 | 3_4:+68206519 | Msa0516680:CDS |
| CTAACCTTTAAGGGTTGTGT+TGG | 0.481457 | 3_4:-68206793 | None:intergenic |
| GCTCAATCCAGCACAACCTT+GGG | 0.488726 | 3_4:+68208634 | Msa0516680:CDS |
| AGTTCAGAACTGTTATATAG+TGG | 0.490372 | 3_4:-68208308 | None:intergenic |
| TGATAGATCAAGTGATGAAA+GGG | 0.490826 | 3_4:-68208519 | None:intergenic |
| TCAATGAAACTAAAACCTCT+TGG | 0.493104 | 3_4:-68208407 | None:intergenic |
| TCTGCTGCTGTTGATGCTGA+AGG | 0.494288 | 3_4:+68206648 | Msa0516680:CDS |
| GTCCAAATGTTGCATCATCA+AGG | 0.496502 | 3_4:+68208873 | Msa0516680:CDS |
| TCGAATCCATTGGCACTTCA+GGG | 0.500942 | 3_4:+68208771 | Msa0516680:CDS |
| AGAACCATTGTTGGAGGTGG+TGG | 0.506509 | 3_4:-68208477 | None:intergenic |
| GGCTTGGAGTGGATGCTGAA+TGG | 0.510711 | 3_4:+68208161 | Msa0516680:CDS |
| CTGATGGAAGTAACATTGCT+TGG | 0.510713 | 3_4:-68208698 | None:intergenic |
| GAACCTACCCAAGGTTGTGC+TGG | 0.517275 | 3_4:-68208641 | None:intergenic |
| GTGGAAATGAATTCAGATAC+CGG | 0.521350 | 3_4:-68208289 | None:intergenic |
| TGGCGGCTTCAATAGGAATA+GGG | 0.523564 | 3_4:+68206951 | Msa0516680:CDS |
| TCCTGTCCCTGAAGTGCCAA+TGG | 0.523915 | 3_4:-68208777 | None:intergenic |
| TCAGATTGGAGAGTTTGCAT+TGG | 0.524106 | 3_4:-68208380 | None:intergenic |
| GAATTGAATGAAAAGGGGCT+TGG | 0.524945 | 3_4:+68208145 | Msa0516680:intron |
| CACTAGTAGTGTTGTTGGGT+CGG | 0.525074 | 3_4:+68206524 | Msa0516680:CDS |
| GAAGCAGAAATGTTGTGAAA+AGG | 0.532749 | 3_4:-68206771 | None:intergenic |
| GGGATTAAGTAAGAGAGGAA+AGG | 0.533228 | 3_4:-68208348 | None:intergenic |
| GGCCTTAGAACTTCAGCTAG+TGG | 0.534033 | 3_4:-68208677 | None:intergenic |
| TTGATAGATCAAGTGATGAA+AGG | 0.535432 | 3_4:-68208520 | None:intergenic |
| AGAATTTGTTGCATCACTGA+TGG | 0.536310 | 3_4:-68208714 | None:intergenic |
| AATGGAGATCCAATTTCCCT+TGG | 0.538520 | 3_4:+68208179 | Msa0516680:CDS |
| CTCCATTGAGCAATTGTGAA+AGG | 0.540021 | 3_4:-68206980 | None:intergenic |
| GGAATGGTATCATCTCCATC+TGG | 0.544391 | 3_4:+68208797 | Msa0516680:CDS |
| ATTATGATAGGAACTTCCAT+TGG | 0.546307 | 3_4:-68208255 | None:intergenic |
| ACCACCACCACCTCCAACAA+TGG | 0.549376 | 3_4:+68208473 | Msa0516680:CDS |
| ATACATGAAAGAAGATGAGA+AGG | 0.554354 | 3_4:-68207058 | None:intergenic |
| GGTGGTCACAGCAGGTGGAA+TGG | 0.556637 | 3_4:+68206931 | Msa0516680:intron |
| AACAATGGTTCTGCATCAGT+TGG | 0.557664 | 3_4:+68208488 | Msa0516680:CDS |
| TTATTATGCAAAACACCAGA+TGG | 0.559997 | 3_4:-68208812 | None:intergenic |
| AAAGACATGTTGTATGTTGT+GGG | 0.561732 | 3_4:-68206678 | None:intergenic |
| AAAAGACATGTTGTATGTTG+TGG | 0.562174 | 3_4:-68206679 | None:intergenic |
| AACAATACTGATCCAGAGGC+TGG | 0.566845 | 3_4:+68207359 | Msa0516680:CDS |
| TGAGTTTCGCGTTCAAGACA+AGG | 0.567509 | 3_4:+68206473 | Msa0516680:CDS |
| ACAAATCGTGTCGAATCCAT+TGG | 0.573702 | 3_4:+68208761 | Msa0516680:CDS |
| GTTTGTTGTTATGCATCAGA+GGG | 0.575473 | 3_4:-68208223 | None:intergenic |
| ATAACACTAGTAGTGTTGTT+GGG | 0.575929 | 3_4:+68206520 | Msa0516680:CDS |
| AACAAACTTGGAATGACCAA+TGG | 0.577256 | 3_4:+68208239 | Msa0516680:CDS |
| CATGATTATCAAAGAATGAA+CGG | 0.581245 | 3_4:-68206611 | None:intergenic |
| AGTTTGTTGTTATGCATCAG+AGG | 0.584443 | 3_4:-68208224 | None:intergenic |
| TGCAGAACCATTGTTGGAGG+TGG | 0.586637 | 3_4:-68208480 | None:intergenic |
| TCCTGAATTAGAAGCACCAA+GGG | 0.587527 | 3_4:-68208195 | None:intergenic |
| GAGTTTGCATTGGAACAACA+AGG | 0.591725 | 3_4:-68208370 | None:intergenic |
| ATACTGATCCAGAGGCTGGT+AGG | 0.593096 | 3_4:+68207363 | Msa0516680:CDS |
| ACACGATTTGTTGTTGTGAG+AGG | 0.596043 | 3_4:-68208749 | None:intergenic |
| ATCATAATAACACTGAATCC+CGG | 0.598777 | 3_4:+68208270 | Msa0516680:CDS |
| TTGGTGCTTCTAATTCAGGA+TGG | 0.601100 | 3_4:+68208198 | Msa0516680:CDS |
| ACAAGGGGATTAAGTAAGAG+AGG | 0.605379 | 3_4:-68208353 | None:intergenic |
| GTTTGCATTGGAACAACAAG+GGG | 0.608134 | 3_4:-68208368 | None:intergenic |
| CCTTGGGTAGGTTCAACACC+TGG | 0.615728 | 3_4:+68208650 | Msa0516680:CDS |
| TGGATGGTGGTTTCAATCTG+AGG | 0.616315 | 3_4:+68207324 | Msa0516680:CDS |
| GGTAGGTGCAGAAGAACAGA+TGG | 0.619651 | 3_4:+68207380 | Msa0516680:CDS |
| GGTCACAGCAGGTGGAATGG+CGG | 0.620189 | 3_4:+68206934 | Msa0516680:intron |
| TCCAAATGTTGCATCATCAA+GGG | 0.620644 | 3_4:+68208874 | Msa0516680:CDS |
| CTCCAATCTGAGAAACCAAG+AGG | 0.625201 | 3_4:+68208392 | Msa0516680:CDS |
| GAATGAAAAGGGGCTTGGAG+TGG | 0.630089 | 3_4:+68208150 | Msa0516680:intron |
| TGGCACTTCAGGGACAGGAA+TGG | 0.631431 | 3_4:+68208781 | Msa0516680:CDS |
| ACTTCAGCTAGTGGACCACC+AGG | 0.635831 | 3_4:-68208668 | None:intergenic |
| TGGAAATGAATTCAGATACC+GGG | 0.640548 | 3_4:-68208288 | None:intergenic |
| TAGGAACAATACTGATCCAG+AGG | 0.641405 | 3_4:+68207355 | Msa0516680:CDS |
| TGATGCAGAACCATTGTTGG+AGG | 0.644016 | 3_4:-68208483 | None:intergenic |
| CATTGAGCAATTGTGAAAGG+AGG | 0.644246 | 3_4:-68206977 | None:intergenic |
| AATCCAGCACAACCTTGGGT+AGG | 0.661395 | 3_4:+68208638 | Msa0516680:CDS |
| AGTTTGCATTGGAACAACAA+GGG | 0.661506 | 3_4:-68208369 | None:intergenic |
| CCAGGTGTTGAACCTACCCA+AGG | 0.666817 | 3_4:-68208650 | None:intergenic |
| ATCCTGAATTAGAAGCACCA+AGG | 0.673204 | 3_4:-68208196 | None:intergenic |
| TCACTTGATCTATCAATGGG+AGG | 0.680795 | 3_4:+68208527 | Msa0516680:CDS |
| TTGGTCTAATGCAGAGACAG+TGG | 0.682367 | 3_4:+68208433 | Msa0516680:CDS |
| TGGGTAGGTTCAACACCTGG+TGG | 0.687244 | 3_4:+68208653 | Msa0516680:CDS |
| GATTATCAAAGAATGAACGG+TGG | 0.727234 | 3_4:-68206608 | None:intergenic |
| AATGCTATCATTGATAATGG+CGG | 0.749635 | 3_4:+68206729 | Msa0516680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAATATGAAATTAATTA+AGG | - | chr3_4:68207108-68207127 | None:intergenic | 10.0% |
| !! | ATATATAGAAAAATAAGTAG+TGG | + | chr3_4:68206843-68206862 | Msa0516680:intron | 15.0% |
| !!! | AAAAAAAATCAAGCTTTATT+TGG | - | chr3_4:68207994-68208013 | None:intergenic | 15.0% |
| !!! | TAAATAAATGCATTGTTTTA+TGG | + | chr3_4:68208080-68208099 | Msa0516680:intron | 15.0% |
| !! | AAAAAGCAGAAAAAGTTAAT+GGG | - | chr3_4:68207156-68207175 | None:intergenic | 20.0% |
| !! | AAAAAAGCAGAAAAAGTTAA+TGG | - | chr3_4:68207157-68207176 | None:intergenic | 20.0% |
| !!! | TTTCATGTTTTGTTTTGATT+TGG | + | chr3_4:68207958-68207977 | Msa0516680:intron | 20.0% |
| !!! | TTTCTAGTTTGTTATTGATT+TGG | + | chr3_4:68208121-68208140 | Msa0516680:intron | 20.0% |
| !! | ATGATTAAACTTATTGAGTA+AGG | - | chr3_4:68208915-68208934 | None:intergenic | 20.0% |
| !!! | TTGTTGTTGGTTTTTTTTGT+AGG | - | chr3_4:68206501-68206520 | None:intergenic | 25.0% |
| ! | CATGATTATCAAAGAATGAA+CGG | - | chr3_4:68206614-68206633 | None:intergenic | 25.0% |
| ! | GTGAAAAGGTTGAAAATTTA+AGG | - | chr3_4:68206760-68206779 | None:intergenic | 25.0% |
| ! | AAACACAAACTAACCTTTAA+GGG | - | chr3_4:68206805-68206824 | None:intergenic | 25.0% |
| ! | TAAACACAAACTAACCTTTA+AGG | - | chr3_4:68206806-68206825 | None:intergenic | 25.0% |
| ! | TATGATTTACAAGTACTTGA+TGG | + | chr3_4:68207021-68207040 | Msa0516680:CDS | 25.0% |
| !!! | TACAAACTTTTGACTCAAAA+TGG | - | chr3_4:68207184-68207203 | None:intergenic | 25.0% |
| ! | AAGGTAAATAGAATGAAAAG+TGG | - | chr3_4:68207213-68207232 | None:intergenic | 25.0% |
| ! | ATAGTCATCATCAAATCAAA+AGG | + | chr3_4:68207528-68207547 | Msa0516680:intron | 25.0% |
| ! | TAGTCATCATCAAATCAAAA+GGG | + | chr3_4:68207529-68207548 | Msa0516680:intron | 25.0% |
| !! | TATTTTCTTGTAGTTGGATT+AGG | - | chr3_4:68207611-68207630 | None:intergenic | 25.0% |
| ! | AATCCAACTACAAGAAAATA+TGG | + | chr3_4:68207611-68207630 | Msa0516680:intron | 25.0% |
| ! | TATGCAAAGAAAATGAAGAT+TGG | - | chr3_4:68207682-68207701 | None:intergenic | 25.0% |
| ! | ATATTGAGTTTGACTAAATC+AGG | + | chr3_4:68207790-68207809 | Msa0516680:intron | 25.0% |
| !!! | TGTCTTTGTTTGTTTTGATT+TGG | + | chr3_4:68207920-68207939 | Msa0516680:intron | 25.0% |
| ! | ACAAAACATGAAAGTGAATA+AGG | - | chr3_4:68207951-68207970 | None:intergenic | 25.0% |
| ! | TTTAAGAGTGAATTTCATAG+AGG | - | chr3_4:68208020-68208039 | None:intergenic | 25.0% |
| ! | TTTAAGAGTGAATTTCATAG+AGG | - | chr3_4:68208020-68208039 | None:intergenic | 25.0% |
| !! | ATTTGGTGAATTGAATGAAA+AGG | + | chr3_4:68208138-68208157 | Msa0516680:intron | 25.0% |
| ! | TTTGGTGAATTGAATGAAAA+GGG | + | chr3_4:68208139-68208158 | Msa0516680:intron | 25.0% |
| ! | ACTACTAGTGTTATTGTTGT+TGG | - | chr3_4:68206514-68206533 | None:intergenic | 30.0% |
| AATAACACTAGTAGTGTTGT+TGG | + | chr3_4:68206519-68206538 | Msa0516680:CDS | 30.0% | |
| ! | ATAACACTAGTAGTGTTGTT+GGG | + | chr3_4:68206520-68206539 | Msa0516680:CDS | 30.0% |
| AAAGACATGTTGTATGTTGT+GGG | - | chr3_4:68206681-68206700 | None:intergenic | 30.0% | |
| AAAAGACATGTTGTATGTTG+TGG | - | chr3_4:68206682-68206701 | None:intergenic | 30.0% | |
| ! | ACAACATACAACATGTCTTT+TGG | + | chr3_4:68206681-68206700 | Msa0516680:CDS | 30.0% |
| ! | CAACATACAACATGTCTTTT+GGG | + | chr3_4:68206682-68206701 | Msa0516680:CDS | 30.0% |
| ! | AACATACAACATGTCTTTTG+GGG | + | chr3_4:68206683-68206702 | Msa0516680:CDS | 30.0% |
| GCTAATGCTATCATTGATAA+TGG | + | chr3_4:68206726-68206745 | Msa0516680:CDS | 30.0% | |
| !! | AATGCTATCATTGATAATGG+CGG | + | chr3_4:68206729-68206748 | Msa0516680:CDS | 30.0% |
| ATACATGAAAGAAGATGAGA+AGG | - | chr3_4:68207061-68207080 | None:intergenic | 30.0% | |
| TTAAGGAAGAAGAGAGAAAA+GGG | - | chr3_4:68207091-68207110 | None:intergenic | 30.0% | |
| ATTAAGGAAGAAGAGAGAAA+AGG | - | chr3_4:68207092-68207111 | None:intergenic | 30.0% | |
| !! | CACATTGATTCAATGACAAA+AGG | - | chr3_4:68207232-68207251 | None:intergenic | 30.0% |
| TTTGTCATTGAATCAATGTG+TGG | + | chr3_4:68207232-68207251 | Msa0516680:intron | 30.0% | |
| AAAGCAACACATGATGAAAA+AGG | - | chr3_4:68207258-68207277 | None:intergenic | 30.0% | |
| GAAGAACAGATGGTAAAAAA+TGG | + | chr3_4:68207390-68207409 | Msa0516680:CDS | 30.0% | |
| !! | CTTTCACAGTACTTGTTATT+AGG | - | chr3_4:68207437-68207456 | None:intergenic | 30.0% |
| ! | GATCCATATTTTCTTGTAGT+TGG | - | chr3_4:68207617-68207636 | None:intergenic | 30.0% |
| GAAAATGAAGATTGGAGATA+AGG | - | chr3_4:68207674-68207693 | None:intergenic | 30.0% | |
| ATACAGATATAAACTCACCT+TGG | - | chr3_4:68207734-68207753 | None:intergenic | 30.0% | |
| ! | TGATTTTGTTGAATCCCTTA+AGG | + | chr3_4:68207822-68207841 | Msa0516680:intron | 30.0% |
| ACAAAGACATAGTACATGTT+TGG | - | chr3_4:68207909-68207928 | None:intergenic | 30.0% | |
| !! | GTTTTATGGTGTTAGTGTTA+TGG | + | chr3_4:68208094-68208113 | Msa0516680:intron | 30.0% |
| TTGGTGAATTGAATGAAAAG+GGG | + | chr3_4:68208140-68208159 | Msa0516680:intron | 30.0% | |
| ATTATGATAGGAACTTCCAT+TGG | - | chr3_4:68208258-68208277 | None:intergenic | 30.0% | |
| ! | GGATTCAGTGTTATTATGAT+AGG | - | chr3_4:68208270-68208289 | None:intergenic | 30.0% |
| ATCATAATAACACTGAATCC+CGG | + | chr3_4:68208270-68208289 | Msa0516680:CDS | 30.0% | |
| AGTTCAGAACTGTTATATAG+TGG | - | chr3_4:68208311-68208330 | None:intergenic | 30.0% | |
| TCAATGAAACTAAAACCTCT+TGG | - | chr3_4:68208410-68208429 | None:intergenic | 30.0% | |
| !!! | GTTTTAGTTTCATTGATGCT+TGG | + | chr3_4:68208414-68208433 | Msa0516680:CDS | 30.0% |
| TGATAGATCAAGTGATGAAA+GGG | - | chr3_4:68208522-68208541 | None:intergenic | 30.0% | |
| TTGATAGATCAAGTGATGAA+AGG | - | chr3_4:68208523-68208542 | None:intergenic | 30.0% | |
| TTCATCACTTGATCTATCAA+TGG | + | chr3_4:68208523-68208542 | Msa0516680:CDS | 30.0% | |
| TCATCACTTGATCTATCAAT+GGG | + | chr3_4:68208524-68208543 | Msa0516680:CDS | 30.0% | |
| CTAAAATAGCATTCTCAAGT+TGG | + | chr3_4:68208612-68208631 | Msa0516680:CDS | 30.0% | |
| TTATTATGCAAAACACCAGA+TGG | - | chr3_4:68208815-68208834 | None:intergenic | 30.0% | |
| GATTATCAAAGAATGAACGG+TGG | - | chr3_4:68206611-68206630 | None:intergenic | 35.0% | |
| ! | ACATACAACATGTCTTTTGG+GGG | + | chr3_4:68206684-68206703 | Msa0516680:CDS | 35.0% |
| GAAGCAGAAATGTTGTGAAA+AGG | - | chr3_4:68206774-68206793 | None:intergenic | 35.0% | |
| TACTTGTGTTTGTGTGTTTG+TGG | + | chr3_4:68206910-68206929 | Msa0516680:intron | 35.0% | |
| !!! | TATCCTTGTTTTTGAAGCAG+TGG | + | chr3_4:68207304-68207323 | Msa0516680:intron | 35.0% |
| ! | TCAATCTGAGGCTATCAAAT+AGG | + | chr3_4:68207336-68207355 | Msa0516680:CDS | 35.0% |
| TGTGAAAGACATATGCATAG+AGG | + | chr3_4:68207449-68207468 | Msa0516680:intron | 35.0% | |
| TTATTTGTGTGAAGTTCCAC+AGG | - | chr3_4:68207494-68207513 | None:intergenic | 35.0% | |
| ! | TTTCTTGTAGTTGGATTAGG+AGG | - | chr3_4:68207608-68207627 | None:intergenic | 35.0% |
| AGATTGGAGATAAGGATGAA+GGG | - | chr3_4:68207666-68207685 | None:intergenic | 35.0% | |
| AAGATTGGAGATAAGGATGA+AGG | - | chr3_4:68207667-68207686 | None:intergenic | 35.0% | |
| TTTGCATAATAGCAGCTTTG+AGG | + | chr3_4:68207694-68207713 | Msa0516680:intron | 35.0% | |
| GGGATTCAACAAAATCACAA+TGG | - | chr3_4:68207819-68207838 | None:intergenic | 35.0% | |
| TTAGAAGATCCAAGCCTTAA+GGG | - | chr3_4:68207839-68207858 | None:intergenic | 35.0% | |
| !! | GTTTGTTGTTATGCATCAGA+GGG | - | chr3_4:68208226-68208245 | None:intergenic | 35.0% |
| !! | AGTTTGTTGTTATGCATCAG+AGG | - | chr3_4:68208227-68208246 | None:intergenic | 35.0% |
| CTGATGCATAACAACAAACT+TGG | + | chr3_4:68208227-68208246 | Msa0516680:CDS | 35.0% | |
| AACAAACTTGGAATGACCAA+TGG | + | chr3_4:68208239-68208258 | Msa0516680:CDS | 35.0% | |
| TGGAAATGAATTCAGATACC+GGG | - | chr3_4:68208291-68208310 | None:intergenic | 35.0% | |
| GTGGAAATGAATTCAGATAC+CGG | - | chr3_4:68208292-68208311 | None:intergenic | 35.0% | |
| GGATTAAGTAAGAGAGGAAA+GGG | - | chr3_4:68208350-68208369 | None:intergenic | 35.0% | |
| AGTTTGCATTGGAACAACAA+GGG | - | chr3_4:68208372-68208391 | None:intergenic | 35.0% | |
| !! | AGAATTTGTTGCATCACTGA+TGG | - | chr3_4:68208717-68208736 | None:intergenic | 35.0% |
| ! | GCTTCATTTTCTGATAGTAG+TGG | + | chr3_4:68208842-68208861 | Msa0516680:CDS | 35.0% |
| TCCAAATGTTGCATCATCAA+GGG | + | chr3_4:68208874-68208893 | Msa0516680:CDS | 35.0% | |
| ! | CTAACCTTTAAGGGTTGTGT+TGG | - | chr3_4:68206796-68206815 | None:intergenic | 40.0% |
| TTGTGTTTGTGTGTTTGTGG+TGG | + | chr3_4:68206913-68206932 | Msa0516680:intron | 40.0% | |
| CATTGAGCAATTGTGAAAGG+AGG | - | chr3_4:68206980-68206999 | None:intergenic | 40.0% | |
| CTCCTTTCACAATTGCTCAA+TGG | + | chr3_4:68206978-68206997 | Msa0516680:CDS | 40.0% | |
| CTCCATTGAGCAATTGTGAA+AGG | - | chr3_4:68206983-68207002 | None:intergenic | 40.0% | |
| GAAAGAAGATGAGAAGGAAC+AGG | - | chr3_4:68207055-68207074 | None:intergenic | 40.0% | |
| CATCCACTGCTTCAAAAACA+AGG | - | chr3_4:68207310-68207329 | None:intergenic | 40.0% | |
| !!! | CTTGTTTTTGAAGCAGTGGA+TGG | + | chr3_4:68207308-68207327 | Msa0516680:intron | 40.0% |
| TAGGAACAATACTGATCCAG+AGG | + | chr3_4:68207355-68207374 | Msa0516680:CDS | 40.0% | |
| ! | TTCTCTGCCTGATTTTACTG+TGG | + | chr3_4:68207577-68207596 | Msa0516680:intron | 40.0% |
| GGAATAGCCACAGTAAAATC+AGG | - | chr3_4:68207587-68207606 | None:intergenic | 40.0% | |
| GATTGGAGATAAGGATGAAG+GGG | - | chr3_4:68207665-68207684 | None:intergenic | 40.0% | |
| AGGCTTCAAATAAGCAACCA+AGG | + | chr3_4:68207714-68207733 | Msa0516680:intron | 40.0% | |
| TTGTTGAATCCCTTAAGGCT+TGG | + | chr3_4:68207827-68207846 | Msa0516680:intron | 40.0% | |
| CTTAGAAGATCCAAGCCTTA+AGG | - | chr3_4:68207840-68207859 | None:intergenic | 40.0% | |
| GAATTGAATGAAAAGGGGCT+TGG | + | chr3_4:68208145-68208164 | Msa0516680:intron | 40.0% | |
| AATGGAGATCCAATTTCCCT+TGG | + | chr3_4:68208179-68208198 | Msa0516680:CDS | 40.0% | |
| !! | TTAGAAGCACCAAGGGAAAT+TGG | - | chr3_4:68208191-68208210 | None:intergenic | 40.0% |
| !! | TCCTGAATTAGAAGCACCAA+GGG | - | chr3_4:68208198-68208217 | None:intergenic | 40.0% |
| !! | ATCCTGAATTAGAAGCACCA+AGG | - | chr3_4:68208199-68208218 | None:intergenic | 40.0% |
| ! | TTGGTGCTTCTAATTCAGGA+TGG | + | chr3_4:68208198-68208217 | Msa0516680:CDS | 40.0% |
| GGGATTAAGTAAGAGAGGAA+AGG | - | chr3_4:68208351-68208370 | None:intergenic | 40.0% | |
| ACAAGGGGATTAAGTAAGAG+AGG | - | chr3_4:68208356-68208375 | None:intergenic | 40.0% | |
| GTTTGCATTGGAACAACAAG+GGG | - | chr3_4:68208371-68208390 | None:intergenic | 40.0% | |
| GAGTTTGCATTGGAACAACA+AGG | - | chr3_4:68208373-68208392 | None:intergenic | 40.0% | |
| TCAGATTGGAGAGTTTGCAT+TGG | - | chr3_4:68208383-68208402 | None:intergenic | 40.0% | |
| AACCTCTTGGTTTCTCAGAT+TGG | - | chr3_4:68208397-68208416 | None:intergenic | 40.0% | |
| AACTGATGCAGAACCATTGT+TGG | - | chr3_4:68208489-68208508 | None:intergenic | 40.0% | |
| ! | AACAATGGTTCTGCATCAGT+TGG | + | chr3_4:68208488-68208507 | Msa0516680:CDS | 40.0% |
| TCACTTGATCTATCAATGGG+AGG | + | chr3_4:68208527-68208546 | Msa0516680:CDS | 40.0% | |
| CTGATGGAAGTAACATTGCT+TGG | - | chr3_4:68208701-68208720 | None:intergenic | 40.0% | |
| !! | ACACGATTTGTTGTTGTGAG+AGG | - | chr3_4:68208752-68208771 | None:intergenic | 40.0% |
| ACAAATCGTGTCGAATCCAT+TGG | + | chr3_4:68208761-68208780 | Msa0516680:CDS | 40.0% | |
| GTCCAAATGTTGCATCATCA+AGG | + | chr3_4:68208873-68208892 | Msa0516680:CDS | 40.0% | |
| TGAGTTTCGCGTTCAAGACA+AGG | + | chr3_4:68206473-68206492 | Msa0516680:CDS | 45.0% | |
| ! | CACTAGTAGTGTTGTTGGGT+CGG | + | chr3_4:68206524-68206543 | Msa0516680:CDS | 45.0% |
| GCTGTTGATGCTGAAGGTTA+TGG | + | chr3_4:68206654-68206673 | Msa0516680:CDS | 45.0% | |
| GCTTCCAACACAACCCTTAA+AGG | + | chr3_4:68206789-68206808 | Msa0516680:CDS | 45.0% | |
| ATGGCGGCTTCAATAGGAAT+AGG | + | chr3_4:68206950-68206969 | Msa0516680:CDS | 45.0% | |
| TGGCGGCTTCAATAGGAATA+GGG | + | chr3_4:68206951-68206970 | Msa0516680:CDS | 45.0% | |
| !!! | GTTTTTGAAGCAGTGGATGG+TGG | + | chr3_4:68207311-68207330 | Msa0516680:intron | 45.0% |
| ! | TGGATGGTGGTTTCAATCTG+AGG | + | chr3_4:68207324-68207343 | Msa0516680:CDS | 45.0% |
| AACAATACTGATCCAGAGGC+TGG | + | chr3_4:68207359-68207378 | Msa0516680:CDS | 45.0% | |
| TTCCACAGGCTTTCTTGAAC+GGG | - | chr3_4:68207480-68207499 | None:intergenic | 45.0% | |
| GTTCCACAGGCTTTCTTGAA+CGG | - | chr3_4:68207481-68207500 | None:intergenic | 45.0% | |
| !! | TCCCTTGGTGCTTCTAATTC+AGG | + | chr3_4:68208194-68208213 | Msa0516680:CDS | 45.0% |
| CTCCAATCTGAGAAACCAAG+AGG | + | chr3_4:68208392-68208411 | Msa0516680:CDS | 45.0% | |
| TTGGTCTAATGCAGAGACAG+TGG | + | chr3_4:68208433-68208452 | Msa0516680:CDS | 45.0% | |
| TGATGCAGAACCATTGTTGG+AGG | - | chr3_4:68208486-68208505 | None:intergenic | 45.0% | |
| GTCCACTAGCTGAAGTTCTA+AGG | + | chr3_4:68208675-68208694 | Msa0516680:CDS | 45.0% | |
| TCGAATCCATTGGCACTTCA+GGG | + | chr3_4:68208771-68208790 | Msa0516680:CDS | 45.0% | |
| GGAATGGTATCATCTCCATC+TGG | + | chr3_4:68208797-68208816 | Msa0516680:CDS | 45.0% | |
| !! | GCCCTTGATGATGCAACATT+TGG | - | chr3_4:68208878-68208897 | None:intergenic | 45.0% |
| TCTGCTGCTGTTGATGCTGA+AGG | + | chr3_4:68206648-68206667 | Msa0516680:CDS | 50.0% | |
| ATACTGATCCAGAGGCTGGT+AGG | + | chr3_4:68207363-68207382 | Msa0516680:CDS | 50.0% | |
| GGTAGGTGCAGAAGAACAGA+TGG | + | chr3_4:68207380-68207399 | Msa0516680:CDS | 50.0% | |
| TCCACAGGCTTTCTTGAACG+GGG | - | chr3_4:68207479-68207498 | None:intergenic | 50.0% | |
| GAGATAAGGATGAAGGGGAG+TGG | - | chr3_4:68207660-68207679 | None:intergenic | 50.0% | |
| GAATGAAAAGGGGCTTGGAG+TGG | + | chr3_4:68208150-68208169 | Msa0516680:intron | 50.0% | |
| AGAACCATTGTTGGAGGTGG+TGG | - | chr3_4:68208480-68208499 | None:intergenic | 50.0% | |
| TGCAGAACCATTGTTGGAGG+TGG | - | chr3_4:68208483-68208502 | None:intergenic | 50.0% | |
| GCTCAATCCAGCACAACCTT+GGG | + | chr3_4:68208634-68208653 | Msa0516680:CDS | 50.0% | |
| AATCCAGCACAACCTTGGGT+AGG | + | chr3_4:68208638-68208657 | Msa0516680:CDS | 50.0% | |
| GGCCTTAGAACTTCAGCTAG+TGG | - | chr3_4:68208680-68208699 | None:intergenic | 50.0% | |
| GTCGAATCCATTGGCACTTC+AGG | + | chr3_4:68208770-68208789 | Msa0516680:CDS | 50.0% | |
| !! | GGGTCGGTGCAGAGTTTTGA+AGG | + | chr3_4:68206540-68206559 | Msa0516680:CDS | 55.0% |
| GGGGGTGATTCTTCTGCTCT+AGG | + | chr3_4:68206702-68206721 | Msa0516680:CDS | 55.0% | |
| GTGTTTGTGGTGGTCACAGC+AGG | + | chr3_4:68206923-68206942 | Msa0516680:intron | 55.0% | |
| TTTGTGGTGGTCACAGCAGG+TGG | + | chr3_4:68206926-68206945 | Msa0516680:intron | 55.0% | |
| GGTGGAATGGCGGCTTCAAT+AGG | + | chr3_4:68206944-68206963 | Msa0516680:CDS | 55.0% | |
| TCCCCGTTCAAGAAAGCCTG+TGG | + | chr3_4:68207475-68207494 | Msa0516680:intron | 55.0% | |
| GGCTTGGAGTGGATGCTGAA+TGG | + | chr3_4:68208161-68208180 | Msa0516680:CDS | 55.0% | |
| !! | ATTGTTGGAGGTGGTGGTGG+TGG | - | chr3_4:68208474-68208493 | None:intergenic | 55.0% |
| ACCACCACCACCTCCAACAA+TGG | + | chr3_4:68208473-68208492 | Msa0516680:CDS | 55.0% | |
| ! | ACCATTGTTGGAGGTGGTGG+TGG | - | chr3_4:68208477-68208496 | None:intergenic | 55.0% |
| GGCTCAATCCAGCACAACCT+TGG | + | chr3_4:68208633-68208652 | Msa0516680:CDS | 55.0% | |
| GAACCTACCCAAGGTTGTGC+TGG | - | chr3_4:68208644-68208663 | None:intergenic | 55.0% | |
| !! | CCAGGTGTTGAACCTACCCA+AGG | - | chr3_4:68208653-68208672 | None:intergenic | 55.0% |
| CCTTGGGTAGGTTCAACACC+TGG | + | chr3_4:68208650-68208669 | Msa0516680:CDS | 55.0% | |
| TGGGTAGGTTCAACACCTGG+TGG | + | chr3_4:68208653-68208672 | Msa0516680:CDS | 55.0% | |
| ! | ACTTCAGCTAGTGGACCACC+AGG | - | chr3_4:68208671-68208690 | None:intergenic | 55.0% |
| TCCATTGGCACTTCAGGGAC+AGG | + | chr3_4:68208776-68208795 | Msa0516680:CDS | 55.0% | |
| ! | TCCTGTCCCTGAAGTGCCAA+TGG | - | chr3_4:68208780-68208799 | None:intergenic | 55.0% |
| TGGCACTTCAGGGACAGGAA+TGG | + | chr3_4:68208781-68208800 | Msa0516680:CDS | 55.0% | |
| GGTGGTCACAGCAGGTGGAA+TGG | + | chr3_4:68206931-68206950 | Msa0516680:intron | 60.0% | |
| GGTCACAGCAGGTGGAATGG+CGG | + | chr3_4:68206934-68206953 | Msa0516680:intron | 60.0% | |
| CTTCTGCACCTACCAGCCTC+TGG | - | chr3_4:68207374-68207393 | None:intergenic | 60.0% | |
| !! | GGAGGTGGTGGTGGTGGTGT+TGG | - | chr3_4:68208468-68208487 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 68206468 | 68208952 | 68206468 | ID=Msa0516680;Name=Msa0516680 |
| chr3_4 | mRNA | 68206468 | 68208952 | 68206468 | ID=Msa0516680-mRNA-1;Parent=Msa0516680;Name=Msa0516680-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|4|0|464 |
| chr3_4 | exon | 68206468 | 68206810 | 68206468 | ID=Msa0516680-mRNA-1:exon:17942;Parent=Msa0516680-mRNA-1 |
| chr3_4 | exon | 68206942 | 68207076 | 68206942 | ID=Msa0516680-mRNA-1:exon:17943;Parent=Msa0516680-mRNA-1 |
| chr3_4 | exon | 68207321 | 68207444 | 68207321 | ID=Msa0516680-mRNA-1:exon:17944;Parent=Msa0516680-mRNA-1 |
| chr3_4 | exon | 68208160 | 68208952 | 68208160 | ID=Msa0516680-mRNA-1:exon:17945;Parent=Msa0516680-mRNA-1 |
| chr3_4 | CDS | 68206468 | 68206810 | 68206468 | ID=Msa0516680-mRNA-1:cds;Parent=Msa0516680-mRNA-1 |
| chr3_4 | CDS | 68206942 | 68207076 | 68206942 | ID=Msa0516680-mRNA-1:cds;Parent=Msa0516680-mRNA-1 |
| chr3_4 | CDS | 68207321 | 68207444 | 68207321 | ID=Msa0516680-mRNA-1:cds;Parent=Msa0516680-mRNA-1 |
| chr3_4 | CDS | 68208160 | 68208952 | 68208160 | ID=Msa0516680-mRNA-1:cds;Parent=Msa0516680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
