AlfalfaGEDB | Msa0520150

M. sativa cultivar zhongmu-4 / Msa0520150

KEGG: K09419
GO: GO:0000302 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0006986 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00447.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0520150	XP_039687742.1	93.963	381	20	1	1	381	1	378	0.0	721

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0520150	sp\|O80982\|HSFA2_ARATH	51.695	354	117	8	36	379	31	340	2.68e-118	350

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0520150	G7J7P1	93.963	381	20	1	1	381	1	378	0.0	721

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TFs/TRs:

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Gene ID	Type	Classification
Msa0520150	TF	HSF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0520150	MtrunA17_Chr3g0135831	93.963	381	20	1	1	381	1	378	0.0	721
Msa0520150	MtrunA17_Chr7g0260331	55.731	253	104	2	8	252	8	260	5.31e-92	280
Msa0520150	MtrunA17_Chr1g0204741	62.037	216	75	4	36	246	27	240	5.61e-90	274
Msa0520150	MtrunA17_Chr5g0410881	55.804	224	83	4	36	247	21	240	3.13e-81	257
Msa0520150	MtrunA17_Chr4g0071051	40.970	371	175	11	24	376	76	420	1.29e-78	248
Msa0520150	MtrunA17_Chr4g0039891	55.288	208	85	2	48	247	11	218	9.67e-74	237
Msa0520150	MtrunA17_Chr1g0185131	43.564	303	145	8	36	331	19	302	6.37e-72	228
Msa0520150	MtrunA17_Chr6g0485571	44.279	201	108	2	49	249	11	207	3.32e-51	174
Msa0520150	MtrunA17_Chr8g0392001	46.392	194	97	2	49	235	22	215	6.92e-49	169
Msa0520150	MtrunA17_Chr8g0379701	42.326	215	106	3	48	255	11	214	9.20e-49	169

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0520150	AT2G26150.1	51.695	354	117	8	36	379	31	340	2.72e-119	350
Msa0520150	AT2G26150.4	51.695	354	117	8	36	379	31	340	2.72e-119	350
Msa0520150	AT3G22830.1	44.538	357	157	8	36	359	48	396	2.73e-89	275
Msa0520150	AT3G51910.1	54.911	224	80	3	39	256	19	227	4.28e-76	237
Msa0520150	AT4G17750.1	51.570	223	91	2	47	252	50	272	5.65e-76	243
Msa0520150	AT1G32330.2	47.653	277	120	7	15	274	3	271	1.42e-75	242
Msa0520150	AT1G32330.1	47.653	277	120	7	15	274	3	271	1.45e-75	242
Msa0520150	AT5G16820.1	50.655	229	97	3	27	244	10	233	4.48e-75	241
Msa0520150	AT5G16820.2	50.655	229	97	3	27	244	10	233	4.48e-75	241
Msa0520150	AT3G02990.1	53.589	209	86	3	48	247	22	228	1.45e-73	236

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Find 136 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGATCCGGATCGAT+GGG	0.538609	3_4:+72651476	Msa0520150:CDS
AAAATGATTCTGGAGCTATA+AGG	0.397500	3_4:+72651913	Msa0520150:CDS
AAAGAATGATAATTGGACTG+TGG	0.619356	3_4:+72652226	Msa0520150:CDS
AAATCTTACACCAAAACCAA+TGG	0.575232	3_4:+72650950	Msa0520150:CDS
AAATGATTCTGGAGCTATAA+GGG	0.444673	3_4:+72651914	Msa0520150:CDS
AAATGGAGCAACTTAATTTA+AGG	0.257017	3_4:-72650676	None:intergenic
AAATTACTCTCATTACCACT+TGG	0.571022	3_4:-72652086	None:intergenic
AACCACAGACTCAATTGGCA+CGG	0.620284	3_4:-72651937	None:intergenic
AACTCTTCATCTTCCTCTTC+GGG	0.307939	3_4:+72650924	Msa0520150:CDS
AAGGGAGCAATTATCTACTA+TGG	0.429852	3_4:+72651719	Msa0520150:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGGATTAGATAGATAGATTA+GGG	-	chr3_4:72650709-72650728	None:intergenic	30.0%
TGGGATTAGATAGATAGATT+AGG	-	chr3_4:72650710-72650729	None:intergenic	30.0%
AAATCTTACACCAAAACCAA+TGG	+	chr3_4:72650950-72650969	Msa0520150:CDS	30.0%
AATTATCTACTATGGAAGCT+AGG	+	chr3_4:72651727-72651746	Msa0520150:CDS	30.0%
GAGAATTTGCAAAATGATTC+TGG	+	chr3_4:72651903-72651922	Msa0520150:CDS	30.0%
AAATTACTCTCATTACCACT+TGG	-	chr3_4:72652089-72652108	None:intergenic	30.0%
AAAGAATGATAATTGGACTG+TGG	+	chr3_4:72652226-72652245	Msa0520150:CDS	30.0%
TTCTACAACCAATTTGACTA+AGG	-	chr3_4:72652287-72652306	None:intergenic	30.0%
AATAAAGGATACACATGTGA+TGG	-	chr3_4:72652486-72652505	None:intergenic	30.0%
GGATAGAATAAGAAATGGTA+TGG	-	chr3_4:72652580-72652599	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	72650607	72653359	72650607	ID=Msa0520150;Name=Msa0520150
chr3_4	mRNA	72650607	72653359	72650607	ID=Msa0520150-mRNA-1;Parent=Msa0520150;Name=Msa0520150-mRNA-1;_AED=0.00;_eAED=0.00;_QI=248\|1\|1\|1\|0.5\|0.33\|3\|962\|381
chr3_4	exon	72650607	72651178	72650607	ID=Msa0520150-mRNA-1:exon:20101;Parent=Msa0520150-mRNA-1
chr3_4	exon	72651468	72652348	72651468	ID=Msa0520150-mRNA-1:exon:20102;Parent=Msa0520150-mRNA-1
chr3_4	exon	72652457	72653359	72652457	ID=Msa0520150-mRNA-1:exon:20103;Parent=Msa0520150-mRNA-1
chr3_4	five_prime_UTR	72650607	72650854	72650607	ID=Msa0520150-mRNA-1:five_prime_utr;Parent=Msa0520150-mRNA-1
chr3_4	CDS	72650855	72651178	72650855	ID=Msa0520150-mRNA-1:cds;Parent=Msa0520150-mRNA-1
chr3_4	CDS	72651468	72652289	72651468	ID=Msa0520150-mRNA-1:cds;Parent=Msa0520150-mRNA-1
chr3_4	three_prime_UTR	72652290	72652348	72652290	ID=Msa0520150-mRNA-1:three_prime_utr;Parent=Msa0520150-mRNA-1
chr3_4	three_prime_UTR	72652457	72653359	72652457	ID=Msa0520150-mRNA-1:three_prime_utr;Parent=Msa0520150-mRNA-1

Gene Sequence

>Msa0520150

ATGAAGGGAATTAGAGTGAAAGAGGAAGAAACATTAGCATATGTCAGTGTTGTTGGTTCAACATCATGTAACTCTTCATCTTCCTCTTCGGGTTCAAATCTTACACCAAAACCAATGGAAGGATTGCACGAAATGGGTCCACCTCCATTTCTCACCAAAACCTTTGATGTTGTTGAAGATCCATCCACTGATTCCATTGTTTCATGGAGCGGAGCTCGTAATAGCTTTGTTGTTTGGGATCTTCACAAATTCTCCACTGCTATTTTACCTCGTTACTTCAAACACAGTAATTTCTCTAGCTTCGTTCGACAACTCAATACCTATGGTTTTAGAAAAGTTGATCCGGATCGATGGGAGTTTGCGAACGAAGGGTTTTTAGCTGGGCAGAGGAACTTGTTGAAAACAATCAAGAGAAGAAGAAATGTGACACAATCACAAGCTATGCAGCAAGAGACCGGTGGTGCTTGTATTGAATTAGGGGAGTATGGTCTTGAAGGTGAGATTGAGAGGTTGAGAAGGGACAGGGTTGTTTTAATGGCTGAGATTGTGAAATTAAGGCAGCAGCAGCATAGTTCAAGGGAGCAATTATCTACTATGGAAGCTAGGTTGTTGATTACTGAGAAGAAACATCAACAGATGATGAATTTTCTTGCAAAAGCACTTAGCAATCAATCTTTTATACAACAATTGGCACAGAATAGAGAGTTGAAAGGCGTTGAAATGAAGCGAAAACGGAGGCTCACTGCTAGTTCGAGTTTGGAGAATTTGCAAAATGATTCTGGAGCTATAAGGGCCGTGCCAATTGAGTCTGTGGTTGATTACTCTTGTCAAGAGCAGCAAGAGGGTTTGACTACTATTGAGTCTGAGATGGAGACACTGTTAAGTGCTTATGATAATGAATCAAGCAGTGAAGTTAAGGACTGCAGTTCATTGAGTTCAGTTCCAAGTGGTAATGAGAGTAATTTGGGTGATGCTGTGTGGGAGGATTTACTGAACCAAGAGTTGGTTGGTGGGAATCCAGATGATGAAGTTGTGATTGGTGATTTCTCTCAAATTGATGTGCCCGTGGAGGATTTGGTAGAAAAGAATGATAATTGGACTGTGGATTTGCAGAACCTTGTTGATCAAATGGGTTTTGAACCTTAG

Protein sequence

>Msa0520150

MKGIRVKEEETLAYVSVVGSTSCNSSSSSSGSNLTPKPMEGLHEMGPPPFLTKTFDVVEDPSTDSIVSWSGARNSFVVWDLHKFSTAILPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQRNLLKTIKRRRNVTQSQAMQQETGGACIELGEYGLEGEIERLRRDRVVLMAEIVKLRQQQHSSREQLSTMEARLLITEKKHQQMMNFLAKALSNQSFIQQLAQNRELKGVEMKRKRRLTASSSLENLQNDSGAIRAVPIESVVDYSCQEQQEGLTTIESEMETLLSAYDNESSSEVKDCSSLSSVPSGNESNLGDAVWEDLLNQELVGGNPDDEVVIGDFSQIDVPVEDLVEKNDNWTVDLQNLVDQMGFEP*