Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520370 | XP_039685680.1 | 80.225 | 799 | 107 | 5 | 1 | 748 | 1 | 799 | 0.0 | 1293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520370 | sp|Q9SZL8|FRS5_ARATH | 27.031 | 640 | 358 | 16 | 32 | 634 | 70 | 637 | 1.32e-57 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520370 | D3YBB9 | 71.995 | 807 | 178 | 6 | 1 | 767 | 49 | 847 | 0.0 | 1187 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0520370 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520370 | MtrunA17_Chr3g0088371 | 82.609 | 184 | 29 | 1 | 587 | 767 | 1 | 184 | 8.65e-103 | 314 |
| Msa0520370 | MtrunA17_Chr3g0082121 | 30.352 | 682 | 374 | 16 | 41 | 696 | 49 | 655 | 3.56e-87 | 290 |
| Msa0520370 | MtrunA17_Chr2g0324011 | 28.661 | 635 | 346 | 14 | 36 | 634 | 8 | 571 | 4.78e-82 | 273 |
| Msa0520370 | MtrunA17_Chr1g0202341 | 26.929 | 635 | 352 | 18 | 34 | 631 | 50 | 609 | 3.59e-62 | 221 |
| Msa0520370 | MtrunA17_Chr8g0363841 | 27.186 | 629 | 354 | 15 | 40 | 634 | 22 | 580 | 2.73e-61 | 219 |
| Msa0520370 | MtrunA17_Chr1g0203721 | 25.926 | 783 | 418 | 26 | 1 | 708 | 16 | 711 | 6.84e-59 | 215 |
| Msa0520370 | MtrunA17_Chr5g0448761 | 24.929 | 706 | 422 | 15 | 31 | 697 | 56 | 692 | 1.15e-58 | 213 |
| Msa0520370 | MtrunA17_Chr6g0458391 | 26.904 | 617 | 343 | 18 | 41 | 631 | 231 | 765 | 2.59e-56 | 206 |
| Msa0520370 | MtrunA17_Chr2g0296781 | 26.215 | 679 | 384 | 22 | 39 | 677 | 1 | 602 | 2.27e-55 | 203 |
| Msa0520370 | MtrunA17_Chr1g0172971 | 81.197 | 117 | 21 | 1 | 1 | 116 | 1 | 117 | 1.26e-53 | 194 |
| Msa0520370 | MtrunA17_Chr6g0477261 | 29.621 | 449 | 258 | 14 | 227 | 668 | 85 | 482 | 5.85e-52 | 192 |
| Msa0520370 | MtrunA17_Chr2g0287651 | 25.357 | 631 | 356 | 16 | 39 | 631 | 79 | 632 | 5.66e-51 | 192 |
| Msa0520370 | MtrunA17_Chr5g0441581 | 24.439 | 757 | 433 | 23 | 32 | 742 | 26 | 689 | 7.15e-50 | 186 |
| Msa0520370 | MtrunA17_Chr1g0164591 | 32.476 | 311 | 182 | 5 | 131 | 417 | 1 | 307 | 1.47e-49 | 177 |
| Msa0520370 | MtrunA17_Chr1g0198761 | 26.656 | 649 | 355 | 18 | 26 | 629 | 38 | 610 | 3.96e-47 | 179 |
| Msa0520370 | MtrunA17_Chr3g0080351 | 24.501 | 702 | 441 | 18 | 34 | 721 | 75 | 701 | 5.16e-47 | 179 |
| Msa0520370 | MtrunA17_Chr5g0440451 | 26.907 | 472 | 285 | 10 | 224 | 690 | 246 | 662 | 1.48e-46 | 179 |
| Msa0520370 | MtrunA17_Chr2g0329031 | 24.765 | 638 | 365 | 19 | 23 | 627 | 2 | 557 | 7.21e-46 | 175 |
| Msa0520370 | MtrunA17_Chr1g0207551 | 24.148 | 704 | 395 | 21 | 31 | 687 | 30 | 641 | 1.42e-45 | 175 |
| Msa0520370 | MtrunA17_Chr3g0118611 | 27.292 | 469 | 281 | 10 | 224 | 688 | 145 | 557 | 2.94e-45 | 174 |
| Msa0520370 | MtrunA17_Chr1g0196541 | 23.802 | 626 | 374 | 16 | 39 | 631 | 1 | 556 | 3.06e-44 | 170 |
| Msa0520370 | MtrunA17_Chr1g0203051 | 22.987 | 596 | 347 | 11 | 50 | 606 | 94 | 616 | 6.10e-42 | 162 |
| Msa0520370 | MtrunA17_Chr2g0287061 | 23.520 | 625 | 338 | 18 | 41 | 634 | 189 | 704 | 4.84e-40 | 158 |
| Msa0520370 | MtrunA17_Chr5g0448511 | 25.561 | 446 | 268 | 10 | 198 | 634 | 10 | 400 | 7.69e-40 | 155 |
| Msa0520370 | MtrunA17_Chr2g0290391 | 24.805 | 641 | 350 | 19 | 38 | 629 | 54 | 611 | 1.08e-37 | 150 |
| Msa0520370 | MtrunA17_Chr5g0431001 | 27.556 | 450 | 252 | 12 | 40 | 442 | 66 | 488 | 7.01e-37 | 145 |
| Msa0520370 | MtrunA17_Chr2g0276841 | 24.763 | 634 | 352 | 21 | 49 | 638 | 84 | 636 | 8.37e-37 | 147 |
| Msa0520370 | MtrunA17_Chr2g0291581 | 23.177 | 617 | 382 | 16 | 38 | 631 | 74 | 621 | 6.42e-35 | 142 |
| Msa0520370 | MtrunA17_Chr7g0258861 | 32.680 | 306 | 151 | 9 | 36 | 305 | 8 | 294 | 6.46e-35 | 135 |
| Msa0520370 | MtrunA17_Chr2g0291591 | 25.309 | 486 | 302 | 13 | 16 | 468 | 44 | 501 | 3.65e-34 | 138 |
| Msa0520370 | MtrunA17_Chr2g0294841 | 25.800 | 500 | 293 | 15 | 3 | 451 | 7 | 479 | 1.42e-29 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520370 | AT4G38180.1 | 27.031 | 640 | 358 | 16 | 32 | 634 | 70 | 637 | 1.34e-58 | 213 |
| Msa0520370 | AT4G15090.1 | 26.939 | 490 | 292 | 9 | 224 | 710 | 252 | 678 | 1.19e-51 | 194 |
| Msa0520370 | AT4G15090.5 | 26.939 | 490 | 292 | 9 | 224 | 710 | 252 | 678 | 1.19e-51 | 194 |
| Msa0520370 | AT4G15090.3 | 26.939 | 490 | 292 | 9 | 224 | 710 | 252 | 678 | 1.19e-51 | 194 |
| Msa0520370 | AT4G15090.2 | 26.939 | 490 | 292 | 9 | 224 | 710 | 252 | 678 | 1.19e-51 | 194 |
| Msa0520370 | AT4G15090.4 | 26.939 | 490 | 292 | 9 | 224 | 710 | 252 | 678 | 1.19e-51 | 194 |
| Msa0520370 | AT1G76320.3 | 24.179 | 670 | 395 | 18 | 50 | 689 | 12 | 598 | 3.67e-45 | 172 |
| Msa0520370 | AT2G27110.3 | 27.195 | 467 | 283 | 11 | 224 | 688 | 78 | 489 | 3.73e-45 | 173 |
| Msa0520370 | AT3G22170.2 | 22.969 | 714 | 434 | 19 | 34 | 722 | 69 | 691 | 5.06e-45 | 174 |
| Msa0520370 | AT3G22170.1 | 22.969 | 714 | 434 | 19 | 34 | 722 | 69 | 691 | 5.06e-45 | 174 |
| Msa0520370 | AT2G27110.2 | 27.137 | 468 | 284 | 11 | 224 | 689 | 223 | 635 | 7.19e-45 | 174 |
| Msa0520370 | AT2G27110.1 | 27.137 | 468 | 284 | 11 | 224 | 689 | 223 | 635 | 7.19e-45 | 174 |
| Msa0520370 | AT1G76320.1 | 24.179 | 670 | 395 | 18 | 50 | 689 | 12 | 598 | 9.54e-45 | 172 |
| Msa0520370 | AT1G76320.4 | 24.179 | 670 | 395 | 18 | 50 | 689 | 12 | 598 | 9.54e-45 | 172 |
| Msa0520370 | AT1G76320.2 | 24.179 | 670 | 395 | 18 | 50 | 689 | 12 | 598 | 9.83e-45 | 172 |
| Msa0520370 | AT3G06250.2 | 24.715 | 615 | 345 | 17 | 34 | 630 | 189 | 703 | 2.25e-43 | 168 |
| Msa0520370 | AT3G06250.1 | 24.715 | 615 | 345 | 17 | 34 | 630 | 189 | 703 | 2.25e-43 | 168 |
| Msa0520370 | AT3G06250.3 | 24.715 | 615 | 345 | 17 | 34 | 630 | 189 | 703 | 2.25e-43 | 168 |
| Msa0520370 | AT4G38170.1 | 24.331 | 411 | 257 | 7 | 224 | 631 | 40 | 399 | 2.37e-41 | 159 |
| Msa0520370 | AT5G18960.2 | 27.714 | 433 | 243 | 11 | 202 | 630 | 361 | 727 | 8.04e-39 | 155 |
| Msa0520370 | AT5G18960.1 | 27.714 | 433 | 243 | 11 | 202 | 630 | 361 | 727 | 8.04e-39 | 155 |
| Msa0520370 | AT2G32250.5 | 24.549 | 721 | 424 | 22 | 4 | 712 | 10 | 622 | 4.51e-38 | 152 |
| Msa0520370 | AT2G32250.2 | 24.549 | 721 | 424 | 22 | 4 | 712 | 10 | 622 | 8.27e-38 | 152 |
| Msa0520370 | AT2G32250.4 | 24.549 | 721 | 424 | 22 | 4 | 712 | 10 | 622 | 8.27e-38 | 152 |
| Msa0520370 | AT2G32250.6 | 24.549 | 721 | 424 | 22 | 4 | 712 | 10 | 622 | 8.48e-38 | 152 |
| Msa0520370 | AT2G32250.1 | 24.549 | 721 | 424 | 22 | 4 | 712 | 10 | 622 | 8.48e-38 | 152 |
| Msa0520370 | AT2G32250.3 | 24.549 | 721 | 424 | 22 | 4 | 712 | 10 | 622 | 8.48e-38 | 152 |
| Msa0520370 | AT2G32250.7 | 24.451 | 683 | 401 | 19 | 41 | 712 | 3 | 581 | 4.71e-37 | 149 |
| Msa0520370 | AT2G32250.8 | 24.451 | 683 | 401 | 19 | 41 | 712 | 3 | 581 | 5.30e-37 | 149 |
| Msa0520370 | AT4G19990.5 | 25.262 | 669 | 401 | 21 | 41 | 690 | 27 | 615 | 1.10e-36 | 148 |
| Msa0520370 | AT4G19990.1 | 27.542 | 472 | 282 | 11 | 224 | 690 | 142 | 558 | 2.03e-36 | 147 |
| Msa0520370 | AT1G10240.2 | 23.955 | 622 | 352 | 18 | 49 | 628 | 62 | 604 | 6.38e-36 | 145 |
| Msa0520370 | AT1G10240.1 | 23.955 | 622 | 352 | 18 | 49 | 628 | 62 | 604 | 6.38e-36 | 145 |
| Msa0520370 | AT5G28530.1 | 23.631 | 639 | 360 | 18 | 40 | 629 | 60 | 619 | 2.55e-35 | 143 |
| Msa0520370 | AT5G28530.3 | 23.474 | 639 | 357 | 19 | 40 | 629 | 60 | 615 | 1.33e-34 | 141 |
| Msa0520370 | AT5G28530.2 | 23.474 | 639 | 357 | 19 | 40 | 629 | 60 | 615 | 1.33e-34 | 141 |
| Msa0520370 | AT1G80010.1 | 24.824 | 427 | 263 | 12 | 209 | 631 | 289 | 661 | 1.92e-29 | 125 |
| Msa0520370 | AT1G52520.1 | 21.301 | 615 | 393 | 17 | 41 | 631 | 91 | 638 | 3.12e-28 | 121 |
| Msa0520370 | AT5G28530.4 | 22.037 | 599 | 356 | 18 | 40 | 629 | 60 | 556 | 5.48e-24 | 107 |
| Msa0520370 | AT4G19990.3 | 25.408 | 429 | 274 | 14 | 41 | 452 | 27 | 426 | 1.15e-23 | 107 |
| Msa0520370 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 560 | 690 | 495 | 615 | 1.40e-12 | 72.0 |
| Msa0520370 | AT4G19990.4 | 25.408 | 429 | 274 | 14 | 41 | 452 | 27 | 426 | 1.15e-23 | 107 |
| Msa0520370 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 560 | 690 | 495 | 615 | 1.40e-12 | 72.0 |
| Msa0520370 | AT4G19990.7 | 25.408 | 429 | 274 | 14 | 41 | 452 | 41 | 440 | 1.25e-23 | 107 |
| Msa0520370 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 560 | 690 | 509 | 629 | 1.58e-12 | 71.6 |
| Msa0520370 | AT4G19990.6 | 25.408 | 429 | 274 | 14 | 41 | 452 | 27 | 426 | 1.95e-23 | 106 |
| Msa0520370 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 560 | 690 | 495 | 615 | 1.54e-12 | 71.6 |
| Msa0520370 | AT4G19990.2 | 25.408 | 429 | 274 | 14 | 41 | 452 | 27 | 426 | 1.95e-23 | 106 |
| Msa0520370 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 560 | 690 | 495 | 615 | 1.54e-12 | 71.6 |
Find 116 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 3_4:-72934170 | Msa0520370:CDS |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 3_4:-72934479 | Msa0520370:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 3_4:+72933344 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 3_4:-72934212 | Msa0520370:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 3_4:-72935264 | Msa0520370:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 3_4:-72934760 | Msa0520370:intron |
| TATGGCTTGAGGTTTCTTAT+TGG | 0.276008 | 3_4:+72934633 | None:intergenic |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 3_4:-72934727 | Msa0520370:CDS |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 3_4:+72933350 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 3_4:-72934438 | Msa0520370:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 3_4:-72933498 | Msa0520370:CDS |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 3_4:+72935214 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 3_4:-72933100 | Msa0520370:three_prime_UTR |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 3_4:+72933282 | None:intergenic |
| ACTAGCCTGGTCTGTGTATA+TGG | 0.347339 | 3_4:+72934615 | None:intergenic |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 3_4:-72933915 | Msa0520370:CDS |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 3_4:-72934338 | Msa0520370:CDS |
| AATTCTTGATTGTTATGTAT+TGG | 0.372244 | 3_4:-72933119 | Msa0520370:three_prime_UTR |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 3_4:-72933506 | Msa0520370:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 3_4:-72935207 | Msa0520370:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 3_4:-72935215 | Msa0520370:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 3_4:-72934339 | Msa0520370:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.395048 | 3_4:+72933368 | None:intergenic |
| GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 3_4:+72933622 | None:intergenic |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 3_4:+72935745 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 3_4:-72933358 | Msa0520370:CDS |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 3_4:-72934038 | Msa0520370:CDS |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 3_4:-72933473 | Msa0520370:CDS |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 3_4:-72935974 | Msa0520370:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 3_4:-72933790 | Msa0520370:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 3_4:+72933867 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 3_4:-72935903 | Msa0520370:CDS |
| CGAGAAGCAAATGAAGTTCA+AGG | 0.419368 | 3_4:-72935568 | Msa0520370:CDS |
| GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 3_4:-72933832 | Msa0520370:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 3_4:+72933866 | None:intergenic |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 3_4:-72935686 | Msa0520370:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 3_4:-72935703 | Msa0520370:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 3_4:+72933689 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 3_4:-72935820 | Msa0520370:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 3_4:-72935538 | Msa0520370:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 3_4:-72936049 | Msa0520370:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 3_4:-72934548 | Msa0520370:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 3_4:-72934384 | Msa0520370:CDS |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 3_4:-72933789 | Msa0520370:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 3_4:-72935854 | Msa0520370:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 3_4:-72935493 | Msa0520370:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 3_4:+72934036 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 3_4:+72935709 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 3_4:-72935916 | Msa0520370:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 3_4:-72935424 | Msa0520370:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 3_4:+72935598 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 3_4:-72935860 | Msa0520370:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 3_4:+72934747 | None:intergenic |
| CTGTCTATGAACCATCTGTT+GGG | 0.491412 | 3_4:-72933397 | Msa0520370:CDS |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 3_4:-72934437 | Msa0520370:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 3_4:-72934198 | Msa0520370:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 3_4:+72934118 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 3_4:-72935506 | Msa0520370:CDS |
| TGAAGACTTAGAAGGCGTAA+TGG | 0.504815 | 3_4:+72933430 | None:intergenic |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 3_4:+72935610 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 3_4:-72934351 | Msa0520370:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 3_4:-72933853 | Msa0520370:CDS |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 3_4:-72934179 | Msa0520370:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 3_4:-72934333 | Msa0520370:CDS |
| TGTCTATAAGATATATAAGT+GGG | 0.514682 | 3_4:-72935650 | Msa0520370:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.518694 | 3_4:+72935454 | None:intergenic |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 3_4:+72933873 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 3_4:+72934230 | None:intergenic |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 3_4:-72933852 | Msa0520370:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 3_4:+72934041 | None:intergenic |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 3_4:-72933292 | Msa0520370:CDS |
| ACTTCAACAACGCACTAGCC+TGG | 0.534735 | 3_4:+72934602 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 3_4:-72935809 | Msa0520370:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 3_4:+72934235 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 3_4:-72935808 | Msa0520370:CDS |
| CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 3_4:-72935984 | Msa0520370:CDS |
| TGGTCTGTGTATATGGCTTG+AGG | 0.556772 | 3_4:+72934622 | None:intergenic |
| CTGAAATCCACCATGAATGT+TGG | 0.557140 | 3_4:-72933632 | Msa0520370:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 3_4:-72936025 | Msa0520370:CDS |
| GCTGTCTATGAACCATCTGT+TGG | 0.568181 | 3_4:-72933398 | Msa0520370:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 3_4:-72935490 | Msa0520370:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 3_4:-72933546 | Msa0520370:CDS |
| ATGTCTATAAGATATATAAG+TGG | 0.572287 | 3_4:-72935651 | Msa0520370:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 3_4:+72934117 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 3_4:-72933267 | Msa0520370:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 3_4:+72934096 | None:intergenic |
| ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 3_4:-72936060 | Msa0520370:CDS |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 3_4:-72935499 | Msa0520370:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 3_4:-72933505 | Msa0520370:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 3_4:-72933510 | Msa0520370:CDS |
| ATAAGTTAGGAAAGATGATG+AGG | 0.591839 | 3_4:-72933204 | Msa0520370:three_prime_UTR |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 3_4:-72933883 | Msa0520370:CDS |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 3_4:-72935418 | Msa0520370:intron |
| GAGGCTTTAACAATTTAAGC+GGG | 0.600751 | 3_4:-72933248 | Msa0520370:exon |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 3_4:+72933598 | None:intergenic |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 3_4:-72935505 | Msa0520370:CDS |
| TTTGGTGTAGTCCCAACAGA+TGG | 0.603444 | 3_4:+72933386 | None:intergenic |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 3_4:-72933543 | Msa0520370:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 3_4:-72934120 | Msa0520370:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 3_4:-72934035 | Msa0520370:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 3_4:+72935760 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 3_4:+72934382 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 3_4:-72935485 | Msa0520370:CDS |
| TGAGGCTTTAACAATTTAAG+CGG | 0.627823 | 3_4:-72933249 | Msa0520370:exon |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 3_4:+72933868 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 3_4:-72934547 | Msa0520370:CDS |
| TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 3_4:+72933625 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 3_4:-72934197 | Msa0520370:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 3_4:+72933647 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 3_4:+72934076 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 3_4:-72933521 | Msa0520370:CDS |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 3_4:+72933771 | None:intergenic |
| TCAAGCCATATACACAGACC+AGG | 0.664578 | 3_4:-72934620 | Msa0520370:CDS |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 3_4:-72933788 | Msa0520370:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 3_4:-72933937 | Msa0520370:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 3_4:-72933936 | Msa0520370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATGTTATAAGTT+AGG | - | chr3_4:72935952-72935971 | Msa0520370:CDS | 10.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr3_4:72933253-72933272 | Msa0520370:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr3_4:72933309-72933328 | Msa0520370:CDS | 20.0% |
| !! | ATGTCTATAAGATATATAAG+TGG | - | chr3_4:72933518-72933537 | Msa0520370:CDS | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | - | chr3_4:72933519-72933538 | Msa0520370:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr3_4:72934109-72934128 | Msa0520370:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr3_4:72934137-72934156 | Msa0520370:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr3_4:72934760-72934779 | Msa0520370:intron | 20.0% |
| !! | AATTCTTGATTGTTATGTAT+TGG | - | chr3_4:72936050-72936069 | Msa0520370:CDS | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr3_4:72933144-72933163 | Msa0520370:three_prime_UTR | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | - | chr3_4:72933185-72933204 | Msa0520370:three_prime_UTR | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr3_4:72933305-72933324 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr3_4:72933315-72933334 | Msa0520370:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr3_4:72933631-72933650 | Msa0520370:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr3_4:72933954-72933973 | Msa0520370:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr3_4:72933980-72933999 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr3_4:72934027-72934046 | Msa0520370:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr3_4:72934129-72934148 | Msa0520370:CDS | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr3_4:72934136-72934155 | Msa0520370:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr3_4:72934386-72934405 | Msa0520370:CDS | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr3_4:72934598-72934617 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr3_4:72934690-72934709 | Msa0520370:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr3_4:72934764-72934783 | Msa0520370:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr3_4:72934957-72934976 | Msa0520370:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr3_4:72935096-72935115 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr3_4:72935131-72935150 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr3_4:72935131-72935150 | Msa0520370:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr3_4:72935232-72935251 | Msa0520370:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr3_4:72935233-72935252 | Msa0520370:CDS | 25.0% |
| ATATTAACTTCATCTGAGAG+TGG | - | chr3_4:72933109-72933128 | Msa0520370:three_prime_UTR | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr3_4:72933195-72933214 | Msa0520370:three_prime_UTR | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr3_4:72933360-72933379 | Msa0520370:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr3_4:72933361-72933380 | Msa0520370:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr3_4:72933450-72933469 | Msa0520370:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr3_4:72933483-72933502 | Msa0520370:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr3_4:72933562-72933581 | None:intergenic | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | - | chr3_4:72933664-72933683 | Msa0520370:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr3_4:72933708-72933727 | Msa0520370:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr3_4:72933718-72933737 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr3_4:72933833-72933852 | None:intergenic | 30.0% | |
| !!! | AAGACATAGCCAGTATTTTT+TGG | - | chr3_4:72933867-72933886 | Msa0520370:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | - | chr3_4:72933868-72933887 | Msa0520370:CDS | 30.0% |
| CAACAAGATTATGCTCTATT+TGG | - | chr3_4:72933905-72933924 | Msa0520370:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr3_4:72933958-72933977 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr3_4:72933962-72933981 | Msa0520370:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr3_4:72934041-72934060 | Msa0520370:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr3_4:72934066-72934085 | Msa0520370:CDS | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr3_4:72934200-72934219 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr3_4:72934345-72934364 | Msa0520370:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr3_4:72934425-72934444 | None:intergenic | 30.0% | |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr3_4:72934589-72934608 | Msa0520370:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr3_4:72934601-72934620 | Msa0520370:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr3_4:72934646-72934665 | Msa0520370:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr3_4:72934731-72934750 | Msa0520370:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr3_4:72934732-72934751 | Msa0520370:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr3_4:72934942-72934961 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr3_4:72935076-72935095 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr3_4:72935136-72935155 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr3_4:72935134-72935153 | Msa0520370:intron | 30.0% | |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr3_4:72935191-72935210 | Msa0520370:intron | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | chr3_4:72935304-72935323 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr3_4:72935305-72935324 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr3_4:72935316-72935335 | Msa0520370:intron | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr3_4:72935317-72935336 | Msa0520370:intron | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr3_4:72935413-72935432 | Msa0520370:intron | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr3_4:72935416-72935435 | Msa0520370:intron | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr3_4:72935481-72935500 | Msa0520370:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | - | chr3_4:72935648-72935667 | Msa0520370:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr3_4:72935696-72935715 | Msa0520370:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr3_4:72935804-72935823 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr3_4:72935811-72935830 | Msa0520370:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr3_4:72935822-72935841 | None:intergenic | 30.0% | |
| ! | TGAGGCTTTAACAATTTAAG+CGG | - | chr3_4:72935920-72935939 | Msa0520370:CDS | 30.0% |
| ATAAGTTAGGAAAGATGATG+AGG | - | chr3_4:72935965-72935984 | Msa0520370:CDS | 30.0% | |
| ! | TGAGGCTTTAACTAAAAAAG+CGG | - | chr3_4:72935983-72936002 | Msa0520370:CDS | 30.0% |
| ATAACACTGGATTCTCTGTT+AGG | - | chr3_4:72933266-72933285 | Msa0520370:CDS | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr3_4:72933349-72933368 | Msa0520370:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr3_4:72933386-72933405 | Msa0520370:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr3_4:72933427-72933446 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr3_4:72933444-72933463 | Msa0520370:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr3_4:72933449-72933468 | Msa0520370:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr3_4:72933663-72933682 | Msa0520370:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr3_4:72933745-72933764 | Msa0520370:CDS | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr3_4:72934047-72934066 | Msa0520370:CDS | 35.0% |
| CATAAATTCCAAGGCAAGAT+AGG | + | chr3_4:72934167-72934186 | None:intergenic | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | + | chr3_4:72934176-72934195 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr3_4:72934442-72934461 | Msa0520370:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr3_4:72934485-72934504 | Msa0520370:CDS | 35.0% |
| TATGGCTTGAGGTTTCTTAT+TGG | + | chr3_4:72934539-72934558 | None:intergenic | 35.0% | |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr3_4:72934614-72934633 | Msa0520370:CDS | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | chr3_4:72934774-72934793 | Msa0520370:intron | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | - | chr3_4:72934818-72934837 | Msa0520370:intron | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr3_4:72934831-72934850 | Msa0520370:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr3_4:72934901-72934920 | Msa0520370:intron | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr3_4:72934971-72934990 | Msa0520370:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr3_4:72934972-72934991 | Msa0520370:intron | 35.0% | |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | chr3_4:72935254-72935273 | Msa0520370:CDS | 35.0% |
| CGATTATGATCTTCAAACCT+TGG | + | chr3_4:72935306-72935325 | None:intergenic | 35.0% | |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr3_4:72935423-72935442 | Msa0520370:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr3_4:72935483-72935502 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr3_4:72935484-72935503 | Msa0520370:CDS | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr3_4:72935750-72935769 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | - | chr3_4:72935877-72935896 | Msa0520370:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr3_4:72935902-72935921 | Msa0520370:CDS | 35.0% | |
| ! | GAGGCTTTAACAATTTAAGC+GGG | - | chr3_4:72935921-72935940 | Msa0520370:CDS | 35.0% |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr3_4:72933120-72933139 | Msa0520370:three_prime_UTR | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr3_4:72933400-72933419 | None:intergenic | 40.0% |
| CGAGAAGCAAATGAAGTTCA+AGG | - | chr3_4:72933601-72933620 | Msa0520370:CDS | 40.0% | |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr3_4:72933670-72933689 | Msa0520370:CDS | 40.0% |
| TCCATCTGCCCAAAAAATAC+TGG | + | chr3_4:72933879-72933898 | None:intergenic | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | - | chr3_4:72934180-72934199 | Msa0520370:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr3_4:72934290-72934309 | Msa0520370:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr3_4:72934294-72934313 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | - | chr3_4:72934409-72934428 | Msa0520370:CDS | 40.0% | |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr3_4:72934830-72934849 | Msa0520370:intron | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr3_4:72934937-72934956 | None:intergenic | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | - | chr3_4:72934999-72935018 | Msa0520370:intron | 40.0% |
| TTGAAGAAAACCTTTCCCCA+AGG | - | chr3_4:72935286-72935305 | Msa0520370:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr3_4:72935379-72935398 | Msa0520370:intron | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr3_4:72935380-72935399 | Msa0520370:intron | 40.0% | |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr3_4:72935426-72935445 | Msa0520370:CDS | 40.0% |
| GATTTCAGCTTATCGACAGA+CGG | + | chr3_4:72935525-72935544 | None:intergenic | 40.0% | |
| CTGAAATCCACCATGAATGT+TGG | - | chr3_4:72935537-72935556 | Msa0520370:CDS | 40.0% | |
| TTTAGTGCCAACATTCATGG+TGG | + | chr3_4:72935547-72935566 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr3_4:72935550-72935569 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | + | chr3_4:72935574-72935593 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | chr3_4:72935659-72935678 | Msa0520370:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+TGG | + | chr3_4:72935742-72935761 | None:intergenic | 40.0% |
| CTGTCTATGAACCATCTGTT+GGG | - | chr3_4:72935772-72935791 | Msa0520370:CDS | 40.0% | |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr3_4:72935828-72935847 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr3_4:72935890-72935909 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr3_4:72933412-72933431 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr3_4:72933454-72933473 | Msa0520370:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr3_4:72933463-72933482 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr3_4:72933466-72933485 | Msa0520370:CDS | 45.0% |
| CTCAAGTAGCACAAATGCTC+TGG | + | chr3_4:72933574-72933593 | None:intergenic | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr3_4:72933751-72933770 | Msa0520370:CDS | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr3_4:72933754-72933773 | Msa0520370:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr3_4:72933812-72933831 | Msa0520370:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr3_4:72933853-72933872 | None:intergenic | 45.0% | |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | - | chr3_4:72933875-72933894 | Msa0520370:CDS | 45.0% |
| TGGTCTGTGTATATGGCTTG+AGG | + | chr3_4:72934550-72934569 | None:intergenic | 45.0% | |
| TCAAGCCATATACACAGACC+AGG | - | chr3_4:72934549-72934568 | Msa0520370:CDS | 45.0% | |
| ! | ACTAGCCTGGTCTGTGTATA+TGG | + | chr3_4:72934557-72934576 | None:intergenic | 45.0% |
| AGCCACTTAAAGTCCGAAGT+AGG | + | chr3_4:72934790-72934809 | None:intergenic | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr3_4:72934836-72934855 | Msa0520370:intron | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr3_4:72934853-72934872 | Msa0520370:intron | 45.0% |
| GAGGGATAATCATGCTGAGT+TGG | - | chr3_4:72934990-72935009 | Msa0520370:intron | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr3_4:72935049-72935068 | Msa0520370:intron | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr3_4:72935299-72935318 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr3_4:72935381-72935400 | Msa0520370:intron | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr3_4:72935401-72935420 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr3_4:72935671-72935690 | Msa0520370:CDS | 45.0% | |
| GCTGTCTATGAACCATCTGT+TGG | - | chr3_4:72935771-72935790 | Msa0520370:CDS | 45.0% | |
| ! | TTTGGTGTAGTCCCAACAGA+TGG | + | chr3_4:72935786-72935805 | None:intergenic | 45.0% |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr3_4:72933676-72933695 | Msa0520370:CDS | 50.0% |
| TGGGTGATCCTATCTTGCCT+TGG | - | chr3_4:72934156-72934175 | Msa0520370:CDS | 50.0% | |
| ACTTCAACAACGCACTAGCC+TGG | + | chr3_4:72934570-72934589 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr3_4:72934621-72934640 | Msa0520370:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr3_4:72934622-72934641 | Msa0520370:CDS | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | chr3_4:72934785-72934804 | Msa0520370:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr3_4:72935054-72935073 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | - | chr3_4:72935337-72935356 | Msa0520370:intron | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | chr3_4:72935623-72935642 | Msa0520370:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | chr3_4:72935664-72935683 | Msa0520370:CDS | 50.0% | |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr3_4:72933679-72933698 | Msa0520370:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr3_4:72933758-72933777 | Msa0520370:CDS | 55.0% |
| GGACCGCATAAGCTGACTGT+TGG | + | chr3_4:72935055-72935074 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | chr3_4:72935663-72935682 | Msa0520370:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr3_4:72935677-72935696 | Msa0520370:CDS | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr3_4:72933684-72933703 | Msa0520370:CDS | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | - | chr3_4:72935626-72935645 | Msa0520370:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 72933100 | 72936091 | 72933100 | ID=Msa0520370;Name=Msa0520370 |
| chr3_4 | mRNA | 72933100 | 72936091 | 72933100 | ID=Msa0520370-mRNA-1;Parent=Msa0520370;Name=Msa0520370-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.5|0.33|1|1|1|3|153|769 |
| chr3_4 | exon | 72933100 | 72934772 | 72933100 | ID=Msa0520370-mRNA-1:exon:20285;Parent=Msa0520370-mRNA-1 |
| chr3_4 | exon | 72935208 | 72935324 | 72935208 | ID=Msa0520370-mRNA-1:exon:20284;Parent=Msa0520370-mRNA-1 |
| chr3_4 | exon | 72935419 | 72936091 | 72935419 | ID=Msa0520370-mRNA-1:exon:20283;Parent=Msa0520370-mRNA-1 |
| chr3_4 | CDS | 72935419 | 72936091 | 72935419 | ID=Msa0520370-mRNA-1:cds;Parent=Msa0520370-mRNA-1 |
| chr3_4 | CDS | 72935208 | 72935324 | 72935208 | ID=Msa0520370-mRNA-1:cds;Parent=Msa0520370-mRNA-1 |
| chr3_4 | CDS | 72933253 | 72934772 | 72933253 | ID=Msa0520370-mRNA-1:cds;Parent=Msa0520370-mRNA-1 |
| chr3_4 | three_prime_UTR | 72933100 | 72933252 | 72933100 | ID=Msa0520370-mRNA-1:three_prime_utr;Parent=Msa0520370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
