Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523200 | XP_024633944.2 | 96.467 | 368 | 11 | 1 | 1 | 366 | 1 | 368 | 0.0 | 734 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523200 | sp|Q9FV70|E2FC_ARATH | 50.836 | 299 | 115 | 7 | 70 | 366 | 123 | 391 | 1.11e-88 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523200 | A0A396J346 | 96.467 | 368 | 11 | 1 | 1 | 366 | 1 | 368 | 0.0 | 734 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0523200 | TF | E2F-DP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523200 | MtrunA17_Chr3g0142581 | 96.467 | 368 | 11 | 1 | 1 | 366 | 1 | 368 | 0.0 | 734 |
| Msa0523200 | MtrunA17_Chr1g0177351 | 46.970 | 330 | 157 | 6 | 53 | 366 | 92 | 419 | 5.28e-86 | 268 |
| Msa0523200 | MtrunA17_Chr4g0025881 | 45.397 | 315 | 155 | 4 | 69 | 366 | 100 | 414 | 9.07e-85 | 264 |
| Msa0523200 | MtrunA17_Chr4g0059551 | 46.377 | 69 | 37 | 0 | 97 | 165 | 14 | 82 | 9.43e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523200 | AT1G47870.1 | 50.836 | 299 | 115 | 7 | 70 | 366 | 123 | 391 | 1.13e-89 | 275 |
| Msa0523200 | AT1G47870.2 | 50.836 | 299 | 115 | 7 | 70 | 366 | 122 | 390 | 1.33e-89 | 275 |
| Msa0523200 | AT5G22220.3 | 44.242 | 330 | 150 | 6 | 69 | 366 | 92 | 419 | 8.09e-80 | 252 |
| Msa0523200 | AT5G22220.2 | 44.242 | 330 | 150 | 6 | 69 | 366 | 92 | 419 | 8.22e-80 | 252 |
| Msa0523200 | AT2G36010.1 | 41.716 | 338 | 175 | 6 | 50 | 366 | 112 | 448 | 2.79e-74 | 238 |
| Msa0523200 | AT2G36010.3 | 41.593 | 339 | 176 | 6 | 50 | 366 | 112 | 450 | 5.53e-73 | 235 |
| Msa0523200 | AT2G36010.2 | 38.507 | 335 | 171 | 7 | 50 | 366 | 162 | 479 | 9.07e-60 | 201 |
| Msa0523200 | AT5G14960.1 | 40.964 | 83 | 48 | 1 | 92 | 174 | 5 | 86 | 1.79e-12 | 68.2 |
| Msa0523200 | AT3G48160.1 | 36.458 | 96 | 61 | 0 | 97 | 192 | 31 | 126 | 3.73e-12 | 67.4 |
| Msa0523200 | AT3G48160.2 | 36.458 | 96 | 61 | 0 | 97 | 192 | 31 | 126 | 3.90e-12 | 67.4 |
| Msa0523200 | AT3G01330.1 | 37.500 | 88 | 54 | 1 | 89 | 176 | 10 | 96 | 7.65e-11 | 63.2 |
Find 114 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAAACTGATAAATTTCT+TGG | 0.195269 | 3_4:-76529891 | None:intergenic |
| TACCATTATGCTTTCCTCTT+TGG | 0.206217 | 3_4:-76529572 | None:intergenic |
| ACAAATTACTCCTACGGATT+TGG | 0.244715 | 3_4:+76532153 | Msa0523200:CDS |
| TCGCTTGACTCAGAGGCTTT+TGG | 0.259553 | 3_4:+76532124 | Msa0523200:CDS |
| TAAAACTGCTGAGATCTTAA+AGG | 0.260105 | 3_4:+76529946 | Msa0523200:CDS |
| ATATTTACTTCCACCGTATA+TGG | 0.272766 | 3_4:-76530190 | None:intergenic |
| TGCAGGTTGATGGTGATTAT+TGG | 0.273035 | 3_4:+76532276 | Msa0523200:intron |
| CATTATATGAACTCTATTCT+TGG | 0.291893 | 3_4:+76532366 | Msa0523200:three_prime_UTR |
| TCTTACCCTTCCATGCTTCC+AGG | 0.295518 | 3_4:+76531507 | Msa0523200:CDS |
| AACATAGAAGAAGAAGTAAA+AGG | 0.295787 | 3_4:-76528771 | None:intergenic |
| TCTTCTTCTTCTGTTAGCTT+TGG | 0.304931 | 3_4:+76528420 | Msa0523200:five_prime_UTR |
| CACTCAAATGAGCAGGAATT+AGG | 0.313374 | 3_4:+76531741 | Msa0523200:intron |
| TAAAAGGAGTGAAATTGAAT+TGG | 0.316779 | 3_4:-76528755 | None:intergenic |
| ACAAATGTTCTTGAAGGAAT+AGG | 0.317166 | 3_4:+76530143 | Msa0523200:CDS |
| ATCTTCTAACTTTGCCTGCT+TGG | 0.327328 | 3_4:-76532011 | None:intergenic |
| ACAAACTTGACCAGTGTATA+AGG | 0.337642 | 3_4:+76531240 | Msa0523200:CDS |
| ACCTCAATGAAACTAGCTTT+TGG | 0.340106 | 3_4:-76531640 | None:intergenic |
| TATAAACCAGGCCTTCAAAT+TGG | 0.347684 | 3_4:-76532417 | None:intergenic |
| AAGGGTAAGAATATCTTCTT+TGG | 0.354876 | 3_4:-76531494 | None:intergenic |
| TTCAAGAGGTACAGATTTAT+CGG | 0.359261 | 3_4:-76531810 | None:intergenic |
| TTATGCTTTCCTCTTTGGTT+GGG | 0.365134 | 3_4:-76529567 | None:intergenic |
| CAATCATTCTGTACTGCCTT+TGG | 0.379050 | 3_4:-76531770 | None:intergenic |
| GACATTACAAATGTTCTTGA+AGG | 0.381084 | 3_4:+76530137 | Msa0523200:CDS |
| ATTATATGAACTCTATTCTT+GGG | 0.387580 | 3_4:+76532367 | Msa0523200:three_prime_UTR |
| ATTATGCTTTCCTCTTTGGT+TGG | 0.394432 | 3_4:-76529568 | None:intergenic |
| AAGCTATAGTGTTGAATTTG+AGG | 0.398643 | 3_4:-76528598 | None:intergenic |
| TGGACTTGAGCCACGAGAAC+TGG | 0.409912 | 3_4:+76530311 | Msa0523200:CDS |
| GGTCAATATATGTAAATGTT+AGG | 0.413047 | 3_4:+76532562 | Msa0523200:three_prime_UTR |
| AAAAGGAGTGAAATTGAATT+GGG | 0.420142 | 3_4:-76528754 | None:intergenic |
| AAACTTCAAAGAACCATATA+CGG | 0.421244 | 3_4:+76530177 | Msa0523200:CDS |
| ACCTGTATTTGAAATCTGAT+TGG | 0.422930 | 3_4:-76529625 | None:intergenic |
| ACAATTCGGTTAGGCCAACT+TGG | 0.425928 | 3_4:-76532313 | None:intergenic |
| TGCCTGGCTACCTACGTAAT+AGG | 0.427347 | 3_4:+76528538 | Msa0523200:five_prime_UTR |
| AAGTTGAATCCCACCTCATC+AGG | 0.430971 | 3_4:-76531670 | None:intergenic |
| GTAGGCATCGCTGACATATA+TGG | 0.444422 | 3_4:+76532541 | Msa0523200:three_prime_UTR |
| ATGATTGTTAGAAGTGCAAC+TGG | 0.445965 | 3_4:+76531786 | Msa0523200:CDS |
| TCTTGGGTTTATCTCTATTG+AGG | 0.448496 | 3_4:+76532383 | Msa0523200:three_prime_UTR |
| GTCAATTCTTAGTGAAAGAA+AGG | 0.450930 | 3_4:+76531333 | Msa0523200:intron |
| AACCAAAGAGGAAAGCATAA+TGG | 0.451388 | 3_4:+76529570 | Msa0523200:CDS |
| GCCAATCAGATTTCAAATAC+AGG | 0.451634 | 3_4:+76529624 | Msa0523200:CDS |
| CGGCTGCAGAATGGAGGGTG+TGG | 0.459695 | 3_4:+76532051 | Msa0523200:CDS |
| AATCGTTATGACAGTTCCTT+AGG | 0.462492 | 3_4:+76529770 | Msa0523200:CDS |
| AATCCCACCTCATCAGGATC+GGG | 0.468967 | 3_4:-76531664 | None:intergenic |
| AATTGACCAATTTGAAGGCC+TGG | 0.473272 | 3_4:+76532411 | Msa0523200:three_prime_UTR |
| GCATCAAGTTAAATCTCTAA+AGG | 0.477562 | 3_4:+76530335 | Msa0523200:CDS |
| ATACAAATTGACCAATTTGA+AGG | 0.481403 | 3_4:+76532406 | Msa0523200:three_prime_UTR |
| TTCTCTTCTTCTTAAAGGGA+AGG | 0.487545 | 3_4:-76528486 | None:intergenic |
| TTGGGTTCAGTTTGAAGAAG+TGG | 0.490056 | 3_4:-76529549 | None:intergenic |
| ATCCTATTACGTAGGTAGCC+AGG | 0.492318 | 3_4:-76528540 | None:intergenic |
| TAAAATAGAGTGAGTGAGTG+AGG | 0.493949 | 3_4:-76528639 | None:intergenic |
| TTGTTCAGCACAAGTGCAGT+TGG | 0.495436 | 3_4:+76532454 | Msa0523200:three_prime_UTR |
| CAGTTTGATCAATGAGGCTA+AGG | 0.500273 | 3_4:+76529904 | Msa0523200:CDS |
| AGCTATAGTGTTGAATTTGA+GGG | 0.503959 | 3_4:-76528597 | None:intergenic |
| AGTTGGCCTAACCGAATTGT+GGG | 0.504357 | 3_4:+76532316 | Msa0523200:CDS |
| TAAGCAACTTATTACAATCA+AGG | 0.507030 | 3_4:+76531615 | Msa0523200:CDS |
| CAATTCGGTTAGGCCAACTT+GGG | 0.510824 | 3_4:-76532312 | None:intergenic |
| TGAGGCTGTGAGTGCCAAGC+AGG | 0.512509 | 3_4:+76531997 | Msa0523200:CDS |
| CTGGTCAAGTTTGTATTCCT+CGG | 0.512943 | 3_4:-76531231 | None:intergenic |
| CAAGCACGACCACAAGTTTG+AGG | 0.515307 | 3_4:+76531979 | Msa0523200:CDS |
| AAGTTGGCCTAACCGAATTG+TGG | 0.515619 | 3_4:+76532315 | Msa0523200:CDS |
| TCATTCTGTACTGCCTTTGG+TGG | 0.517033 | 3_4:-76531767 | None:intergenic |
| AATTCAACAAATTACTCCTA+CGG | 0.521739 | 3_4:+76532147 | Msa0523200:CDS |
| CTGCTACTACTACTAGTGTT+GGG | 0.522294 | 3_4:+76528671 | Msa0523200:five_prime_UTR |
| AAAGGACCTGGAAGCATGGA+AGG | 0.527585 | 3_4:-76531513 | None:intergenic |
| CAGCCGTTGCTACTCCGTGA+TGG | 0.529933 | 3_4:-76532034 | None:intergenic |
| GAGTAGCAACGGCTGCAGAA+TGG | 0.537502 | 3_4:+76532042 | Msa0523200:CDS |
| AGGAATTAGGCTTCCACCAA+AGG | 0.540877 | 3_4:+76531754 | Msa0523200:intron |
| AAAATAAAATCCTATTACGT+AGG | 0.549946 | 3_4:-76528548 | None:intergenic |
| GAATCCCACCTCATCAGGAT+CGG | 0.556366 | 3_4:-76531665 | None:intergenic |
| TTTCAATCAGATCCCCAAGT+TGG | 0.557691 | 3_4:+76532299 | Msa0523200:CDS |
| ACTGCTACTACTACTAGTGT+TGG | 0.558979 | 3_4:+76528670 | Msa0523200:five_prime_UTR |
| TGAGGAATTTGATCGTCGGT+TGG | 0.559998 | 3_4:-76528726 | None:intergenic |
| GGCTGCAGAATGGAGGGTGT+GGG | 0.561995 | 3_4:+76532052 | Msa0523200:CDS |
| ATTTATCAGTTTGATCAATG+AGG | 0.562030 | 3_4:+76529898 | Msa0523200:CDS |
| AAAATAGAGTGAGTGAGTGA+GGG | 0.562597 | 3_4:-76528638 | None:intergenic |
| TCCAAAAGCTAGTTTCATTG+AGG | 0.562628 | 3_4:+76531639 | Msa0523200:CDS |
| TTAACAGTGTTGCTCTGACT+CGG | 0.564080 | 3_4:-76529519 | None:intergenic |
| AAAGGAGCTTATAAGAAACC+TGG | 0.565536 | 3_4:+76531351 | Msa0523200:CDS |
| ACCTAGCGAACCTTATACAC+TGG | 0.568815 | 3_4:-76531250 | None:intergenic |
| GCTATAGTGTTGAATTTGAG+GGG | 0.568867 | 3_4:-76528596 | None:intergenic |
| CACTCACAGCCTCAAACTTG+TGG | 0.574615 | 3_4:-76531988 | None:intergenic |
| GGTTCAGTTTGAAGAAGTGG+AGG | 0.575422 | 3_4:-76529546 | None:intergenic |
| CAGAAGAGAAGTACTTCAAG+AGG | 0.575816 | 3_4:-76531824 | None:intergenic |
| CTTATTCACAGGGGATGTGA+TGG | 0.579582 | 3_4:+76530291 | Msa0523200:intron |
| TAGCAACGGCTGCAGAATGG+AGG | 0.582567 | 3_4:+76532045 | Msa0523200:CDS |
| ACTTGATGCTCCAGTTCTCG+TGG | 0.583078 | 3_4:-76530321 | None:intergenic |
| GATCCATCACGGAGTAGCAA+CGG | 0.589664 | 3_4:+76532031 | Msa0523200:CDS |
| TTTAAGTTCGCTTGACTCAG+AGG | 0.590229 | 3_4:+76532117 | Msa0523200:CDS |
| CAAACTGAACCCAACCAAAG+AGG | 0.600334 | 3_4:+76529558 | Msa0523200:CDS |
| AGGAAAGAGCATTATAAACC+AGG | 0.600832 | 3_4:-76532429 | None:intergenic |
| AGCGAACTTAAACTCCCAGA+AGG | 0.601180 | 3_4:-76532106 | None:intergenic |
| CTTATAAGAAACCTGGAGGA+AGG | 0.602931 | 3_4:+76531358 | Msa0523200:CDS |
| TGCACTTGTGCTGAACAAAG+AGG | 0.604527 | 3_4:-76532449 | None:intergenic |
| TTGATCAATGAGGCTAAGGA+TGG | 0.604623 | 3_4:+76529908 | Msa0523200:CDS |
| ATATCGCATTTGCTTAGAGT+AGG | 0.616176 | 3_4:+76532523 | Msa0523200:three_prime_UTR |
| GTGGGATTATTAGAAAACCA+AGG | 0.618758 | 3_4:+76532070 | Msa0523200:CDS |
| AGCAACGGCTGCAGAATGGA+GGG | 0.619777 | 3_4:+76532046 | Msa0523200:CDS |
| GCGAACTTAAACTCCCAGAA+GGG | 0.628059 | 3_4:-76532105 | None:intergenic |
| TGAGGTCCCCGATCCTGATG+AGG | 0.629610 | 3_4:+76531657 | Msa0523200:CDS |
| AATTCGGTTAGGCCAACTTG+GGG | 0.631796 | 3_4:-76532311 | None:intergenic |
| CTATAGTGTTGAATTTGAGG+GGG | 0.633244 | 3_4:-76528595 | None:intergenic |
| CTGGAGGAAGGTGAAAACAC+CGG | 0.635878 | 3_4:+76531370 | Msa0523200:CDS |
| ATTCATACATCCAAATCCGT+AGG | 0.638390 | 3_4:-76532163 | None:intergenic |
| TGGAGGAAGGTGAAAACACC+GGG | 0.639040 | 3_4:+76531371 | Msa0523200:CDS |
| AAAATGAGGAATTTGATCGT+CGG | 0.640396 | 3_4:-76528730 | None:intergenic |
| GTTGGCCTAACCGAATTGTG+GGG | 0.656007 | 3_4:+76532317 | Msa0523200:CDS |
| AGTTGATAGCTTATATGCCG+AGG | 0.657732 | 3_4:+76531214 | Msa0523200:CDS |
| CAAAGTTAGAAGATCCATCA+CGG | 0.671165 | 3_4:+76532020 | Msa0523200:CDS |
| CTTCAAAGAACCATATACGG+TGG | 0.675052 | 3_4:+76530180 | Msa0523200:CDS |
| AAGGACCTGGAAGCATGGAA+GGG | 0.676862 | 3_4:-76531512 | None:intergenic |
| ATCCCACCTCATCAGGATCG+GGG | 0.681264 | 3_4:-76531663 | None:intergenic |
| TTGGCCTAACCGAATTGTGG+GGG | 0.685774 | 3_4:+76532318 | Msa0523200:CDS |
| GGAGCTTATAAGAAACCTGG+AGG | 0.707876 | 3_4:+76531354 | Msa0523200:CDS |
| ACTGTCATAACGATTGACTG+TGG | 0.771835 | 3_4:-76529762 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTAT+TGG | + | chr3_4:76529188-76529207 | Msa0523200:intron | 0.0% |
| !!! | TTTTTTTTTTTTTTTTTATT+GGG | + | chr3_4:76529189-76529208 | Msa0523200:intron | 0.0% |
| !! | AAATAAATAAAAATTGAAGA+AGG | - | chr3_4:76528823-76528842 | None:intergenic | 10.0% |
| !!! | ACATTATTTTTATTTTATGT+TGG | + | chr3_4:76529706-76529725 | Msa0523200:intron | 10.0% |
| !!! | CATTATTTTTATTTTATGTT+GGG | + | chr3_4:76529707-76529726 | Msa0523200:intron | 10.0% |
| !!! | CAAAATAAAAATGAAATTTT+AGG | + | chr3_4:76532222-76532241 | Msa0523200:intron | 10.0% |
| !! | ACTAAAATTAGTATAAGTAA+TGG | - | chr3_4:76529161-76529180 | None:intergenic | 15.0% |
| !!! | AAATATCTAATCTTTTTATC+TGG | + | chr3_4:76530207-76530226 | Msa0523200:intron | 15.0% |
| !! | AATGAAATGATAATATATGA+TGG | + | chr3_4:76530266-76530285 | Msa0523200:intron | 15.0% |
| !! | ATGAAATGATAATATATGAT+GGG | + | chr3_4:76530267-76530286 | Msa0523200:intron | 15.0% |
| !!! | ATGTTTTTTATTTTGTTTGT+TGG | + | chr3_4:76530853-76530872 | Msa0523200:intron | 15.0% |
| !!! | ACATTACTATTATAATTTGT+GGG | - | chr3_4:76531087-76531106 | None:intergenic | 15.0% |
| !! | AACATTACTATTATAATTTG+TGG | - | chr3_4:76531088-76531107 | None:intergenic | 15.0% |
| !!! | ATTTTTATTTTGCAGTTTTT+TGG | - | chr3_4:76532214-76532233 | None:intergenic | 15.0% |
| !! | AATAAAATGAATGAAAACTT+TGG | - | chr3_4:76532248-76532267 | None:intergenic | 15.0% |
| !!! | TATTTTCTCTTCTTCTTAAA+GGG | - | chr3_4:76528493-76528512 | None:intergenic | 20.0% |
| !!! | ATATTTTCTCTTCTTCTTAA+AGG | - | chr3_4:76528494-76528513 | None:intergenic | 20.0% |
| !! | AAAATAAAATCCTATTACGT+AGG | - | chr3_4:76528551-76528570 | None:intergenic | 20.0% |
| !!! | CAAAAAAGATAGGATATTTT+TGG | - | chr3_4:76528896-76528915 | None:intergenic | 20.0% |
| !! | CTTATAATTATGTTTGCTTA+TGG | + | chr3_4:76529296-76529315 | Msa0523200:intron | 20.0% |
| !!! | TATTTTTATTTTATGTTGGG+TGG | + | chr3_4:76529710-76529729 | Msa0523200:intron | 20.0% |
| !!! | TCATATGTTTTACACATATT+TGG | - | chr3_4:76531116-76531135 | None:intergenic | 20.0% |
| !! | TAAGAAATCAAAACTCATAA+AGG | - | chr3_4:76531421-76531440 | None:intergenic | 20.0% |
| !! | TATCTTCTTTGGTAAAAAAA+AGG | - | chr3_4:76531486-76531505 | None:intergenic | 20.0% |
| !!! | TATACAAAGTTTTCAATACT+TGG | - | chr3_4:76531543-76531562 | None:intergenic | 20.0% |
| !! | ACAAAAGTGAGTAATAATAA+TGG | - | chr3_4:76531578-76531597 | None:intergenic | 20.0% |
| !!! | TTAATATCCTTTTTCATTGT+TGG | + | chr3_4:76531905-76531924 | Msa0523200:intron | 20.0% |
| !! | GGTTATTAATTAATCATTAG+AGG | - | chr3_4:76532193-76532212 | None:intergenic | 20.0% |
| !!! | CATTTTATTTGTATTTTTGC+AGG | + | chr3_4:76532259-76532278 | Msa0523200:intron | 20.0% |
| !! | ATTATATGAACTCTATTCTT+GGG | + | chr3_4:76532367-76532386 | Msa0523200:three_prime_UTR | 20.0% |
| ! | AAATTGAATTGGGAAAAATG+AGG | - | chr3_4:76528747-76528766 | None:intergenic | 25.0% |
| ! | AAAAGGAGTGAAATTGAATT+GGG | - | chr3_4:76528757-76528776 | None:intergenic | 25.0% |
| ! | TAAAAGGAGTGAAATTGAAT+TGG | - | chr3_4:76528758-76528777 | None:intergenic | 25.0% |
| ! | AACATAGAAGAAGAAGTAAA+AGG | - | chr3_4:76528774-76528793 | None:intergenic | 25.0% |
| ! | TAAAAATTGAAGAAGGAAGA+AGG | - | chr3_4:76528816-76528835 | None:intergenic | 25.0% |
| ! | GGTTAATGTACAAAAAAGAT+AGG | - | chr3_4:76528906-76528925 | None:intergenic | 25.0% |
| ! | AACATGAAGAATAAAGTAAC+AGG | - | chr3_4:76528927-76528946 | None:intergenic | 25.0% |
| !!! | TTAGGTTGATTCATGATAAT+TGG | - | chr3_4:76528955-76528974 | None:intergenic | 25.0% |
| !! | CATTGTTGACTAATATTTGT+TGG | - | chr3_4:76529367-76529386 | None:intergenic | 25.0% |
| ! | GATCAAACTGATAAATTTCT+TGG | - | chr3_4:76529894-76529913 | None:intergenic | 25.0% |
| ! | ATTTATCAGTTTGATCAATG+AGG | + | chr3_4:76529898-76529917 | Msa0523200:CDS | 25.0% |
| !! | TGTATTATTAAAGCACTAGT+AGG | - | chr3_4:76530040-76530059 | None:intergenic | 25.0% |
| !! | AATTTGACATTTGTCTTTTC+AGG | + | chr3_4:76530094-76530113 | Msa0523200:intron | 25.0% |
| ! | AAACTTCAAAGAACCATATA+CGG | + | chr3_4:76530177-76530196 | Msa0523200:CDS | 25.0% |
| !! | TTTTATCTGGTACTTACTAT+TGG | + | chr3_4:76530220-76530239 | Msa0523200:intron | 25.0% |
| ! | TTTATCTGGTACTTACTATT+GGG | + | chr3_4:76530221-76530240 | Msa0523200:intron | 25.0% |
| ! | TTCATCTATAGTATACAAAC+CGG | - | chr3_4:76530595-76530614 | None:intergenic | 25.0% |
| !!! | TAGAAGTATTTCAATCTTGA+GGG | - | chr3_4:76530796-76530815 | None:intergenic | 25.0% |
| !!! | ATAGAAGTATTTCAATCTTG+AGG | - | chr3_4:76530797-76530816 | None:intergenic | 25.0% |
| !!! | TTTATTTTGTTTGTTGGATG+AGG | + | chr3_4:76530859-76530878 | Msa0523200:intron | 25.0% |
| !! | TTGATTTGATATCATCATGT+TGG | + | chr3_4:76530905-76530924 | Msa0523200:intron | 25.0% |
| ! | TTGGTTCAATTCTGATAATT+TGG | + | chr3_4:76531176-76531195 | Msa0523200:intron | 25.0% |
| ! | AGTGAGTTTATTTGATCATT+AGG | + | chr3_4:76531458-76531477 | Msa0523200:intron | 25.0% |
| !! | TTTTCAATACTTGGAGAAAA+AGG | - | chr3_4:76531534-76531553 | None:intergenic | 25.0% |
| ! | TAAGCAACTTATTACAATCA+AGG | + | chr3_4:76531615-76531634 | Msa0523200:CDS | 25.0% |
| ! | AGGATATTAACAAATAAGCA+CGG | - | chr3_4:76531895-76531914 | None:intergenic | 25.0% |
| ! | CTTTAAACCAACAATGAAAA+AGG | - | chr3_4:76531915-76531934 | None:intergenic | 25.0% |
| ! | GCTACAAGCATATAAAATAT+CGG | - | chr3_4:76531960-76531979 | None:intergenic | 25.0% |
| ! | AATTCAACAAATTACTCCTA+CGG | + | chr3_4:76532147-76532166 | Msa0523200:CDS | 25.0% |
| ! | CATTATATGAACTCTATTCT+TGG | + | chr3_4:76532366-76532385 | Msa0523200:three_prime_UTR | 25.0% |
| ! | ATACAAATTGACCAATTTGA+AGG | + | chr3_4:76532406-76532425 | Msa0523200:three_prime_UTR | 25.0% |
| ! | GGTCAATATATGTAAATGTT+AGG | + | chr3_4:76532562-76532581 | Msa0523200:three_prime_UTR | 25.0% |
| !!! | TTTTTATTTTTATCGCTGCC+TGG | + | chr3_4:76528522-76528541 | Msa0523200:five_prime_UTR | 30.0% |
| ! | AGCTATAGTGTTGAATTTGA+GGG | - | chr3_4:76528600-76528619 | None:intergenic | 30.0% |
| ! | AAGCTATAGTGTTGAATTTG+AGG | - | chr3_4:76528601-76528620 | None:intergenic | 30.0% |
| AAAATGAGGAATTTGATCGT+CGG | - | chr3_4:76528733-76528752 | None:intergenic | 30.0% | |
| AAGAGATCTCTTAACATCTT+AGG | - | chr3_4:76528973-76528992 | None:intergenic | 30.0% | |
| ATAACATAGGTGCATTCTTA+GGG | - | chr3_4:76529020-76529039 | None:intergenic | 30.0% | |
| TATAACATAGGTGCATTCTT+AGG | - | chr3_4:76529021-76529040 | None:intergenic | 30.0% | |
| AAGAATGCACCTATGTTATA+TGG | + | chr3_4:76529021-76529040 | Msa0523200:intron | 30.0% | |
| GAGACTAATCCATATAACAT+AGG | - | chr3_4:76529033-76529052 | None:intergenic | 30.0% | |
| TTAGTTGTTAGAACTGTTCT+AGG | + | chr3_4:76529111-76529130 | Msa0523200:intron | 30.0% | |
| ! | ACCTGTATTTGAAATCTGAT+TGG | - | chr3_4:76529628-76529647 | None:intergenic | 30.0% |
| !!! | AGCAGTTTTATTTAGGTCAA+GGG | - | chr3_4:76529936-76529955 | None:intergenic | 30.0% |
| !!! | AGATCTCAGCAGTTTTATTT+AGG | - | chr3_4:76529943-76529962 | None:intergenic | 30.0% |
| TAAAACTGCTGAGATCTTAA+AGG | + | chr3_4:76529946-76529965 | Msa0523200:CDS | 30.0% | |
| TTCATTGTATATATGCTCGA+TGG | + | chr3_4:76529983-76530002 | Msa0523200:intron | 30.0% | |
| !!! | TGTCTTTTCAGGTTCAAAAA+AGG | + | chr3_4:76530105-76530124 | Msa0523200:intron | 30.0% |
| GACATTACAAATGTTCTTGA+AGG | + | chr3_4:76530137-76530156 | Msa0523200:CDS | 30.0% | |
| ACAAATGTTCTTGAAGGAAT+AGG | + | chr3_4:76530143-76530162 | Msa0523200:CDS | 30.0% | |
| ATATTTACTTCCACCGTATA+TGG | - | chr3_4:76530193-76530212 | None:intergenic | 30.0% | |
| GCATCAAGTTAAATCTCTAA+AGG | + | chr3_4:76530335-76530354 | Msa0523200:CDS | 30.0% | |
| !!! | ATCTATTTTTACCTGTCAGT+TGG | + | chr3_4:76530365-76530384 | Msa0523200:intron | 30.0% |
| ATACATATTAACCAACTGAC+AGG | - | chr3_4:76530379-76530398 | None:intergenic | 30.0% | |
| GTATGATCGGATGATTAATT+AGG | + | chr3_4:76530426-76530445 | Msa0523200:intron | 30.0% | |
| ! | TTTAGTTTCTTCCAAGTCAT+AGG | + | chr3_4:76530499-76530518 | Msa0523200:intron | 30.0% |
| ACTGCTAACAACAAATACTT+CGG | - | chr3_4:76530629-76530648 | None:intergenic | 30.0% | |
| AATACAAGTTACTAGCAGTA+AGG | + | chr3_4:76530690-76530709 | Msa0523200:intron | 30.0% | |
| TTGAAATACTTCTATGTGAC+TGG | + | chr3_4:76530802-76530821 | Msa0523200:intron | 30.0% | |
| TATTACCTGAACCTAAGAAA+GGG | - | chr3_4:76531040-76531059 | None:intergenic | 30.0% | |
| !! | CAGAGCATTAATTTGCTAAA+TGG | - | chr3_4:76531141-76531160 | None:intergenic | 30.0% |
| GTCAATTCTTAGTGAAAGAA+AGG | + | chr3_4:76531333-76531352 | Msa0523200:intron | 30.0% | |
| AAGGGTAAGAATATCTTCTT+TGG | - | chr3_4:76531497-76531516 | None:intergenic | 30.0% | |
| ! | TTCAAGAGGTACAGATTTAT+CGG | - | chr3_4:76531813-76531832 | None:intergenic | 30.0% |
| !! | TTTGTATTTTTGCAGGTTGA+TGG | + | chr3_4:76532266-76532285 | Msa0523200:intron | 30.0% |
| AGAAGAAGAAGAAGAAGAAG+CGG | - | chr3_4:76528412-76528431 | None:intergenic | 35.0% | |
| ! | TCTTCTTCTTCTGTTAGCTT+TGG | + | chr3_4:76528420-76528439 | Msa0523200:five_prime_UTR | 35.0% |
| TTCTCTTCTTCTTAAAGGGA+AGG | - | chr3_4:76528489-76528508 | None:intergenic | 35.0% | |
| ! | CTATAGTGTTGAATTTGAGG+GGG | - | chr3_4:76528598-76528617 | None:intergenic | 35.0% |
| ! | GCTATAGTGTTGAATTTGAG+GGG | - | chr3_4:76528599-76528618 | None:intergenic | 35.0% |
| AAAATAGAGTGAGTGAGTGA+GGG | - | chr3_4:76528641-76528660 | None:intergenic | 35.0% | |
| TAAAATAGAGTGAGTGAGTG+AGG | - | chr3_4:76528642-76528661 | None:intergenic | 35.0% | |
| AGAAGGAAGAAGAAGACTTA+CGG | - | chr3_4:76528799-76528818 | None:intergenic | 35.0% | |
| ATTTCACACACAAGATCGAT+CGG | + | chr3_4:76528856-76528875 | Msa0523200:intron | 35.0% | |
| AGAGATCTCTTCTTCTTTCA+TGG | + | chr3_4:76528982-76529001 | Msa0523200:intron | 35.0% | |
| GAGATCTCTTCTTCTTTCAT+GGG | + | chr3_4:76528983-76529002 | Msa0523200:intron | 35.0% | |
| !! | GTTATATGGATTAGTCTCTG+CGG | + | chr3_4:76529035-76529054 | Msa0523200:intron | 35.0% |
| ! | CAGTTCTAACAACTAACAAG+CGG | - | chr3_4:76529107-76529126 | None:intergenic | 35.0% |
| GCGACAATGTTACAATTTGT+TGG | + | chr3_4:76529213-76529232 | Msa0523200:intron | 35.0% | |
| ! | GCAAGCATTTAAAGTATGAG+CGG | - | chr3_4:76529412-76529431 | None:intergenic | 35.0% |
| TTATGCTTTCCTCTTTGGTT+GGG | - | chr3_4:76529570-76529589 | None:intergenic | 35.0% | |
| ATTATGCTTTCCTCTTTGGT+TGG | - | chr3_4:76529571-76529590 | None:intergenic | 35.0% | |
| ! | AACCAAAGAGGAAAGCATAA+TGG | + | chr3_4:76529570-76529589 | Msa0523200:CDS | 35.0% |
| TACCATTATGCTTTCCTCTT+TGG | - | chr3_4:76529575-76529594 | None:intergenic | 35.0% | |
| GCCAATCAGATTTCAAATAC+AGG | + | chr3_4:76529624-76529643 | Msa0523200:CDS | 35.0% | |
| AATCGTTATGACAGTTCCTT+AGG | + | chr3_4:76529770-76529789 | Msa0523200:CDS | 35.0% | |
| CATAAAAGATCACTTGAGTG+TGG | - | chr3_4:76529801-76529820 | None:intergenic | 35.0% | |
| TTACATCATGTACTGTTTGC+AGG | + | chr3_4:76529860-76529879 | Msa0523200:intron | 35.0% | |
| !!! | CAGCAGTTTTATTTAGGTCA+AGG | - | chr3_4:76529937-76529956 | None:intergenic | 35.0% |
| ! | TTTTACGCATCTGGTATGAT+CGG | + | chr3_4:76530413-76530432 | Msa0523200:intron | 35.0% |
| TGTTGTTAGCAGTACAGTTA+AGG | + | chr3_4:76530636-76530655 | Msa0523200:intron | 35.0% | |
| ! | CATTATTTCTTGAAGCCGAA+AGG | + | chr3_4:76530734-76530753 | Msa0523200:intron | 35.0% |
| GAAATATACGCAATCAGTCT+TGG | + | chr3_4:76531004-76531023 | Msa0523200:intron | 35.0% | |
| ! | GTTCCAATTTTCCCTTTCTT+AGG | + | chr3_4:76531026-76531045 | Msa0523200:intron | 35.0% |
| GAACCTAAGAAAGGGAAAAT+TGG | - | chr3_4:76531032-76531051 | None:intergenic | 35.0% | |
| ! | ATTTTCCCTTTCTTAGGTTC+AGG | + | chr3_4:76531032-76531051 | Msa0523200:intron | 35.0% |
| CTATTACCTGAACCTAAGAA+AGG | - | chr3_4:76531041-76531060 | None:intergenic | 35.0% | |
| !! | ATTTGTGGGTAAAGAGTGTT+TGG | - | chr3_4:76531073-76531092 | None:intergenic | 35.0% |
| CAAATTAATGCTCTGCAGTA+TGG | + | chr3_4:76531146-76531165 | Msa0523200:intron | 35.0% | |
| TCTGCAGTATGGAAATTGTT+TGG | + | chr3_4:76531157-76531176 | Msa0523200:intron | 35.0% | |
| ACAAACTTGACCAGTGTATA+AGG | + | chr3_4:76531240-76531259 | Msa0523200:CDS | 35.0% | |
| AAAGGAGCTTATAAGAAACC+TGG | + | chr3_4:76531351-76531370 | Msa0523200:CDS | 35.0% | |
| ! | TCCAAAAGCTAGTTTCATTG+AGG | + | chr3_4:76531639-76531658 | Msa0523200:CDS | 35.0% |
| !!! | ACCTCAATGAAACTAGCTTT+TGG | - | chr3_4:76531643-76531662 | None:intergenic | 35.0% |
| ! | ATGATTGTTAGAAGTGCAAC+TGG | + | chr3_4:76531786-76531805 | Msa0523200:CDS | 35.0% |
| GGTTAGAGACACATGAAATA+CGG | - | chr3_4:76531939-76531958 | None:intergenic | 35.0% | |
| CAAAGTTAGAAGATCCATCA+CGG | + | chr3_4:76532020-76532039 | Msa0523200:CDS | 35.0% | |
| GTGGGATTATTAGAAAACCA+AGG | + | chr3_4:76532070-76532089 | Msa0523200:CDS | 35.0% | |
| !! | AAGGGTTTTTCTGAAAACCT+TGG | - | chr3_4:76532090-76532109 | None:intergenic | 35.0% |
| ! | GTTTTCAGAAAAACCCTTCT+GGG | + | chr3_4:76532092-76532111 | Msa0523200:CDS | 35.0% |
| ACAAATTACTCCTACGGATT+TGG | + | chr3_4:76532153-76532172 | Msa0523200:CDS | 35.0% | |
| ATTCATACATCCAAATCCGT+AGG | - | chr3_4:76532166-76532185 | None:intergenic | 35.0% | |
| ! | ATATTTCTACCCCCACAATT+CGG | - | chr3_4:76532330-76532349 | None:intergenic | 35.0% |
| TCTTGGGTTTATCTCTATTG+AGG | + | chr3_4:76532383-76532402 | Msa0523200:three_prime_UTR | 35.0% | |
| TATAAACCAGGCCTTCAAAT+TGG | - | chr3_4:76532420-76532439 | None:intergenic | 35.0% | |
| !! | AGGAAAGAGCATTATAAACC+AGG | - | chr3_4:76532432-76532451 | None:intergenic | 35.0% |
| ATATCGCATTTGCTTAGAGT+AGG | + | chr3_4:76532523-76532542 | Msa0523200:three_prime_UTR | 35.0% | |
| ACTGCTACTACTACTAGTGT+TGG | + | chr3_4:76528670-76528689 | Msa0523200:five_prime_UTR | 40.0% | |
| CTGCTACTACTACTAGTGTT+GGG | + | chr3_4:76528671-76528690 | Msa0523200:five_prime_UTR | 40.0% | |
| GAAGGAAGAAGAAGACTTAC+GGG | - | chr3_4:76528798-76528817 | None:intergenic | 40.0% | |
| ! | TTAACAGTGTTGCTCTGACT+CGG | - | chr3_4:76529522-76529541 | None:intergenic | 40.0% |
| TTGGGTTCAGTTTGAAGAAG+TGG | - | chr3_4:76529552-76529571 | None:intergenic | 40.0% | |
| CTGAATTCAGAGAGTCTGAT+AGG | - | chr3_4:76529742-76529761 | None:intergenic | 40.0% | |
| ACTGTCATAACGATTGACTG+TGG | - | chr3_4:76529765-76529784 | None:intergenic | 40.0% | |
| CAGTTTGATCAATGAGGCTA+AGG | + | chr3_4:76529904-76529923 | Msa0523200:CDS | 40.0% | |
| TTGATCAATGAGGCTAAGGA+TGG | + | chr3_4:76529908-76529927 | Msa0523200:CDS | 40.0% | |
| AGTAGGTGAAGCTCAAAATC+AGG | - | chr3_4:76530023-76530042 | None:intergenic | 40.0% | |
| CTTCAAAGAACCATATACGG+TGG | + | chr3_4:76530180-76530199 | Msa0523200:CDS | 40.0% | |
| !! | ATATGATGGGCCTTATTCAC+AGG | + | chr3_4:76530280-76530299 | Msa0523200:intron | 40.0% |
| !! | TATGATGGGCCTTATTCACA+GGG | + | chr3_4:76530281-76530300 | Msa0523200:intron | 40.0% |
| ATGCGTAAAAGCAGGAAATG+TGG | - | chr3_4:76530403-76530422 | None:intergenic | 40.0% | |
| !! | ATTTCCTGCTTTTACGCATC+TGG | + | chr3_4:76530404-76530423 | Msa0523200:intron | 40.0% |
| TCTTCCAAGTCATAGGTTTC+AGG | + | chr3_4:76530506-76530525 | Msa0523200:intron | 40.0% | |
| GATTCCTGAAACCTATGACT+TGG | - | chr3_4:76530513-76530532 | None:intergenic | 40.0% | |
| CAGGAATCTTATTGTCTTCG+TGG | + | chr3_4:76530525-76530544 | Msa0523200:intron | 40.0% | |
| TCCTAGGTGCAATGTCTAAT+CGG | - | chr3_4:76530568-76530587 | None:intergenic | 40.0% | |
| TATACAAACCGGAGATTCCT+AGG | - | chr3_4:76530584-76530603 | None:intergenic | 40.0% | |
| ATGTCTTCAGTAGCTCAAGT+TGG | - | chr3_4:76530717-76530736 | None:intergenic | 40.0% | |
| ! | TGAAGCCGAAAGGAAACTTT+TGG | + | chr3_4:76530744-76530763 | Msa0523200:intron | 40.0% |
| ! | GAAGCCGAAAGGAAACTTTT+GGG | + | chr3_4:76530745-76530764 | Msa0523200:intron | 40.0% |
| TCAGCCCAAAAGTTTCCTTT+CGG | - | chr3_4:76530752-76530771 | None:intergenic | 40.0% | |
| !! | GGTAAAGAGTGTTTGGCTAA+AGG | - | chr3_4:76531066-76531085 | None:intergenic | 40.0% |
| CTGATAATTTGGTCCATTGC+AGG | + | chr3_4:76531187-76531206 | Msa0523200:intron | 40.0% | |
| CTATCAACTTCATCCTGCAA+TGG | - | chr3_4:76531203-76531222 | None:intergenic | 40.0% | |
| !! | AGTTGATAGCTTATATGCCG+AGG | + | chr3_4:76531214-76531233 | Msa0523200:CDS | 40.0% |
| CTGGTCAAGTTTGTATTCCT+CGG | - | chr3_4:76531234-76531253 | None:intergenic | 40.0% | |
| CTTATAAGAAACCTGGAGGA+AGG | + | chr3_4:76531358-76531377 | Msa0523200:CDS | 40.0% | |
| TGTCAGTAGTTCTTACTTCC+CGG | - | chr3_4:76531392-76531411 | None:intergenic | 40.0% | |
| ATACTTGGAGAAAAAGGACC+TGG | - | chr3_4:76531528-76531547 | None:intergenic | 40.0% | |
| GAGGTGGGATTCAACTTATA+TGG | + | chr3_4:76531676-76531695 | Msa0523200:intron | 40.0% | |
| CACTCAAATGAGCAGGAATT+AGG | + | chr3_4:76531741-76531760 | Msa0523200:intron | 40.0% | |
| CAATCATTCTGTACTGCCTT+TGG | - | chr3_4:76531773-76531792 | None:intergenic | 40.0% | |
| !! | CAGAAGAGAAGTACTTCAAG+AGG | - | chr3_4:76531827-76531846 | None:intergenic | 40.0% |
| ATCTTCTAACTTTGCCTGCT+TGG | - | chr3_4:76532014-76532033 | None:intergenic | 40.0% | |
| ! | GGTTTTCAGAAAAACCCTTC+TGG | + | chr3_4:76532091-76532110 | Msa0523200:CDS | 40.0% |
| ! | TTTAAGTTCGCTTGACTCAG+AGG | + | chr3_4:76532117-76532136 | Msa0523200:CDS | 40.0% |
| !! | TGCAGGTTGATGGTGATTAT+TGG | + | chr3_4:76532276-76532295 | Msa0523200:intron | 40.0% |
| TTTCAATCAGATCCCCAAGT+TGG | + | chr3_4:76532299-76532318 | Msa0523200:CDS | 40.0% | |
| AATTGACCAATTTGAAGGCC+TGG | + | chr3_4:76532411-76532430 | Msa0523200:three_prime_UTR | 40.0% | |
| GAAGAAGAAGAAGAAGCGGT+GGG | - | chr3_4:76528408-76528427 | None:intergenic | 45.0% | |
| AGAAGAAGAAGAAGAAGCGG+TGG | - | chr3_4:76528409-76528428 | None:intergenic | 45.0% | |
| ATCCTATTACGTAGGTAGCC+AGG | - | chr3_4:76528543-76528562 | None:intergenic | 45.0% | |
| !! | TGAGTGAGTGAGGGTTTTAG+CGG | - | chr3_4:76528632-76528651 | None:intergenic | 45.0% |
| TGAGGAATTTGATCGTCGGT+TGG | - | chr3_4:76528729-76528748 | None:intergenic | 45.0% | |
| CATAGGTGCATTCTTAGGGT+CGG | - | chr3_4:76529016-76529035 | None:intergenic | 45.0% | |
| !! | TATGGATTAGTCTCTGCGGT+TGG | + | chr3_4:76529039-76529058 | Msa0523200:intron | 45.0% |
| !! | ATGGATTAGTCTCTGCGGTT+GGG | + | chr3_4:76529040-76529059 | Msa0523200:intron | 45.0% |
| !! | GTTGGGCGCTGAATTTAAAG+TGG | + | chr3_4:76529057-76529076 | Msa0523200:intron | 45.0% |
| GGTTCAGTTTGAAGAAGTGG+AGG | - | chr3_4:76529549-76529568 | None:intergenic | 45.0% | |
| CAAACTGAACCCAACCAAAG+AGG | + | chr3_4:76529558-76529577 | Msa0523200:CDS | 45.0% | |
| CTTGAGTGTGGACATACCTA+AGG | - | chr3_4:76529789-76529808 | None:intergenic | 45.0% | |
| !! | ATGATGGGCCTTATTCACAG+GGG | + | chr3_4:76530282-76530301 | Msa0523200:intron | 45.0% |
| CATCACATCCCCTGTGAATA+AGG | - | chr3_4:76530293-76530312 | None:intergenic | 45.0% | |
| CTTATTCACAGGGGATGTGA+TGG | + | chr3_4:76530291-76530310 | Msa0523200:intron | 45.0% | |
| CATACCAGATGCGTAAAAGC+AGG | - | chr3_4:76530411-76530430 | None:intergenic | 45.0% | |
| ACCGATTAGACATTGCACCT+AGG | + | chr3_4:76530564-76530583 | Msa0523200:intron | 45.0% | |
| ACATTGCACCTAGGAATCTC+CGG | + | chr3_4:76530573-76530592 | Msa0523200:intron | 45.0% | |
| ACCAGTGTATAAGGTTCGCT+AGG | + | chr3_4:76531249-76531268 | Msa0523200:intron | 45.0% | |
| ACCTAGCGAACCTTATACAC+TGG | - | chr3_4:76531253-76531272 | None:intergenic | 45.0% | |
| GGAGCTTATAAGAAACCTGG+AGG | + | chr3_4:76531354-76531373 | Msa0523200:CDS | 45.0% | |
| AGAAAAAGGACCTGGAAGCA+TGG | - | chr3_4:76531520-76531539 | None:intergenic | 45.0% | |
| AAGTTGAATCCCACCTCATC+AGG | - | chr3_4:76531673-76531692 | None:intergenic | 45.0% | |
| GACTTCTCACTCAAATGAGC+AGG | + | chr3_4:76531734-76531753 | Msa0523200:intron | 45.0% | |
| AGGAATTAGGCTTCCACCAA+AGG | + | chr3_4:76531754-76531773 | Msa0523200:intron | 45.0% | |
| TCATTCTGTACTGCCTTTGG+TGG | - | chr3_4:76531770-76531789 | None:intergenic | 45.0% | |
| GCGAACTTAAACTCCCAGAA+GGG | - | chr3_4:76532108-76532127 | None:intergenic | 45.0% | |
| AGCGAACTTAAACTCCCAGA+AGG | - | chr3_4:76532109-76532128 | None:intergenic | 45.0% | |
| AATTCGGTTAGGCCAACTTG+GGG | - | chr3_4:76532314-76532333 | None:intergenic | 45.0% | |
| CAATTCGGTTAGGCCAACTT+GGG | - | chr3_4:76532315-76532334 | None:intergenic | 45.0% | |
| ACAATTCGGTTAGGCCAACT+TGG | - | chr3_4:76532316-76532335 | None:intergenic | 45.0% | |
| ! | AAGTTGGCCTAACCGAATTG+TGG | + | chr3_4:76532315-76532334 | Msa0523200:CDS | 45.0% |
| ! | AGTTGGCCTAACCGAATTGT+GGG | + | chr3_4:76532316-76532335 | Msa0523200:CDS | 45.0% |
| TGCACTTGTGCTGAACAAAG+AGG | - | chr3_4:76532452-76532471 | None:intergenic | 45.0% | |
| TTGTTCAGCACAAGTGCAGT+TGG | + | chr3_4:76532454-76532473 | Msa0523200:three_prime_UTR | 45.0% | |
| ! | GTAGGCATCGCTGACATATA+TGG | + | chr3_4:76532541-76532560 | Msa0523200:three_prime_UTR | 45.0% |
| !! | TAAATAGTATATAAAAAATA+TGG | - | chr3_4:76530483-76530502 | None:intergenic | 5.0% |
| !! | AATAAAGAAAAAAAAAATTA+GGG | - | chr3_4:76531860-76531879 | None:intergenic | 5.0% |
| !! | TAATAAAGAAAAAAAAAATT+AGG | - | chr3_4:76531861-76531880 | None:intergenic | 5.0% |
| TGCCTGGCTACCTACGTAAT+AGG | + | chr3_4:76528538-76528557 | Msa0523200:five_prime_UTR | 50.0% | |
| GCTCGATGGTTCGTATTAGC+AGG | + | chr3_4:76529997-76530016 | Msa0523200:intron | 50.0% | |
| ACTTGATGCTCCAGTTCTCG+TGG | - | chr3_4:76530324-76530343 | None:intergenic | 50.0% | |
| CAGTACAGTTAAGGCTGCTG+AGG | + | chr3_4:76530645-76530664 | Msa0523200:intron | 50.0% | |
| GCTGCTGAGGATGATAACAG+TGG | + | chr3_4:76530658-76530677 | Msa0523200:intron | 50.0% | |
| CTGGAGGAAGGTGAAAACAC+CGG | + | chr3_4:76531370-76531389 | Msa0523200:CDS | 50.0% | |
| TGGAGGAAGGTGAAAACACC+GGG | + | chr3_4:76531371-76531390 | Msa0523200:CDS | 50.0% | |
| TCTTACCCTTCCATGCTTCC+AGG | + | chr3_4:76531507-76531526 | Msa0523200:CDS | 50.0% | |
| ! | AAGGACCTGGAAGCATGGAA+GGG | - | chr3_4:76531515-76531534 | None:intergenic | 50.0% |
| ! | AAAGGACCTGGAAGCATGGA+AGG | - | chr3_4:76531516-76531535 | None:intergenic | 50.0% |
| AATCCCACCTCATCAGGATC+GGG | - | chr3_4:76531667-76531686 | None:intergenic | 50.0% | |
| GAATCCCACCTCATCAGGAT+CGG | - | chr3_4:76531668-76531687 | None:intergenic | 50.0% | |
| CAAGCACGACCACAAGTTTG+AGG | + | chr3_4:76531979-76531998 | Msa0523200:CDS | 50.0% | |
| CACTCACAGCCTCAAACTTG+TGG | - | chr3_4:76531991-76532010 | None:intergenic | 50.0% | |
| GATCCATCACGGAGTAGCAA+CGG | + | chr3_4:76532031-76532050 | Msa0523200:CDS | 50.0% | |
| ! | TCGCTTGACTCAGAGGCTTT+TGG | + | chr3_4:76532124-76532143 | Msa0523200:CDS | 50.0% |
| ! | GTTGGCCTAACCGAATTGTG+GGG | + | chr3_4:76532317-76532336 | Msa0523200:CDS | 50.0% |
| TTGGCCTAACCGAATTGTGG+GGG | + | chr3_4:76532318-76532337 | Msa0523200:CDS | 50.0% | |
| TCTACCCCCACAATTCGGTT+AGG | - | chr3_4:76532325-76532344 | None:intergenic | 50.0% | |
| !! | TGAGGGTTTTAGCGGCAGGA+AGG | - | chr3_4:76528624-76528643 | None:intergenic | 55.0% |
| !! | TGAGTGAGGGTTTTAGCGGC+AGG | - | chr3_4:76528628-76528647 | None:intergenic | 55.0% |
| TGGACTTGAGCCACGAGAAC+TGG | + | chr3_4:76530311-76530330 | Msa0523200:CDS | 55.0% | |
| ! | CGGTGTTTTCACCTTCCTCC+AGG | - | chr3_4:76531372-76531391 | None:intergenic | 55.0% |
| ATCCCACCTCATCAGGATCG+GGG | - | chr3_4:76531666-76531685 | None:intergenic | 55.0% | |
| GAGTAGCAACGGCTGCAGAA+TGG | + | chr3_4:76532042-76532061 | Msa0523200:CDS | 55.0% | |
| TAGCAACGGCTGCAGAATGG+AGG | + | chr3_4:76532045-76532064 | Msa0523200:CDS | 55.0% | |
| AGCAACGGCTGCAGAATGGA+GGG | + | chr3_4:76532046-76532065 | Msa0523200:CDS | 55.0% | |
| TGAGGTCCCCGATCCTGATG+AGG | + | chr3_4:76531657-76531676 | Msa0523200:CDS | 60.0% | |
| GTCCCCGATCCTGATGAGGT+GGG | + | chr3_4:76531661-76531680 | Msa0523200:intron | 60.0% | |
| TGAGGCTGTGAGTGCCAAGC+AGG | + | chr3_4:76531997-76532016 | Msa0523200:CDS | 60.0% | |
| CAGCCGTTGCTACTCCGTGA+TGG | - | chr3_4:76532037-76532056 | None:intergenic | 60.0% | |
| ! | GGCTGCAGAATGGAGGGTGT+GGG | + | chr3_4:76532052-76532071 | Msa0523200:CDS | 60.0% |
| GGTCCCCGATCCTGATGAGG+TGG | + | chr3_4:76531660-76531679 | Msa0523200:intron | 65.0% | |
| CGGCTGCAGAATGGAGGGTG+TGG | + | chr3_4:76532051-76532070 | Msa0523200:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 76528393 | 76532605 | 76528393 | ID=Msa0523200;Name=Msa0523200 |
| chr3_4 | mRNA | 76528393 | 76532605 | 76528393 | ID=Msa0523200-mRNA-1;Parent=Msa0523200;Name=Msa0523200-mRNA-1;_AED=0.13;_eAED=0.13;_QI=324|1|1|1|1|1|13|262|367 |
| chr3_4 | exon | 76528393 | 76528797 | 76528393 | ID=Msa0523200-mRNA-1:exon:22199;Parent=Msa0523200-mRNA-1 |
| chr3_4 | exon | 76529456 | 76529645 | 76529456 | ID=Msa0523200-mRNA-1:exon:22200;Parent=Msa0523200-mRNA-1 |
| chr3_4 | exon | 76529747 | 76529791 | 76529747 | ID=Msa0523200-mRNA-1:exon:22201;Parent=Msa0523200-mRNA-1 |
| chr3_4 | exon | 76529882 | 76529967 | 76529882 | ID=Msa0523200-mRNA-1:exon:22202;Parent=Msa0523200-mRNA-1 |
| chr3_4 | exon | 76530116 | 76530204 | 76530116 | ID=Msa0523200-mRNA-1:exon:22203;Parent=Msa0523200-mRNA-1 |
| chr3_4 | exon | 76530302 | 76530356 | 76530302 | ID=Msa0523200-mRNA-1:exon:22204;Parent=Msa0523200-mRNA-1 |
| chr3_4 | exon | 76531209 | 76531261 | 76531209 | ID=Msa0523200-mRNA-1:exon:22205;Parent=Msa0523200-mRNA-1 |
| chr3_4 | exon | 76531345 | 76531395 | 76531345 | ID=Msa0523200-mRNA-1:exon:22206;Parent=Msa0523200-mRNA-1 |
| chr3_4 | exon | 76531480 | 76531528 | 76531480 | ID=Msa0523200-mRNA-1:exon:22207;Parent=Msa0523200-mRNA-1 |
| chr3_4 | exon | 76531613 | 76531678 | 76531613 | ID=Msa0523200-mRNA-1:exon:22208;Parent=Msa0523200-mRNA-1 |
| chr3_4 | exon | 76531756 | 76531832 | 76531756 | ID=Msa0523200-mRNA-1:exon:22209;Parent=Msa0523200-mRNA-1 |
| chr3_4 | exon | 76531979 | 76532177 | 76531979 | ID=Msa0523200-mRNA-1:exon:22210;Parent=Msa0523200-mRNA-1 |
| chr3_4 | exon | 76532281 | 76532605 | 76532281 | ID=Msa0523200-mRNA-1:exon:22211;Parent=Msa0523200-mRNA-1 |
| chr3_4 | five_prime_UTR | 76528393 | 76528716 | 76528393 | ID=Msa0523200-mRNA-1:five_prime_utr;Parent=Msa0523200-mRNA-1 |
| chr3_4 | CDS | 76528717 | 76528797 | 76528717 | ID=Msa0523200-mRNA-1:cds;Parent=Msa0523200-mRNA-1 |
| chr3_4 | CDS | 76529456 | 76529645 | 76529456 | ID=Msa0523200-mRNA-1:cds;Parent=Msa0523200-mRNA-1 |
| chr3_4 | CDS | 76529747 | 76529791 | 76529747 | ID=Msa0523200-mRNA-1:cds;Parent=Msa0523200-mRNA-1 |
| chr3_4 | CDS | 76529882 | 76529967 | 76529882 | ID=Msa0523200-mRNA-1:cds;Parent=Msa0523200-mRNA-1 |
| chr3_4 | CDS | 76530116 | 76530204 | 76530116 | ID=Msa0523200-mRNA-1:cds;Parent=Msa0523200-mRNA-1 |
| chr3_4 | CDS | 76530302 | 76530356 | 76530302 | ID=Msa0523200-mRNA-1:cds;Parent=Msa0523200-mRNA-1 |
| chr3_4 | CDS | 76531209 | 76531261 | 76531209 | ID=Msa0523200-mRNA-1:cds;Parent=Msa0523200-mRNA-1 |
| chr3_4 | CDS | 76531345 | 76531395 | 76531345 | ID=Msa0523200-mRNA-1:cds;Parent=Msa0523200-mRNA-1 |
| chr3_4 | CDS | 76531480 | 76531528 | 76531480 | ID=Msa0523200-mRNA-1:cds;Parent=Msa0523200-mRNA-1 |
| chr3_4 | CDS | 76531613 | 76531678 | 76531613 | ID=Msa0523200-mRNA-1:cds;Parent=Msa0523200-mRNA-1 |
| chr3_4 | CDS | 76531756 | 76531832 | 76531756 | ID=Msa0523200-mRNA-1:cds;Parent=Msa0523200-mRNA-1 |
| chr3_4 | CDS | 76531979 | 76532177 | 76531979 | ID=Msa0523200-mRNA-1:cds;Parent=Msa0523200-mRNA-1 |
| chr3_4 | CDS | 76532281 | 76532343 | 76532281 | ID=Msa0523200-mRNA-1:cds;Parent=Msa0523200-mRNA-1 |
| chr3_4 | three_prime_UTR | 76532344 | 76532605 | 76532344 | ID=Msa0523200-mRNA-1:three_prime_utr;Parent=Msa0523200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
