Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520120 | KYP36080.1 | 64.000 | 125 | 41 | 2 | 1 | 121 | 1 | 125 | 3.42e-47 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520120 | A0A151R0K5 | 64.000 | 125 | 41 | 2 | 1 | 121 | 1 | 125 | 1.64e-47 | 166 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0520120 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520120 | MtrunA17_Chr2g0287651 | 61.468 | 109 | 38 | 1 | 1 | 105 | 117 | 225 | 1.13e-41 | 147 |
| Msa0520120 | MtrunA17_Chr1g0203051 | 38.679 | 106 | 61 | 1 | 4 | 105 | 124 | 229 | 1.11e-23 | 95.9 |
| Msa0520120 | MtrunA17_Chr1g0171741 | 35.294 | 85 | 50 | 2 | 4 | 84 | 178 | 261 | 1.88e-11 | 60.1 |
| Msa0520120 | MtrunA17_Chr5g0448761 | 31.481 | 108 | 69 | 2 | 2 | 104 | 104 | 211 | 3.39e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520120 | AT1G10240.2 | 37.000 | 100 | 56 | 2 | 2 | 95 | 93 | 191 | 1.49e-11 | 61.6 |
| Msa0520120 | AT1G10240.1 | 37.000 | 100 | 56 | 2 | 2 | 95 | 93 | 191 | 1.49e-11 | 61.6 |
| Msa0520120 | AT4G38180.1 | 31.776 | 107 | 69 | 2 | 2 | 104 | 117 | 223 | 2.98e-11 | 60.5 |
Find 32 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCAAAACATGTCATATAA+TGG | 0.273332 | 3_4:-72617454 | Msa0520120:CDS |
| ATCAAAACATGTCATATAAT+GGG | 0.298640 | 3_4:-72617453 | Msa0520120:CDS |
| GGCGAGCTGGACAATTATTC+CGG | 0.353940 | 3_4:+72617640 | None:intergenic |
| TCTGATCCGGTGTTGATAAC+TGG | 0.398541 | 3_4:-72616535 | Msa0520120:CDS |
| TACATTTATTTCCTGCATAC+CGG | 0.410227 | 3_4:-72617527 | Msa0520120:CDS |
| CAGTTTGTGTGCAATAGAAA+TGG | 0.414838 | 3_4:-72617723 | Msa0520120:CDS |
| AACACTTGACTAGGGTCAAT+AGG | 0.418818 | 3_4:-72617686 | Msa0520120:CDS |
| TCCTGCATACCGGGGATTGA+CGG | 0.449089 | 3_4:-72617517 | Msa0520120:CDS |
| TCCGTCAATCCCCGGTATGC+AGG | 0.460844 | 3_4:+72617516 | None:intergenic |
| GGGGTACATGGTGGCAAACA+AGG | 0.461825 | 3_4:-72617433 | Msa0520120:CDS |
| TCCGGTGTTGATAACTGGTC+TGG | 0.467260 | 3_4:-72616530 | Msa0520120:CDS |
| ACATTTATTTCCTGCATACC+GGG | 0.472445 | 3_4:-72617526 | Msa0520120:CDS |
| GCGAGCTGGACAATTATTCC+GGG | 0.478461 | 3_4:+72617641 | None:intergenic |
| TAAGAGTAATACCTCTGATC+CGG | 0.486946 | 3_4:-72616548 | Msa0520120:intron |
| TAACGTATACGAAGGCGAGC+TGG | 0.516616 | 3_4:+72617627 | None:intergenic |
| CTGGACAATTATTCCGGGTG+AGG | 0.532213 | 3_4:+72617646 | None:intergenic |
| ATGTCATATAATGGGGTACA+TGG | 0.556484 | 3_4:-72617445 | Msa0520120:CDS |
| TGGACAATTATTCCGGGTGA+GGG | 0.565731 | 3_4:+72617647 | None:intergenic |
| GAGAACATAGACCCCTCACC+CGG | 0.567472 | 3_4:-72617659 | Msa0520120:CDS |
| TATCAGCATCCGTCAATCCC+CGG | 0.577605 | 3_4:+72617508 | None:intergenic |
| GTTGACAGTATGCAATCGTA+TGG | 0.580581 | 3_4:-72617477 | Msa0520120:CDS |
| GGGTACATGGTGGCAAACAA+GGG | 0.589509 | 3_4:-72617432 | Msa0520120:CDS |
| TACATGGTGGCAAACAAGGG+TGG | 0.611316 | 3_4:-72617429 | Msa0520120:CDS |
| AGTTATCAACACCGGATCAG+AGG | 0.615238 | 3_4:+72616537 | None:intergenic |
| CATTTATTTCCTGCATACCG+GGG | 0.622384 | 3_4:-72617525 | Msa0520120:CDS |
| CTGGATTATAACGTATACGA+AGG | 0.628678 | 3_4:+72617619 | None:intergenic |
| TCCAGACCAGTTATCAACAC+CGG | 0.632781 | 3_4:+72616529 | None:intergenic |
| ATAATCCAGAAAGCTTGAGA+TGG | 0.638128 | 3_4:-72617605 | Msa0520120:intron |
| AGAAAGCTTGAGATGGAGAG+TGG | 0.639417 | 3_4:-72617598 | Msa0520120:CDS |
| GGACAATTATTCCGGGTGAG+GGG | 0.643647 | 3_4:+72617648 | None:intergenic |
| TCAAAACATGTCATATAATG+GGG | 0.649125 | 3_4:-72617452 | Msa0520120:CDS |
| TCATATAATGGGGTACATGG+TGG | 0.662255 | 3_4:-72617442 | Msa0520120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATGTATATATTTTGAT+GGG | + | chr3_4:72616632-72616651 | None:intergenic | 10.0% |
| !!! | AATAAATGTATATATTTTGA+TGG | + | chr3_4:72616633-72616652 | None:intergenic | 10.0% |
| !!! | ATAAATGTATATATTTTGAT+GGG | + | chr3_4:72616632-72616651 | None:intergenic | 10.0% |
| !!! | AATAAATGTATATATTTTGA+TGG | + | chr3_4:72616633-72616652 | None:intergenic | 10.0% |
| !!! | TAAATGTATATATTTTGATG+GGG | + | chr3_4:72616631-72616650 | None:intergenic | 15.0% |
| !!! | AAAGATTTGTATAACTATTT+TGG | - | chr3_4:72616789-72616808 | Msa0520120:intron | 15.0% |
| !!! | TCATATTTTACATATAACAT+AGG | + | chr3_4:72616894-72616913 | None:intergenic | 15.0% |
| !! | TTATATGTAAAATATGAGAA+GGG | - | chr3_4:72616897-72616916 | Msa0520120:intron | 15.0% |
| !!! | TAAATGTATATATTTTGATG+GGG | + | chr3_4:72616631-72616650 | None:intergenic | 15.0% |
| !!! | AAAGATTTGTATAACTATTT+TGG | - | chr3_4:72616789-72616808 | Msa0520120:intron | 15.0% |
| !!! | TCATATTTTACATATAACAT+AGG | + | chr3_4:72616894-72616913 | None:intergenic | 15.0% |
| !! | TTATATGTAAAATATGAGAA+GGG | - | chr3_4:72616897-72616916 | Msa0520120:intron | 15.0% |
| !! | TATCAAAACATGTCATATAA+TGG | - | chr3_4:72616716-72616735 | Msa0520120:intron | 20.0% |
| !! | ATCAAAACATGTCATATAAT+GGG | - | chr3_4:72616717-72616736 | Msa0520120:intron | 20.0% |
| !! | GTTATATGTAAAATATGAGA+AGG | - | chr3_4:72616896-72616915 | Msa0520120:intron | 20.0% |
| !!! | GAAATTGAAAAGATTGTTTT+GGG | - | chr3_4:72616929-72616948 | Msa0520120:intron | 20.0% |
| !!! | GTATTTATTTTTCTTGTATG+TGG | + | chr3_4:72617012-72617031 | None:intergenic | 20.0% |
| !! | AAATAAATACAATCTTCCTT+TGG | - | chr3_4:72617022-72617041 | Msa0520120:intron | 20.0% |
| !!! | ATTCACAAACGATTATTTTT+GGG | - | chr3_4:72617069-72617088 | Msa0520120:intron | 20.0% |
| !!! | TCTAACTTTTTTGAATATCT+CGG | + | chr3_4:72617702-72617721 | None:intergenic | 20.0% |
| !! | TATCAAAACATGTCATATAA+TGG | - | chr3_4:72616716-72616735 | Msa0520120:intron | 20.0% |
| !! | ATCAAAACATGTCATATAAT+GGG | - | chr3_4:72616717-72616736 | Msa0520120:intron | 20.0% |
| !! | GTTATATGTAAAATATGAGA+AGG | - | chr3_4:72616896-72616915 | Msa0520120:intron | 20.0% |
| !!! | GAAATTGAAAAGATTGTTTT+GGG | - | chr3_4:72616929-72616948 | Msa0520120:intron | 20.0% |
| !!! | GTATTTATTTTTCTTGTATG+TGG | + | chr3_4:72617012-72617031 | None:intergenic | 20.0% |
| !! | AAATAAATACAATCTTCCTT+TGG | - | chr3_4:72617022-72617041 | Msa0520120:intron | 20.0% |
| !!! | ATTCACAAACGATTATTTTT+GGG | - | chr3_4:72617069-72617088 | Msa0520120:intron | 20.0% |
| !!! | TCTAACTTTTTTGAATATCT+CGG | + | chr3_4:72617702-72617721 | None:intergenic | 20.0% |
| ! | TCAAAACATGTCATATAATG+GGG | - | chr3_4:72616718-72616737 | Msa0520120:intron | 25.0% |
| !!! | TAACTATTTTGGCAAGAAAA+TGG | - | chr3_4:72616800-72616819 | Msa0520120:intron | 25.0% |
| !!! | AACTATTTTGGCAAGAAAAT+GGG | - | chr3_4:72616801-72616820 | Msa0520120:intron | 25.0% |
| !!! | ATGGGTATTGATATTAAAGA+TGG | - | chr3_4:72616819-72616838 | Msa0520120:intron | 25.0% |
| !! | GGAAATTGAAAAGATTGTTT+TGG | - | chr3_4:72616928-72616947 | Msa0520120:intron | 25.0% |
| !!! | CGAAATGATTTTTTGTGTTT+TGG | - | chr3_4:72616966-72616985 | Msa0520120:intron | 25.0% |
| ! | CAAAAATAATCGTTTGTGAA+TGG | + | chr3_4:72617070-72617089 | None:intergenic | 25.0% |
| !! | CATTCACAAACGATTATTTT+TGG | - | chr3_4:72617068-72617087 | Msa0520120:intron | 25.0% |
| !!! | TTCACAAACGATTATTTTTG+GGG | - | chr3_4:72617070-72617089 | Msa0520120:intron | 25.0% |
| ! | AAACAATAGAGACATATACA+TGG | - | chr3_4:72617111-72617130 | Msa0520120:intron | 25.0% |
| ! | AACAATAGAGACATATACAT+GGG | - | chr3_4:72617112-72617131 | Msa0520120:intron | 25.0% |
| !!! | TACTTTCGAGATAAGTTTTT+TGG | - | chr3_4:72617455-72617474 | Msa0520120:CDS | 25.0% |
| ! | TCAAAACATGTCATATAATG+GGG | - | chr3_4:72616718-72616737 | Msa0520120:intron | 25.0% |
| !!! | TAACTATTTTGGCAAGAAAA+TGG | - | chr3_4:72616800-72616819 | Msa0520120:intron | 25.0% |
| !!! | AACTATTTTGGCAAGAAAAT+GGG | - | chr3_4:72616801-72616820 | Msa0520120:intron | 25.0% |
| !!! | ATGGGTATTGATATTAAAGA+TGG | - | chr3_4:72616819-72616838 | Msa0520120:intron | 25.0% |
| !! | GGAAATTGAAAAGATTGTTT+TGG | - | chr3_4:72616928-72616947 | Msa0520120:intron | 25.0% |
| !!! | CGAAATGATTTTTTGTGTTT+TGG | - | chr3_4:72616966-72616985 | Msa0520120:intron | 25.0% |
| ! | CAAAAATAATCGTTTGTGAA+TGG | + | chr3_4:72617070-72617089 | None:intergenic | 25.0% |
| !! | CATTCACAAACGATTATTTT+TGG | - | chr3_4:72617068-72617087 | Msa0520120:intron | 25.0% |
| !!! | TTCACAAACGATTATTTTTG+GGG | - | chr3_4:72617070-72617089 | Msa0520120:intron | 25.0% |
| ! | AAACAATAGAGACATATACA+TGG | - | chr3_4:72617111-72617130 | Msa0520120:intron | 25.0% |
| ! | AACAATAGAGACATATACAT+GGG | - | chr3_4:72617112-72617131 | Msa0520120:intron | 25.0% |
| !!! | TACTTTCGAGATAAGTTTTT+TGG | - | chr3_4:72617455-72617474 | Msa0520120:CDS | 25.0% |
| AAGCAAAAAACACTTGACTA+GGG | - | chr3_4:72616476-72616495 | Msa0520120:CDS | 30.0% | |
| TACATTTATTTCCTGCATAC+CGG | - | chr3_4:72616643-72616662 | Msa0520120:intron | 30.0% | |
| ! | CAATCTTTTCAATTTCCCAT+TGG | + | chr3_4:72616925-72616944 | None:intergenic | 30.0% |
| ! | AATTCGTTTCTAGAAGCAAT+GGG | - | chr3_4:72617140-72617159 | Msa0520120:intron | 30.0% |
| TTTCAAGAAAGCAATGTACT+CGG | - | chr3_4:72617316-72617335 | Msa0520120:intron | 30.0% | |
| AAAACTCTTCAAATTCCTCT+GGG | + | chr3_4:72617349-72617368 | None:intergenic | 30.0% | |
| ! | AGAGGAATTTGAAGAGTTTT+GGG | - | chr3_4:72617349-72617368 | Msa0520120:intron | 30.0% |
| ATACGAGAACAAGGAATTAT+GGG | - | chr3_4:72617424-72617443 | Msa0520120:CDS | 30.0% | |
| ! | AAACTTATCTCGAAAGTATG+CGG | + | chr3_4:72617453-72617472 | None:intergenic | 30.0% |
| !!! | ATAAGTTTTTTGGTCGCATA+CGG | - | chr3_4:72617465-72617484 | Msa0520120:CDS | 30.0% |
| AAGCAAAAAACACTTGACTA+GGG | - | chr3_4:72616476-72616495 | Msa0520120:CDS | 30.0% | |
| TACATTTATTTCCTGCATAC+CGG | - | chr3_4:72616643-72616662 | Msa0520120:intron | 30.0% | |
| ! | CAATCTTTTCAATTTCCCAT+TGG | + | chr3_4:72616925-72616944 | None:intergenic | 30.0% |
| ! | AATTCGTTTCTAGAAGCAAT+GGG | - | chr3_4:72617140-72617159 | Msa0520120:intron | 30.0% |
| TTTCAAGAAAGCAATGTACT+CGG | - | chr3_4:72617316-72617335 | Msa0520120:intron | 30.0% | |
| AAAACTCTTCAAATTCCTCT+GGG | + | chr3_4:72617349-72617368 | None:intergenic | 30.0% | |
| ! | AGAGGAATTTGAAGAGTTTT+GGG | - | chr3_4:72617349-72617368 | Msa0520120:intron | 30.0% |
| ATACGAGAACAAGGAATTAT+GGG | - | chr3_4:72617424-72617443 | Msa0520120:CDS | 30.0% | |
| ! | AAACTTATCTCGAAAGTATG+CGG | + | chr3_4:72617453-72617472 | None:intergenic | 30.0% |
| !!! | ATAAGTTTTTTGGTCGCATA+CGG | - | chr3_4:72617465-72617484 | Msa0520120:CDS | 30.0% |
| CAGTTTGTGTGCAATAGAAA+TGG | - | chr3_4:72616447-72616466 | Msa0520120:CDS | 35.0% | |
| GAAGCAAAAAACACTTGACT+AGG | - | chr3_4:72616475-72616494 | Msa0520120:CDS | 35.0% | |
| CTGGATTATAACGTATACGA+AGG | + | chr3_4:72616554-72616573 | None:intergenic | 35.0% | |
| ATAATCCAGAAAGCTTGAGA+TGG | - | chr3_4:72616565-72616584 | Msa0520120:intron | 35.0% | |
| ! | TGGAGAGTGGTAATTTTTGA+AGG | - | chr3_4:72616585-72616604 | Msa0520120:intron | 35.0% |
| ! | GGAGAGTGGTAATTTTTGAA+GGG | - | chr3_4:72616586-72616605 | Msa0520120:intron | 35.0% |
| !!! | ATTTTGATGGGGTTAGTTCA+TGG | + | chr3_4:72616620-72616639 | None:intergenic | 35.0% |
| ACATTTATTTCCTGCATACC+GGG | - | chr3_4:72616644-72616663 | Msa0520120:intron | 35.0% | |
| ! | ATGTCATATAATGGGGTACA+TGG | - | chr3_4:72616725-72616744 | Msa0520120:intron | 35.0% |
| TTGCTACTCTAAGCTATCTT+CGG | - | chr3_4:72616850-72616869 | Msa0520120:intron | 35.0% | |
| !! | AAATATGAGAAGGGTACCAA+TGG | - | chr3_4:72616906-72616925 | Msa0520120:intron | 35.0% |
| !! | AATATGAGAAGGGTACCAAT+GGG | - | chr3_4:72616907-72616926 | Msa0520120:intron | 35.0% |
| !!! | AAAAGATTGTTTTGGGCAGA+TGG | - | chr3_4:72616936-72616955 | Msa0520120:intron | 35.0% |
| ! | CTTCCTTTGGTAATATTCTC+TGG | - | chr3_4:72617035-72617054 | Msa0520120:intron | 35.0% |
| ! | GAATTCGTTTCTAGAAGCAA+TGG | - | chr3_4:72617139-72617158 | Msa0520120:intron | 35.0% |
| AAACTCTTCAAATTCCTCTG+GGG | + | chr3_4:72617348-72617367 | None:intergenic | 35.0% | |
| CAAAACTCTTCAAATTCCTC+TGG | + | chr3_4:72617350-72617369 | None:intergenic | 35.0% | |
| ! | CAGAGGAATTTGAAGAGTTT+TGG | - | chr3_4:72617348-72617367 | Msa0520120:intron | 35.0% |
| TGAGCTACAAGGTAACAATT+GGG | - | chr3_4:72617391-72617410 | Msa0520120:intron | 35.0% | |
| TTCCAAAACATACGAGAACA+AGG | - | chr3_4:72617415-72617434 | Msa0520120:intron | 35.0% | |
| ! | TTCCTTGTTCTCGTATGTTT+TGG | + | chr3_4:72617420-72617439 | None:intergenic | 35.0% |
| CATACGAGAACAAGGAATTA+TGG | - | chr3_4:72617423-72617442 | Msa0520120:CDS | 35.0% | |
| ATTGATTGCTTCACAATGAG+AGG | + | chr3_4:72617495-72617514 | None:intergenic | 35.0% | |
| TTCTATACTCTCTCAATGTG+TGG | + | chr3_4:72617580-72617599 | None:intergenic | 35.0% | |
| TAAGAGTAATACCTCTGATC+CGG | - | chr3_4:72617622-72617641 | Msa0520120:intron | 35.0% | |
| CAGTTTGTGTGCAATAGAAA+TGG | - | chr3_4:72616447-72616466 | Msa0520120:CDS | 35.0% | |
| GAAGCAAAAAACACTTGACT+AGG | - | chr3_4:72616475-72616494 | Msa0520120:CDS | 35.0% | |
| CTGGATTATAACGTATACGA+AGG | + | chr3_4:72616554-72616573 | None:intergenic | 35.0% | |
| ATAATCCAGAAAGCTTGAGA+TGG | - | chr3_4:72616565-72616584 | Msa0520120:intron | 35.0% | |
| ! | TGGAGAGTGGTAATTTTTGA+AGG | - | chr3_4:72616585-72616604 | Msa0520120:intron | 35.0% |
| ! | GGAGAGTGGTAATTTTTGAA+GGG | - | chr3_4:72616586-72616605 | Msa0520120:intron | 35.0% |
| !!! | ATTTTGATGGGGTTAGTTCA+TGG | + | chr3_4:72616620-72616639 | None:intergenic | 35.0% |
| ACATTTATTTCCTGCATACC+GGG | - | chr3_4:72616644-72616663 | Msa0520120:intron | 35.0% | |
| ! | ATGTCATATAATGGGGTACA+TGG | - | chr3_4:72616725-72616744 | Msa0520120:intron | 35.0% |
| TTGCTACTCTAAGCTATCTT+CGG | - | chr3_4:72616850-72616869 | Msa0520120:intron | 35.0% | |
| !! | AAATATGAGAAGGGTACCAA+TGG | - | chr3_4:72616906-72616925 | Msa0520120:intron | 35.0% |
| !! | AATATGAGAAGGGTACCAAT+GGG | - | chr3_4:72616907-72616926 | Msa0520120:intron | 35.0% |
| !!! | AAAAGATTGTTTTGGGCAGA+TGG | - | chr3_4:72616936-72616955 | Msa0520120:intron | 35.0% |
| ! | CTTCCTTTGGTAATATTCTC+TGG | - | chr3_4:72617035-72617054 | Msa0520120:intron | 35.0% |
| ! | GAATTCGTTTCTAGAAGCAA+TGG | - | chr3_4:72617139-72617158 | Msa0520120:intron | 35.0% |
| AAACTCTTCAAATTCCTCTG+GGG | + | chr3_4:72617348-72617367 | None:intergenic | 35.0% | |
| CAAAACTCTTCAAATTCCTC+TGG | + | chr3_4:72617350-72617369 | None:intergenic | 35.0% | |
| ! | CAGAGGAATTTGAAGAGTTT+TGG | - | chr3_4:72617348-72617367 | Msa0520120:intron | 35.0% |
| TGAGCTACAAGGTAACAATT+GGG | - | chr3_4:72617391-72617410 | Msa0520120:intron | 35.0% | |
| TTCCAAAACATACGAGAACA+AGG | - | chr3_4:72617415-72617434 | Msa0520120:intron | 35.0% | |
| ! | TTCCTTGTTCTCGTATGTTT+TGG | + | chr3_4:72617420-72617439 | None:intergenic | 35.0% |
| CATACGAGAACAAGGAATTA+TGG | - | chr3_4:72617423-72617442 | Msa0520120:CDS | 35.0% | |
| ATTGATTGCTTCACAATGAG+AGG | + | chr3_4:72617495-72617514 | None:intergenic | 35.0% | |
| TTCTATACTCTCTCAATGTG+TGG | + | chr3_4:72617580-72617599 | None:intergenic | 35.0% | |
| TAAGAGTAATACCTCTGATC+CGG | - | chr3_4:72617622-72617641 | Msa0520120:intron | 35.0% | |
| AACACTTGACTAGGGTCAAT+AGG | - | chr3_4:72616484-72616503 | Msa0520120:CDS | 40.0% | |
| CATTTATTTCCTGCATACCG+GGG | - | chr3_4:72616645-72616664 | Msa0520120:intron | 40.0% | |
| GTTGACAGTATGCAATCGTA+TGG | - | chr3_4:72616693-72616712 | Msa0520120:intron | 40.0% | |
| ! | TCATATAATGGGGTACATGG+TGG | - | chr3_4:72616728-72616747 | Msa0520120:intron | 40.0% |
| TGCTACTCTAAGCTATCTTC+GGG | - | chr3_4:72616851-72616870 | Msa0520120:intron | 40.0% | |
| CAGCCAGAGAATATTACCAA+AGG | + | chr3_4:72617041-72617060 | None:intergenic | 40.0% | |
| !!! | GATTATTTTTGGGGCTGCTT+TGG | - | chr3_4:72617079-72617098 | Msa0520120:intron | 40.0% |
| ! | TGATGGTGACATGTCTATGA+GGG | - | chr3_4:72617190-72617209 | Msa0520120:intron | 40.0% |
| CACAGTCTGTGAAATGCTTT+GGG | + | chr3_4:72617236-72617255 | None:intergenic | 40.0% | |
| ACACAGTCTGTGAAATGCTT+TGG | + | chr3_4:72617237-72617256 | None:intergenic | 40.0% | |
| GTGAGCTACAAGGTAACAAT+TGG | - | chr3_4:72617390-72617409 | Msa0520120:intron | 40.0% | |
| ATGTGTGGTCAAAGTTATGC+AGG | + | chr3_4:72617565-72617584 | None:intergenic | 40.0% | |
| AACACTTGACTAGGGTCAAT+AGG | - | chr3_4:72616484-72616503 | Msa0520120:CDS | 40.0% | |
| CATTTATTTCCTGCATACCG+GGG | - | chr3_4:72616645-72616664 | Msa0520120:intron | 40.0% | |
| GTTGACAGTATGCAATCGTA+TGG | - | chr3_4:72616693-72616712 | Msa0520120:intron | 40.0% | |
| ! | TCATATAATGGGGTACATGG+TGG | - | chr3_4:72616728-72616747 | Msa0520120:intron | 40.0% |
| TGCTACTCTAAGCTATCTTC+GGG | - | chr3_4:72616851-72616870 | Msa0520120:intron | 40.0% | |
| CAGCCAGAGAATATTACCAA+AGG | + | chr3_4:72617041-72617060 | None:intergenic | 40.0% | |
| !!! | GATTATTTTTGGGGCTGCTT+TGG | - | chr3_4:72617079-72617098 | Msa0520120:intron | 40.0% |
| ! | TGATGGTGACATGTCTATGA+GGG | - | chr3_4:72617190-72617209 | Msa0520120:intron | 40.0% |
| CACAGTCTGTGAAATGCTTT+GGG | + | chr3_4:72617236-72617255 | None:intergenic | 40.0% | |
| ACACAGTCTGTGAAATGCTT+TGG | + | chr3_4:72617237-72617256 | None:intergenic | 40.0% | |
| GTGAGCTACAAGGTAACAAT+TGG | - | chr3_4:72617390-72617409 | Msa0520120:intron | 40.0% | |
| ATGTGTGGTCAAAGTTATGC+AGG | + | chr3_4:72617565-72617584 | None:intergenic | 40.0% | |
| TGGACAATTATTCCGGGTGA+GGG | + | chr3_4:72616526-72616545 | None:intergenic | 45.0% | |
| ACTCTCCATCTCAAGCTTTC+TGG | + | chr3_4:72616573-72616592 | None:intergenic | 45.0% | |
| AGAAAGCTTGAGATGGAGAG+TGG | - | chr3_4:72616572-72616591 | Msa0520120:intron | 45.0% | |
| AAGGGTGGATATGATGCTGT+TGG | - | chr3_4:72616756-72616775 | Msa0520120:intron | 45.0% | |
| GCTACTCTAAGCTATCTTCG+GGG | - | chr3_4:72616852-72616871 | Msa0520120:intron | 45.0% | |
| CTACTCTAAGCTATCTTCGG+GGG | - | chr3_4:72616853-72616872 | Msa0520120:intron | 45.0% | |
| !!! | GATTGTTTTGGGCAGATGGA+TGG | - | chr3_4:72616940-72616959 | Msa0520120:intron | 45.0% |
| ! | CCATCAGTCACTACTGCTTT+TGG | + | chr3_4:72617176-72617195 | None:intergenic | 45.0% |
| CCAAAAGCAGTAGTGACTGA+TGG | - | chr3_4:72617173-72617192 | Msa0520120:intron | 45.0% | |
| ! | CTGATGGTGACATGTCTATG+AGG | - | chr3_4:72617189-72617208 | Msa0520120:intron | 45.0% |
| AGCATTCTTGTGCAAATGCC+AGG | + | chr3_4:72617261-72617280 | None:intergenic | 45.0% | |
| GTTGAGATGAGTGAGCTACA+AGG | - | chr3_4:72617380-72617399 | Msa0520120:intron | 45.0% | |
| AGTTATCAACACCGGATCAG+AGG | + | chr3_4:72617636-72617655 | None:intergenic | 45.0% | |
| !! | TCTGATCCGGTGTTGATAAC+TGG | - | chr3_4:72617635-72617654 | Msa0520120:CDS | 45.0% |
| TCCAGACCAGTTATCAACAC+CGG | + | chr3_4:72617644-72617663 | None:intergenic | 45.0% | |
| TGGACAATTATTCCGGGTGA+GGG | + | chr3_4:72616526-72616545 | None:intergenic | 45.0% | |
| ACTCTCCATCTCAAGCTTTC+TGG | + | chr3_4:72616573-72616592 | None:intergenic | 45.0% | |
| AGAAAGCTTGAGATGGAGAG+TGG | - | chr3_4:72616572-72616591 | Msa0520120:intron | 45.0% | |
| AAGGGTGGATATGATGCTGT+TGG | - | chr3_4:72616756-72616775 | Msa0520120:intron | 45.0% | |
| GCTACTCTAAGCTATCTTCG+GGG | - | chr3_4:72616852-72616871 | Msa0520120:intron | 45.0% | |
| CTACTCTAAGCTATCTTCGG+GGG | - | chr3_4:72616853-72616872 | Msa0520120:intron | 45.0% | |
| !!! | GATTGTTTTGGGCAGATGGA+TGG | - | chr3_4:72616940-72616959 | Msa0520120:intron | 45.0% |
| ! | CCATCAGTCACTACTGCTTT+TGG | + | chr3_4:72617176-72617195 | None:intergenic | 45.0% |
| CCAAAAGCAGTAGTGACTGA+TGG | - | chr3_4:72617173-72617192 | Msa0520120:intron | 45.0% | |
| ! | CTGATGGTGACATGTCTATG+AGG | - | chr3_4:72617189-72617208 | Msa0520120:intron | 45.0% |
| AGCATTCTTGTGCAAATGCC+AGG | + | chr3_4:72617261-72617280 | None:intergenic | 45.0% | |
| GTTGAGATGAGTGAGCTACA+AGG | - | chr3_4:72617380-72617399 | Msa0520120:intron | 45.0% | |
| AGTTATCAACACCGGATCAG+AGG | + | chr3_4:72617636-72617655 | None:intergenic | 45.0% | |
| !! | TCTGATCCGGTGTTGATAAC+TGG | - | chr3_4:72617635-72617654 | Msa0520120:CDS | 45.0% |
| TCCAGACCAGTTATCAACAC+CGG | + | chr3_4:72617644-72617663 | None:intergenic | 45.0% | |
| GGACAATTATTCCGGGTGAG+GGG | + | chr3_4:72616525-72616544 | None:intergenic | 50.0% | |
| CTGGACAATTATTCCGGGTG+AGG | + | chr3_4:72616527-72616546 | None:intergenic | 50.0% | |
| GCGAGCTGGACAATTATTCC+GGG | + | chr3_4:72616532-72616551 | None:intergenic | 50.0% | |
| GGCGAGCTGGACAATTATTC+CGG | + | chr3_4:72616533-72616552 | None:intergenic | 50.0% | |
| TAACGTATACGAAGGCGAGC+TGG | + | chr3_4:72616546-72616565 | None:intergenic | 50.0% | |
| TATCAGCATCCGTCAATCCC+CGG | + | chr3_4:72616665-72616684 | None:intergenic | 50.0% | |
| GGGTACATGGTGGCAAACAA+GGG | - | chr3_4:72616738-72616757 | Msa0520120:intron | 50.0% | |
| TACATGGTGGCAAACAAGGG+TGG | - | chr3_4:72616741-72616760 | Msa0520120:intron | 50.0% | |
| TCTAAGCTATCTTCGGGGGA+AGG | - | chr3_4:72616857-72616876 | Msa0520120:intron | 50.0% | |
| CATTTCACAGACTGTGTGCC+TGG | - | chr3_4:72617240-72617259 | Msa0520120:intron | 50.0% | |
| !! | TCCGGTGTTGATAACTGGTC+TGG | - | chr3_4:72617640-72617659 | Msa0520120:CDS | 50.0% |
| GGACAATTATTCCGGGTGAG+GGG | + | chr3_4:72616525-72616544 | None:intergenic | 50.0% | |
| CTGGACAATTATTCCGGGTG+AGG | + | chr3_4:72616527-72616546 | None:intergenic | 50.0% | |
| GCGAGCTGGACAATTATTCC+GGG | + | chr3_4:72616532-72616551 | None:intergenic | 50.0% | |
| GGCGAGCTGGACAATTATTC+CGG | + | chr3_4:72616533-72616552 | None:intergenic | 50.0% | |
| TAACGTATACGAAGGCGAGC+TGG | + | chr3_4:72616546-72616565 | None:intergenic | 50.0% | |
| TATCAGCATCCGTCAATCCC+CGG | + | chr3_4:72616665-72616684 | None:intergenic | 50.0% | |
| GGGTACATGGTGGCAAACAA+GGG | - | chr3_4:72616738-72616757 | Msa0520120:intron | 50.0% | |
| TACATGGTGGCAAACAAGGG+TGG | - | chr3_4:72616741-72616760 | Msa0520120:intron | 50.0% | |
| TCTAAGCTATCTTCGGGGGA+AGG | - | chr3_4:72616857-72616876 | Msa0520120:intron | 50.0% | |
| CATTTCACAGACTGTGTGCC+TGG | - | chr3_4:72617240-72617259 | Msa0520120:intron | 50.0% | |
| !! | TCCGGTGTTGATAACTGGTC+TGG | - | chr3_4:72617640-72617659 | Msa0520120:CDS | 50.0% |
| GAGAACATAGACCCCTCACC+CGG | - | chr3_4:72616511-72616530 | Msa0520120:CDS | 55.0% | |
| TCCTGCATACCGGGGATTGA+CGG | - | chr3_4:72616653-72616672 | Msa0520120:intron | 55.0% | |
| GGGGTACATGGTGGCAAACA+AGG | - | chr3_4:72616737-72616756 | Msa0520120:intron | 55.0% | |
| AAGCTATCTTCGGGGGAAGG+CGG | - | chr3_4:72616860-72616879 | Msa0520120:intron | 55.0% | |
| GTACTCGGATTTCACCCCAG+AGG | - | chr3_4:72617331-72617350 | Msa0520120:intron | 55.0% | |
| GAGAACATAGACCCCTCACC+CGG | - | chr3_4:72616511-72616530 | Msa0520120:CDS | 55.0% | |
| TCCTGCATACCGGGGATTGA+CGG | - | chr3_4:72616653-72616672 | Msa0520120:intron | 55.0% | |
| GGGGTACATGGTGGCAAACA+AGG | - | chr3_4:72616737-72616756 | Msa0520120:intron | 55.0% | |
| AAGCTATCTTCGGGGGAAGG+CGG | - | chr3_4:72616860-72616879 | Msa0520120:intron | 55.0% | |
| GTACTCGGATTTCACCCCAG+AGG | - | chr3_4:72617331-72617350 | Msa0520120:intron | 55.0% | |
| TCCGTCAATCCCCGGTATGC+AGG | + | chr3_4:72616657-72616676 | None:intergenic | 60.0% | |
| AGCTATCTTCGGGGGAAGGC+GGG | - | chr3_4:72616861-72616880 | Msa0520120:intron | 60.0% | |
| TCCGTCAATCCCCGGTATGC+AGG | + | chr3_4:72616657-72616676 | None:intergenic | 60.0% | |
| AGCTATCTTCGGGGGAAGGC+GGG | - | chr3_4:72616861-72616880 | Msa0520120:intron | 60.0% | |
| ! | TCTTCGGGGGAAGGCGGGCT+TGG | - | chr3_4:72616866-72616885 | Msa0520120:intron | 70.0% |
| ! | TCTTCGGGGGAAGGCGGGCT+TGG | - | chr3_4:72616866-72616885 | Msa0520120:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 72616441 | 72617751 | 72616441 | ID=Msa0520120;Name=Msa0520120 |
| chr3_4 | mRNA | 72616441 | 72617751 | 72616441 | ID=Msa0520120-mRNA-1;Parent=Msa0520120;Name=Msa0520120-mRNA-1;_AED=0.32;_eAED=0.40;_QI=0|0|0|1|0|0|3|0|149 |
| chr3_4 | exon | 72617631 | 72617751 | 72617631 | ID=Msa0520120-mRNA-1:exon:20146;Parent=Msa0520120-mRNA-1 |
| chr3_4 | exon | 72617419 | 72617618 | 72617419 | ID=Msa0520120-mRNA-1:exon:20145;Parent=Msa0520120-mRNA-1 |
| chr3_4 | exon | 72616441 | 72616566 | 72616441 | ID=Msa0520120-mRNA-1:exon:20144;Parent=Msa0520120-mRNA-1 |
| chr3_4 | CDS | 72617631 | 72617751 | 72617631 | ID=Msa0520120-mRNA-1:cds;Parent=Msa0520120-mRNA-1 |
| chr3_4 | CDS | 72617419 | 72617618 | 72617419 | ID=Msa0520120-mRNA-1:cds;Parent=Msa0520120-mRNA-1 |
| chr3_4 | CDS | 72616441 | 72616566 | 72616441 | ID=Msa0520120-mRNA-1:cds;Parent=Msa0520120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
