AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0520930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520930 MtrunA17_Chr3g0136961 90.136 294 28 1 1 293 1 294 0.0 552
Msa0520930 MtrunA17_Chr1g0150281 58.446 296 93 8 1 286 1 276 8.31e-106 309
Msa0520930 MtrunA17_Chr2g0333851 43.682 277 116 6 29 286 58 313 2.60e-67 212
Msa0520930 MtrunA17_Chr4g0001361 41.875 320 135 10 6 286 7 314 3.86e-60 194
Msa0520930 MtrunA17_Chr1g0150271 41.899 179 69 4 123 290 86 240 2.01e-37 133
Msa0520930 MtrunA17_Chr3g0099641 30.709 254 115 6 1 196 59 309 4.28e-27 109
Msa0520930 MtrunA17_Chr4g0051181 47.748 111 48 3 85 195 200 300 1.01e-26 108
Msa0520930 MtrunA17_Chr7g0270831 35.266 207 84 6 123 285 201 401 3.75e-25 103
Msa0520930 MtrunA17_Chr4g0060271 51.111 90 39 2 107 196 229 313 8.89e-25 103
Msa0520930 MtrunA17_Chr2g0288871 57.500 80 29 2 116 195 288 362 9.39e-25 103
Msa0520930 MtrunA17_Chr4g0075201 32.836 201 100 5 30 195 124 324 1.15e-24 103
Msa0520930 MtrunA17_Chr2g0322391 55.844 77 32 1 120 196 333 407 1.26e-23 100
Msa0520930 MtrunA17_Chr7g0216891 64.407 59 21 0 137 195 218 276 1.89e-23 100
Msa0520930 MtrunA17_Chr2g0302391 46.465 99 48 2 120 215 195 291 1.52e-22 96.7
Msa0520930 MtrunA17_Chr5g0445311 62.712 59 21 1 137 195 363 420 1.10e-21 94.7
Msa0520930 MtrunA17_Chr5g0445311 48.387 62 30 2 139 200 201 260 5.10e-11 63.2
Msa0520930 MtrunA17_Chr3g0101131 62.712 59 21 1 137 195 414 471 1.98e-21 94.0
Msa0520930 MtrunA17_Chr3g0101131 44.286 70 37 2 139 208 244 311 1.18e-11 65.1
Msa0520930 MtrunA17_Chr5g0401821 39.098 133 60 4 70 196 140 257 3.57e-21 90.5
Msa0520930 MtrunA17_Chr4g0025051 51.351 74 36 0 122 195 319 392 3.76e-21 93.2
Msa0520930 MtrunA17_Chr5g0447701 53.333 75 32 2 122 196 238 309 5.91e-21 91.7
Msa0520930 MtrunA17_Chr5g0418191 51.807 83 34 4 113 195 300 376 9.50e-21 91.7
Msa0520930 MtrunA17_Chr5g0418191 56.140 57 23 2 139 195 152 206 3.50e-14 72.4
Msa0520930 MtrunA17_Chr4g0042831 42.478 113 56 5 111 220 256 362 2.38e-20 90.1
Msa0520930 MtrunA17_Chr4g0042831 41.860 86 43 3 125 210 137 215 1.01e-11 64.7
Msa0520930 MtrunA17_Chr4g0053281 58.621 58 24 0 139 196 267 324 3.63e-20 89.0
Msa0520930 MtrunA17_Chr4g0025061 49.333 75 38 0 121 195 343 417 4.72e-20 90.1
Msa0520930 MtrunA17_Chr5g0443131 56.667 60 25 1 136 195 155 213 6.15e-20 87.8
Msa0520930 MtrunA17_Chr1g0194481 55.882 68 27 2 136 203 156 220 6.70e-20 88.2
Msa0520930 MtrunA17_Chr7g0270191 44.792 96 48 3 112 207 121 211 1.03e-19 87.0
Msa0520930 MtrunA17_Chr1g0184691 56.897 58 25 0 139 196 294 351 1.69e-19 87.4
Msa0520930 MtrunA17_Chr7g0218081 54.795 73 30 3 123 195 397 466 2.29e-19 87.8
Msa0520930 MtrunA17_Chr7g0218081 42.857 91 49 3 139 229 229 316 2.29e-14 73.2
Msa0520930 MtrunA17_Chr7g0238921 34.503 171 91 6 72 224 41 208 2.98e-19 86.3
Msa0520930 MtrunA17_Chr4g0051881 55.932 59 25 1 137 195 177 234 3.34e-19 86.3
Msa0520930 MtrunA17_Chr3g0106491 51.316 76 34 3 120 195 349 421 3.43e-19 87.4
Msa0520930 MtrunA17_Chr3g0106491 40.964 83 38 3 113 195 182 253 9.03e-14 71.2
Msa0520930 MtrunA17_Chr1g0147881 56.140 57 25 0 139 195 263 319 4.23e-19 85.9
Msa0520930 MtrunA17_Chr1g0188941 54.237 59 26 1 137 195 50 107 4.50e-19 80.9
Msa0520930 MtrunA17_Chr1g0150801 54.237 59 26 1 137 195 101 158 7.87e-19 81.6
Msa0520930 MtrunA17_Chr5g0432161 57.627 59 24 1 137 195 420 477 8.23e-19 86.3
Msa0520930 MtrunA17_Chr5g0432161 52.632 57 25 2 139 195 245 299 3.94e-14 72.4
Msa0520930 MtrunA17_Chr4g0071521 55.932 59 26 0 139 197 246 304 1.45e-18 84.3
Msa0520930 MtrunA17_Chr2g0294231 44.565 92 43 3 136 220 201 291 1.55e-18 84.7
Msa0520930 MtrunA17_Chr5g0418781 55.000 60 26 1 136 195 122 180 1.63e-18 83.6
Msa0520930 MtrunA17_Chr7g0263531 55.932 59 25 1 137 195 360 417 2.69e-18 84.3
Msa0520930 MtrunA17_Chr7g0263531 49.351 77 35 3 123 199 176 248 3.85e-16 78.2
Msa0520930 MtrunA17_Chr7g0243891 55.932 59 25 1 137 195 373 430 3.24e-18 84.7
Msa0520930 MtrunA17_Chr7g0243891 47.143 70 29 3 132 195 204 271 1.14e-12 68.2
Msa0520930 MtrunA17_Chr3g0079691 57.627 59 24 1 137 195 494 551 3.82e-18 84.7
Msa0520930 MtrunA17_Chr3g0079691 53.448 58 25 2 138 195 280 335 1.54e-12 67.8
Msa0520930 MtrunA17_Chr4g0004911 55.932 59 25 1 137 195 335 392 4.47e-18 84.0
Msa0520930 MtrunA17_Chr4g0004911 50.000 58 28 1 138 195 184 240 4.85e-14 72.0
Msa0520930 MtrunA17_Chr7g0249301 42.157 102 50 4 94 195 256 348 7.03e-18 82.8
Msa0520930 MtrunA17_Chr7g0249301 50.000 60 28 2 137 196 61 118 7.23e-12 65.1
Msa0520930 MtrunA17_Chr8g0379461 53.448 58 27 0 139 196 77 134 8.73e-18 80.9
Msa0520930 MtrunA17_Chr7g0224801 54.237 59 26 1 137 195 92 149 1.92e-17 78.2
Msa0520930 MtrunA17_Chr7g0249311 42.000 100 52 3 99 195 352 448 2.05e-17 82.4
Msa0520930 MtrunA17_Chr7g0249311 52.542 59 26 2 138 196 179 235 3.86e-12 66.6
Msa0520930 MtrunA17_Chr8g0383351 44.872 78 38 2 119 196 145 217 3.20e-17 79.0
Msa0520930 MtrunA17_Chr3g0129361 48.718 78 35 3 137 213 143 216 5.12e-17 78.2
Msa0520930 MtrunA17_Chr7g0228941 49.123 57 29 0 139 195 53 109 5.56e-17 75.5
Msa0520930 MtrunA17_Chr8g0383251 52.542 59 27 1 137 195 107 164 8.41e-17 76.6
Msa0520930 MtrunA17_Chr8g0386241 38.542 96 47 3 100 195 76 159 1.02e-16 76.6
Msa0520930 MtrunA17_Chr4g0068541 51.667 60 28 1 136 195 206 264 1.42e-16 79.3
Msa0520930 MtrunA17_Chr2g0319961 47.143 70 37 0 139 208 81 150 2.22e-16 77.0
Msa0520930 MtrunA17_Chr2g0284321 43.056 72 41 0 139 210 36 107 2.55e-16 76.3
Msa0520930 MtrunA17_Chr3g0129321 54.237 59 26 1 137 195 117 174 4.09e-16 75.5
Msa0520930 MtrunA17_Chr8g0335811 51.667 60 28 1 137 196 153 211 4.11e-16 75.9
Msa0520930 MtrunA17_Chr2g0293481 45.205 73 40 0 139 211 268 340 1.51e-15 76.6
Msa0520930 MtrunA17_Chr4g0024391 28.090 178 115 5 22 194 116 285 2.36e-15 75.9
Msa0520930 MtrunA17_Chr3g0139021 49.123 57 29 0 139 195 315 371 2.37e-15 75.9
Msa0520930 MtrunA17_Chr4g0074001 50.877 57 27 1 139 195 360 415 2.42e-15 75.9
Msa0520930 MtrunA17_Chr7g0270051 50.877 57 28 0 139 195 54 110 3.04e-15 73.9
Msa0520930 MtrunA17_Chr2g0289181 49.153 59 30 0 138 196 14 72 3.69e-15 73.2
Msa0520930 MtrunA17_Chr8g0348311 49.123 57 29 0 139 195 156 212 4.53e-15 74.3
Msa0520930 MtrunA17_Chr8g0387501 39.326 89 50 1 139 227 130 214 6.08e-15 73.2
Msa0520930 MtrunA17_Chr5g0432071 40.230 87 46 4 139 225 105 185 1.56e-14 71.2
Msa0520930 MtrunA17_Chr1g0202461 36.842 95 57 1 122 216 248 339 5.93e-14 71.6
Msa0520930 MtrunA17_Chr7g0248691 47.368 57 30 0 139 195 155 211 6.84e-14 70.9
Msa0520930 MtrunA17_Chr7g0248721 54.237 59 25 2 137 195 140 196 7.71e-14 69.3
Msa0520930 MtrunA17_Chr1g0189391 42.667 75 39 3 123 196 84 155 3.98e-13 68.6
Msa0520930 MtrunA17_Chr7g0275531 39.394 99 48 3 111 199 85 181 7.16e-13 67.8
Msa0520930 MtrunA17_Chr8g0387981 50.000 58 27 1 138 193 132 189 3.53e-12 66.2
Msa0520930 MtrunA17_Chr3g0126391 49.153 59 28 1 137 193 132 190 3.96e-12 65.9
Msa0520930 MtrunA17_Chr5g0447711 44.615 65 35 1 131 195 223 286 5.03e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520930 AT1G80840.1 45.151 299 132 10 6 285 9 294 1.54e-71 223
Msa0520930 AT2G25000.2 43.396 265 101 7 29 286 1 223 3.67e-60 191
Msa0520930 AT2G25000.4 43.396 265 101 7 29 286 1 223 3.67e-60 191
Msa0520930 AT2G25000.3 43.396 265 101 7 29 286 23 245 8.52e-60 191
Msa0520930 AT2G25000.1 43.396 265 101 7 29 286 44 266 1.66e-59 191
Msa0520930 AT4G31800.1 38.679 318 139 6 6 286 7 305 1.54e-58 190
Msa0520930 AT4G31800.2 50.299 167 64 1 120 286 93 240 8.13e-51 168
Msa0520930 AT4G31800.3 39.130 207 89 4 6 175 7 213 9.86e-33 120
Msa0520930 AT1G62300.1 33.962 212 92 6 30 195 160 369 4.85e-27 110
Msa0520930 AT1G68150.1 43.066 137 62 5 115 240 205 336 2.29e-26 107
Msa0520930 AT4G22070.4 57.895 76 30 1 120 195 281 354 6.66e-25 104
Msa0520930 AT4G22070.3 57.895 76 30 1 120 195 281 354 6.66e-25 104
Msa0520930 AT4G22070.2 57.895 76 30 1 120 195 281 354 6.66e-25 104
Msa0520930 AT4G22070.1 57.895 76 30 1 120 195 281 354 6.66e-25 104
Msa0520930 AT4G04450.2 56.579 76 31 1 120 195 182 255 1.92e-24 102
Msa0520930 AT4G01720.1 32.821 195 96 4 33 195 105 296 3.97e-24 102
Msa0520930 AT4G04450.1 56.579 76 31 1 120 195 276 349 4.57e-24 102
Msa0520930 AT5G15130.2 63.333 60 22 0 137 196 184 243 1.26e-23 100
Msa0520930 AT5G15130.1 63.333 60 22 0 137 196 226 285 1.44e-23 100
Msa0520930 AT1G18860.1 62.712 59 22 0 137 195 238 296 7.13e-22 95.9
Msa0520930 AT1G13960.2 54.217 83 32 4 113 195 236 312 8.23e-22 94.4
Msa0520930 AT1G13960.2 56.140 57 23 2 139 195 77 131 1.24e-14 73.9
Msa0520930 AT5G26170.1 56.667 60 25 1 137 196 112 170 1.46e-21 89.7
Msa0520930 AT1G13960.1 54.217 83 32 4 113 195 389 465 1.86e-21 94.4
Msa0520930 AT1G13960.1 56.140 57 23 2 139 195 230 284 1.59e-14 73.9
Msa0520930 AT5G07100.2 42.742 124 57 7 77 195 83 197 6.43e-21 89.0
Msa0520930 AT5G07100.2 47.541 61 31 1 139 199 25 84 1.19e-12 66.2
Msa0520930 AT5G07100.4 42.742 124 57 7 77 195 83 197 6.43e-21 89.0
Msa0520930 AT5G07100.4 47.541 61 31 1 139 199 25 84 1.19e-12 66.2
Msa0520930 AT5G07100.5 42.742 124 57 7 77 195 83 197 6.43e-21 89.0
Msa0520930 AT5G07100.5 47.541 61 31 1 139 199 25 84 1.19e-12 66.2
Msa0520930 AT5G07100.3 42.742 124 57 7 77 195 83 197 6.43e-21 89.0
Msa0520930 AT5G07100.3 47.541 61 31 1 139 199 25 84 1.19e-12 66.2
Msa0520930 AT4G26640.5 61.017 59 22 1 137 195 204 261 1.43e-20 90.9
Msa0520930 AT4G26640.5 45.070 71 37 2 130 200 27 95 4.08e-11 63.5
Msa0520930 AT4G26640.6 61.017 59 22 1 137 195 204 261 1.43e-20 90.9
Msa0520930 AT4G26640.6 45.070 71 37 2 130 200 27 95 4.08e-11 63.5
Msa0520930 AT4G26640.4 61.017 59 22 1 137 195 204 261 1.43e-20 90.9
Msa0520930 AT4G26640.4 45.070 71 37 2 130 200 27 95 4.08e-11 63.5
Msa0520930 AT4G26640.3 61.017 59 22 1 137 195 204 261 1.43e-20 90.9
Msa0520930 AT4G26640.3 45.070 71 37 2 130 200 27 95 4.08e-11 63.5
Msa0520930 AT5G07100.1 41.463 123 60 6 77 195 176 290 1.90e-20 89.7
Msa0520930 AT5G07100.1 32.812 128 85 1 72 199 51 177 8.00e-13 68.2
Msa0520930 AT4G26640.1 61.017 59 22 1 137 195 308 365 2.12e-20 91.3
Msa0520930 AT4G26640.1 45.070 71 37 2 130 200 131 199 4.17e-11 63.5
Msa0520930 AT2G03340.1 53.012 83 33 4 113 195 395 471 2.18e-20 91.3
Msa0520930 AT2G03340.1 48.000 75 37 2 121 195 233 305 5.68e-15 75.5
Msa0520930 AT4G26640.2 61.017 59 22 1 137 195 380 437 2.27e-20 91.3
Msa0520930 AT4G26640.2 45.070 71 37 2 130 200 203 271 3.65e-11 63.9
Msa0520930 AT4G26640.7 61.017 59 22 1 137 195 340 397 2.42e-20 91.3
Msa0520930 AT4G26640.7 45.070 71 37 2 130 200 163 231 3.99e-11 63.9
Msa0520930 AT2G04880.2 61.017 59 22 1 137 195 282 339 3.74e-20 90.5
Msa0520930 AT2G04880.1 61.017 59 22 1 137 195 306 363 3.93e-20 90.5
Msa0520930 AT1G29860.1 56.667 60 25 1 136 195 134 192 4.70e-20 88.2
Msa0520930 AT5G49520.1 51.389 72 30 2 124 195 211 277 5.69e-20 89.4
Msa0520930 AT5G46350.1 38.931 131 62 6 119 249 169 281 1.89e-19 87.0
Msa0520930 AT2G23320.1 55.172 58 26 0 139 196 241 298 2.31e-19 86.7
Msa0520930 AT1G69810.2 42.697 89 48 2 108 195 117 203 2.82e-19 86.7
Msa0520930 AT2G47260.1 48.810 84 40 2 112 195 150 230 2.90e-19 86.7
Msa0520930 AT1G69810.1 42.697 89 48 2 108 195 175 261 2.99e-19 87.4
Msa0520930 AT4G31550.2 48.571 70 36 0 139 208 246 315 3.18e-19 86.7
Msa0520930 AT4G31550.1 48.571 70 36 0 139 208 247 316 3.19e-19 86.7
Msa0520930 AT5G56270.1 52.632 76 33 3 120 195 471 543 3.43e-19 88.2
Msa0520930 AT5G56270.1 47.761 67 33 2 129 195 264 328 2.40e-12 67.8
Msa0520930 AT2G30590.1 57.895 57 24 0 139 195 314 370 3.59e-19 87.0
Msa0520930 AT5G28650.1 58.621 58 24 0 139 196 263 320 3.80e-19 86.3
Msa0520930 AT4G18170.1 53.333 60 27 1 136 195 170 228 3.96e-19 86.3
Msa0520930 AT1G69310.4 48.052 77 34 3 119 195 133 203 5.48e-19 85.1
Msa0520930 AT1G69310.2 48.052 77 34 3 119 195 133 203 5.48e-19 85.1
Msa0520930 AT1G69310.1 48.052 77 34 3 119 195 133 203 5.48e-19 85.1
Msa0520930 AT1G64000.1 55.932 59 25 1 137 195 113 170 7.21e-19 83.2
Msa0520930 AT3G01970.1 54.688 64 28 1 137 200 64 126 8.13e-19 81.6
Msa0520930 AT2G38470.1 57.627 59 24 1 137 195 361 418 1.30e-18 86.3
Msa0520930 AT2G38470.1 55.172 58 24 2 138 195 184 239 1.11e-14 74.3
Msa0520930 AT3G04670.1 55.172 58 26 0 139 196 263 320 1.66e-18 84.7
Msa0520930 AT4G24240.1 53.448 58 27 0 139 196 282 339 3.75e-18 84.0
Msa0520930 AT3G01080.1 49.398 83 36 4 113 195 286 362 3.87e-18 84.3
Msa0520930 AT3G01080.1 39.080 87 51 2 139 225 168 252 1.24e-11 65.1
Msa0520930 AT3G62340.1 55.738 61 26 1 135 195 115 174 3.95e-18 82.8
Msa0520930 AT3G01080.2 49.398 83 36 4 113 195 324 400 4.11e-18 84.3
Msa0520930 AT3G01080.2 39.080 87 51 2 139 225 206 290 1.55e-11 65.1
Msa0520930 AT5G41570.1 55.932 59 25 1 137 195 97 154 4.28e-18 80.5
Msa0520930 AT5G13080.1 54.237 59 26 1 137 195 66 123 4.45e-18 79.7
Msa0520930 AT2G24570.1 53.125 64 28 1 139 202 244 305 5.80e-18 82.8
Msa0520930 AT2G30250.1 59.649 57 22 1 139 195 329 384 8.28e-18 83.2
Msa0520930 AT2G30250.1 46.154 65 31 3 139 203 167 227 5.98e-11 63.2
Msa0520930 AT5G52830.1 42.697 89 50 1 139 227 166 253 4.28e-17 80.9
Msa0520930 AT1G29280.1 50.877 57 28 0 139 195 75 131 6.47e-17 79.0
Msa0520930 AT2G21900.1 41.304 92 53 1 104 195 75 165 6.84e-17 77.8
Msa0520930 AT5G64810.1 50.847 59 28 1 137 195 109 166 8.41e-17 77.4
Msa0520930 AT4G30935.1 39.785 93 48 2 139 231 332 416 2.00e-16 79.7
Msa0520930 AT1G55600.1 57.895 57 23 1 139 195 308 363 2.12e-16 79.3
Msa0520930 AT2G46130.1 48.750 80 35 4 116 195 13 86 4.96e-16 72.8
Msa0520930 AT4G39410.1 45.946 74 37 2 137 208 222 294 4.96e-16 77.4
Msa0520930 AT2G44745.1 52.542 59 27 1 137 195 144 201 4.97e-16 75.9
Msa0520930 AT4G26440.1 54.237 59 26 1 137 195 371 428 1.03e-15 77.8
Msa0520930 AT4G26440.1 48.387 62 30 2 139 200 179 238 1.68e-11 65.1
Msa0520930 AT2G37260.2 50.847 59 28 1 137 195 266 323 1.71e-15 76.3
Msa0520930 AT2G37260.2 56.897 58 23 2 139 196 84 139 9.63e-15 73.9
Msa0520930 AT2G37260.3 50.847 59 28 1 137 195 268 325 1.75e-15 76.3
Msa0520930 AT2G37260.3 56.897 58 23 2 139 196 86 141 9.85e-15 73.9
Msa0520930 AT3G58710.1 52.632 57 27 0 139 195 72 128 1.84e-15 75.1
Msa0520930 AT2G37260.1 50.847 59 28 1 137 195 348 405 1.85e-15 76.6
Msa0520930 AT2G37260.1 56.897 58 23 2 139 196 166 221 9.62e-15 74.3
Msa0520930 AT2G34830.1 47.692 65 34 0 131 195 208 272 1.86e-15 76.6
Msa0520930 AT3G58710.2 52.632 57 27 0 139 195 71 127 1.93e-15 75.1
Msa0520930 AT2G34830.2 47.692 65 34 0 131 195 217 281 2.06e-15 76.3
Msa0520930 AT1G30650.1 33.636 110 63 1 96 195 165 274 2.89e-15 75.9
Msa0520930 AT4G01250.1 36.441 118 63 3 139 249 129 241 5.68e-15 74.3
Msa0520930 AT1G69310.3 46.753 77 31 4 119 195 133 199 6.56e-15 73.9
Msa0520930 AT5G43290.1 46.154 65 34 1 131 195 107 170 1.06e-14 73.2
Msa0520930 AT4G23550.1 38.961 77 47 0 137 213 139 215 9.01e-14 70.9
Msa0520930 AT5G45050.1 49.123 57 29 0 139 195 1181 1237 1.70e-13 71.2
Msa0520930 AT5G45050.2 49.123 57 29 0 139 195 1153 1209 1.74e-13 71.2
Msa0520930 AT5G45050.4 49.123 57 29 0 139 195 1042 1098 1.94e-13 71.2
Msa0520930 AT2G46400.1 43.836 73 37 2 123 193 91 161 1.00e-12 67.8
Msa0520930 AT2G46130.2 47.500 80 32 5 116 195 13 82 4.87e-12 62.0
Msa0520930 AT3G01080.3 50.820 61 28 2 139 199 206 264 1.46e-11 64.3
Msa0520930 AT5G45260.1 40.260 77 44 1 139 213 1209 1285 3.97e-11 64.3
Msa0520930 AT5G24110.1 28.188 149 89 3 95 241 70 202 5.47e-11 62.8
Msa0520930 AT4G12020.11 34.559 136 67 7 132 267 462 575 7.56e-11 63.2
Msa0520930 AT4G12020.6 34.559 136 67 7 132 267 462 575 8.85e-11 63.2
Msa0520930 AT4G12020.8 34.559 136 67 7 132 267 462 575 8.85e-11 63.2
Msa0520930 AT4G12020.7 34.559 136 67 7 132 267 462 575 9.53e-11 63.2
Msa0520930 AT4G12020.1 34.559 136 67 7 132 267 462 575 9.53e-11 63.2
Msa0520930 AT4G12020.9 34.559 136 67 7 132 267 462 575 9.53e-11 63.2
Msa0520930 AT4G12020.3 34.559 136 67 7 132 267 462 575 9.58e-11 63.2
Msa0520930 AT4G12020.2 34.559 136 67 7 132 267 462 575 9.85e-11 63.2

Find 69 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACTTGCCACTGCCATTTC+TGG 0.147288 3_4:-73483208 Msa0520930:CDS
GCCTTTCTCTTTCGCGATAT+TGG 0.191286 3_4:+73485738 None:intergenic
GCAAGTGCTGTTGCGAAATT+AGG 0.254403 3_4:+73483223 None:intergenic
CCTCATCCTCACCAATTAAT+TGG 0.285074 3_4:-73483369 Msa0520930:CDS
CTTGGTCCAGCCAAGAAAAT+TGG 0.286759 3_4:-73483320 Msa0520930:CDS
TCAGGTTGCTGATCAGGTTT+TGG 0.288511 3_4:-73485898 Msa0520930:intron
TGAGCTGTACGCCAATTAAT+TGG 0.305961 3_4:+73483358 None:intergenic
GAACTAGTGAGTGACATTTC+AGG 0.307165 3_4:+73483436 None:intergenic
CATTTCTGGAAGAATAATTC+TGG 0.326631 3_4:-73483194 Msa0520930:CDS
ATGAATTCAGGTTGCTGATC+AGG 0.334261 3_4:-73485904 Msa0520930:intron
CAGAATTATTCTTCCAGAAA+TGG 0.354382 3_4:+73483195 None:intergenic
TTCAAGTGCTCCTTTGCTCC+TGG 0.357212 3_4:-73485354 Msa0520930:CDS
GGATATCAGTGGAGAAAATA+TGG 0.364647 3_4:-73485417 Msa0520930:CDS
CCTGAGAAGGGAGAGTGTTT+AGG 0.366217 3_4:+73486043 None:intergenic
GCACATGTGGTTCAGTTTCT+CGG 0.370673 3_4:+73485833 None:intergenic
TATATCCTAACCGCATTAAC+AGG 0.387690 3_4:+73486015 None:intergenic
ACCAATATCGCGAAAGAGAA+AGG 0.387719 3_4:-73485739 Msa0520930:CDS
GTGTTGAAAATTGTATCAAT+AGG 0.392499 3_4:-73485710 Msa0520930:CDS
GAAAATTGTATCAATAGGTT+TGG 0.438963 3_4:-73485705 Msa0520930:CDS
CCTAAACACTCTCCCTTCTC+AGG 0.448947 3_4:-73486043 Msa0520930:CDS
GTCTAAGTAGTGAGAATAAG+AGG 0.450271 3_4:-73485860 Msa0520930:CDS
CTAGAGATAATCCCTCTCCT+AGG 0.467386 3_4:-73485383 Msa0520930:CDS
GCTGGAACTAAATTATATGT+AGG 0.476216 3_4:+73483394 None:intergenic
CTGGAACTAAATTATATGTA+GGG 0.478747 3_4:+73483395 None:intergenic
TGGAAGAATAATTCTGGATG+TGG 0.479580 3_4:-73483188 Msa0520930:CDS
TCTGTTGAACTAATAACTGC+TGG 0.493414 3_4:+73483269 None:intergenic
ACAAGAACCTTGGAAATTCT+CGG 0.493452 3_4:+73485612 None:intergenic
AGAACTTACTAAGCTGGCAT+TGG 0.495787 3_4:+73485575 None:intergenic
CCAATTAATTGGTGAGGATG+AGG 0.495942 3_4:+73483369 None:intergenic
TGTATGGCTATATTCGATAT+CGG 0.499721 3_4:-73483113 Msa0520930:three_prime_UTR
CACAGGGCAGCCAGGAGCAA+AGG 0.503671 3_4:+73485344 None:intergenic
AATTGTAGAACTTACTAAGC+TGG 0.507761 3_4:+73485569 None:intergenic
TATGTGGTCACTAATATGCT+CGG 0.512756 3_4:+73483490 None:intergenic
ATGTAGGGGTTGTTTCACTT+TGG 0.521708 3_4:+73483410 None:intergenic
CACATGTATTGAACTGAACA+AGG 0.527264 3_4:-73483146 Msa0520930:three_prime_UTR
ATTGGTGAGGATGAGGATGC+TGG 0.529139 3_4:+73483376 None:intergenic
TCAAGCTTCAGAGCTTGACT+TGG 0.532387 3_4:-73483338 Msa0520930:CDS
TTAACAGGTGTGTCCTGAGA+AGG 0.537637 3_4:+73486030 None:intergenic
TATCTCCTCCTCAGTAGTAA+TGG 0.543613 3_4:+73485659 None:intergenic
GCAGTTATTAGTTCAACAGA+TGG 0.557437 3_4:-73483266 Msa0520930:CDS
ATGTGGTCACTAATATGCTC+GGG 0.561198 3_4:+73483491 None:intergenic
GTTGTGCTCTCCTTCGTATG+TGG 0.572822 3_4:+73483474 None:intergenic
GAGCACTTGAAGTAAGCCCT+AGG 0.576521 3_4:+73485366 None:intergenic
CAGTATAATTGTCGCACATG+TGG 0.579804 3_4:+73485820 None:intergenic
ATCTGTACGCACAAGAACCT+TGG 0.586094 3_4:+73485602 None:intergenic
TAGAGATAATCCCTCTCCTA+GGG 0.588394 3_4:-73485382 Msa0520930:CDS
CTGTGTCAAGTTCTTCCACA+TGG 0.593096 3_4:-73486094 Msa0520930:exon
TATTCTTCCAGAAATGGCAG+TGG 0.593871 3_4:+73483201 None:intergenic
TTGAAGTAAGCCCTAGGAGA+GGG 0.594565 3_4:+73485372 None:intergenic
TTTCAGGTTGGTGATGCGCA+TGG 0.595445 3_4:+73483452 None:intergenic
TAACAGGTGTGTCCTGAGAA+GGG 0.601977 3_4:+73486031 None:intergenic
GTATTGAAGTATGTGAAGGA+TGG 0.607747 3_4:-73485438 Msa0520930:intron
ATACATGTGTGAATTCACTT+CGG 0.612284 3_4:+73483160 None:intergenic
GACCTCGCCGAGAATTTCCA+AGG 0.615724 3_4:-73485619 Msa0520930:CDS
TCAGGACACACCTGTTAATG+CGG 0.630882 3_4:-73486025 Msa0520930:intron
TTGGGTATTGAAGTATGTGA+AGG 0.631029 3_4:-73485442 Msa0520930:intron
CCACATGGAACCAACGTGTG+TGG 0.633718 3_4:-73486079 Msa0520930:exon
CTTGAAGTAAGCCCTAGGAG+AGG 0.642278 3_4:+73485371 None:intergenic
ATGTGAAGGATGGATATCAG+TGG 0.648222 3_4:-73485428 Msa0520930:CDS
TGGAACTAAATTATATGTAG+GGG 0.651480 3_4:+73483396 None:intergenic
CAGCACCATTACTACTGAGG+AGG 0.656419 3_4:-73485664 Msa0520930:CDS
AACCTTGGAAATTCTCGGCG+AGG 0.657509 3_4:+73485617 None:intergenic
TGTACGCCAATTAATTGGTG+AGG 0.660265 3_4:+73483363 None:intergenic
CCACACACGTTGGTTCCATG+TGG 0.660564 3_4:+73486079 None:intergenic
TAGTGAGTGACATTTCAGGT+TGG 0.685861 3_4:+73483440 None:intergenic
CATGTGGAAGAACTTGACAC+AGG 0.707976 3_4:+73486095 None:intergenic
GAGCAGCACCATTACTACTG+AGG 0.711173 3_4:-73485667 Msa0520930:CDS
ATATTAGTGACCACATACGA+AGG 0.729115 3_4:-73483484 Msa0520930:CDS
AGAGAAGTATCCACACACGT+TGG 0.751057 3_4:+73486069 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAGAAAAAAATAGATTT+TGG - chr3_4:73484268-73484287 Msa0520930:intron 10.0%
!! AATATAATAACAATATAGAT+TGG - chr3_4:73484674-73484693 Msa0520930:intron 10.0%
!!! ATATAACATTTTTTATACTT+AGG + chr3_4:73484909-73484928 None:intergenic 10.0%
!! AAAAAATTATATTAATTGTG+AGG - chr3_4:73485366-73485385 Msa0520930:CDS 10.0%
!! TTTATATAAAATAATGAGAA+AGG - chr3_4:73485441-73485460 Msa0520930:intron 10.0%
!! AATAATAATTAACATAAAGA+GGG + chr3_4:73485695-73485714 None:intergenic 10.0%
!! TAATAATAATTAACATAAAG+AGG + chr3_4:73485696-73485715 None:intergenic 10.0%
!! TCTTTATGTTAATTATTATT+AGG - chr3_4:73485695-73485714 Msa0520930:CDS 10.0%
!!! CATAAGTTAATTTTTGAATA+TGG + chr3_4:73483307-73483326 None:intergenic 15.0%
!! AAAAATTAACTTATGAATTC+AGG - chr3_4:73483312-73483331 Msa0520930:CDS 15.0%
!! ATAATAAAGATATTAGTGTT+TGG - chr3_4:73483733-73483752 Msa0520930:intron 15.0%
!! TGTTAAAATAATTAAGAGAT+TGG + chr3_4:73483945-73483964 None:intergenic 15.0%
!!! AAATGATTTTTTTAGCAAAA+TGG - chr3_4:73484328-73484347 Msa0520930:intron 15.0%
!! AATGTTATATATCAAATGAT+TGG - chr3_4:73484919-73484938 Msa0520930:intron 15.0%
!!! ATGATTTTGAATTTTATTAG+TGG - chr3_4:73485048-73485067 Msa0520930:intron 15.0%
!!! TGATTTTGAATTTTATTAGT+GGG - chr3_4:73485049-73485068 Msa0520930:intron 15.0%
!! CAAAAAACATTTAATCAATA+AGG - chr3_4:73485227-73485246 Msa0520930:intron 15.0%
!! ATATGGTATGTTATAATTCA+AGG + chr3_4:73483290-73483309 None:intergenic 20.0%
!!! TGTTGTCTTGATTTAATTTT+TGG - chr3_4:73483704-73483723 Msa0520930:intron 20.0%
!!! TCTATTTTTTTCTTAATGCA+AGG + chr3_4:73484265-73484284 None:intergenic 20.0%
!!! TGAAATAGATTTTCATTTTG+AGG - chr3_4:73484301-73484320 Msa0520930:intron 20.0%
!! AAAAAAAATCCAAAACAAAC+AGG - chr3_4:73484426-73484445 Msa0520930:intron 20.0%
!! GTTGGAAATATATAGAAAAA+TGG - chr3_4:73484567-73484586 Msa0520930:intron 20.0%
!!! GATTTTGAATTTTATTAGTG+GGG - chr3_4:73485050-73485069 Msa0520930:intron 20.0%
!!! TGGTTACAAAATTTTATTAG+TGG - chr3_4:73485084-73485103 Msa0520930:intron 20.0%
!!! TGGTTTTGAAATTTTATTAG+TGG - chr3_4:73485104-73485123 Msa0520930:intron 20.0%
!!! TGGTTACAAAATTTTATTAG+TGG - chr3_4:73485084-73485103 Msa0520930:intron 20.0%
!!! TTTTGCTTATTAGAAAACTA+AGG + chr3_4:73485212-73485231 None:intergenic 20.0%
! TGTTATAATTCAAGGAAAAG+AGG + chr3_4:73483282-73483301 None:intergenic 25.0%
! GTGTTGAAAATTGTATCAAT+AGG - chr3_4:73483518-73483537 Msa0520930:intron 25.0%
! GAAAATTGTATCAATAGGTT+TGG - chr3_4:73483523-73483542 Msa0520930:intron 25.0%
!!! TGAGATGTTGAATTTGTTTT+TGG - chr3_4:73483767-73483786 Msa0520930:intron 25.0%
!!! GAGATGTTGAATTTGTTTTT+GGG - chr3_4:73483768-73483787 Msa0520930:intron 25.0%
!!! TAAATACCTTCTTTTTCACA+GGG + chr3_4:73483903-73483922 None:intergenic 25.0%
!!! TTAAATACCTTCTTTTTCAC+AGG + chr3_4:73483904-73483923 None:intergenic 25.0%
! TAAACATTGTCAACCAAATA+AGG - chr3_4:73484039-73484058 Msa0520930:intron 25.0%
!!! AAAATAACTAAGGCTTTGTT+TGG - chr3_4:73484508-73484527 Msa0520930:intron 25.0%
!!! AAATAACTAAGGCTTTGTTT+GGG - chr3_4:73484509-73484528 Msa0520930:intron 25.0%
!! ATAAAAAATCCCCCTTATTT+GGG + chr3_4:73484767-73484786 None:intergenic 25.0%
! AATAAAAAATCCCCCTTATT+TGG + chr3_4:73484768-73484787 None:intergenic 25.0%
!!! TTTATACTTAGGCTTTGTTT+GGG + chr3_4:73484898-73484917 None:intergenic 25.0%
!!! TTTTATACTTAGGCTTTGTT+TGG + chr3_4:73484899-73484918 None:intergenic 25.0%
!!! CGAGATTGTAATTTTAACAA+AGG + chr3_4:73485534-73485553 None:intergenic 25.0%
! TAAAGCTCAATGTATTCTAT+TGG + chr3_4:73485640-73485659 None:intergenic 25.0%
! TGGAACTAAATTATATGTAG+GGG + chr3_4:73485835-73485854 None:intergenic 25.0%
! CTGGAACTAAATTATATGTA+GGG + chr3_4:73485836-73485855 None:intergenic 25.0%
! GATACAATTTTCAACACTCT+CGG + chr3_4:73483515-73483534 None:intergenic 30.0%
AATTGTAGAACTTACTAAGC+TGG + chr3_4:73483662-73483681 None:intergenic 30.0%
! CAAAATTCCACGAAACATTT+TGG + chr3_4:73483988-73484007 None:intergenic 30.0%
! CAAAATGTTTCGTGGAATTT+TGG - chr3_4:73483986-73484005 Msa0520930:intron 30.0%
ACCAAATAAGGAGAATTCTT+TGG - chr3_4:73484051-73484070 Msa0520930:intron 30.0%
ACCAAAGAATTCTCCTTATT+TGG + chr3_4:73484055-73484074 None:intergenic 30.0%
! TTCTTTGGTACACTTTTAGT+TGG - chr3_4:73484066-73484085 Msa0520930:intron 30.0%
!! TCTTTGGTACACTTTTAGTT+GGG - chr3_4:73484067-73484086 Msa0520930:intron 30.0%
TTGGGTACGAGTTTAATTAA+GGG - chr3_4:73484085-73484104 Msa0520930:intron 30.0%
GAACTCAAAAATTGTATTGG+GGG + chr3_4:73484743-73484762 None:intergenic 30.0%
GGAACTCAAAAATTGTATTG+GGG + chr3_4:73484744-73484763 None:intergenic 30.0%
GGGAACTCAAAAATTGTATT+GGG + chr3_4:73484745-73484764 None:intergenic 30.0%
! TAAAAAATCCCCCTTATTTG+GGG + chr3_4:73484766-73484785 None:intergenic 30.0%
TGGAAGAAATAGAAGACATT+GGG + chr3_4:73484825-73484844 None:intergenic 30.0%
TCAATCAAACTTCATTCTCT+AGG - chr3_4:73484957-73484976 Msa0520930:intron 30.0%
TTCGTCATAGACCAAATTAT+TGG + chr3_4:73485020-73485039 None:intergenic 30.0%
!!! TTAGTGGGGTTTCTTTTTTT+TGG - chr3_4:73485064-73485083 Msa0520930:intron 30.0%
ATTCATGAAAACTTATCTCG+TGG - chr3_4:73485299-73485318 Msa0520930:intron 30.0%
TTACAATCTCGAATTCTTGT+TGG - chr3_4:73485543-73485562 Msa0520930:intron 30.0%
GCTGGAACTAAATTATATGT+AGG + chr3_4:73485837-73485856 None:intergenic 30.0%
! TCATCAACTACCAATTTTCT+TGG + chr3_4:73485921-73485940 None:intergenic 30.0%
CAGAATTATTCTTCCAGAAA+TGG + chr3_4:73486036-73486055 None:intergenic 30.0%
! CATTTCTGGAAGAATAATTC+TGG - chr3_4:73486034-73486053 Msa0520930:CDS 30.0%
ATACATGTGTGAATTCACTT+CGG + chr3_4:73486071-73486090 None:intergenic 30.0%
!!! ACAAGGTTTTGTTATGTGTA+TGG - chr3_4:73486099-73486118 Msa0520930:five_prime_UTR 30.0%
TGTATGGCTATATTCGATAT+CGG - chr3_4:73486115-73486134 Msa0520930:five_prime_UTR 30.0%
TATATCCTAACCGCATTAAC+AGG + chr3_4:73483216-73483235 None:intergenic 35.0%
GTCTAAGTAGTGAGAATAAG+AGG - chr3_4:73483368-73483387 Msa0520930:CDS 35.0%
ACAAGAACCTTGGAAATTCT+CGG + chr3_4:73483619-73483638 None:intergenic 35.0%
!! TTGGGTATTGAAGTATGTGA+AGG - chr3_4:73483786-73483805 Msa0520930:intron 35.0%
GTATTGAAGTATGTGAAGGA+TGG - chr3_4:73483790-73483809 Msa0520930:intron 35.0%
GGATATCAGTGGAGAAAATA+TGG - chr3_4:73483811-73483830 Msa0520930:intron 35.0%
TTAGTCACCAAAATGTTTCG+TGG - chr3_4:73483978-73483997 Msa0520930:intron 35.0%
GTTGGGTACGAGTTTAATTA+AGG - chr3_4:73484084-73484103 Msa0520930:intron 35.0%
TCAAAAATTGTATTGGGGGA+GGG + chr3_4:73484739-73484758 None:intergenic 35.0%
GGGGAACTCAAAAATTGTAT+TGG + chr3_4:73484746-73484765 None:intergenic 35.0%
!!! TTTTTGAGTTCCCCCAAATA+AGG - chr3_4:73484752-73484771 Msa0520930:intron 35.0%
!!! TTTTGAGTTCCCCCAAATAA+GGG - chr3_4:73484753-73484772 Msa0520930:intron 35.0%
! AAAAAATCCCCCTTATTTGG+GGG + chr3_4:73484765-73484784 None:intergenic 35.0%
AAGAAATAGAAGACATTGGG+AGG + chr3_4:73484822-73484841 None:intergenic 35.0%
GTGGAAGAAATAGAAGACAT+TGG + chr3_4:73484826-73484845 None:intergenic 35.0%
GGAAAAAAGGAAAGAACAAG+TGG + chr3_4:73484845-73484864 None:intergenic 35.0%
TTGGAACCAACGGTATTATA+TGG + chr3_4:73485001-73485020 None:intergenic 35.0%
!! TACCGTTGGTTCCAATAATT+TGG - chr3_4:73485006-73485025 Msa0520930:intron 35.0%
GACCAAATTATTGGAACCAA+CGG + chr3_4:73485011-73485030 None:intergenic 35.0%
CTAACATGTCAAGTAGTACT+TGG - chr3_4:73485571-73485590 Msa0520930:intron 35.0%
TATGTGGTCACTAATATGCT+CGG + chr3_4:73485741-73485760 None:intergenic 35.0%
ATATTAGTGACCACATACGA+AGG - chr3_4:73485744-73485763 Msa0520930:CDS 35.0%
TCTGTTGAACTAATAACTGC+TGG + chr3_4:73485962-73485981 None:intergenic 35.0%
GCAGTTATTAGTTCAACAGA+TGG - chr3_4:73485962-73485981 Msa0520930:intron 35.0%
TGGAAGAATAATTCTGGATG+TGG - chr3_4:73486040-73486059 Msa0520930:CDS 35.0%
CACATGTATTGAACTGAACA+AGG - chr3_4:73486082-73486101 Msa0520930:exon 35.0%
GAACTTGACACAGGCAAAAA+TGG + chr3_4:73483127-73483146 None:intergenic 40.0%
!! ATGAATTCAGGTTGCTGATC+AGG - chr3_4:73483324-73483343 Msa0520930:CDS 40.0%
CAGTATAATTGTCGCACATG+TGG + chr3_4:73483411-73483430 None:intergenic 40.0%
ACCAATATCGCGAAAGAGAA+AGG - chr3_4:73483489-73483508 Msa0520930:CDS 40.0%
TATCTCCTCCTCAGTAGTAA+TGG + chr3_4:73483572-73483591 None:intergenic 40.0%
AGAACTTACTAAGCTGGCAT+TGG + chr3_4:73483656-73483675 None:intergenic 40.0%
ATGTGAAGGATGGATATCAG+TGG - chr3_4:73483800-73483819 Msa0520930:intron 40.0%
TAGAGATAATCCCTCTCCTA+GGG - chr3_4:73483846-73483865 Msa0520930:intron 40.0%
! TACTTAGGGCCTGTTTGTTT+TGG + chr3_4:73484438-73484457 None:intergenic 40.0%
AAAACAAACAGGCCCTAAGT+AGG - chr3_4:73484437-73484456 Msa0520930:intron 40.0%
CTAGAAGCTACTCCTACTTA+GGG + chr3_4:73484452-73484471 None:intergenic 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG - chr3_4:73484516-73484535 Msa0520930:intron 40.0%
CTCAAAAATTGTATTGGGGG+AGG + chr3_4:73484740-73484759 None:intergenic 40.0%
! TTTGAGTTCCCCCAAATAAG+GGG - chr3_4:73484754-73484773 Msa0520930:intron 40.0%
! CTTTGTTTGGGAGTTTAGAG+GGG + chr3_4:73484886-73484905 None:intergenic 40.0%
!! GCTTTGTTTGGGAGTTTAGA+GGG + chr3_4:73484887-73484906 None:intergenic 40.0%
ATGTGGTCACTAATATGCTC+GGG + chr3_4:73485740-73485759 None:intergenic 40.0%
! TAGTGAGTGACATTTCAGGT+TGG + chr3_4:73485791-73485810 None:intergenic 40.0%
GAACTAGTGAGTGACATTTC+AGG + chr3_4:73485795-73485814 None:intergenic 40.0%
! ATGTAGGGGTTGTTTCACTT+TGG + chr3_4:73485821-73485840 None:intergenic 40.0%
CCAATTAATTGGTGAGGATG+AGG + chr3_4:73485862-73485881 None:intergenic 40.0%
CCTCATCCTCACCAATTAAT+TGG - chr3_4:73485859-73485878 Msa0520930:CDS 40.0%
TGTACGCCAATTAATTGGTG+AGG + chr3_4:73485868-73485887 None:intergenic 40.0%
TGAGCTGTACGCCAATTAAT+TGG + chr3_4:73485873-73485892 None:intergenic 40.0%
! CAACTACCAATTTTCTTGGC+TGG + chr3_4:73485917-73485936 None:intergenic 40.0%
TATTCTTCCAGAAATGGCAG+TGG + chr3_4:73486030-73486049 None:intergenic 40.0%
CATGTGGAAGAACTTGACAC+AGG + chr3_4:73483136-73483155 None:intergenic 45.0%
CTGTGTCAAGTTCTTCCACA+TGG - chr3_4:73483134-73483153 Msa0520930:three_prime_UTR 45.0%
!! AGAGAAGTATCCACACACGT+TGG + chr3_4:73483162-73483181 None:intergenic 45.0%
TAACAGGTGTGTCCTGAGAA+GGG + chr3_4:73483200-73483219 None:intergenic 45.0%
TTAACAGGTGTGTCCTGAGA+AGG + chr3_4:73483201-73483220 None:intergenic 45.0%
TCAGGACACACCTGTTAATG+CGG - chr3_4:73483203-73483222 Msa0520930:CDS 45.0%
ACACACCTGTTAATGCGGTT+AGG - chr3_4:73483208-73483227 Msa0520930:CDS 45.0%
!! TCAGGTTGCTGATCAGGTTT+TGG - chr3_4:73483330-73483349 Msa0520930:CDS 45.0%
GCACATGTGGTTCAGTTTCT+CGG + chr3_4:73483398-73483417 None:intergenic 45.0%
GCCTTTCTCTTTCGCGATAT+TGG + chr3_4:73483493-73483512 None:intergenic 45.0%
ATCTGTACGCACAAGAACCT+TGG + chr3_4:73483629-73483648 None:intergenic 45.0%
CTAGAGATAATCCCTCTCCT+AGG - chr3_4:73483845-73483864 Msa0520930:intron 45.0%
TTGAAGTAAGCCCTAGGAGA+GGG + chr3_4:73483859-73483878 None:intergenic 45.0%
CCTAGAAGCTACTCCTACTT+AGG + chr3_4:73484453-73484472 None:intergenic 45.0%
CCTAAGTAGGAGTAGCTTCT+AGG - chr3_4:73484450-73484469 Msa0520930:intron 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr3_4:73484520-73484539 Msa0520930:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr3_4:73484521-73484540 Msa0520930:intron 45.0%
! TTGTATTGGGGGAGGGTTTT+GGG + chr3_4:73484732-73484751 None:intergenic 45.0%
! ATTGTATTGGGGGAGGGTTT+TGG + chr3_4:73484733-73484752 None:intergenic 45.0%
TTGAGTTCCCCCAAATAAGG+GGG - chr3_4:73484755-73484774 Msa0520930:intron 45.0%
TAGAAGACATTGGGAGGAGA+GGG + chr3_4:73484816-73484835 None:intergenic 45.0%
ATAGAAGACATTGGGAGGAG+AGG + chr3_4:73484817-73484836 None:intergenic 45.0%
!!! AGGGGAGGGTTTTGGAAAAA+AGG + chr3_4:73484858-73484877 None:intergenic 45.0%
!! GGCTTTGTTTGGGAGTTTAG+AGG + chr3_4:73484888-73484907 None:intergenic 45.0%
TCCTCGCCATATAATACCGT+TGG - chr3_4:73484992-73485011 Msa0520930:intron 45.0%
ACCAACGGTATTATATGGCG+AGG + chr3_4:73484996-73485015 None:intergenic 45.0%
TCAAGCTTCAGAGCTTGACT+TGG - chr3_4:73485890-73485909 Msa0520930:CDS 45.0%
CTTGGTCCAGCCAAGAAAAT+TGG - chr3_4:73485908-73485927 Msa0520930:intron 45.0%
! GCAAGTGCTGTTGCGAAATT+AGG + chr3_4:73486008-73486027 None:intergenic 45.0%
!!! ATTTTAATTTAAAATAACTA+AGG - chr3_4:73484498-73484517 Msa0520930:intron 5.0%
!!! AATTAATATAATTTTTTTAG+AGG + chr3_4:73485363-73485382 None:intergenic 5.0%
GACACAGGCAAAAATGGCTG+AGG + chr3_4:73483121-73483140 None:intergenic 50.0%
!! CCTGAGAAGGGAGAGTGTTT+AGG + chr3_4:73483188-73483207 None:intergenic 50.0%
CCTAAACACTCTCCCTTCTC+AGG - chr3_4:73483185-73483204 Msa0520930:CDS 50.0%
GAGCAGCACCATTACTACTG+AGG - chr3_4:73483561-73483580 Msa0520930:intron 50.0%
CAGCACCATTACTACTGAGG+AGG - chr3_4:73483564-73483583 Msa0520930:intron 50.0%
AACCTTGGAAATTCTCGGCG+AGG + chr3_4:73483614-73483633 None:intergenic 50.0%
CTTGAAGTAAGCCCTAGGAG+AGG + chr3_4:73483860-73483879 None:intergenic 50.0%
GAGCACTTGAAGTAAGCCCT+AGG + chr3_4:73483865-73483884 None:intergenic 50.0%
TTCAAGTGCTCCTTTGCTCC+TGG - chr3_4:73483874-73483893 Msa0520930:intron 50.0%
!! TTCTTTTTCACAGGGCAGCC+AGG + chr3_4:73483895-73483914 None:intergenic 50.0%
TGGCTGCCCTGTGAAAAAGA+AGG - chr3_4:73483894-73483913 Msa0520930:intron 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr3_4:73484519-73484538 Msa0520930:intron 50.0%
TTTGGGAGTTTGGAGGGGAA+GGG - chr3_4:73484526-73484545 Msa0520930:intron 50.0%
!!! AGGGTTTTGGGGGTTATGGA+GGG + chr3_4:73484720-73484739 None:intergenic 50.0%
! TGTATTGGGGGAGGGTTTTG+GGG + chr3_4:73484731-73484750 None:intergenic 50.0%
TTTGGGAGTTTAGAGGGGAG+GGG + chr3_4:73484881-73484900 None:intergenic 50.0%
GTTTGGGAGTTTAGAGGGGA+GGG + chr3_4:73484882-73484901 None:intergenic 50.0%
TGTTTGGGAGTTTAGAGGGG+AGG + chr3_4:73484883-73484902 None:intergenic 50.0%
GTTGTGCTCTCCTTCGTATG+TGG + chr3_4:73485757-73485776 None:intergenic 50.0%
!! TTTCAGGTTGGTGATGCGCA+TGG + chr3_4:73485779-73485798 None:intergenic 50.0%
ATTGGTGAGGATGAGGATGC+TGG + chr3_4:73485855-73485874 None:intergenic 50.0%
!! CCACACACGTTGGTTCCATG+TGG + chr3_4:73483152-73483171 None:intergenic 55.0%
CCACATGGAACCAACGTGTG+TGG - chr3_4:73483149-73483168 Msa0520930:three_prime_UTR 55.0%
GACCTCGCCGAGAATTTCCA+AGG - chr3_4:73483609-73483628 Msa0520930:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+AGG - chr3_4:73484525-73484544 Msa0520930:intron 55.0%
!! AAGGGAGGGGAGGGTTTTGA+GGG - chr3_4:73484544-73484563 Msa0520930:intron 55.0%
!!! GAGGGTTTTGGGGGTTATGG+AGG + chr3_4:73484721-73484740 None:intergenic 55.0%
!! GTATTGGGGGAGGGTTTTGG+GGG + chr3_4:73484730-73484749 None:intergenic 55.0%
ACATTGGGAGGAGAGGGCTT+TGG + chr3_4:73484810-73484829 None:intergenic 55.0%
! GCACTTGCCACTGCCATTTC+TGG - chr3_4:73486020-73486039 Msa0520930:intron 55.0%
GGAGTTTGGAGGGGAAGGGA+GGG - chr3_4:73484530-73484549 Msa0520930:intron 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG - chr3_4:73484531-73484550 Msa0520930:intron 60.0%
! GAAGGGAGGGGAGGGTTTTG+AGG - chr3_4:73484543-73484562 Msa0520930:intron 60.0%
!!! AGGGAGGGGAGGGTTTTGAG+GGG - chr3_4:73484545-73484564 Msa0520930:intron 60.0%
!!! AGGGGAGGGTTTTGAGGGGT+TGG - chr3_4:73484549-73484568 Msa0520930:intron 60.0%
!!! GGGGAGGGTTTTGGGGGTTA+TGG + chr3_4:73484724-73484743 None:intergenic 60.0%
! TTGGGAGGAGAGGGCTTTGG+AGG + chr3_4:73484807-73484826 None:intergenic 60.0%
GAGTTTAGAGGGGAGGGGAG+GGG + chr3_4:73484876-73484895 None:intergenic 60.0%
GGAGTTTAGAGGGGAGGGGA+GGG + chr3_4:73484877-73484896 None:intergenic 60.0%
CACAGGGCAGCCAGGAGCAA+AGG + chr3_4:73483887-73483906 None:intergenic 65.0%
GGGAGTTTGGAGGGGAAGGG+AGG - chr3_4:73484529-73484548 Msa0520930:intron 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG - chr3_4:73484534-73484553 Msa0520930:intron 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG - chr3_4:73484535-73484554 Msa0520930:intron 65.0%
TTAGAGGGGAGGGGAGGGGA+GGG + chr3_4:73484872-73484891 None:intergenic 65.0%
TTTAGAGGGGAGGGGAGGGG+AGG + chr3_4:73484873-73484892 None:intergenic 65.0%
GGGAGTTTAGAGGGGAGGGG+AGG + chr3_4:73484878-73484897 None:intergenic 65.0%
! GGGAGGGGAGGGGAGGGTTT+TGG + chr3_4:73484866-73484885 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 73483108 73486142 73483108 ID=Msa0520930;Name=Msa0520930
chr3_4 mRNA 73483108 73486142 73483108 ID=Msa0520930-mRNA-1;Parent=Msa0520930;Name=Msa0520930-mRNA-1;_AED=0.08;_eAED=0.08;_QI=45|1|1|1|1|1|4|66|293
chr3_4 exon 73483108 73483533 73483108 ID=Msa0520930-mRNA-1:exon:20625;Parent=Msa0520930-mRNA-1
chr3_4 exon 73485335 73485451 73485335 ID=Msa0520930-mRNA-1:exon:20624;Parent=Msa0520930-mRNA-1
chr3_4 exon 73485584 73485916 73485584 ID=Msa0520930-mRNA-1:exon:20623;Parent=Msa0520930-mRNA-1
chr3_4 exon 73486026 73486142 73486026 ID=Msa0520930-mRNA-1:exon:20622;Parent=Msa0520930-mRNA-1
chr3_4 five_prime_UTR 73486098 73486142 73486098 ID=Msa0520930-mRNA-1:five_prime_utr;Parent=Msa0520930-mRNA-1
chr3_4 CDS 73486026 73486097 73486026 ID=Msa0520930-mRNA-1:cds;Parent=Msa0520930-mRNA-1
chr3_4 CDS 73485584 73485916 73485584 ID=Msa0520930-mRNA-1:cds;Parent=Msa0520930-mRNA-1
chr3_4 CDS 73485335 73485451 73485335 ID=Msa0520930-mRNA-1:cds;Parent=Msa0520930-mRNA-1
chr3_4 CDS 73483174 73483533 73483174 ID=Msa0520930-mRNA-1:cds;Parent=Msa0520930-mRNA-1
chr3_4 three_prime_UTR 73483108 73483173 73483108 ID=Msa0520930-mRNA-1:three_prime_utr;Parent=Msa0520930-mRNA-1
Gene Sequence

>Msa0520930

ATGGAACCAACGTGTGTGGATACTTCTCTCAACCTAAACACTCTCCCTTCTCAGGACACACCTGTTAATGCGGTTGCTGATCAGGTTTTGGTTGAAGAGTTGAAGCGTCTAAGTAGTGAGAATAAGAGGTTAACCGAGAAACTGAACCACATGTGCGACAATTATACTGCTTTGCGAAAGCATTTGAGTCAATTCAGTCACACAAAATTTGAAAATGAATTAGTATCACCAATATCGCGAAAGAGAAAGGCCGAGAGTGTTGAAAATTGTATCAATAGGTTTGGCTGTGCTATTGCTGAGAGCAGCACCATTACTACTGAGGAGGAGATATTCAAACACAACAACATGACCTCGCCGAGAATTTCCAAGGTTCTTGTGCGTACAGATGCATCCAATGCCAGCTTATATGTGAAGGATGGATATCAGTGGAGAAAATATGGTCAGAAAGTCACTAGAGATAATCCCTCTCCTAGGGCTTACTTCAAGTGCTCCTTTGCTCCTGGCTGCCCTGTGAAAAAGAAGGTGCAAAGAAGTGTAGAAGACCCGAGCATATTAGTGACCACATACGAAGGAGAGCACAACCATGCGCATCACCAACCTGAAATGTCACTCACTAGTTCAAACCAAAGTGAAACAACCCCTACATATAATTTAGTTCCAGCATCCTCATCCTCACCAATTAATTGGCGTACAGCTCAAGCTTCAGAGCTTGACTTGGTCCAGCCAAGAAAATTGGTAGTTGATGATTCTCATAAGTCGTCTATCCAGCAGTTATTAGTTCAACAGATGGCTACTTCTTTGACAAGAGATCCTAATTTCGCAACAGCACTTGCCACTGCCATTTCTGGAAGAATAATTCTGGATGTGGAAAAGCCGAAGTGA
Protein sequence

>Msa0520930

MEPTCVDTSLNLNTLPSQDTPVNAVADQVLVEELKRLSSENKRLTEKLNHMCDNYTALRKHLSQFSHTKFENELVSPISRKRKAESVENCINRFGCAIAESSTITTEEEIFKHNNMTSPRISKVLVRTDASNASLYVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPGCPVKKKVQRSVEDPSILVTTYEGEHNHAHHQPEMSLTSSNQSETTPTYNLVPASSSSPINWRTAQASELDLVQPRKLVVDDSHKSSIQQLLVQQMATSLTRDPNFATALATAISGRIILDVEKPK*