AlfalfaGEDB | Msa0518000

M. sativa cultivar zhongmu-4 / Msa0518000

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009292 GO:0009294 GO:0009507 GO:0009536 GO:0009555 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0046976 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051704 GO:0051726 GO:0060255 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:2000112
PFAM: PF00628.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518000	XP_003602576.2	57.522	113	38	2	3	105	8	120	2.08e-28	127
Msa0518000	XP_003602576.2	94.832	387	13	3	114	495	6	390	0.0	748

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518000	sp\|B9RU15\|ATXR5_RICCO	62.169	378	137	4	119	495	2	374	1.44e-164	473
Msa0518000	sp\|B9RU15\|ATXR5_RICCO	70.149	67	20	0	42	108	43	109	3.56e-27	115

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518000	G7JBG7	57.522	113	38	2	3	105	8	120	9.94e-29	127
Msa0518000	G7JBG7	94.832	387	13	3	114	495	6	390	0.0	748

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TFs/TRs:

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Gene ID	Type	Classification
Msa0518000	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518000	MtrunA17_Chr3g0129881	94.832	387	13	3	114	495	6	390	0.0	748
Msa0518000	MtrunA17_Chr3g0129881	57.522	113	38	2	3	105	8	120	1.91e-32	127
Msa0518000	MtrunA17_Chr1g0146731	60.938	320	121	2	177	495	26	342	3.29e-136	397
Msa0518000	MtrunA17_Chr1g0146731	45.312	64	35	0	42	105	10	73	7.01e-14	72.8
Msa0518000	MtrunA17_Chr1g0146761	52.484	322	116	4	177	495	73	360	6.98e-112	335
Msa0518000	MtrunA17_Chr1g0146761	31.633	98	63	1	8	105	23	116	6.20e-11	63.9
Msa0518000	MtrunA17_Chr3g0129871	93.421	76	5	0	39	114	1	76	1.76e-46	156
Msa0518000	MtrunA17_Chr3g0129871	77.419	62	13	1	163	224	7	67	8.20e-29	108
Msa0518000	MtrunA17_Chr1g0146751	56.250	128	56	0	338	465	69	196	4.59e-43	151
Msa0518000	MtrunA17_Chr1g0146741	49.367	158	55	2	273	415	30	177	7.63e-37	134

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518000	AT5G09790.2	65.109	321	109	2	175	495	62	379	9.62e-155	446
Msa0518000	AT5G09790.2	52.083	96	36	3	17	105	19	111	2.49e-21	96.3
Msa0518000	AT5G09790.1	64.798	321	109	2	175	495	62	378	1.24e-153	442
Msa0518000	AT5G09790.1	52.083	96	36	3	17	105	19	111	2.50e-21	96.3
Msa0518000	AT5G24330.1	60.377	318	123	2	179	495	34	349	7.18e-133	389
Msa0518000	AT5G24330.1	69.565	46	14	0	60	105	34	79	8.45e-17	82.0

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Find 152 sgRNAs with CRISPR-Local

Find 482 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACAACGAGTTGCCCA+CGG	0.685626	3_4:-69785350	None:intergenic
AAAATTGGTCCTAATTCTAT+AGG	0.300279	3_4:-69785239	None:intergenic
AACAATCGTGCTTCTTCTCA+GGG	0.545517	3_4:+69782111	Msa0518000:CDS
AACATTGCTCGCTTCATCAG+TGG	0.600548	3_4:+69784724	Msa0518000:CDS
AAGAAAATTCTCCATTTCTT+CGG	0.317251	3_4:+69782060	Msa0518000:CDS
AAGTTGGTTAGCTTACGAGG+GGG	0.753964	3_4:-69776881	None:intergenic
AATAAGCTGACGTACTTTCC+AGG	0.362677	3_4:+69784152	Msa0518000:CDS
AATTACTAAGCCACATAATT+AGG	0.308654	3_4:-69785388	None:intergenic
AATTTATATGCAGGGAAGGC+AGG	0.471087	3_4:+69785038	Msa0518000:intron
AATTTCTTAAAGTGTTACCG+TGG	0.577434	3_4:+69785333	Msa0518000:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTACTTAAACATACATGCAT+AGG	-	chr3_4:69777442-69777461	None:intergenic	30.0%
ATTGGAAATTGAGAAAATGG+TGG	+	chr3_4:69778039-69778058	Msa0518000:intron	30.0%
GAAACTACAGAGAGAAAATA+CGG	-	chr3_4:69778215-69778234	None:intergenic	30.0%
GAATATGCTAGAAAATAACG+AGG	+	chr3_4:69778262-69778281	Msa0518000:intron	30.0%
ACCTTCATTTGTTTGAATCA+AGG	+	chr3_4:69778298-69778317	Msa0518000:intron	30.0%
CCTTCATTTGTTTGAATCAA+GGG	+	chr3_4:69778299-69778318	Msa0518000:intron	30.0%
TTAACTACGAATCACACTAA+AGG	-	chr3_4:69778496-69778515	None:intergenic	30.0%
ATTGAAAGTTGAAAAGCAAG+TGG	+	chr3_4:69778693-69778712	Msa0518000:intron	30.0%
AACTATCTCATTAGCATATG+TGG	-	chr3_4:69778735-69778754	None:intergenic	30.0%
ATGAGATAGTTGTTCAGAAA+TGG	+	chr3_4:69778744-69778763	Msa0518000:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	69776838	69785548	69776838	ID=Msa0518000;Name=Msa0518000
chr3_4	mRNA	69776838	69785548	69776838	ID=Msa0518000-mRNA-1;Parent=Msa0518000;Name=Msa0518000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=25\|0.62\|0.55\|1\|0.62\|0.55\|9\|338\|495
chr3_4	exon	69776838	69776972	69776838	ID=Msa0518000-mRNA-1:exon:18642;Parent=Msa0518000-mRNA-1
chr3_4	exon	69776979	69777208	69776979	ID=Msa0518000-mRNA-1:exon:18643;Parent=Msa0518000-mRNA-1
chr3_4	exon	69781564	69781709	69781564	ID=Msa0518000-mRNA-1:exon:18644;Parent=Msa0518000-mRNA-1
chr3_4	exon	69781725	69781938	69781725	ID=Msa0518000-mRNA-1:exon:18645;Parent=Msa0518000-mRNA-1
chr3_4	exon	69782049	69782132	69782049	ID=Msa0518000-mRNA-1:exon:18646;Parent=Msa0518000-mRNA-1
chr3_4	exon	69783997	69784226	69783997	ID=Msa0518000-mRNA-1:exon:18647;Parent=Msa0518000-mRNA-1
chr3_4	exon	69784358	69784458	69784358	ID=Msa0518000-mRNA-1:exon:18648;Parent=Msa0518000-mRNA-1
chr3_4	exon	69784552	69784764	69784552	ID=Msa0518000-mRNA-1:exon:18649;Parent=Msa0518000-mRNA-1
chr3_4	exon	69785051	69785548	69785051	ID=Msa0518000-mRNA-1:exon:18650;Parent=Msa0518000-mRNA-1
chr3_4	five_prime_UTR	69776838	69776862	69776838	ID=Msa0518000-mRNA-1:five_prime_utr;Parent=Msa0518000-mRNA-1
chr3_4	CDS	69776863	69776972	69776863	ID=Msa0518000-mRNA-1:cds;Parent=Msa0518000-mRNA-1
chr3_4	CDS	69776979	69777208	69776979	ID=Msa0518000-mRNA-1:cds;Parent=Msa0518000-mRNA-1
chr3_4	CDS	69781564	69781709	69781564	ID=Msa0518000-mRNA-1:cds;Parent=Msa0518000-mRNA-1
chr3_4	CDS	69781725	69781938	69781725	ID=Msa0518000-mRNA-1:cds;Parent=Msa0518000-mRNA-1
chr3_4	CDS	69782049	69782132	69782049	ID=Msa0518000-mRNA-1:cds;Parent=Msa0518000-mRNA-1
chr3_4	CDS	69783997	69784226	69783997	ID=Msa0518000-mRNA-1:cds;Parent=Msa0518000-mRNA-1
chr3_4	CDS	69784358	69784458	69784358	ID=Msa0518000-mRNA-1:cds;Parent=Msa0518000-mRNA-1
chr3_4	CDS	69784552	69784764	69784552	ID=Msa0518000-mRNA-1:cds;Parent=Msa0518000-mRNA-1
chr3_4	CDS	69785051	69785210	69785051	ID=Msa0518000-mRNA-1:cds;Parent=Msa0518000-mRNA-1
chr3_4	three_prime_UTR	69785211	69785548	69785211	ID=Msa0518000-mRNA-1:three_prime_utr;Parent=Msa0518000-mRNA-1

Gene Sequence

>Msa0518000

ATGTATTCCTCGCCACCTCCCCCTCGTAAGCTAACCAACTTCACCAGCCGCACACATGCACCATGCCACCGAAAGAAGAAGCCAACAGACTCGTCATCGCGGGTGACGAAGACGATGACTAATATAATGGCGAGGGCTAAATATGCAGTGGTTGAGAAGGAGGATTACAGTGACTGCATGTGTGAGCGATGTGGATCTGGTGAACAACCTGAGGAGCTTTTGTTGTGTGACAAATGCGACAAAGGTTTTCATATGAAGTGTCTGAGACCGGTTCTGGCTAGAGTTCCTATTGGTTCATGGATTTGCCCCAAGTGTTGTTCTGAGCTGGAGAGAGTGAAAACTCCGGCGTCTCCATCGCCGTCTTCCATCAAGCTATCAAGCTTAATCCGCCGCACCCATGCACCTCACAAAATTCAAAAGAAGCTGTCATACTCCTCCTCTTCCTCCACCTTCGAGGAGGAGGAGGGGAATAAGTTACTATCGCTTAGGGCTGAGTACACGGTGGCTGAGGAGGAGGAGGATTACGGTGACCTCCTGTGTGAGCAATGTGGGTCCGGTGAACAACCGGAGGAGCTGCTTTTATGTGACAAATGTGACAATGGTTTTCATATGAAATGTGTCAGACCAATTGTTGTTCGAGTTCCGATTGGTCCGTGGATTTGCCCCAAGTGTTCTGATGTCAAGGTCAAGAAACTCAAAAAGCTTTCTCAGAAGAAAATTCTCCATTTCTTCGGGCTTCGTAGGGATTCTCTTGATTCCGGGAACAATCGTGCTTCTTCTCAGGATGCTATGAAGCGTCGGAGACGTCCAAGACCTCTGGTGGTACAGAAGAAAAGGAGAAGGCTTTTACCATTTGTTCCTACAGAAGATCCTGATAGGAGGCTGAAGCAAATGGCTTCCCTTGCTACTGCTTTAACAGCATTGGATATAGAGTTCAGTAATAAGCTGACGTACTTTCCAGGAATGGCTCCTAGATCTGCTAATCGATCCATTTTAGAGAACGGTGGCATGCAGGCCCTTACTAAGGAAGATACAAAGACCTTAAAACACTGCATAGCTATGACTAAACGAGGCCAATTCCCTCCCTTAATGGTCGTTTATGATTCATGCCAAGGCTATACTGTGGAGGCTGATAGCCCAATCAAAGATATGACATTTATTGCTGAATACACTGGCGATGTTGATTATATAAAGAAGCGAGAATCTGATGATTGTGACAGTATGATGACACTGATTATTGCAGCAAAAGCTGCTGACAGTCTTGTTATCTGTGCTGATAAACGTGGAAACATTGCTCGCTTCATCAGTGGCATCAACAATCATACTCAGGAAGGCAGGAAGAAGCAGAACTGTAAATGTGTGAGATATGATGTTAATGGTGAAAGCCGGGTCTTATTGGTTGCTACTCGAGATATTTCCAAGGGGGAGAGGCTTTATTATGACTATAATGGTTATGTGCATGAATACCCAACTCATCATTTTGTCTGA

Protein sequence

>Msa0518000

MYSSPPPPRKLTNFTSRTHAPCHRKKKPTDSSSRVTKTMTNIMARAKYAVVEKEDYSDCMCERCGSGEQPEELLLCDKCDKGFHMKCLRPVLARVPIGSWICPKCCSELERVKTPASPSPSSIKLSSLIRRTHAPHKIQKKLSYSSSSSTFEEEEGNKLLSLRAEYTVAEEEEDYGDLLCEQCGSGEQPEELLLCDKCDNGFHMKCVRPIVVRVPIGPWICPKCSDVKVKKLKKLSQKKILHFFGLRRDSLDSGNNRASSQDAMKRRRRPRPLVVQKKRRRLLPFVPTEDPDRRLKQMASLATALTALDIEFSNKLTYFPGMAPRSANRSILENGGMQALTKEDTKTLKHCIAMTKRGQFPPLMVVYDSCQGYTVEADSPIKDMTFIAEYTGDVDYIKKRESDDCDSMMTLIIAAKAADSLVICADKRGNIARFISGINNHTQEGRKKQNCKCVRYDVNGESRVLLVATRDISKGERLYYDYNGYVHEYPTHHFV*