Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520390 | AES73439.1 | 85.207 | 507 | 43 | 7 | 1 | 488 | 5 | 498 | 0.0 | 847 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520390 | G7J8D2 | 85.207 | 507 | 43 | 7 | 1 | 488 | 5 | 498 | 0.0 | 847 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0520390 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520390 | MtrunA17_Chr3g0136081 | 81.439 | 528 | 45 | 7 | 1 | 488 | 5 | 519 | 0.0 | 833 |
| Msa0520390 | MtrunA17_Chr3g0105711 | 51.171 | 555 | 180 | 15 | 1 | 487 | 10 | 541 | 5.43e-157 | 457 |
| Msa0520390 | MtrunA17_Chr5g0406901 | 49.296 | 71 | 34 | 1 | 383 | 453 | 199 | 267 | 2.02e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520390 | AT5G16100.2 | 32.721 | 272 | 128 | 11 | 248 | 472 | 177 | 440 | 3.18e-33 | 131 |
Find 100 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCTTTCTGTGGGGCCATC+TGG | 0.198703 | 3_4:+72942873 | None:intergenic |
| GGCAATACATTGGAATTAAA+TGG | 0.208227 | 3_4:+72944328 | None:intergenic |
| TTCCAACTCCATGAAGATTT+TGG | 0.209996 | 3_4:+72944449 | None:intergenic |
| AATCTTATTCAAAATAATTC+AGG | 0.275363 | 3_4:-72943353 | Msa0520390:intron |
| ACCACAATGTTTAATCATTT+CGG | 0.280881 | 3_4:+72942659 | None:intergenic |
| CACCATCAGATACCTGTTAA+TGG | 0.281140 | 3_4:-72943675 | Msa0520390:CDS |
| TTTGAAAAGCTTGAGATTCA+TGG | 0.294484 | 3_4:-72943726 | Msa0520390:CDS |
| TTGGATTGATGATATTAATA+TGG | 0.313839 | 3_4:-72943378 | Msa0520390:CDS |
| ACCATCAGATACCTGTTAAT+GGG | 0.352749 | 3_4:-72943674 | Msa0520390:CDS |
| ACTGATGGGGCCCCATTAAC+AGG | 0.356308 | 3_4:+72943663 | None:intergenic |
| GGGGTCCATGCTGAGTTTGT+TGG | 0.358398 | 3_4:+72944473 | None:intergenic |
| TACTATGGACTTGGAATAGT+TGG | 0.361403 | 3_4:-72944376 | Msa0520390:CDS |
| TGATCTGCTGCTTCATCAAT+AGG | 0.368145 | 3_4:+72942955 | None:intergenic |
| GGGTCCATGCTGAGTTTGTT+GGG | 0.371034 | 3_4:+72944474 | None:intergenic |
| CAAGAGCAAATGGGTGATAA+TGG | 0.372132 | 3_4:-72943169 | Msa0520390:CDS |
| CCATCCCAAGAAAATTACTA+TGG | 0.379676 | 3_4:-72944391 | Msa0520390:CDS |
| GTTGGTGGTAGTAATAATAA+TGG | 0.384415 | 3_4:-72944358 | Msa0520390:CDS |
| CTCTTTGCACTGGATTGGAT+TGG | 0.394071 | 3_4:-72943397 | Msa0520390:CDS |
| TCTTATGTTTCCAGATGAAT+TGG | 0.399104 | 3_4:-72943197 | Msa0520390:intron |
| AAAACGGGAATCTGAATTGC+AGG | 0.401372 | 3_4:+72943953 | None:intergenic |
| GTTTAATCATTTCGGTTTGA+AGG | 0.403646 | 3_4:+72942667 | None:intergenic |
| TCAAATTACTAGCAAATCAA+TGG | 0.407732 | 3_4:-72942740 | Msa0520390:CDS |
| TCGGTTTGGTTCAACAAAAC+GGG | 0.413527 | 3_4:+72943938 | None:intergenic |
| TTGATTAAGTGCCCGCAGTT+CGG | 0.413996 | 3_4:+72943919 | None:intergenic |
| TTCGGTTTGGTTCAACAAAA+CGG | 0.419751 | 3_4:+72943937 | None:intergenic |
| GATTCTAAATTGTAAGCAAA+TGG | 0.423137 | 3_4:+72944277 | None:intergenic |
| GTAATTTGATCTGCTTCAAA+AGG | 0.424097 | 3_4:+72942754 | None:intergenic |
| TGAGACTCTTTGCACTGGAT+TGG | 0.424222 | 3_4:-72943402 | Msa0520390:CDS |
| CAAGAAAATTACTATGGACT+TGG | 0.426462 | 3_4:-72944385 | Msa0520390:CDS |
| GATAAATCTGCTAGTGTTGT+TGG | 0.428775 | 3_4:+72944538 | None:intergenic |
| ACCTTTCTGTGGGGCCATCT+GGG | 0.433450 | 3_4:+72942874 | None:intergenic |
| GGACCCCACCAAAATCTTCA+TGG | 0.435855 | 3_4:-72944457 | Msa0520390:CDS |
| ATGAACTACCATCCACTTCA+AGG | 0.439320 | 3_4:+72944008 | None:intergenic |
| TATTCATATTGAAGAAAGTT+GGG | 0.441269 | 3_4:+72944563 | None:intergenic |
| CCATGATATTCAACAAGGTC+AGG | 0.445114 | 3_4:-72944194 | Msa0520390:CDS |
| TCATATTGATCTTGAACCAT+TGG | 0.458294 | 3_4:+72944067 | None:intergenic |
| AAGAAAACTTGTCGTAAAGC+AGG | 0.469657 | 3_4:-72942901 | Msa0520390:CDS |
| CCTGACCTTGTTGAATATCA+TGG | 0.476020 | 3_4:+72944194 | None:intergenic |
| CACCAAAATCTTCATGGAGT+TGG | 0.477847 | 3_4:-72944451 | Msa0520390:CDS |
| TAAGTGCCCGCAGTTCGGTT+TGG | 0.482116 | 3_4:+72943924 | None:intergenic |
| ACTTGTTCTGAGAGGTTCCT+AGG | 0.487950 | 3_4:+72943142 | None:intergenic |
| TTATTCATATTGAAGAAAGT+TGG | 0.488611 | 3_4:+72944562 | None:intergenic |
| AGCAAATCAATGGGAAGGAC+AGG | 0.496313 | 3_4:-72942730 | Msa0520390:CDS |
| ATTGGTGGAGCAAGAGCAAA+TGG | 0.500485 | 3_4:-72943179 | Msa0520390:CDS |
| CAAATTACTAGCAAATCAAT+GGG | 0.500638 | 3_4:-72942739 | Msa0520390:CDS |
| TATCGCTGCTGCGGCTAAAG+TGG | 0.502806 | 3_4:+72942594 | None:intergenic |
| AACTGCGGGCACTTAATCAA+TGG | 0.515958 | 3_4:-72943916 | Msa0520390:CDS |
| TCAATCATTTGATAAACTGA+TGG | 0.522363 | 3_4:+72943648 | None:intergenic |
| TATGTTTCCAGATGAATTGG+TGG | 0.524014 | 3_4:-72943194 | Msa0520390:intron |
| GTCTCATAAAATTCAGACAT+TGG | 0.526543 | 3_4:+72943419 | None:intergenic |
| CAATCATTTGATAAACTGAT+GGG | 0.528489 | 3_4:+72943649 | None:intergenic |
| TTACCACTCTGATTCTGTTG+TGG | 0.528506 | 3_4:+72944307 | None:intergenic |
| GCTTGAGATTCATGGAAGGT+TGG | 0.532570 | 3_4:-72943718 | Msa0520390:CDS |
| AGACAAGGGCAAGGACTGAA+GGG | 0.537367 | 3_4:-72942701 | Msa0520390:CDS |
| TGGAATAAATAGCCTTGAAG+TGG | 0.539422 | 3_4:-72944020 | Msa0520390:CDS |
| GTTGAACCAAACCGAACTGC+GGG | 0.542214 | 3_4:-72943930 | Msa0520390:CDS |
| ATAAATCTGCTAGTGTTGTT+GGG | 0.542463 | 3_4:+72944539 | None:intergenic |
| CTGCGGCTAAAGTGGCAAGA+AGG | 0.552292 | 3_4:+72942602 | None:intergenic |
| ATTGAAGAAAGTTGGGTCAA+CGG | 0.554503 | 3_4:+72944570 | None:intergenic |
| TATGGACTTGGAATAGTTGG+TGG | 0.555087 | 3_4:-72944373 | Msa0520390:CDS |
| ACCCAGATGGCCCCACAGAA+AGG | 0.563782 | 3_4:-72942875 | Msa0520390:intron |
| GAGACAAGGGCAAGGACTGA+AGG | 0.565953 | 3_4:-72942702 | Msa0520390:CDS |
| CCCCATTAACAGGTATCTGA+TGG | 0.567348 | 3_4:+72943673 | None:intergenic |
| GTAAAGCAGGGTTACCCAGA+TGG | 0.568095 | 3_4:-72942888 | Msa0520390:CDS |
| TGTGTGGAACGTCATTTAGC+AGG | 0.571153 | 3_4:-72943461 | Msa0520390:CDS |
| AGTTTGTTGGGACAGTGCAG+TGG | 0.571941 | 3_4:+72944486 | None:intergenic |
| GTCCATGTTGTTGTACATCA+TGG | 0.572620 | 3_4:+72944125 | None:intergenic |
| AGAAAACTTGTCGTAAAGCA+GGG | 0.586540 | 3_4:-72942900 | Msa0520390:CDS |
| CGGCTAAAGTGGCAAGAAGG+CGG | 0.587716 | 3_4:+72942605 | None:intergenic |
| ATTCTGTTGTGGCAATACAT+TGG | 0.591773 | 3_4:+72944318 | None:intergenic |
| CACCATGATGTACAACAACA+TGG | 0.591982 | 3_4:-72944127 | Msa0520390:CDS |
| GATATTCAACAAGGTCAGGA+TGG | 0.598749 | 3_4:-72944190 | Msa0520390:CDS |
| ATAAATAGCCTTGAAGTGGA+TGG | 0.603975 | 3_4:-72944016 | Msa0520390:CDS |
| GAAATGATTAAACATTGTGG+TGG | 0.607415 | 3_4:-72942657 | Msa0520390:CDS |
| TGAATATCATGGTAAATGAA+CGG | 0.610177 | 3_4:+72944205 | None:intergenic |
| ACCGAAATGATTAAACATTG+TGG | 0.612061 | 3_4:-72942660 | Msa0520390:CDS |
| CCATCAGATACCTGTTAATG+GGG | 0.617286 | 3_4:-72943673 | Msa0520390:CDS |
| AAAAGCTTGAGATTCATGGA+AGG | 0.617730 | 3_4:-72943722 | Msa0520390:CDS |
| TTACTAGCAAATCAATGGGA+AGG | 0.619972 | 3_4:-72942735 | Msa0520390:CDS |
| CTGTCCCAACAAACTCAGCA+TGG | 0.622021 | 3_4:-72944478 | Msa0520390:CDS |
| GTTTGTTGGGACAGTGCAGT+GGG | 0.622118 | 3_4:+72944487 | None:intergenic |
| TGTTGAACCAAACCGAACTG+CGG | 0.627319 | 3_4:-72943931 | Msa0520390:CDS |
| CAACAACATGGACATGGACA+TGG | 0.630152 | 3_4:-72944115 | Msa0520390:CDS |
| CATCATATTCAACAACTGCA+TGG | 0.630346 | 3_4:-72944241 | Msa0520390:CDS |
| AGAGAAATCATACACACTGA+TGG | 0.630751 | 3_4:-72943848 | Msa0520390:intron |
| AAATACGGGGTTACTGTGGG+TGG | 0.632071 | 3_4:+72943893 | None:intergenic |
| GCGATGTCATACAACGCGGT+TGG | 0.634750 | 3_4:+72942627 | None:intergenic |
| GACAAGGGCAAGGACTGAAG+GGG | 0.636524 | 3_4:-72942700 | Msa0520390:CDS |
| ATTTACCATGATATTCAACA+AGG | 0.642604 | 3_4:-72944199 | Msa0520390:CDS |
| ATATTATTACTTGTTCTGAG+AGG | 0.643167 | 3_4:+72943134 | None:intergenic |
| GATGTACAACAACATGGACA+TGG | 0.659086 | 3_4:-72944121 | Msa0520390:CDS |
| AGGACAGGATACAGAGACAA+GGG | 0.660676 | 3_4:-72942715 | Msa0520390:CDS |
| AATCATTTGATAAACTGATG+GGG | 0.687280 | 3_4:+72943650 | None:intergenic |
| TTGGTGGAGCAAGAGCAAAT+GGG | 0.694143 | 3_4:-72943178 | Msa0520390:CDS |
| AAGGACAGGATACAGAGACA+AGG | 0.695100 | 3_4:-72942716 | Msa0520390:CDS |
| AGGATACAGAGACAAGGGCA+AGG | 0.701884 | 3_4:-72942710 | Msa0520390:CDS |
| TGGGTGATAATGGAACGCCT+AGG | 0.709329 | 3_4:-72943159 | Msa0520390:CDS |
| CATATTCAACAACTGCATGG+TGG | 0.712817 | 3_4:-72944238 | Msa0520390:CDS |
| TTGCCACAACAGAATCAGAG+TGG | 0.727563 | 3_4:-72944310 | Msa0520390:CDS |
| GGCGGCGATGTCATACAACG+CGG | 0.812023 | 3_4:+72942623 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATAATAATTTTTCATT+TGG | - | chr3_4:72943178-72943197 | Msa0520390:CDS | 10.0% |
| !!! | AACAATAATAATTTTTCATT+TGG | - | chr3_4:72943178-72943197 | Msa0520390:CDS | 10.0% |
| !!! | ATTGTTGTTATTTTTATCAA+TGG | + | chr3_4:72942705-72942724 | None:intergenic | 15.0% |
| !! | TATCAAAATAATAGAAACAT+GGG | + | chr3_4:72943432-72943451 | None:intergenic | 15.0% |
| !! | ATATCAAAATAATAGAAACA+TGG | + | chr3_4:72943433-72943452 | None:intergenic | 15.0% |
| !! | AATCTTATTCAAAATAATTC+AGG | - | chr3_4:72943865-72943884 | Msa0520390:CDS | 15.0% |
| !!! | ATTGTTGTTATTTTTATCAA+TGG | + | chr3_4:72942705-72942724 | None:intergenic | 15.0% |
| !! | TATCAAAATAATAGAAACAT+GGG | + | chr3_4:72943432-72943451 | None:intergenic | 15.0% |
| !! | ATATCAAAATAATAGAAACA+TGG | + | chr3_4:72943433-72943452 | None:intergenic | 15.0% |
| !! | AATCTTATTCAAAATAATTC+AGG | - | chr3_4:72943865-72943884 | Msa0520390:CDS | 15.0% |
| !! | TATTCATATTGAAGAAAGTT+GGG | + | chr3_4:72942658-72942677 | None:intergenic | 20.0% |
| !! | TTATTCATATTGAAGAAAGT+TGG | + | chr3_4:72942659-72942678 | None:intergenic | 20.0% |
| !! | TGATAAAAATAACAACAATG+TGG | - | chr3_4:72942706-72942725 | Msa0520390:CDS | 20.0% |
| !! | GATAAAAATAACAACAATGT+GGG | - | chr3_4:72942707-72942726 | Msa0520390:CDS | 20.0% |
| !!! | TGGTAATATTGATTCATTTT+CGG | - | chr3_4:72943048-72943067 | Msa0520390:intron | 20.0% |
| !!! | AAAAATTCTTTATTTCACCA+AGG | + | chr3_4:72943726-72943745 | None:intergenic | 20.0% |
| !!! | TGGTGAAATAAAGAATTTTT+TGG | - | chr3_4:72943726-72943745 | Msa0520390:CDS | 20.0% |
| !!! | TTGGATTGATGATATTAATA+TGG | - | chr3_4:72943840-72943859 | Msa0520390:intron | 20.0% |
| !! | TATTCATATTGAAGAAAGTT+GGG | + | chr3_4:72942658-72942677 | None:intergenic | 20.0% |
| !! | TTATTCATATTGAAGAAAGT+TGG | + | chr3_4:72942659-72942678 | None:intergenic | 20.0% |
| !! | TGATAAAAATAACAACAATG+TGG | - | chr3_4:72942706-72942725 | Msa0520390:CDS | 20.0% |
| !! | GATAAAAATAACAACAATGT+GGG | - | chr3_4:72942707-72942726 | Msa0520390:CDS | 20.0% |
| !!! | TGGTAATATTGATTCATTTT+CGG | - | chr3_4:72943048-72943067 | Msa0520390:intron | 20.0% |
| !!! | AAAAATTCTTTATTTCACCA+AGG | + | chr3_4:72943726-72943745 | None:intergenic | 20.0% |
| !!! | TGGTGAAATAAAGAATTTTT+TGG | - | chr3_4:72943726-72943745 | Msa0520390:CDS | 20.0% |
| !!! | TTGGATTGATGATATTAATA+TGG | - | chr3_4:72943840-72943859 | Msa0520390:intron | 20.0% |
| !! | AAGTCCATAGTAATTTTCTT+GGG | + | chr3_4:72942834-72942853 | None:intergenic | 25.0% |
| ! | GATTCTAAATTGTAAGCAAA+TGG | + | chr3_4:72942944-72942963 | None:intergenic | 25.0% |
| !! | TGAATATGATGATCATTTTC+TGG | + | chr3_4:72942968-72942987 | None:intergenic | 25.0% |
| ! | TGAATATCATGGTAAATGAA+CGG | + | chr3_4:72943016-72943035 | None:intergenic | 25.0% |
| ! | ATTTACCATGATATTCAACA+AGG | - | chr3_4:72943019-72943038 | Msa0520390:intron | 25.0% |
| ! | AATCATTTGATAAACTGATG+GGG | + | chr3_4:72943571-72943590 | None:intergenic | 25.0% |
| ! | CAATCATTTGATAAACTGAT+GGG | + | chr3_4:72943572-72943591 | None:intergenic | 25.0% |
| ! | TCAATCATTTGATAAACTGA+TGG | + | chr3_4:72943573-72943592 | None:intergenic | 25.0% |
| !! | AACTTTTGTAACAGTTTTTG+TGG | - | chr3_4:72943694-72943713 | Msa0520390:CDS | 25.0% |
| !! | ACTTTTGTAACAGTTTTTGT+GGG | - | chr3_4:72943695-72943714 | Msa0520390:CDS | 25.0% |
| !! | ATATTATTACTTGTTCTGAG+AGG | + | chr3_4:72944087-72944106 | None:intergenic | 25.0% |
| ! | TCTTGTGTGTTATACTTATT+TGG | - | chr3_4:72944376-72944395 | Msa0520390:CDS | 25.0% |
| ! | AGACACATTATATTAGCAAA+AGG | + | chr3_4:72944421-72944440 | None:intergenic | 25.0% |
| ! | TCAAATTACTAGCAAATCAA+TGG | - | chr3_4:72944478-72944497 | Msa0520390:CDS | 25.0% |
| ! | CAAATTACTAGCAAATCAAT+GGG | - | chr3_4:72944479-72944498 | Msa0520390:CDS | 25.0% |
| ! | ACCACAATGTTTAATCATTT+CGG | + | chr3_4:72944562-72944581 | None:intergenic | 25.0% |
| !! | AAGTCCATAGTAATTTTCTT+GGG | + | chr3_4:72942834-72942853 | None:intergenic | 25.0% |
| ! | GATTCTAAATTGTAAGCAAA+TGG | + | chr3_4:72942944-72942963 | None:intergenic | 25.0% |
| !! | TGAATATGATGATCATTTTC+TGG | + | chr3_4:72942968-72942987 | None:intergenic | 25.0% |
| ! | TGAATATCATGGTAAATGAA+CGG | + | chr3_4:72943016-72943035 | None:intergenic | 25.0% |
| ! | ATTTACCATGATATTCAACA+AGG | - | chr3_4:72943019-72943038 | Msa0520390:intron | 25.0% |
| ! | AATCATTTGATAAACTGATG+GGG | + | chr3_4:72943571-72943590 | None:intergenic | 25.0% |
| ! | CAATCATTTGATAAACTGAT+GGG | + | chr3_4:72943572-72943591 | None:intergenic | 25.0% |
| ! | TCAATCATTTGATAAACTGA+TGG | + | chr3_4:72943573-72943592 | None:intergenic | 25.0% |
| !! | AACTTTTGTAACAGTTTTTG+TGG | - | chr3_4:72943694-72943713 | Msa0520390:CDS | 25.0% |
| !! | ACTTTTGTAACAGTTTTTGT+GGG | - | chr3_4:72943695-72943714 | Msa0520390:CDS | 25.0% |
| !! | ATATTATTACTTGTTCTGAG+AGG | + | chr3_4:72944087-72944106 | None:intergenic | 25.0% |
| ! | TCTTGTGTGTTATACTTATT+TGG | - | chr3_4:72944376-72944395 | Msa0520390:CDS | 25.0% |
| ! | AGACACATTATATTAGCAAA+AGG | + | chr3_4:72944421-72944440 | None:intergenic | 25.0% |
| ! | TCAAATTACTAGCAAATCAA+TGG | - | chr3_4:72944478-72944497 | Msa0520390:CDS | 25.0% |
| ! | CAAATTACTAGCAAATCAAT+GGG | - | chr3_4:72944479-72944498 | Msa0520390:CDS | 25.0% |
| ! | ACCACAATGTTTAATCATTT+CGG | + | chr3_4:72944562-72944581 | None:intergenic | 25.0% |
| ! | ATAAATCTGCTAGTGTTGTT+GGG | + | chr3_4:72942682-72942701 | None:intergenic | 30.0% |
| ! | CAAGTCCATAGTAATTTTCT+TGG | + | chr3_4:72942835-72942854 | None:intergenic | 30.0% |
| CAAGAAAATTACTATGGACT+TGG | - | chr3_4:72942833-72942852 | Msa0520390:intron | 30.0% | |
| !! | GTTGGTGGTAGTAATAATAA+TGG | - | chr3_4:72942860-72942879 | Msa0520390:intron | 30.0% |
| GGCAATACATTGGAATTAAA+TGG | + | chr3_4:72942893-72942912 | None:intergenic | 30.0% | |
| ! | TGAAACATTTTCTGTTCCAA+TGG | - | chr3_4:72943135-72943154 | Msa0520390:intron | 30.0% |
| TCATATTGATCTTGAACCAT+TGG | + | chr3_4:72943154-72943173 | None:intergenic | 30.0% | |
| TGACAACAACTGCAAAAATA+CGG | + | chr3_4:72943343-72943362 | None:intergenic | 30.0% | |
| TTTGAAAAGCTTGAGATTCA+TGG | - | chr3_4:72943492-72943511 | Msa0520390:CDS | 30.0% | |
| TGTAGTACTATACTAAGACT+TGG | + | chr3_4:72943603-72943622 | None:intergenic | 30.0% | |
| GTCTCATAAAATTCAGACAT+TGG | + | chr3_4:72943802-72943821 | None:intergenic | 30.0% | |
| ! | AAAATAATTCAGGTTTGTCC+TGG | - | chr3_4:72943875-72943894 | Msa0520390:CDS | 30.0% |
| ! | TCTTTTCATTCATGTGACAT+TGG | - | chr3_4:72943982-72944001 | Msa0520390:CDS | 30.0% |
| ! | CTTTTCATTCATGTGACATT+GGG | - | chr3_4:72943983-72944002 | Msa0520390:CDS | 30.0% |
| TCTTATGTTTCCAGATGAAT+TGG | - | chr3_4:72944021-72944040 | Msa0520390:CDS | 30.0% | |
| TTCCTCTGTTCAATACAATA+GGG | + | chr3_4:72944194-72944213 | None:intergenic | 30.0% | |
| TTTCCTCTGTTCAATACAAT+AGG | + | chr3_4:72944195-72944214 | None:intergenic | 30.0% | |
| ! | AAAGACTTTTACCTTTCTGT+GGG | + | chr3_4:72944357-72944376 | None:intergenic | 30.0% |
| TGTGTCTTAAAATTAACGAC+AGG | - | chr3_4:72944434-72944453 | Msa0520390:CDS | 30.0% | |
| GTAATTTGATCTGCTTCAAA+AGG | + | chr3_4:72944467-72944486 | None:intergenic | 30.0% | |
| ! | GTTTAATCATTTCGGTTTGA+AGG | + | chr3_4:72944554-72944573 | None:intergenic | 30.0% |
| ACCGAAATGATTAAACATTG+TGG | - | chr3_4:72944558-72944577 | Msa0520390:CDS | 30.0% | |
| GAAATGATTAAACATTGTGG+TGG | - | chr3_4:72944561-72944580 | Msa0520390:CDS | 30.0% | |
| ! | ATAAATCTGCTAGTGTTGTT+GGG | + | chr3_4:72942682-72942701 | None:intergenic | 30.0% |
| ! | CAAGTCCATAGTAATTTTCT+TGG | + | chr3_4:72942835-72942854 | None:intergenic | 30.0% |
| CAAGAAAATTACTATGGACT+TGG | - | chr3_4:72942833-72942852 | Msa0520390:intron | 30.0% | |
| !! | GTTGGTGGTAGTAATAATAA+TGG | - | chr3_4:72942860-72942879 | Msa0520390:intron | 30.0% |
| GGCAATACATTGGAATTAAA+TGG | + | chr3_4:72942893-72942912 | None:intergenic | 30.0% | |
| ! | TGAAACATTTTCTGTTCCAA+TGG | - | chr3_4:72943135-72943154 | Msa0520390:intron | 30.0% |
| TCATATTGATCTTGAACCAT+TGG | + | chr3_4:72943154-72943173 | None:intergenic | 30.0% | |
| TGACAACAACTGCAAAAATA+CGG | + | chr3_4:72943343-72943362 | None:intergenic | 30.0% | |
| TTTGAAAAGCTTGAGATTCA+TGG | - | chr3_4:72943492-72943511 | Msa0520390:CDS | 30.0% | |
| TGTAGTACTATACTAAGACT+TGG | + | chr3_4:72943603-72943622 | None:intergenic | 30.0% | |
| GTCTCATAAAATTCAGACAT+TGG | + | chr3_4:72943802-72943821 | None:intergenic | 30.0% | |
| ! | AAAATAATTCAGGTTTGTCC+TGG | - | chr3_4:72943875-72943894 | Msa0520390:CDS | 30.0% |
| ! | TCTTTTCATTCATGTGACAT+TGG | - | chr3_4:72943982-72944001 | Msa0520390:CDS | 30.0% |
| ! | CTTTTCATTCATGTGACATT+GGG | - | chr3_4:72943983-72944002 | Msa0520390:CDS | 30.0% |
| TCTTATGTTTCCAGATGAAT+TGG | - | chr3_4:72944021-72944040 | Msa0520390:CDS | 30.0% | |
| TTCCTCTGTTCAATACAATA+GGG | + | chr3_4:72944194-72944213 | None:intergenic | 30.0% | |
| TTTCCTCTGTTCAATACAAT+AGG | + | chr3_4:72944195-72944214 | None:intergenic | 30.0% | |
| ! | AAAGACTTTTACCTTTCTGT+GGG | + | chr3_4:72944357-72944376 | None:intergenic | 30.0% |
| TGTGTCTTAAAATTAACGAC+AGG | - | chr3_4:72944434-72944453 | Msa0520390:CDS | 30.0% | |
| GTAATTTGATCTGCTTCAAA+AGG | + | chr3_4:72944467-72944486 | None:intergenic | 30.0% | |
| ! | GTTTAATCATTTCGGTTTGA+AGG | + | chr3_4:72944554-72944573 | None:intergenic | 30.0% |
| ACCGAAATGATTAAACATTG+TGG | - | chr3_4:72944558-72944577 | Msa0520390:CDS | 30.0% | |
| GAAATGATTAAACATTGTGG+TGG | - | chr3_4:72944561-72944580 | Msa0520390:CDS | 30.0% | |
| ATTGAAGAAAGTTGGGTCAA+CGG | + | chr3_4:72942651-72942670 | None:intergenic | 35.0% | |
| GATAAATCTGCTAGTGTTGT+TGG | + | chr3_4:72942683-72942702 | None:intergenic | 35.0% | |
| !! | AACTCCATGAAGATTTTGGT+GGG | + | chr3_4:72942768-72942787 | None:intergenic | 35.0% |
| ! | TTCCAACTCCATGAAGATTT+TGG | + | chr3_4:72942772-72942791 | None:intergenic | 35.0% |
| ! | TAGTAATTTTCTTGGGATGG+TGG | + | chr3_4:72942827-72942846 | None:intergenic | 35.0% |
| ! | CCATAGTAATTTTCTTGGGA+TGG | + | chr3_4:72942830-72942849 | None:intergenic | 35.0% |
| CCATCCCAAGAAAATTACTA+TGG | - | chr3_4:72942827-72942846 | Msa0520390:intron | 35.0% | |
| TACTATGGACTTGGAATAGT+TGG | - | chr3_4:72942842-72942861 | Msa0520390:intron | 35.0% | |
| ATTCTGTTGTGGCAATACAT+TGG | + | chr3_4:72942903-72942922 | None:intergenic | 35.0% | |
| CATCATATTCAACAACTGCA+TGG | - | chr3_4:72942977-72942996 | Msa0520390:CDS | 35.0% | |
| ! | TGGAATAAATAGCCTTGAAG+TGG | - | chr3_4:72943198-72943217 | Msa0520390:intron | 35.0% |
| ! | ATAAATAGCCTTGAAGTGGA+TGG | - | chr3_4:72943202-72943221 | Msa0520390:intron | 35.0% |
| !! | TTCGGTTTGGTTCAACAAAA+CGG | + | chr3_4:72943284-72943303 | None:intergenic | 35.0% |
| ACAACAACTGCAAAAATACG+GGG | + | chr3_4:72943341-72943360 | None:intergenic | 35.0% | |
| GACAACAACTGCAAAAATAC+GGG | + | chr3_4:72943342-72943361 | None:intergenic | 35.0% | |
| AGAGAAATCATACACACTGA+TGG | - | chr3_4:72943370-72943389 | Msa0520390:CDS | 35.0% | |
| AAAAGCTTGAGATTCATGGA+AGG | - | chr3_4:72943496-72943515 | Msa0520390:CDS | 35.0% | |
| ACCATCAGATACCTGTTAAT+GGG | - | chr3_4:72943544-72943563 | Msa0520390:intron | 35.0% | |
| ! | TTTTATGAGACTCTTTGCAC+TGG | - | chr3_4:72943811-72943830 | Msa0520390:intron | 35.0% |
| TATGTTTCCAGATGAATTGG+TGG | - | chr3_4:72944024-72944043 | Msa0520390:CDS | 35.0% | |
| TACCCTATTGTATTGAACAG+AGG | - | chr3_4:72944189-72944208 | Msa0520390:CDS | 35.0% | |
| ! | CAAGTTTTCTTGAGAACTGT+TGG | + | chr3_4:72944308-72944327 | None:intergenic | 35.0% |
| AAGAAAACTTGTCGTAAAGC+AGG | - | chr3_4:72944317-72944336 | Msa0520390:CDS | 35.0% | |
| AGAAAACTTGTCGTAAAGCA+GGG | - | chr3_4:72944318-72944337 | Msa0520390:CDS | 35.0% | |
| ! | AAGACTTTTACCTTTCTGTG+GGG | + | chr3_4:72944356-72944375 | None:intergenic | 35.0% |
| ! | GAAAGACTTTTACCTTTCTG+TGG | + | chr3_4:72944358-72944377 | None:intergenic | 35.0% |
| TTACTAGCAAATCAATGGGA+AGG | - | chr3_4:72944483-72944502 | Msa0520390:CDS | 35.0% | |
| ATTGAAGAAAGTTGGGTCAA+CGG | + | chr3_4:72942651-72942670 | None:intergenic | 35.0% | |
| GATAAATCTGCTAGTGTTGT+TGG | + | chr3_4:72942683-72942702 | None:intergenic | 35.0% | |
| !! | AACTCCATGAAGATTTTGGT+GGG | + | chr3_4:72942768-72942787 | None:intergenic | 35.0% |
| ! | TTCCAACTCCATGAAGATTT+TGG | + | chr3_4:72942772-72942791 | None:intergenic | 35.0% |
| ! | TAGTAATTTTCTTGGGATGG+TGG | + | chr3_4:72942827-72942846 | None:intergenic | 35.0% |
| ! | CCATAGTAATTTTCTTGGGA+TGG | + | chr3_4:72942830-72942849 | None:intergenic | 35.0% |
| CCATCCCAAGAAAATTACTA+TGG | - | chr3_4:72942827-72942846 | Msa0520390:intron | 35.0% | |
| TACTATGGACTTGGAATAGT+TGG | - | chr3_4:72942842-72942861 | Msa0520390:intron | 35.0% | |
| ATTCTGTTGTGGCAATACAT+TGG | + | chr3_4:72942903-72942922 | None:intergenic | 35.0% | |
| CATCATATTCAACAACTGCA+TGG | - | chr3_4:72942977-72942996 | Msa0520390:CDS | 35.0% | |
| ! | TGGAATAAATAGCCTTGAAG+TGG | - | chr3_4:72943198-72943217 | Msa0520390:intron | 35.0% |
| ! | ATAAATAGCCTTGAAGTGGA+TGG | - | chr3_4:72943202-72943221 | Msa0520390:intron | 35.0% |
| !! | TTCGGTTTGGTTCAACAAAA+CGG | + | chr3_4:72943284-72943303 | None:intergenic | 35.0% |
| ACAACAACTGCAAAAATACG+GGG | + | chr3_4:72943341-72943360 | None:intergenic | 35.0% | |
| GACAACAACTGCAAAAATAC+GGG | + | chr3_4:72943342-72943361 | None:intergenic | 35.0% | |
| AGAGAAATCATACACACTGA+TGG | - | chr3_4:72943370-72943389 | Msa0520390:CDS | 35.0% | |
| AAAAGCTTGAGATTCATGGA+AGG | - | chr3_4:72943496-72943515 | Msa0520390:CDS | 35.0% | |
| ACCATCAGATACCTGTTAAT+GGG | - | chr3_4:72943544-72943563 | Msa0520390:intron | 35.0% | |
| ! | TTTTATGAGACTCTTTGCAC+TGG | - | chr3_4:72943811-72943830 | Msa0520390:intron | 35.0% |
| TATGTTTCCAGATGAATTGG+TGG | - | chr3_4:72944024-72944043 | Msa0520390:CDS | 35.0% | |
| TACCCTATTGTATTGAACAG+AGG | - | chr3_4:72944189-72944208 | Msa0520390:CDS | 35.0% | |
| ! | CAAGTTTTCTTGAGAACTGT+TGG | + | chr3_4:72944308-72944327 | None:intergenic | 35.0% |
| AAGAAAACTTGTCGTAAAGC+AGG | - | chr3_4:72944317-72944336 | Msa0520390:CDS | 35.0% | |
| AGAAAACTTGTCGTAAAGCA+GGG | - | chr3_4:72944318-72944337 | Msa0520390:CDS | 35.0% | |
| ! | AAGACTTTTACCTTTCTGTG+GGG | + | chr3_4:72944356-72944375 | None:intergenic | 35.0% |
| ! | GAAAGACTTTTACCTTTCTG+TGG | + | chr3_4:72944358-72944377 | None:intergenic | 35.0% |
| TTACTAGCAAATCAATGGGA+AGG | - | chr3_4:72944483-72944502 | Msa0520390:CDS | 35.0% | |
| !! | ACTCCATGAAGATTTTGGTG+GGG | + | chr3_4:72942767-72942786 | None:intergenic | 40.0% |
| ! | CAACTCCATGAAGATTTTGG+TGG | + | chr3_4:72942769-72942788 | None:intergenic | 40.0% |
| CACCAAAATCTTCATGGAGT+TGG | - | chr3_4:72942767-72942786 | Msa0520390:intron | 40.0% | |
| TATGGACTTGGAATAGTTGG+TGG | - | chr3_4:72942845-72942864 | Msa0520390:intron | 40.0% | |
| TTACCACTCTGATTCTGTTG+TGG | + | chr3_4:72942914-72942933 | None:intergenic | 40.0% | |
| CATATTCAACAACTGCATGG+TGG | - | chr3_4:72942980-72942999 | Msa0520390:CDS | 40.0% | |
| CCTGACCTTGTTGAATATCA+TGG | + | chr3_4:72943027-72943046 | None:intergenic | 40.0% | |
| CCATGATATTCAACAAGGTC+AGG | - | chr3_4:72943024-72943043 | Msa0520390:intron | 40.0% | |
| GATATTCAACAAGGTCAGGA+TGG | - | chr3_4:72943028-72943047 | Msa0520390:intron | 40.0% | |
| CACCATGATGTACAACAACA+TGG | - | chr3_4:72943091-72943110 | Msa0520390:intron | 40.0% | |
| GTCCATGTTGTTGTACATCA+TGG | + | chr3_4:72943096-72943115 | None:intergenic | 40.0% | |
| GATGTACAACAACATGGACA+TGG | - | chr3_4:72943097-72943116 | Msa0520390:intron | 40.0% | |
| ATGAACTACCATCCACTTCA+AGG | + | chr3_4:72943213-72943232 | None:intergenic | 40.0% | |
| AAAACGGGAATCTGAATTGC+AGG | + | chr3_4:72943268-72943287 | None:intergenic | 40.0% | |
| !! | TCGGTTTGGTTCAACAAAAC+GGG | + | chr3_4:72943283-72943302 | None:intergenic | 40.0% |
| CAAAAATACGGGGTTACTGT+GGG | + | chr3_4:72943331-72943350 | None:intergenic | 40.0% | |
| CACCATCAGATACCTGTTAA+TGG | - | chr3_4:72943543-72943562 | Msa0520390:intron | 40.0% | |
| CCATCAGATACCTGTTAATG+GGG | - | chr3_4:72943545-72943564 | Msa0520390:intron | 40.0% | |
| ! | AGTTTTTGTGGGAAAAGCCT+TGG | - | chr3_4:72943706-72943725 | Msa0520390:CDS | 40.0% |
| !!! | TTTTTTGGCACAGTACTGTG+TGG | - | chr3_4:72943741-72943760 | Msa0520390:intron | 40.0% |
| GACATTGGGTTAAGTTTGAG+TGG | - | chr3_4:72943997-72944016 | Msa0520390:CDS | 40.0% | |
| CAAGAGCAAATGGGTGATAA+TGG | - | chr3_4:72944049-72944068 | Msa0520390:CDS | 40.0% | |
| ! | TGATCTGCTGCTTCATCAAT+AGG | + | chr3_4:72944266-72944285 | None:intergenic | 40.0% |
| !! | ACTCCATGAAGATTTTGGTG+GGG | + | chr3_4:72942767-72942786 | None:intergenic | 40.0% |
| ! | CAACTCCATGAAGATTTTGG+TGG | + | chr3_4:72942769-72942788 | None:intergenic | 40.0% |
| CACCAAAATCTTCATGGAGT+TGG | - | chr3_4:72942767-72942786 | Msa0520390:intron | 40.0% | |
| TATGGACTTGGAATAGTTGG+TGG | - | chr3_4:72942845-72942864 | Msa0520390:intron | 40.0% | |
| TTACCACTCTGATTCTGTTG+TGG | + | chr3_4:72942914-72942933 | None:intergenic | 40.0% | |
| CATATTCAACAACTGCATGG+TGG | - | chr3_4:72942980-72942999 | Msa0520390:CDS | 40.0% | |
| CCTGACCTTGTTGAATATCA+TGG | + | chr3_4:72943027-72943046 | None:intergenic | 40.0% | |
| CCATGATATTCAACAAGGTC+AGG | - | chr3_4:72943024-72943043 | Msa0520390:intron | 40.0% | |
| GATATTCAACAAGGTCAGGA+TGG | - | chr3_4:72943028-72943047 | Msa0520390:intron | 40.0% | |
| CACCATGATGTACAACAACA+TGG | - | chr3_4:72943091-72943110 | Msa0520390:intron | 40.0% | |
| GTCCATGTTGTTGTACATCA+TGG | + | chr3_4:72943096-72943115 | None:intergenic | 40.0% | |
| GATGTACAACAACATGGACA+TGG | - | chr3_4:72943097-72943116 | Msa0520390:intron | 40.0% | |
| ATGAACTACCATCCACTTCA+AGG | + | chr3_4:72943213-72943232 | None:intergenic | 40.0% | |
| AAAACGGGAATCTGAATTGC+AGG | + | chr3_4:72943268-72943287 | None:intergenic | 40.0% | |
| !! | TCGGTTTGGTTCAACAAAAC+GGG | + | chr3_4:72943283-72943302 | None:intergenic | 40.0% |
| CAAAAATACGGGGTTACTGT+GGG | + | chr3_4:72943331-72943350 | None:intergenic | 40.0% | |
| CACCATCAGATACCTGTTAA+TGG | - | chr3_4:72943543-72943562 | Msa0520390:intron | 40.0% | |
| CCATCAGATACCTGTTAATG+GGG | - | chr3_4:72943545-72943564 | Msa0520390:intron | 40.0% | |
| ! | AGTTTTTGTGGGAAAAGCCT+TGG | - | chr3_4:72943706-72943725 | Msa0520390:CDS | 40.0% |
| !!! | TTTTTTGGCACAGTACTGTG+TGG | - | chr3_4:72943741-72943760 | Msa0520390:intron | 40.0% |
| GACATTGGGTTAAGTTTGAG+TGG | - | chr3_4:72943997-72944016 | Msa0520390:CDS | 40.0% | |
| CAAGAGCAAATGGGTGATAA+TGG | - | chr3_4:72944049-72944068 | Msa0520390:CDS | 40.0% | |
| ! | TGATCTGCTGCTTCATCAAT+AGG | + | chr3_4:72944266-72944285 | None:intergenic | 40.0% |
| !!! | ATTTTCTTGGGATGGTGGAG+TGG | + | chr3_4:72942822-72942841 | None:intergenic | 45.0% |
| TTGCCACAACAGAATCAGAG+TGG | - | chr3_4:72942908-72942927 | Msa0520390:CDS | 45.0% | |
| CAACAACATGGACATGGACA+TGG | - | chr3_4:72943103-72943122 | Msa0520390:intron | 45.0% | |
| TGTTGAACCAAACCGAACTG+CGG | - | chr3_4:72943287-72943306 | Msa0520390:intron | 45.0% | |
| TTGATTAAGTGCCCGCAGTT+CGG | + | chr3_4:72943302-72943321 | None:intergenic | 45.0% | |
| AACTGCGGGCACTTAATCAA+TGG | - | chr3_4:72943302-72943321 | Msa0520390:intron | 45.0% | |
| GCAAAAATACGGGGTTACTG+TGG | + | chr3_4:72943332-72943351 | None:intergenic | 45.0% | |
| GCTTGAGATTCATGGAAGGT+TGG | - | chr3_4:72943500-72943519 | Msa0520390:CDS | 45.0% | |
| CCCCATTAACAGGTATCTGA+TGG | + | chr3_4:72943548-72943567 | None:intergenic | 45.0% | |
| TGTGTGGAACGTCATTTAGC+AGG | - | chr3_4:72943757-72943776 | Msa0520390:intron | 45.0% | |
| TGAGACTCTTTGCACTGGAT+TGG | - | chr3_4:72943816-72943835 | Msa0520390:intron | 45.0% | |
| ! | CTCTTTGCACTGGATTGGAT+TGG | - | chr3_4:72943821-72943840 | Msa0520390:intron | 45.0% |
| GTTTGTCCTGGAAATCACGA+CGG | - | chr3_4:72943887-72943906 | Msa0520390:CDS | 45.0% | |
| TCTTGCTCCACCAATTCATC+TGG | + | chr3_4:72944034-72944053 | None:intergenic | 45.0% | |
| ATTGGTGGAGCAAGAGCAAA+TGG | - | chr3_4:72944039-72944058 | Msa0520390:CDS | 45.0% | |
| TTGGTGGAGCAAGAGCAAAT+GGG | - | chr3_4:72944040-72944059 | Msa0520390:CDS | 45.0% | |
| !! | ACTTGTTCTGAGAGGTTCCT+AGG | + | chr3_4:72944079-72944098 | None:intergenic | 45.0% |
| AGCAAATCAATGGGAAGGAC+AGG | - | chr3_4:72944488-72944507 | Msa0520390:CDS | 45.0% | |
| AAGGACAGGATACAGAGACA+AGG | - | chr3_4:72944502-72944521 | Msa0520390:CDS | 45.0% | |
| AGGACAGGATACAGAGACAA+GGG | - | chr3_4:72944503-72944522 | Msa0520390:CDS | 45.0% | |
| !!! | ATTTTCTTGGGATGGTGGAG+TGG | + | chr3_4:72942822-72942841 | None:intergenic | 45.0% |
| TTGCCACAACAGAATCAGAG+TGG | - | chr3_4:72942908-72942927 | Msa0520390:CDS | 45.0% | |
| CAACAACATGGACATGGACA+TGG | - | chr3_4:72943103-72943122 | Msa0520390:intron | 45.0% | |
| TGTTGAACCAAACCGAACTG+CGG | - | chr3_4:72943287-72943306 | Msa0520390:intron | 45.0% | |
| TTGATTAAGTGCCCGCAGTT+CGG | + | chr3_4:72943302-72943321 | None:intergenic | 45.0% | |
| AACTGCGGGCACTTAATCAA+TGG | - | chr3_4:72943302-72943321 | Msa0520390:intron | 45.0% | |
| GCAAAAATACGGGGTTACTG+TGG | + | chr3_4:72943332-72943351 | None:intergenic | 45.0% | |
| GCTTGAGATTCATGGAAGGT+TGG | - | chr3_4:72943500-72943519 | Msa0520390:CDS | 45.0% | |
| CCCCATTAACAGGTATCTGA+TGG | + | chr3_4:72943548-72943567 | None:intergenic | 45.0% | |
| TGTGTGGAACGTCATTTAGC+AGG | - | chr3_4:72943757-72943776 | Msa0520390:intron | 45.0% | |
| TGAGACTCTTTGCACTGGAT+TGG | - | chr3_4:72943816-72943835 | Msa0520390:intron | 45.0% | |
| ! | CTCTTTGCACTGGATTGGAT+TGG | - | chr3_4:72943821-72943840 | Msa0520390:intron | 45.0% |
| GTTTGTCCTGGAAATCACGA+CGG | - | chr3_4:72943887-72943906 | Msa0520390:CDS | 45.0% | |
| TCTTGCTCCACCAATTCATC+TGG | + | chr3_4:72944034-72944053 | None:intergenic | 45.0% | |
| ATTGGTGGAGCAAGAGCAAA+TGG | - | chr3_4:72944039-72944058 | Msa0520390:CDS | 45.0% | |
| TTGGTGGAGCAAGAGCAAAT+GGG | - | chr3_4:72944040-72944059 | Msa0520390:CDS | 45.0% | |
| !! | ACTTGTTCTGAGAGGTTCCT+AGG | + | chr3_4:72944079-72944098 | None:intergenic | 45.0% |
| AGCAAATCAATGGGAAGGAC+AGG | - | chr3_4:72944488-72944507 | Msa0520390:CDS | 45.0% | |
| AAGGACAGGATACAGAGACA+AGG | - | chr3_4:72944502-72944521 | Msa0520390:CDS | 45.0% | |
| AGGACAGGATACAGAGACAA+GGG | - | chr3_4:72944503-72944522 | Msa0520390:CDS | 45.0% | |
| !! | TATTTATTTGAATTATTTAT+AGG | - | chr3_4:72943462-72943481 | Msa0520390:CDS | 5.0% |
| !! | TATTTATTTGAATTATTTAT+AGG | - | chr3_4:72943462-72943481 | Msa0520390:CDS | 5.0% |
| ! | GTTTGTTGGGACAGTGCAGT+GGG | + | chr3_4:72942734-72942753 | None:intergenic | 50.0% |
| !! | AGTTTGTTGGGACAGTGCAG+TGG | + | chr3_4:72942735-72942754 | None:intergenic | 50.0% |
| CTGTCCCAACAAACTCAGCA+TGG | - | chr3_4:72942740-72942759 | Msa0520390:CDS | 50.0% | |
| ! | GGGTCCATGCTGAGTTTGTT+GGG | + | chr3_4:72942747-72942766 | None:intergenic | 50.0% |
| GGACCCCACCAAAATCTTCA+TGG | - | chr3_4:72942761-72942780 | Msa0520390:CDS | 50.0% | |
| GTTGAACCAAACCGAACTGC+GGG | - | chr3_4:72943288-72943307 | Msa0520390:intron | 50.0% | |
| AAATACGGGGTTACTGTGGG+TGG | + | chr3_4:72943328-72943347 | None:intergenic | 50.0% | |
| ! | CCTTTTCCGTCGTGATTTCC+AGG | + | chr3_4:72943896-72943915 | None:intergenic | 50.0% |
| CCTGGAAATCACGACGGAAA+AGG | - | chr3_4:72943893-72943912 | Msa0520390:CDS | 50.0% | |
| !! | TGGGTGATAATGGAACGCCT+AGG | - | chr3_4:72944059-72944078 | Msa0520390:CDS | 50.0% |
| GTAAAGCAGGGTTACCCAGA+TGG | - | chr3_4:72944330-72944349 | Msa0520390:CDS | 50.0% | |
| AGGATACAGAGACAAGGGCA+AGG | - | chr3_4:72944508-72944527 | Msa0520390:CDS | 50.0% | |
| AGACAAGGGCAAGGACTGAA+GGG | - | chr3_4:72944517-72944536 | Msa0520390:CDS | 50.0% | |
| ! | GTTTGTTGGGACAGTGCAGT+GGG | + | chr3_4:72942734-72942753 | None:intergenic | 50.0% |
| !! | AGTTTGTTGGGACAGTGCAG+TGG | + | chr3_4:72942735-72942754 | None:intergenic | 50.0% |
| CTGTCCCAACAAACTCAGCA+TGG | - | chr3_4:72942740-72942759 | Msa0520390:CDS | 50.0% | |
| ! | GGGTCCATGCTGAGTTTGTT+GGG | + | chr3_4:72942747-72942766 | None:intergenic | 50.0% |
| GGACCCCACCAAAATCTTCA+TGG | - | chr3_4:72942761-72942780 | Msa0520390:CDS | 50.0% | |
| GTTGAACCAAACCGAACTGC+GGG | - | chr3_4:72943288-72943307 | Msa0520390:intron | 50.0% | |
| AAATACGGGGTTACTGTGGG+TGG | + | chr3_4:72943328-72943347 | None:intergenic | 50.0% | |
| ! | CCTTTTCCGTCGTGATTTCC+AGG | + | chr3_4:72943896-72943915 | None:intergenic | 50.0% |
| CCTGGAAATCACGACGGAAA+AGG | - | chr3_4:72943893-72943912 | Msa0520390:CDS | 50.0% | |
| !! | TGGGTGATAATGGAACGCCT+AGG | - | chr3_4:72944059-72944078 | Msa0520390:CDS | 50.0% |
| GTAAAGCAGGGTTACCCAGA+TGG | - | chr3_4:72944330-72944349 | Msa0520390:CDS | 50.0% | |
| AGGATACAGAGACAAGGGCA+AGG | - | chr3_4:72944508-72944527 | Msa0520390:CDS | 50.0% | |
| AGACAAGGGCAAGGACTGAA+GGG | - | chr3_4:72944517-72944536 | Msa0520390:CDS | 50.0% | |
| GGGGTCCATGCTGAGTTTGT+TGG | + | chr3_4:72942748-72942767 | None:intergenic | 55.0% | |
| TAAGTGCCCGCAGTTCGGTT+TGG | + | chr3_4:72943297-72943316 | None:intergenic | 55.0% | |
| ACTGATGGGGCCCCATTAAC+AGG | + | chr3_4:72943558-72943577 | None:intergenic | 55.0% | |
| ACCTTTCTGTGGGGCCATCT+GGG | + | chr3_4:72944347-72944366 | None:intergenic | 55.0% | |
| TACCTTTCTGTGGGGCCATC+TGG | + | chr3_4:72944348-72944367 | None:intergenic | 55.0% | |
| GAGACAAGGGCAAGGACTGA+AGG | - | chr3_4:72944516-72944535 | Msa0520390:CDS | 55.0% | |
| GACAAGGGCAAGGACTGAAG+GGG | - | chr3_4:72944518-72944537 | Msa0520390:CDS | 55.0% | |
| GCGATGTCATACAACGCGGT+TGG | + | chr3_4:72944594-72944613 | None:intergenic | 55.0% | |
| GGGGTCCATGCTGAGTTTGT+TGG | + | chr3_4:72942748-72942767 | None:intergenic | 55.0% | |
| TAAGTGCCCGCAGTTCGGTT+TGG | + | chr3_4:72943297-72943316 | None:intergenic | 55.0% | |
| ACTGATGGGGCCCCATTAAC+AGG | + | chr3_4:72943558-72943577 | None:intergenic | 55.0% | |
| ACCTTTCTGTGGGGCCATCT+GGG | + | chr3_4:72944347-72944366 | None:intergenic | 55.0% | |
| TACCTTTCTGTGGGGCCATC+TGG | + | chr3_4:72944348-72944367 | None:intergenic | 55.0% | |
| GAGACAAGGGCAAGGACTGA+AGG | - | chr3_4:72944516-72944535 | Msa0520390:CDS | 55.0% | |
| GACAAGGGCAAGGACTGAAG+GGG | - | chr3_4:72944518-72944537 | Msa0520390:CDS | 55.0% | |
| GCGATGTCATACAACGCGGT+TGG | + | chr3_4:72944594-72944613 | None:intergenic | 55.0% | |
| ACCCAGATGGCCCCACAGAA+AGG | - | chr3_4:72944343-72944362 | Msa0520390:CDS | 60.0% | |
| GGCGGCGATGTCATACAACG+CGG | + | chr3_4:72944598-72944617 | None:intergenic | 60.0% | |
| ACCCAGATGGCCCCACAGAA+AGG | - | chr3_4:72944343-72944362 | Msa0520390:CDS | 60.0% | |
| GGCGGCGATGTCATACAACG+CGG | + | chr3_4:72944598-72944617 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 72942608 | 72944632 | 72942608 | ID=Msa0520390;Name=Msa0520390 |
| chr3_4 | mRNA | 72942608 | 72944632 | 72942608 | ID=Msa0520390-mRNA-1;Parent=Msa0520390;Name=Msa0520390-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|6|0|488 |
| chr3_4 | exon | 72943849 | 72944632 | 72943849 | ID=Msa0520390-mRNA-1:exon:20282;Parent=Msa0520390-mRNA-1 |
| chr3_4 | exon | 72943648 | 72943756 | 72943648 | ID=Msa0520390-mRNA-1:exon:20281;Parent=Msa0520390-mRNA-1 |
| chr3_4 | exon | 72943354 | 72943532 | 72943354 | ID=Msa0520390-mRNA-1:exon:20280;Parent=Msa0520390-mRNA-1 |
| chr3_4 | exon | 72943144 | 72943205 | 72943144 | ID=Msa0520390-mRNA-1:exon:20279;Parent=Msa0520390-mRNA-1 |
| chr3_4 | exon | 72942876 | 72943031 | 72942876 | ID=Msa0520390-mRNA-1:exon:20278;Parent=Msa0520390-mRNA-1 |
| chr3_4 | exon | 72942608 | 72942784 | 72942608 | ID=Msa0520390-mRNA-1:exon:20277;Parent=Msa0520390-mRNA-1 |
| chr3_4 | CDS | 72943849 | 72944632 | 72943849 | ID=Msa0520390-mRNA-1:cds;Parent=Msa0520390-mRNA-1 |
| chr3_4 | CDS | 72943648 | 72943756 | 72943648 | ID=Msa0520390-mRNA-1:cds;Parent=Msa0520390-mRNA-1 |
| chr3_4 | CDS | 72943354 | 72943532 | 72943354 | ID=Msa0520390-mRNA-1:cds;Parent=Msa0520390-mRNA-1 |
| chr3_4 | CDS | 72943144 | 72943205 | 72943144 | ID=Msa0520390-mRNA-1:cds;Parent=Msa0520390-mRNA-1 |
| chr3_4 | CDS | 72942876 | 72943031 | 72942876 | ID=Msa0520390-mRNA-1:cds;Parent=Msa0520390-mRNA-1 |
| chr3_4 | CDS | 72942608 | 72942784 | 72942608 | ID=Msa0520390-mRNA-1:cds;Parent=Msa0520390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
