Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520150 | XP_039687742.1 | 93.963 | 381 | 20 | 1 | 1 | 381 | 1 | 378 | 0.0 | 721 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520150 | sp|O80982|HSFA2_ARATH | 51.695 | 354 | 117 | 8 | 36 | 379 | 31 | 340 | 2.68e-118 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520150 | G7J7P1 | 93.963 | 381 | 20 | 1 | 1 | 381 | 1 | 378 | 0.0 | 721 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0520150 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520150 | MtrunA17_Chr3g0135831 | 93.963 | 381 | 20 | 1 | 1 | 381 | 1 | 378 | 0.0 | 721 |
| Msa0520150 | MtrunA17_Chr7g0260331 | 55.731 | 253 | 104 | 2 | 8 | 252 | 8 | 260 | 5.31e-92 | 280 |
| Msa0520150 | MtrunA17_Chr1g0204741 | 62.037 | 216 | 75 | 4 | 36 | 246 | 27 | 240 | 5.61e-90 | 274 |
| Msa0520150 | MtrunA17_Chr5g0410881 | 55.804 | 224 | 83 | 4 | 36 | 247 | 21 | 240 | 3.13e-81 | 257 |
| Msa0520150 | MtrunA17_Chr4g0071051 | 40.970 | 371 | 175 | 11 | 24 | 376 | 76 | 420 | 1.29e-78 | 248 |
| Msa0520150 | MtrunA17_Chr4g0039891 | 55.288 | 208 | 85 | 2 | 48 | 247 | 11 | 218 | 9.67e-74 | 237 |
| Msa0520150 | MtrunA17_Chr1g0185131 | 43.564 | 303 | 145 | 8 | 36 | 331 | 19 | 302 | 6.37e-72 | 228 |
| Msa0520150 | MtrunA17_Chr6g0485571 | 44.279 | 201 | 108 | 2 | 49 | 249 | 11 | 207 | 3.32e-51 | 174 |
| Msa0520150 | MtrunA17_Chr8g0392001 | 46.392 | 194 | 97 | 2 | 49 | 235 | 22 | 215 | 6.92e-49 | 169 |
| Msa0520150 | MtrunA17_Chr8g0379701 | 42.326 | 215 | 106 | 3 | 48 | 255 | 11 | 214 | 9.20e-49 | 169 |
| Msa0520150 | MtrunA17_Chr2g0330821 | 41.451 | 193 | 109 | 1 | 43 | 235 | 73 | 261 | 2.27e-46 | 162 |
| Msa0520150 | MtrunA17_Chr8g0378061 | 43.284 | 201 | 104 | 5 | 50 | 247 | 23 | 216 | 3.17e-46 | 164 |
| Msa0520150 | MtrunA17_Chr6g0467041 | 42.365 | 203 | 107 | 5 | 49 | 248 | 22 | 217 | 3.18e-46 | 161 |
| Msa0520150 | MtrunA17_Chr2g0284481 | 41.243 | 177 | 101 | 1 | 48 | 221 | 14 | 190 | 2.17e-43 | 155 |
| Msa0520150 | MtrunA17_Chr5g0397881 | 62.766 | 94 | 35 | 0 | 47 | 140 | 22 | 115 | 4.47e-38 | 140 |
| Msa0520150 | MtrunA17_Chr7g0257331 | 45.679 | 162 | 75 | 3 | 40 | 188 | 9 | 170 | 4.96e-38 | 136 |
| Msa0520150 | MtrunA17_Chr3g0134031 | 56.757 | 111 | 43 | 1 | 43 | 153 | 18 | 123 | 7.15e-37 | 137 |
| Msa0520150 | MtrunA17_Chr5g0402291 | 55.882 | 102 | 45 | 0 | 46 | 147 | 6 | 107 | 8.21e-37 | 135 |
| Msa0520150 | MtrunA17_Chr6g0472421 | 58.511 | 94 | 39 | 0 | 47 | 140 | 31 | 124 | 9.37e-35 | 130 |
| Msa0520150 | MtrunA17_Chr1g0203601 | 54.206 | 107 | 49 | 0 | 47 | 153 | 16 | 122 | 1.15e-34 | 129 |
| Msa0520150 | MtrunA17_Chr1g0179311 | 39.024 | 205 | 119 | 4 | 109 | 310 | 14 | 215 | 4.19e-34 | 129 |
| Msa0520150 | MtrunA17_Chr5g0441531 | 42.138 | 159 | 73 | 1 | 47 | 186 | 23 | 181 | 4.28e-34 | 127 |
| Msa0520150 | MtrunA17_Chr8g0375041 | 52.727 | 110 | 50 | 1 | 44 | 153 | 4 | 111 | 5.77e-34 | 126 |
| Msa0520150 | MtrunA17_Chr4g0047421 | 47.009 | 117 | 53 | 2 | 28 | 140 | 17 | 128 | 5.46e-29 | 112 |
| Msa0520150 | MtrunA17_Chr1g0179321 | 65.333 | 75 | 24 | 2 | 35 | 108 | 35 | 108 | 3.56e-26 | 101 |
| Msa0520150 | MtrunA17_Chr4g0023771 | 51.429 | 70 | 33 | 1 | 40 | 108 | 6 | 75 | 6.52e-18 | 79.0 |
| Msa0520150 | MtrunA17_Chr2g0330841 | 32.051 | 156 | 97 | 4 | 96 | 247 | 26 | 176 | 6.41e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520150 | AT2G26150.1 | 51.695 | 354 | 117 | 8 | 36 | 379 | 31 | 340 | 2.72e-119 | 350 |
| Msa0520150 | AT2G26150.4 | 51.695 | 354 | 117 | 8 | 36 | 379 | 31 | 340 | 2.72e-119 | 350 |
| Msa0520150 | AT3G22830.1 | 44.538 | 357 | 157 | 8 | 36 | 359 | 48 | 396 | 2.73e-89 | 275 |
| Msa0520150 | AT3G51910.1 | 54.911 | 224 | 80 | 3 | 39 | 256 | 19 | 227 | 4.28e-76 | 237 |
| Msa0520150 | AT4G17750.1 | 51.570 | 223 | 91 | 2 | 47 | 252 | 50 | 272 | 5.65e-76 | 243 |
| Msa0520150 | AT1G32330.2 | 47.653 | 277 | 120 | 7 | 15 | 274 | 3 | 271 | 1.42e-75 | 242 |
| Msa0520150 | AT1G32330.1 | 47.653 | 277 | 120 | 7 | 15 | 274 | 3 | 271 | 1.45e-75 | 242 |
| Msa0520150 | AT5G16820.1 | 50.655 | 229 | 97 | 3 | 27 | 244 | 10 | 233 | 4.48e-75 | 241 |
| Msa0520150 | AT5G16820.2 | 50.655 | 229 | 97 | 3 | 27 | 244 | 10 | 233 | 4.48e-75 | 241 |
| Msa0520150 | AT3G02990.1 | 53.589 | 209 | 86 | 3 | 48 | 247 | 22 | 228 | 1.45e-73 | 236 |
| Msa0520150 | AT5G43840.1 | 43.369 | 279 | 124 | 5 | 36 | 297 | 6 | 267 | 2.31e-69 | 220 |
| Msa0520150 | AT3G63350.1 | 42.138 | 318 | 118 | 7 | 25 | 331 | 4 | 266 | 1.97e-68 | 217 |
| Msa0520150 | AT2G26150.3 | 44.128 | 281 | 103 | 8 | 109 | 379 | 49 | 285 | 3.26e-66 | 212 |
| Msa0520150 | AT2G26150.2 | 44.128 | 281 | 103 | 8 | 109 | 379 | 49 | 285 | 3.26e-66 | 212 |
| Msa0520150 | AT5G03720.2 | 46.256 | 227 | 110 | 4 | 17 | 240 | 24 | 241 | 4.31e-61 | 202 |
| Msa0520150 | AT5G03720.1 | 46.256 | 227 | 110 | 4 | 17 | 240 | 24 | 241 | 4.31e-61 | 202 |
| Msa0520150 | AT5G54070.1 | 43.318 | 217 | 108 | 3 | 42 | 257 | 63 | 265 | 8.85e-56 | 186 |
| Msa0520150 | AT1G67970.1 | 47.872 | 188 | 97 | 1 | 49 | 235 | 19 | 206 | 1.05e-55 | 187 |
| Msa0520150 | AT4G13980.1 | 39.698 | 199 | 115 | 2 | 50 | 247 | 24 | 218 | 7.73e-48 | 169 |
| Msa0520150 | AT3G24520.1 | 45.411 | 207 | 86 | 5 | 49 | 251 | 17 | 200 | 1.86e-47 | 164 |
| Msa0520150 | AT5G45710.3 | 32.770 | 296 | 180 | 6 | 48 | 333 | 12 | 298 | 2.19e-38 | 141 |
| Msa0520150 | AT5G45710.1 | 32.770 | 296 | 180 | 6 | 48 | 333 | 12 | 298 | 2.19e-38 | 141 |
| Msa0520150 | AT4G36990.1 | 52.632 | 114 | 48 | 1 | 47 | 160 | 12 | 119 | 1.56e-36 | 134 |
| Msa0520150 | AT1G46264.1 | 38.191 | 199 | 70 | 3 | 39 | 187 | 24 | 219 | 2.74e-36 | 135 |
| Msa0520150 | AT2G41690.1 | 48.889 | 135 | 52 | 2 | 6 | 140 | 14 | 131 | 6.28e-36 | 132 |
| Msa0520150 | AT4G18880.1 | 44.000 | 175 | 97 | 1 | 48 | 221 | 14 | 188 | 1.22e-35 | 135 |
| Msa0520150 | AT5G62020.1 | 55.882 | 102 | 45 | 0 | 47 | 148 | 21 | 122 | 1.60e-35 | 132 |
| Msa0520150 | AT4G11660.1 | 58.511 | 94 | 39 | 0 | 47 | 140 | 57 | 150 | 2.13e-34 | 131 |
| Msa0520150 | AT4G18870.1 | 34.711 | 121 | 75 | 1 | 49 | 165 | 146 | 266 | 1.30e-20 | 91.3 |
| Msa0520150 | AT4G18870.1 | 43.678 | 87 | 48 | 1 | 50 | 136 | 14 | 99 | 7.58e-18 | 83.6 |
| Msa0520150 | AT1G77570.1 | 36.667 | 90 | 54 | 2 | 50 | 136 | 27 | 116 | 5.87e-13 | 66.2 |
Find 136 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTTACTTTCTTTGTTTC+TGG | 0.032622 | 3_4:+72652978 | Msa0520150:three_prime_UTR |
| AATAAATAATTGCTTTATTT+TGG | 0.042159 | 3_4:-72652632 | None:intergenic |
| TTATCCTGCTCAAAGAAATT+TGG | 0.147116 | 3_4:-72652872 | None:intergenic |
| TTGGATTAAAATATATATTA+AGG | 0.154046 | 3_4:+72653069 | Msa0520150:three_prime_UTR |
| GGTGGTGCTTGTATTGAATT+AGG | 0.178257 | 3_4:+72651600 | Msa0520150:CDS |
| GAGAATTTGCAAAATGATTC+TGG | 0.205764 | 3_4:+72651903 | Msa0520150:CDS |
| TGTGATGTGATAATCGATTT+TGG | 0.223359 | 3_4:-72650795 | None:intergenic |
| CTCGTAATAGCTTTGTTGTT+TGG | 0.240497 | 3_4:+72651069 | Msa0520150:CDS |
| AAATGGAGCAACTTAATTTA+AGG | 0.257017 | 3_4:-72650676 | None:intergenic |
| AAGTGGTAATGAGAGTAATT+TGG | 0.259305 | 3_4:+72652088 | Msa0520150:CDS |
| TCATCCGATTCTGTTCCTTT+TGG | 0.270697 | 3_4:+72652788 | Msa0520150:three_prime_UTR |
| TTCAACAACATCAAAGGTTT+TGG | 0.271463 | 3_4:-72651009 | None:intergenic |
| GAGACGGGTGAAGAGAAATT+TGG | 0.277699 | 3_4:-72650628 | None:intergenic |
| TGCAATCCTTCCATTGGTTT+TGG | 0.278910 | 3_4:-72650960 | None:intergenic |
| CCACTGATTCCATTGTTTCA+TGG | 0.288131 | 3_4:+72651039 | Msa0520150:CDS |
| TTGAGTGAATATTAGTGATT+TGG | 0.288171 | 3_4:+72653210 | Msa0520150:three_prime_UTR |
| TCGTAATAGCTTTGTTGTTT+GGG | 0.292309 | 3_4:+72651070 | Msa0520150:CDS |
| TGAGAGCTTACAATTGATTA+TGG | 0.300006 | 3_4:+72653108 | Msa0520150:three_prime_UTR |
| TGGCTGAGATTGTGAAATTA+AGG | 0.302674 | 3_4:+72651679 | Msa0520150:CDS |
| AACTCTTCATCTTCCTCTTC+GGG | 0.307939 | 3_4:+72650924 | Msa0520150:CDS |
| TAATCTCGTGGAGGAGGATA+TGG | 0.315941 | 3_4:+72653010 | Msa0520150:three_prime_UTR |
| TGTATTGAATTAGGGGAGTA+TGG | 0.320828 | 3_4:+72651609 | Msa0520150:CDS |
| TAACTCTTCATCTTCCTCTT+CGG | 0.322245 | 3_4:+72650923 | Msa0520150:CDS |
| GGGATTAGATAGATAGATTA+GGG | 0.322408 | 3_4:-72650706 | None:intergenic |
| TCACTTGAGTTGCACCTTGC+TGG | 0.323733 | 3_4:+72652327 | Msa0520150:three_prime_UTR |
| TATGAAAGGTAGTTATGTTA+TGG | 0.348109 | 3_4:-72650747 | None:intergenic |
| TGGTAGAAAAGAATGATAAT+TGG | 0.355979 | 3_4:+72652219 | Msa0520150:CDS |
| GCAGAACCTTGTTGATCAAA+TGG | 0.360342 | 3_4:+72652253 | Msa0520150:CDS |
| CATTGTGAATTGAGTGTTGC+TGG | 0.360684 | 3_4:+72653257 | Msa0520150:three_prime_UTR |
| ATGATGTGTTGCACGCAATT+TGG | 0.362150 | 3_4:-72652712 | None:intergenic |
| GCTCACTGCTAGTTCGAGTT+TGG | 0.362423 | 3_4:+72651881 | Msa0520150:CDS |
| TTAGCATATGTCAGTGTTGT+TGG | 0.370710 | 3_4:+72650888 | Msa0520150:CDS |
| TGATGTGCCCGTGGAGGATT+TGG | 0.372993 | 3_4:+72652199 | Msa0520150:CDS |
| TGGATTAAAATATATATTAA+GGG | 0.382620 | 3_4:+72653070 | Msa0520150:three_prime_UTR |
| GTGGTGCTTGTATTGAATTA+GGG | 0.384837 | 3_4:+72651601 | Msa0520150:CDS |
| TGGGATTAGATAGATAGATT+AGG | 0.385705 | 3_4:-72650707 | None:intergenic |
| TGAATCAAGCAGTGAAGTTA+AGG | 0.388539 | 3_4:+72652040 | Msa0520150:CDS |
| TGTTAGTTGAATGTTGGATT+TGG | 0.388696 | 3_4:+72653149 | Msa0520150:three_prime_UTR |
| AGAGAAATTTGGTTTGGTAA+TGG | 0.389818 | 3_4:-72650617 | None:intergenic |
| AAAATGATTCTGGAGCTATA+AGG | 0.397500 | 3_4:+72651913 | Msa0520150:CDS |
| AATGGAAGGATTGCACGAAA+TGG | 0.400329 | 3_4:+72650968 | Msa0520150:CDS |
| AGTGGTAATGAGAGTAATTT+GGG | 0.400460 | 3_4:+72652089 | Msa0520150:CDS |
| GATGATTGAATGGGAAAAGT+TGG | 0.400946 | 3_4:+72652661 | Msa0520150:three_prime_UTR |
| TATTTGTCAAGATGATTGAA+TGG | 0.413414 | 3_4:+72652651 | Msa0520150:three_prime_UTR |
| CAGAACCTTGTTGATCAAAT+GGG | 0.416106 | 3_4:+72652254 | Msa0520150:CDS |
| TTGAGAGGTTGAGAAGGGAC+AGG | 0.416306 | 3_4:+72651646 | Msa0520150:CDS |
| GGATCCAAATTTCTTTGAGC+AGG | 0.425783 | 3_4:+72652868 | Msa0520150:three_prime_UTR |
| TTCTACAACCAATTTGACTA+AGG | 0.426171 | 3_4:-72652284 | None:intergenic |
| AAGGGAGCAATTATCTACTA+TGG | 0.429852 | 3_4:+72651719 | Msa0520150:CDS |
| TAGATTAGGGAAGAGTGAAA+TGG | 0.439868 | 3_4:-72650693 | None:intergenic |
| CCAATCACAACTTCATCATC+TGG | 0.442879 | 3_4:-72652161 | None:intergenic |
| AAATGATTCTGGAGCTATAA+GGG | 0.444673 | 3_4:+72651914 | Msa0520150:CDS |
| ATTTGTCAAGATGATTGAAT+GGG | 0.451022 | 3_4:+72652652 | Msa0520150:three_prime_UTR |
| TTAGGGGAGTATGGTCTTGA+AGG | 0.455498 | 3_4:+72651618 | Msa0520150:CDS |
| ATGATTGAATGGGAAAAGTT+GGG | 0.459488 | 3_4:+72652662 | Msa0520150:three_prime_UTR |
| GAAGGGAATTAGAGTGAAAG+AGG | 0.460183 | 3_4:+72650857 | Msa0520150:CDS |
| GTGAGATTGAGAGGTTGAGA+AGG | 0.465030 | 3_4:+72651640 | Msa0520150:CDS |
| GATTCCCACCAACCAACTCT+TGG | 0.469023 | 3_4:-72652139 | None:intergenic |
| CATTGTTCGCGGGTCAGTCT+AGG | 0.473031 | 3_4:+72652928 | Msa0520150:three_prime_UTR |
| ATGGAAGGATTGCACGAAAT+GGG | 0.473051 | 3_4:+72650969 | Msa0520150:CDS |
| TAATCAACCACAGACTCAAT+TGG | 0.480632 | 3_4:-72651942 | None:intergenic |
| ATTTCGTGCAATCCTTCCAT+TGG | 0.481224 | 3_4:-72650966 | None:intergenic |
| GGGTGAAGAGAAATTTGGTT+TGG | 0.483584 | 3_4:-72650623 | None:intergenic |
| GGCAGCAGCAGCATAGTTCA+AGG | 0.485663 | 3_4:+72651700 | Msa0520150:CDS |
| CATTAGGATAGAATAAGAAA+TGG | 0.486421 | 3_4:-72652582 | None:intergenic |
| GCGTTGAAATGAAGCGAAAA+CGG | 0.487154 | 3_4:+72651856 | Msa0520150:CDS |
| GGAAAGTTGGTAAGTATGAA+AGG | 0.490210 | 3_4:-72650761 | None:intergenic |
| ATCCTCTTTGACAAGTCTAA+AGG | 0.490378 | 3_4:-72652849 | None:intergenic |
| CGTGCAACACATCATTCGTT+AGG | 0.492867 | 3_4:+72652720 | Msa0520150:three_prime_UTR |
| AGCAACTTAATTTAAGGCGG+TGG | 0.494578 | 3_4:-72650670 | None:intergenic |
| AGGGTCTCATTGTTGTGTGC+TGG | 0.495713 | 3_4:+72653315 | Msa0520150:three_prime_UTR |
| TGAGATTGAGAGGTTGAGAA+GGG | 0.495911 | 3_4:+72651641 | Msa0520150:CDS |
| TATGTTCTGTACATTGTTCG+CGG | 0.499946 | 3_4:+72652917 | Msa0520150:three_prime_UTR |
| CGATGGGAGTTTGCGAACGA+AGG | 0.501252 | 3_4:+72651492 | Msa0520150:CDS |
| AGCATCAACTAACTCAATGA+AGG | 0.501749 | 3_4:+72650839 | Msa0520150:exon |
| CAGAGATAACAGTTCCCAAA+AGG | 0.501766 | 3_4:-72652803 | None:intergenic |
| TTCGCAAACTCCCATCGATC+CGG | 0.510214 | 3_4:-72651486 | None:intergenic |
| CTCCTTTAGACTTGTCAAAG+AGG | 0.523253 | 3_4:+72652847 | Msa0520150:three_prime_UTR |
| TGAGAGGTTGAGAAGGGACA+GGG | 0.524671 | 3_4:+72651647 | Msa0520150:CDS |
| TTTAAGGCGGTGGATAGAGT+AGG | 0.530038 | 3_4:-72650660 | None:intergenic |
| CCAGATGATGAAGTTGTGAT+TGG | 0.531597 | 3_4:+72652161 | Msa0520150:CDS |
| GACTACTATTGAGTCTGAGA+TGG | 0.532873 | 3_4:+72651992 | Msa0520150:CDS |
| ATGTTCTGTACATTGTTCGC+GGG | 0.535194 | 3_4:+72652918 | Msa0520150:three_prime_UTR |
| CTGAACCAAGAGTTGGTTGG+TGG | 0.536158 | 3_4:+72652134 | Msa0520150:CDS |
| CAAAACCCATTTGATCAACA+AGG | 0.537986 | 3_4:-72652259 | None:intergenic |
| AAAAGTTGATCCGGATCGAT+GGG | 0.538609 | 3_4:+72651476 | Msa0520150:CDS |
| AGTAGGAAGGTTCTAGAGAC+GGG | 0.539491 | 3_4:-72650643 | None:intergenic |
| GAAAAGTTGATCCGGATCGA+TGG | 0.539674 | 3_4:+72651475 | Msa0520150:CDS |
| GATGGGAGTTTGCGAACGAA+GGG | 0.539714 | 3_4:+72651493 | Msa0520150:CDS |
| AATAAAGGATACACATGTGA+TGG | 0.541183 | 3_4:-72652483 | None:intergenic |
| CAAGCTATGCAGCAAGAGAC+CGG | 0.541548 | 3_4:+72651579 | Msa0520150:CDS |
| GTTCCCAAAAGGAACAGAAT+CGG | 0.541652 | 3_4:-72652792 | None:intergenic |
| GGATAGAATAAGAAATGGTA+TGG | 0.543377 | 3_4:-72652577 | None:intergenic |
| GGATTTACTGAACCAAGAGT+TGG | 0.543897 | 3_4:+72652127 | Msa0520150:CDS |
| GAATTGTAAATCGAATAACT+TGG | 0.545257 | 3_4:+72653050 | Msa0520150:three_prime_UTR |
| TTTGGGTGATGCTGTGTGGG+AGG | 0.547697 | 3_4:+72652106 | Msa0520150:CDS |
| AATTATCTACTATGGAAGCT+AGG | 0.551266 | 3_4:+72651727 | Msa0520150:CDS |
| TAATTTGGGTGATGCTGTGT+GGG | 0.557732 | 3_4:+72652103 | Msa0520150:CDS |
| TGGATCTTCAACAACATCAA+AGG | 0.559140 | 3_4:-72651015 | None:intergenic |
| GAGTAGGAAGGTTCTAGAGA+CGG | 0.570181 | 3_4:-72650644 | None:intergenic |
| AAATTACTCTCATTACCACT+TGG | 0.571022 | 3_4:-72652086 | None:intergenic |
| AAATCTTACACCAAAACCAA+TGG | 0.575232 | 3_4:+72650950 | Msa0520150:CDS |
| GGATGATTGTACTGCAGAAG+AGG | 0.580244 | 3_4:+72652460 | Msa0520150:three_prime_UTR |
| GTCTTGAAGGTGAGATTGAG+AGG | 0.580331 | 3_4:+72651631 | Msa0520150:CDS |
| GCAGCAGCAGCATAGTTCAA+GGG | 0.593127 | 3_4:+72651701 | Msa0520150:CDS |
| CCATGAAACAATGGAATCAG+TGG | 0.596228 | 3_4:-72651039 | None:intergenic |
| GAAACAATGGAATCAGTGGA+TGG | 0.602123 | 3_4:-72651035 | None:intergenic |
| CATCAGGCCCTGTTTACAAG+AGG | 0.603051 | 3_4:-72653344 | None:intergenic |
| TGGTGCTTGTATTGAATTAG+GGG | 0.604898 | 3_4:+72651602 | Msa0520150:CDS |
| CTCTCAAATTGATGTGCCCG+TGG | 0.607339 | 3_4:+72652190 | Msa0520150:CDS |
| GCATCAACTAACTCAATGAA+GGG | 0.610881 | 3_4:+72650840 | Msa0520150:exon |
| TGAACCAAGAGTTGGTTGGT+GGG | 0.615910 | 3_4:+72652135 | Msa0520150:CDS |
| TAATTCAATACAAGCACCAC+CGG | 0.616513 | 3_4:-72651598 | None:intergenic |
| GATTCCATTGTTTCATGGAG+CGG | 0.618876 | 3_4:+72651044 | Msa0520150:CDS |
| AAAGAATGATAATTGGACTG+TGG | 0.619356 | 3_4:+72652226 | Msa0520150:CDS |
| AACCACAGACTCAATTGGCA+CGG | 0.620284 | 3_4:-72651937 | None:intergenic |
| TGTAAGATTTGAACCCGAAG+AGG | 0.623342 | 3_4:-72650937 | None:intergenic |
| CTCTTGTCAAGAGCAGCAAG+AGG | 0.626219 | 3_4:+72651965 | Msa0520150:CDS |
| GGCCGTGCCAATTGAGTCTG+TGG | 0.628717 | 3_4:+72651935 | Msa0520150:CDS |
| GTAACGAGGTAAAATAGCAG+TGG | 0.630092 | 3_4:-72651108 | None:intergenic |
| AGCTCCGCTCCATGAAACAA+TGG | 0.631104 | 3_4:-72651048 | None:intergenic |
| TGTGAATTGAGTGTTGCTGG+TGG | 0.632910 | 3_4:+72653260 | Msa0520150:three_prime_UTR |
| TCTTGTCAAGAGCAGCAAGA+GGG | 0.633968 | 3_4:+72651966 | Msa0520150:CDS |
| CTTACACCAAAACCAATGGA+AGG | 0.637289 | 3_4:+72650954 | Msa0520150:CDS |
| TGGAGCAACTTAATTTAAGG+CGG | 0.645189 | 3_4:-72650673 | None:intergenic |
| TTACTGAACCAAGAGTTGGT+TGG | 0.648299 | 3_4:+72652131 | Msa0520150:CDS |
| GCACAGAATAGAGAGTTGAA+AGG | 0.656703 | 3_4:+72651834 | Msa0520150:CDS |
| TACTACAAATTACAAAACTG+AGG | 0.659342 | 3_4:-72653293 | None:intergenic |
| TCAAATTGATGTGCCCGTGG+AGG | 0.663302 | 3_4:+72652193 | Msa0520150:CDS |
| TCATTGAGTTCAGTTCCAAG+TGG | 0.665604 | 3_4:+72652071 | Msa0520150:CDS |
| AGGCGGTGGATAGAGTAGGA+AGG | 0.671667 | 3_4:-72650656 | None:intergenic |
| GTAATTTGGGTGATGCTGTG+TGG | 0.674970 | 3_4:+72652102 | Msa0520150:CDS |
| TTGAAATGAAGCGAAAACGG+AGG | 0.685238 | 3_4:+72651859 | Msa0520150:CDS |
| TTACTGTGTTTGAAGTAACG+AGG | 0.690403 | 3_4:-72651122 | None:intergenic |
| ATAACAAAGTCATACCAGCA+AGG | 0.702098 | 3_4:-72652341 | None:intergenic |
| GCTATGCAGCAAGAGACCGG+TGG | 0.749743 | 3_4:+72651582 | Msa0520150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATAATTGCTTTATTTT+GGG | - | chr3_4:72652634-72652653 | None:intergenic | 10.0% |
| !!! | AATAAATAATTGCTTTATTT+TGG | - | chr3_4:72652635-72652654 | None:intergenic | 10.0% |
| !! | TTGGATTAAAATATATATTA+AGG | + | chr3_4:72653069-72653088 | Msa0520150:three_prime_UTR | 10.0% |
| !! | TGGATTAAAATATATATTAA+GGG | + | chr3_4:72653070-72653089 | Msa0520150:three_prime_UTR | 10.0% |
| !! | TAATTGATGTAAAATATGAA+TGG | + | chr3_4:72652422-72652441 | Msa0520150:intron | 15.0% |
| !! | AAAATGTAGTTAAAAACATT+AGG | - | chr3_4:72652601-72652620 | None:intergenic | 15.0% |
| !!! | TCAATCTTTTATACAACAAT+TGG | + | chr3_4:72651812-72651831 | Msa0520150:CDS | 20.0% |
| !!! | TATGACTTTGTTATTGTTAT+TGG | + | chr3_4:72652350-72652369 | Msa0520150:intron | 20.0% |
| !! | TTGATAAATAATTTCTGTGA+TGG | + | chr3_4:72652399-72652418 | Msa0520150:intron | 20.0% |
| !!! | TGTTGTTTTGTTCAAAATAA+AGG | - | chr3_4:72652501-72652520 | None:intergenic | 20.0% |
| ! | AAATGGAGCAACTTAATTTA+AGG | - | chr3_4:72650679-72650698 | None:intergenic | 25.0% |
| !!! | GGTTTGTTTGTTTTAGTTTT+GGG | - | chr3_4:72650729-72650748 | None:intergenic | 25.0% |
| !!! | TGGTTTGTTTGTTTTAGTTT+TGG | - | chr3_4:72650730-72650749 | None:intergenic | 25.0% |
| ! | TATGAAAGGTAGTTATGTTA+TGG | - | chr3_4:72650750-72650769 | None:intergenic | 25.0% |
| ! | AAGTGATAGTTAACTTACAT+AGG | - | chr3_4:72651177-72651196 | None:intergenic | 25.0% |
| ! | TTGAATGTAATCATATGTGT+CGG | - | chr3_4:72651316-72651335 | None:intergenic | 25.0% |
| !! | AATTTTTGTGTTCATATGCA+GGG | + | chr3_4:72651447-72651466 | Msa0520150:intron | 25.0% |
| ! | TGGTAGAAAAGAATGATAAT+TGG | + | chr3_4:72652219-72652238 | Msa0520150:CDS | 25.0% |
| ! | CATTAGGATAGAATAAGAAA+TGG | - | chr3_4:72652585-72652604 | None:intergenic | 25.0% |
| !!! | TGTTTTTAACTACATTTTGC+AGG | + | chr3_4:72652603-72652622 | Msa0520150:three_prime_UTR | 25.0% |
| ! | TATTTGTCAAGATGATTGAA+TGG | + | chr3_4:72652651-72652670 | Msa0520150:three_prime_UTR | 25.0% |
| ! | ATTTGTCAAGATGATTGAAT+GGG | + | chr3_4:72652652-72652671 | Msa0520150:three_prime_UTR | 25.0% |
| ! | GAATTGTAAATCGAATAACT+TGG | + | chr3_4:72653050-72653069 | Msa0520150:three_prime_UTR | 25.0% |
| ! | TTGAGTGAATATTAGTGATT+TGG | + | chr3_4:72653210-72653229 | Msa0520150:three_prime_UTR | 25.0% |
| ! | TACTACAAATTACAAAACTG+AGG | - | chr3_4:72653296-72653315 | None:intergenic | 25.0% |
| !!! | TCAGTTTTGTAATTTGTAGT+AGG | + | chr3_4:72653295-72653314 | Msa0520150:three_prime_UTR | 25.0% |
| !!! | CAGTTTTGTAATTTGTAGTA+GGG | + | chr3_4:72653296-72653315 | Msa0520150:three_prime_UTR | 25.0% |
| !! | AGAGAAATTTGGTTTGGTAA+TGG | - | chr3_4:72650620-72650639 | None:intergenic | 30.0% |
| GGGATTAGATAGATAGATTA+GGG | - | chr3_4:72650709-72650728 | None:intergenic | 30.0% | |
| TGGGATTAGATAGATAGATT+AGG | - | chr3_4:72650710-72650729 | None:intergenic | 30.0% | |
| !!! | TCGATTTTGGAGCTTAATTT+TGG | - | chr3_4:72650785-72650804 | None:intergenic | 30.0% |
| !! | TGTGATGTGATAATCGATTT+TGG | - | chr3_4:72650798-72650817 | None:intergenic | 30.0% |
| AAATCTTACACCAAAACCAA+TGG | + | chr3_4:72650950-72650969 | Msa0520150:CDS | 30.0% | |
| ! | TTCAACAACATCAAAGGTTT+TGG | - | chr3_4:72651012-72651031 | None:intergenic | 30.0% |
| !! | TCGTAATAGCTTTGTTGTTT+GGG | + | chr3_4:72651070-72651089 | Msa0520150:CDS | 30.0% |
| ! | GAATTTTTGTGTTCATATGC+AGG | + | chr3_4:72651446-72651465 | Msa0520150:intron | 30.0% |
| AATTATCTACTATGGAAGCT+AGG | + | chr3_4:72651727-72651746 | Msa0520150:CDS | 30.0% | |
| GAGAATTTGCAAAATGATTC+TGG | + | chr3_4:72651903-72651922 | Msa0520150:CDS | 30.0% | |
| !! | AAAATGATTCTGGAGCTATA+AGG | + | chr3_4:72651913-72651932 | Msa0520150:CDS | 30.0% |
| !! | AAATGATTCTGGAGCTATAA+GGG | + | chr3_4:72651914-72651933 | Msa0520150:CDS | 30.0% |
| AAATTACTCTCATTACCACT+TGG | - | chr3_4:72652089-72652108 | None:intergenic | 30.0% | |
| ! | AAGTGGTAATGAGAGTAATT+TGG | + | chr3_4:72652088-72652107 | Msa0520150:CDS | 30.0% |
| ! | AGTGGTAATGAGAGTAATTT+GGG | + | chr3_4:72652089-72652108 | Msa0520150:CDS | 30.0% |
| AAAGAATGATAATTGGACTG+TGG | + | chr3_4:72652226-72652245 | Msa0520150:CDS | 30.0% | |
| !! | GTTTTGAACCTTAGTCAAAT+TGG | + | chr3_4:72652276-72652295 | Msa0520150:exon | 30.0% |
| TTCTACAACCAATTTGACTA+AGG | - | chr3_4:72652287-72652306 | None:intergenic | 30.0% | |
| AATAAAGGATACACATGTGA+TGG | - | chr3_4:72652486-72652505 | None:intergenic | 30.0% | |
| GGATAGAATAAGAAATGGTA+TGG | - | chr3_4:72652580-72652599 | None:intergenic | 30.0% | |
| ATGATTGAATGGGAAAAGTT+GGG | + | chr3_4:72652662-72652681 | Msa0520150:three_prime_UTR | 30.0% | |
| ACACTAAAAAAAAACTGTCG+CGG | - | chr3_4:72652769-72652788 | None:intergenic | 30.0% | |
| TTATCCTGCTCAAAGAAATT+TGG | - | chr3_4:72652875-72652894 | None:intergenic | 30.0% | |
| ! | CAGTTTACTTTCTTTGTTTC+TGG | + | chr3_4:72652978-72652997 | Msa0520150:three_prime_UTR | 30.0% |
| TGAGAGCTTACAATTGATTA+TGG | + | chr3_4:72653108-72653127 | Msa0520150:three_prime_UTR | 30.0% | |
| !!! | TTTTGCTGTTAGTTGAATGT+TGG | + | chr3_4:72653143-72653162 | Msa0520150:three_prime_UTR | 30.0% |
| TGTTAGTTGAATGTTGGATT+TGG | + | chr3_4:72653149-72653168 | Msa0520150:three_prime_UTR | 30.0% | |
| TGGAGCAACTTAATTTAAGG+CGG | - | chr3_4:72650676-72650695 | None:intergenic | 35.0% | |
| TAGATTAGGGAAGAGTGAAA+TGG | - | chr3_4:72650696-72650715 | None:intergenic | 35.0% | |
| !! | GGAAAGTTGGTAAGTATGAA+AGG | - | chr3_4:72650764-72650783 | None:intergenic | 35.0% |
| !! | GGAGCTTAATTTTGGAAAGT+TGG | - | chr3_4:72650777-72650796 | None:intergenic | 35.0% |
| AGCATCAACTAACTCAATGA+AGG | + | chr3_4:72650839-72650858 | Msa0520150:exon | 35.0% | |
| GCATCAACTAACTCAATGAA+GGG | + | chr3_4:72650840-72650859 | Msa0520150:exon | 35.0% | |
| TTAGCATATGTCAGTGTTGT+TGG | + | chr3_4:72650888-72650907 | Msa0520150:CDS | 35.0% | |
| TAACTCTTCATCTTCCTCTT+CGG | + | chr3_4:72650923-72650942 | Msa0520150:CDS | 35.0% | |
| !! | TCAAAGGTTTTGGTGAGAAA+TGG | - | chr3_4:72651002-72651021 | None:intergenic | 35.0% |
| TGGATCTTCAACAACATCAA+AGG | - | chr3_4:72651018-72651037 | None:intergenic | 35.0% | |
| !! | CTCGTAATAGCTTTGTTGTT+TGG | + | chr3_4:72651069-72651088 | Msa0520150:CDS | 35.0% |
| ! | TTACTGTGTTTGAAGTAACG+AGG | - | chr3_4:72651125-72651144 | None:intergenic | 35.0% |
| !!! | GGGTTTTAGAAAAGTTGATC+CGG | + | chr3_4:72651467-72651486 | Msa0520150:intron | 35.0% |
| TAATTCAATACAAGCACCAC+CGG | - | chr3_4:72651601-72651620 | None:intergenic | 35.0% | |
| GTGGTGCTTGTATTGAATTA+GGG | + | chr3_4:72651601-72651620 | Msa0520150:CDS | 35.0% | |
| TGGTGCTTGTATTGAATTAG+GGG | + | chr3_4:72651602-72651621 | Msa0520150:CDS | 35.0% | |
| TGTATTGAATTAGGGGAGTA+TGG | + | chr3_4:72651609-72651628 | Msa0520150:CDS | 35.0% | |
| TGGCTGAGATTGTGAAATTA+AGG | + | chr3_4:72651679-72651698 | Msa0520150:CDS | 35.0% | |
| AAGGGAGCAATTATCTACTA+TGG | + | chr3_4:72651719-72651738 | Msa0520150:CDS | 35.0% | |
| TAATCAACCACAGACTCAAT+TGG | - | chr3_4:72651945-72651964 | None:intergenic | 35.0% | |
| TGAATCAAGCAGTGAAGTTA+AGG | + | chr3_4:72652040-72652059 | Msa0520150:CDS | 35.0% | |
| CAGAACCTTGTTGATCAAAT+GGG | + | chr3_4:72652254-72652273 | Msa0520150:CDS | 35.0% | |
| CAAAACCCATTTGATCAACA+AGG | - | chr3_4:72652262-72652281 | None:intergenic | 35.0% | |
| ATAACAAAGTCATACCAGCA+AGG | - | chr3_4:72652344-72652363 | None:intergenic | 35.0% | |
| GATGATTGAATGGGAAAAGT+TGG | + | chr3_4:72652661-72652680 | Msa0520150:three_prime_UTR | 35.0% | |
| CACTAAAAAAAAACTGTCGC+GGG | - | chr3_4:72652768-72652787 | None:intergenic | 35.0% | |
| ATCCTCTTTGACAAGTCTAA+AGG | - | chr3_4:72652852-72652871 | None:intergenic | 35.0% | |
| TATGTTCTGTACATTGTTCG+CGG | + | chr3_4:72652917-72652936 | Msa0520150:three_prime_UTR | 35.0% | |
| !! | TGGTTGTTTTGTTAATCTCG+TGG | + | chr3_4:72652998-72653017 | Msa0520150:three_prime_UTR | 35.0% |
| !! | TTGTTTTGTTAATCTCGTGG+AGG | + | chr3_4:72653001-72653020 | Msa0520150:three_prime_UTR | 35.0% |
| ! | GGATATGGTTTTCATGGAAT+TGG | + | chr3_4:72653025-72653044 | Msa0520150:three_prime_UTR | 35.0% |
| !!! | GGAACTGCAGATTTATTTTG+AGG | + | chr3_4:72653231-72653250 | Msa0520150:three_prime_UTR | 35.0% |
| !!! | ACTGCAGATTTATTTTGAGG+TGG | + | chr3_4:72653234-72653253 | Msa0520150:three_prime_UTR | 35.0% |
| GGGTGAAGAGAAATTTGGTT+TGG | - | chr3_4:72650626-72650645 | None:intergenic | 40.0% | |
| ! | AGCAACTTAATTTAAGGCGG+TGG | - | chr3_4:72650673-72650692 | None:intergenic | 40.0% |
| GAAGGGAATTAGAGTGAAAG+AGG | + | chr3_4:72650857-72650876 | Msa0520150:CDS | 40.0% | |
| AACTCTTCATCTTCCTCTTC+GGG | + | chr3_4:72650924-72650943 | Msa0520150:CDS | 40.0% | |
| TGTAAGATTTGAACCCGAAG+AGG | - | chr3_4:72650940-72650959 | None:intergenic | 40.0% | |
| CTTACACCAAAACCAATGGA+AGG | + | chr3_4:72650954-72650973 | Msa0520150:CDS | 40.0% | |
| !!! | TGCAATCCTTCCATTGGTTT+TGG | - | chr3_4:72650963-72650982 | None:intergenic | 40.0% |
| ATTTCGTGCAATCCTTCCAT+TGG | - | chr3_4:72650969-72650988 | None:intergenic | 40.0% | |
| AATGGAAGGATTGCACGAAA+TGG | + | chr3_4:72650968-72650987 | Msa0520150:CDS | 40.0% | |
| ATGGAAGGATTGCACGAAAT+GGG | + | chr3_4:72650969-72650988 | Msa0520150:CDS | 40.0% | |
| !! | AAGGTTTTGGTGAGAAATGG+AGG | - | chr3_4:72650999-72651018 | None:intergenic | 40.0% |
| GAAACAATGGAATCAGTGGA+TGG | - | chr3_4:72651038-72651057 | None:intergenic | 40.0% | |
| CCATGAAACAATGGAATCAG+TGG | - | chr3_4:72651042-72651061 | None:intergenic | 40.0% | |
| !! | CCACTGATTCCATTGTTTCA+TGG | + | chr3_4:72651039-72651058 | Msa0520150:CDS | 40.0% |
| GATTCCATTGTTTCATGGAG+CGG | + | chr3_4:72651044-72651063 | Msa0520150:CDS | 40.0% | |
| GTAACGAGGTAAAATAGCAG+TGG | - | chr3_4:72651111-72651130 | None:intergenic | 40.0% | |
| ! | AAAAGTTGATCCGGATCGAT+GGG | + | chr3_4:72651476-72651495 | Msa0520150:CDS | 40.0% |
| GGTGGTGCTTGTATTGAATT+AGG | + | chr3_4:72651600-72651619 | Msa0520150:CDS | 40.0% | |
| TGAGATTGAGAGGTTGAGAA+GGG | + | chr3_4:72651641-72651660 | Msa0520150:CDS | 40.0% | |
| !!! | AAGGGACAGGGTTGTTTTAA+TGG | + | chr3_4:72651659-72651678 | Msa0520150:CDS | 40.0% |
| GCACAGAATAGAGAGTTGAA+AGG | + | chr3_4:72651834-72651853 | Msa0520150:CDS | 40.0% | |
| GCGTTGAAATGAAGCGAAAA+CGG | + | chr3_4:72651856-72651875 | Msa0520150:CDS | 40.0% | |
| TTGAAATGAAGCGAAAACGG+AGG | + | chr3_4:72651859-72651878 | Msa0520150:CDS | 40.0% | |
| GACTACTATTGAGTCTGAGA+TGG | + | chr3_4:72651992-72652011 | Msa0520150:CDS | 40.0% | |
| TCATTGAGTTCAGTTCCAAG+TGG | + | chr3_4:72652071-72652090 | Msa0520150:CDS | 40.0% | |
| TAATTTGGGTGATGCTGTGT+GGG | + | chr3_4:72652103-72652122 | Msa0520150:CDS | 40.0% | |
| GGATTTACTGAACCAAGAGT+TGG | + | chr3_4:72652127-72652146 | Msa0520150:CDS | 40.0% | |
| ! | TTACTGAACCAAGAGTTGGT+TGG | + | chr3_4:72652131-72652150 | Msa0520150:CDS | 40.0% |
| CCAATCACAACTTCATCATC+TGG | - | chr3_4:72652164-72652183 | None:intergenic | 40.0% | |
| CCAGATGATGAAGTTGTGAT+TGG | + | chr3_4:72652161-72652180 | Msa0520150:CDS | 40.0% | |
| ! | TTTTCTACCAAATCCTCCAC+GGG | - | chr3_4:72652209-72652228 | None:intergenic | 40.0% |
| ! | CTTTTCTACCAAATCCTCCA+CGG | - | chr3_4:72652210-72652229 | None:intergenic | 40.0% |
| GCAGAACCTTGTTGATCAAA+TGG | + | chr3_4:72652253-72652272 | Msa0520150:CDS | 40.0% | |
| ATGATGTGTTGCACGCAATT+TGG | - | chr3_4:72652715-72652734 | None:intergenic | 40.0% | |
| ! | TCATCCGATTCTGTTCCTTT+TGG | + | chr3_4:72652788-72652807 | Msa0520150:three_prime_UTR | 40.0% |
| ! | CATCCGATTCTGTTCCTTTT+GGG | + | chr3_4:72652789-72652808 | Msa0520150:three_prime_UTR | 40.0% |
| GTTCCCAAAAGGAACAGAAT+CGG | - | chr3_4:72652795-72652814 | None:intergenic | 40.0% | |
| CAGAGATAACAGTTCCCAAA+AGG | - | chr3_4:72652806-72652825 | None:intergenic | 40.0% | |
| !! | CTTTTGGGAACTGTTATCTC+TGG | + | chr3_4:72652804-72652823 | Msa0520150:three_prime_UTR | 40.0% |
| CTCCTTTAGACTTGTCAAAG+AGG | + | chr3_4:72652847-72652866 | Msa0520150:three_prime_UTR | 40.0% | |
| GGATCCAAATTTCTTTGAGC+AGG | + | chr3_4:72652868-72652887 | Msa0520150:three_prime_UTR | 40.0% | |
| ATGTTCTGTACATTGTTCGC+GGG | + | chr3_4:72652918-72652937 | Msa0520150:three_prime_UTR | 40.0% | |
| ! | TTTTGTTAATCTCGTGGAGG+AGG | + | chr3_4:72653004-72653023 | Msa0520150:three_prime_UTR | 40.0% |
| ! | CATTGTGAATTGAGTGTTGC+TGG | + | chr3_4:72653257-72653276 | Msa0520150:three_prime_UTR | 40.0% |
| ! | GGTGTTTTCCTCTTGTAAAC+AGG | + | chr3_4:72653336-72653355 | Msa0520150:three_prime_UTR | 40.0% |
| GAGACGGGTGAAGAGAAATT+TGG | - | chr3_4:72650631-72650650 | None:intergenic | 45.0% | |
| !! | AGTAGGAAGGTTCTAGAGAC+GGG | - | chr3_4:72650646-72650665 | None:intergenic | 45.0% |
| !! | GAGTAGGAAGGTTCTAGAGA+CGG | - | chr3_4:72650647-72650666 | None:intergenic | 45.0% |
| ! | TTTAAGGCGGTGGATAGAGT+AGG | - | chr3_4:72650663-72650682 | None:intergenic | 45.0% |
| !! | GTTTTGGTGAGAAATGGAGG+TGG | - | chr3_4:72650996-72651015 | None:intergenic | 45.0% |
| GCAGATACATGGACATTGTC+TGG | - | chr3_4:72651360-72651379 | None:intergenic | 45.0% | |
| ACAAACAGCGTGCAGATACA+TGG | - | chr3_4:72651371-72651390 | None:intergenic | 45.0% | |
| ! | GAAAAGTTGATCCGGATCGA+TGG | + | chr3_4:72651475-72651494 | Msa0520150:CDS | 45.0% |
| !!! | CGAACGAAGGGTTTTTAGCT+GGG | + | chr3_4:72651505-72651524 | Msa0520150:CDS | 45.0% |
| ! | TTAGGGGAGTATGGTCTTGA+AGG | + | chr3_4:72651618-72651637 | Msa0520150:CDS | 45.0% |
| GTCTTGAAGGTGAGATTGAG+AGG | + | chr3_4:72651631-72651650 | Msa0520150:CDS | 45.0% | |
| GTGAGATTGAGAGGTTGAGA+AGG | + | chr3_4:72651640-72651659 | Msa0520150:CDS | 45.0% | |
| AACCACAGACTCAATTGGCA+CGG | - | chr3_4:72651940-72651959 | None:intergenic | 45.0% | |
| TCTTGTCAAGAGCAGCAAGA+GGG | + | chr3_4:72651966-72651985 | Msa0520150:CDS | 45.0% | |
| GTAATTTGGGTGATGCTGTG+TGG | + | chr3_4:72652102-72652121 | Msa0520150:CDS | 45.0% | |
| ! | TGAACCAAGAGTTGGTTGGT+GGG | + | chr3_4:72652135-72652154 | Msa0520150:CDS | 45.0% |
| !! | TGAATGGCTTTGTATGCAGC+AGG | + | chr3_4:72652438-72652457 | Msa0520150:intron | 45.0% |
| !! | GAATGGCTTTGTATGCAGCA+GGG | + | chr3_4:72652439-72652458 | Msa0520150:intron | 45.0% |
| GGATGATTGTACTGCAGAAG+AGG | + | chr3_4:72652460-72652479 | Msa0520150:three_prime_UTR | 45.0% | |
| CGTGCAACACATCATTCGTT+AGG | + | chr3_4:72652720-72652739 | Msa0520150:three_prime_UTR | 45.0% | |
| !! | GGTATCTGGGTTTTGTGGAA+TGG | - | chr3_4:72652747-72652766 | None:intergenic | 45.0% |
| AAAAACTGTCGCGGGTATCT+GGG | - | chr3_4:72652760-72652779 | None:intergenic | 45.0% | |
| AAAAAACTGTCGCGGGTATC+TGG | - | chr3_4:72652761-72652780 | None:intergenic | 45.0% | |
| TAATCTCGTGGAGGAGGATA+TGG | + | chr3_4:72653010-72653029 | Msa0520150:three_prime_UTR | 45.0% | |
| ! | GGAGGAGGATATGGTTTTCA+TGG | + | chr3_4:72653019-72653038 | Msa0520150:three_prime_UTR | 45.0% |
| ! | TGTGAATTGAGTGTTGCTGG+TGG | + | chr3_4:72653260-72653279 | Msa0520150:three_prime_UTR | 45.0% |
| AGCTCCGCTCCATGAAACAA+TGG | - | chr3_4:72651051-72651070 | None:intergenic | 50.0% | |
| TTCGCAAACTCCCATCGATC+CGG | - | chr3_4:72651489-72651508 | None:intergenic | 50.0% | |
| GATGGGAGTTTGCGAACGAA+GGG | + | chr3_4:72651493-72651512 | Msa0520150:CDS | 50.0% | |
| !!! | GCGAACGAAGGGTTTTTAGC+TGG | + | chr3_4:72651504-72651523 | Msa0520150:CDS | 50.0% |
| !!! | AAGGGTTTTTAGCTGGGCAG+AGG | + | chr3_4:72651511-72651530 | Msa0520150:CDS | 50.0% |
| CAAGCTATGCAGCAAGAGAC+CGG | + | chr3_4:72651579-72651598 | Msa0520150:CDS | 50.0% | |
| TTGAGAGGTTGAGAAGGGAC+AGG | + | chr3_4:72651646-72651665 | Msa0520150:CDS | 50.0% | |
| TGAGAGGTTGAGAAGGGACA+GGG | + | chr3_4:72651647-72651666 | Msa0520150:CDS | 50.0% | |
| GCAGCAGCAGCATAGTTCAA+GGG | + | chr3_4:72651701-72651720 | Msa0520150:CDS | 50.0% | |
| ! | GCTCACTGCTAGTTCGAGTT+TGG | + | chr3_4:72651881-72651900 | Msa0520150:CDS | 50.0% |
| CTCTTGTCAAGAGCAGCAAG+AGG | + | chr3_4:72651965-72651984 | Msa0520150:CDS | 50.0% | |
| ! | CTGAACCAAGAGTTGGTTGG+TGG | + | chr3_4:72652134-72652153 | Msa0520150:CDS | 50.0% |
| GATTCCCACCAACCAACTCT+TGG | - | chr3_4:72652142-72652161 | None:intergenic | 50.0% | |
| CTCTCAAATTGATGTGCCCG+TGG | + | chr3_4:72652190-72652209 | Msa0520150:CDS | 50.0% | |
| TCAAATTGATGTGCCCGTGG+AGG | + | chr3_4:72652193-72652212 | Msa0520150:CDS | 50.0% | |
| ! | TCACTTGAGTTGCACCTTGC+TGG | + | chr3_4:72652327-72652346 | Msa0520150:three_prime_UTR | 50.0% |
| AGGGTCTCATTGTTGTGTGC+TGG | + | chr3_4:72653315-72653334 | Msa0520150:three_prime_UTR | 50.0% | |
| AGGCGGTGGATAGAGTAGGA+AGG | - | chr3_4:72650659-72650678 | None:intergenic | 55.0% | |
| CGATGGGAGTTTGCGAACGA+AGG | + | chr3_4:72651492-72651511 | Msa0520150:CDS | 55.0% | |
| GGCAGCAGCAGCATAGTTCA+AGG | + | chr3_4:72651700-72651719 | Msa0520150:CDS | 55.0% | |
| TTTGGGTGATGCTGTGTGGG+AGG | + | chr3_4:72652106-72652125 | Msa0520150:CDS | 55.0% | |
| TGATGTGCCCGTGGAGGATT+TGG | + | chr3_4:72652199-72652218 | Msa0520150:CDS | 55.0% | |
| ! | TCGCGGGTATCTGGGTTTTG+TGG | - | chr3_4:72652752-72652771 | None:intergenic | 55.0% |
| CATTGTTCGCGGGTCAGTCT+AGG | + | chr3_4:72652928-72652947 | Msa0520150:three_prime_UTR | 55.0% | |
| GCTATGCAGCAAGAGACCGG+TGG | + | chr3_4:72651582-72651601 | Msa0520150:CDS | 60.0% | |
| GGCCGTGCCAATTGAGTCTG+TGG | + | chr3_4:72651935-72651954 | Msa0520150:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 72650607 | 72653359 | 72650607 | ID=Msa0520150;Name=Msa0520150 |
| chr3_4 | mRNA | 72650607 | 72653359 | 72650607 | ID=Msa0520150-mRNA-1;Parent=Msa0520150;Name=Msa0520150-mRNA-1;_AED=0.00;_eAED=0.00;_QI=248|1|1|1|0.5|0.33|3|962|381 |
| chr3_4 | exon | 72650607 | 72651178 | 72650607 | ID=Msa0520150-mRNA-1:exon:20101;Parent=Msa0520150-mRNA-1 |
| chr3_4 | exon | 72651468 | 72652348 | 72651468 | ID=Msa0520150-mRNA-1:exon:20102;Parent=Msa0520150-mRNA-1 |
| chr3_4 | exon | 72652457 | 72653359 | 72652457 | ID=Msa0520150-mRNA-1:exon:20103;Parent=Msa0520150-mRNA-1 |
| chr3_4 | five_prime_UTR | 72650607 | 72650854 | 72650607 | ID=Msa0520150-mRNA-1:five_prime_utr;Parent=Msa0520150-mRNA-1 |
| chr3_4 | CDS | 72650855 | 72651178 | 72650855 | ID=Msa0520150-mRNA-1:cds;Parent=Msa0520150-mRNA-1 |
| chr3_4 | CDS | 72651468 | 72652289 | 72651468 | ID=Msa0520150-mRNA-1:cds;Parent=Msa0520150-mRNA-1 |
| chr3_4 | three_prime_UTR | 72652290 | 72652348 | 72652290 | ID=Msa0520150-mRNA-1:three_prime_utr;Parent=Msa0520150-mRNA-1 |
| chr3_4 | three_prime_UTR | 72652457 | 72653359 | 72652457 | ID=Msa0520150-mRNA-1:three_prime_utr;Parent=Msa0520150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
