Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523860 | AES92029.1 | 81.356 | 236 | 33 | 1 | 1 | 236 | 1 | 225 | 3.28e-137 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523860 | G7JQ00 | 81.356 | 236 | 33 | 1 | 1 | 236 | 1 | 225 | 1.57e-137 | 394 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0523860 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523860 | MtrunA17_Chr5g0393501 | 31.507 | 219 | 136 | 3 | 20 | 235 | 34 | 241 | 1.30e-30 | 113 |
| Msa0523860 | MtrunA17_Chr4g0044671 | 28.019 | 207 | 138 | 2 | 16 | 222 | 13 | 208 | 1.14e-19 | 84.3 |
| Msa0523860 | MtrunA17_Chr4g0034781 | 27.536 | 207 | 139 | 2 | 16 | 222 | 7 | 202 | 1.82e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAACTTTAGTGGTAAAATT+TGG | 0.131735 | 3_4:+77318145 | None:intergenic |
| TAACTTTAGTGGTAAAATTT+GGG | 0.245976 | 3_4:+77318146 | None:intergenic |
| TTGAAGTTCCTATCTGGATA+TGG | 0.289906 | 3_4:-77317605 | Msa0523860:CDS |
| CACAGTGCATGTAGAAAATC+AGG | 0.323162 | 3_4:-77318110 | Msa0523860:intron |
| GTACCTTTGAAGTTCCTATC+TGG | 0.333773 | 3_4:-77317611 | Msa0523860:CDS |
| AGGAATTTGCCGAAAGTATC+AGG | 0.335653 | 3_4:+77317459 | None:intergenic |
| AATCGTGATGTTTCACTCTA+AGG | 0.341127 | 3_4:+77317439 | None:intergenic |
| ATAGGAAGATATGCGTTTAA+AGG | 0.361554 | 3_4:-77318179 | None:intergenic |
| TAGGAACTACCTGATACTTT+CGG | 0.400617 | 3_4:-77317468 | Msa0523860:CDS |
| TCCGAACATCACATTTGGTA+TGG | 0.417548 | 3_4:+77317353 | None:intergenic |
| ATCTACTTCCACCAAGGTAC+TGG | 0.428620 | 3_4:+77317718 | None:intergenic |
| GAACGAACATATAACTTTAG+TGG | 0.431686 | 3_4:+77318135 | None:intergenic |
| CCGAACATCACATTTGGTAT+GGG | 0.451435 | 3_4:+77317354 | None:intergenic |
| GAGCAATGGCACTTGCTAGA+TGG | 0.455163 | 3_4:-77317858 | Msa0523860:CDS |
| TTGTGCTGCCAATGGTATTG+AGG | 0.463000 | 3_4:-77317313 | Msa0523860:CDS |
| AAATATTTAGCAACAAAGAA+TGG | 0.465634 | 3_4:+77317894 | None:intergenic |
| CCAAATGTGATGTTCGGAAA+AGG | 0.475440 | 3_4:-77317348 | Msa0523860:CDS |
| TGCCGCACTCATGGAATGAT+AGG | 0.476633 | 3_4:+77317647 | None:intergenic |
| CCCATACCAAATGTGATGTT+CGG | 0.477035 | 3_4:-77317354 | Msa0523860:CDS |
| TCGTCGATCCATATCCAGAT+AGG | 0.486078 | 3_4:+77317597 | None:intergenic |
| GGCCGTTGTTGACAGATGGT+TGG | 0.487397 | 3_4:-77317791 | Msa0523860:CDS |
| ACACGATGTTGCCGCACTCA+TGG | 0.490628 | 3_4:+77317638 | None:intergenic |
| GTCATGCGTTTATCAACGCT+TGG | 0.500774 | 3_4:+77317230 | None:intergenic |
| TGTGCTGCCAATGGTATTGA+GGG | 0.501205 | 3_4:-77317312 | Msa0523860:CDS |
| CACGATTACGTCATGTTGTA+CGG | 0.501494 | 3_4:-77317423 | Msa0523860:CDS |
| TAAATATTTCTACGAGCTAC+CGG | 0.507354 | 3_4:-77317880 | Msa0523860:CDS |
| ATTATTGCTTTCCAGTACCT+TGG | 0.508515 | 3_4:-77317729 | Msa0523860:CDS |
| AACTTTAGTGGTAAAATTTG+GGG | 0.508761 | 3_4:+77318147 | None:intergenic |
| TGATAGGGTGGATAATCAGT+TGG | 0.521361 | 3_4:+77317663 | None:intergenic |
| ACAGGAATGATATTGTCATA+AGG | 0.528831 | 3_4:+77317399 | None:intergenic |
| AGTCGGCCGTTGTTGACAGA+TGG | 0.531450 | 3_4:-77317795 | Msa0523860:CDS |
| TCTAGCAAGTGCCATTGCTC+CGG | 0.534587 | 3_4:+77317861 | None:intergenic |
| ATTGCTTTCCAGTACCTTGG+TGG | 0.549152 | 3_4:-77317726 | Msa0523860:CDS |
| CGAACATCACATTTGGTATG+GGG | 0.552019 | 3_4:+77317355 | None:intergenic |
| GTCTCCGCCCTCAATACCAT+TGG | 0.581950 | 3_4:+77317305 | None:intergenic |
| CTGACTAACTTCTAGGATGT+CGG | 0.584798 | 3_4:-77317927 | Msa0523860:intron |
| TGGCACTTGCTAGATGGTGA+TGG | 0.587936 | 3_4:-77317852 | Msa0523860:CDS |
| TATCCAGATAGGAACTTCAA+AGG | 0.596572 | 3_4:+77317608 | None:intergenic |
| ATGTGATGTTCGGAAAAGGT+TGG | 0.606400 | 3_4:-77317344 | Msa0523860:CDS |
| GGCACTTGCTAGATGGTGAT+GGG | 0.608333 | 3_4:-77317851 | Msa0523860:CDS |
| TGTTCAACAAATCAGTTAGT+CGG | 0.609582 | 3_4:-77317812 | Msa0523860:CDS |
| TCTACGAGCTACCGGAGCAA+TGG | 0.612965 | 3_4:-77317872 | Msa0523860:CDS |
| ACTTTAGTGGTAAAATTTGG+GGG | 0.613670 | 3_4:+77318148 | None:intergenic |
| ACCCTATCATTCCATGAGTG+CGG | 0.636716 | 3_4:-77317649 | Msa0523860:CDS |
| GCCGCACTCATGGAATGATA+GGG | 0.643165 | 3_4:+77317648 | None:intergenic |
| TTTCAAGTACAAGTGTGTCG+TGG | 0.648578 | 3_4:-77317274 | Msa0523860:CDS |
| GCACTCATGGAATGATAGGG+TGG | 0.649652 | 3_4:+77317651 | None:intergenic |
| TTTGAAATCTACTTCCACCA+AGG | 0.681040 | 3_4:+77317712 | None:intergenic |
| CTCCAACCATCTGTCAACAA+CGG | 0.696054 | 3_4:+77317789 | None:intergenic |
| TGGATCGACGAAATCACCGA+AGG | 0.700849 | 3_4:-77317585 | Msa0523860:CDS |
| GCTGCCAATGGTATTGAGGG+CGG | 0.739556 | 3_4:-77317309 | Msa0523860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCTATTTAAATATGATGA+AGG | - | chr3_4:77317350-77317369 | Msa0523860:CDS | 15.0% |
| !! | TTCTATTTAAATATGATGAA+GGG | - | chr3_4:77317351-77317370 | Msa0523860:CDS | 15.0% |
| !! | GTTTATATATGCTATAATAA+AGG | - | chr3_4:77317883-77317902 | Msa0523860:CDS | 15.0% |
| !!! | CAGTTTTTTTTCTTTTTTTT+AGG | - | chr3_4:77317924-77317943 | Msa0523860:intron | 15.0% |
| !! | TTTCTATTTAAATATGATGA+AGG | - | chr3_4:77317350-77317369 | Msa0523860:CDS | 15.0% |
| !! | TTCTATTTAAATATGATGAA+GGG | - | chr3_4:77317351-77317370 | Msa0523860:CDS | 15.0% |
| !! | GTTTATATATGCTATAATAA+AGG | - | chr3_4:77317883-77317902 | Msa0523860:CDS | 15.0% |
| !!! | CAGTTTTTTTTCTTTTTTTT+AGG | - | chr3_4:77317924-77317943 | Msa0523860:intron | 15.0% |
| !! | TAACTTTAGTGGTAAAATTT+GGG | + | chr3_4:77317268-77317287 | None:intergenic | 20.0% |
| !! | ATAACTTTAGTGGTAAAATT+TGG | + | chr3_4:77317269-77317288 | None:intergenic | 20.0% |
| !!! | ATGAAAATTAAATCCTCTTT+TGG | - | chr3_4:77317396-77317415 | Msa0523860:CDS | 20.0% |
| !! | AAATATTTAGCAACAAAGAA+TGG | + | chr3_4:77317520-77317539 | None:intergenic | 20.0% |
| !! | AAAAAACAATAAACAACCTT+CGG | + | chr3_4:77317845-77317864 | None:intergenic | 20.0% |
| !!! | TTTTTATGCTATTCATTTAG+AGG | - | chr3_4:77317861-77317880 | Msa0523860:CDS | 20.0% |
| !! | TAACTTTAGTGGTAAAATTT+GGG | + | chr3_4:77317268-77317287 | None:intergenic | 20.0% |
| !! | ATAACTTTAGTGGTAAAATT+TGG | + | chr3_4:77317269-77317288 | None:intergenic | 20.0% |
| !!! | ATGAAAATTAAATCCTCTTT+TGG | - | chr3_4:77317396-77317415 | Msa0523860:CDS | 20.0% |
| !! | AAATATTTAGCAACAAAGAA+TGG | + | chr3_4:77317520-77317539 | None:intergenic | 20.0% |
| !! | AAAAAACAATAAACAACCTT+CGG | + | chr3_4:77317845-77317864 | None:intergenic | 20.0% |
| !!! | TTTTTATGCTATTCATTTAG+AGG | - | chr3_4:77317861-77317880 | Msa0523860:CDS | 20.0% |
| ! | AACTTTAGTGGTAAAATTTG+GGG | + | chr3_4:77317267-77317286 | None:intergenic | 25.0% |
| !! | AAATTAAATCCTCTTTTGGT+TGG | - | chr3_4:77317400-77317419 | Msa0523860:CDS | 25.0% |
| ! | ATATTAAATCCAACCAAAAG+AGG | + | chr3_4:77317412-77317431 | None:intergenic | 25.0% |
| !!! | TCTGTATATTTTAATCTCAC+AGG | + | chr3_4:77318033-77318052 | None:intergenic | 25.0% |
| ! | AACTTTAGTGGTAAAATTTG+GGG | + | chr3_4:77317267-77317286 | None:intergenic | 25.0% |
| !! | AAATTAAATCCTCTTTTGGT+TGG | - | chr3_4:77317400-77317419 | Msa0523860:CDS | 25.0% |
| ! | ATATTAAATCCAACCAAAAG+AGG | + | chr3_4:77317412-77317431 | None:intergenic | 25.0% |
| !!! | TCTGTATATTTTAATCTCAC+AGG | + | chr3_4:77318033-77318052 | None:intergenic | 25.0% |
| ACTTTAGTGGTAAAATTTGG+GGG | + | chr3_4:77317266-77317285 | None:intergenic | 30.0% | |
| GAACGAACATATAACTTTAG+TGG | + | chr3_4:77317279-77317298 | None:intergenic | 30.0% | |
| TCATGCACATAATACGTTTA+CGG | + | chr3_4:77317380-77317399 | None:intergenic | 30.0% | |
| ! | TAATACACTGACTAACTTCT+AGG | - | chr3_4:77317477-77317496 | Msa0523860:intron | 30.0% |
| ! | TAAATATTTCTACGAGCTAC+CGG | - | chr3_4:77317531-77317550 | Msa0523860:intron | 30.0% |
| TGTTCAACAAATCAGTTAGT+CGG | - | chr3_4:77317599-77317618 | Msa0523860:CDS | 30.0% | |
| ACAGGAATGATATTGTCATA+AGG | + | chr3_4:77318015-77318034 | None:intergenic | 30.0% | |
| ACTTTAGTGGTAAAATTTGG+GGG | + | chr3_4:77317266-77317285 | None:intergenic | 30.0% | |
| GAACGAACATATAACTTTAG+TGG | + | chr3_4:77317279-77317298 | None:intergenic | 30.0% | |
| TCATGCACATAATACGTTTA+CGG | + | chr3_4:77317380-77317399 | None:intergenic | 30.0% | |
| ! | TAATACACTGACTAACTTCT+AGG | - | chr3_4:77317477-77317496 | Msa0523860:intron | 30.0% |
| ! | TAAATATTTCTACGAGCTAC+CGG | - | chr3_4:77317531-77317550 | Msa0523860:intron | 30.0% |
| TGTTCAACAAATCAGTTAGT+CGG | - | chr3_4:77317599-77317618 | Msa0523860:CDS | 30.0% | |
| ACAGGAATGATATTGTCATA+AGG | + | chr3_4:77318015-77318034 | None:intergenic | 30.0% | |
| ATTATTGCTTTCCAGTACCT+TGG | - | chr3_4:77317682-77317701 | Msa0523860:CDS | 35.0% | |
| ! | TTTGAAATCTACTTCCACCA+AGG | + | chr3_4:77317702-77317721 | None:intergenic | 35.0% |
| TATCCAGATAGGAACTTCAA+AGG | + | chr3_4:77317806-77317825 | None:intergenic | 35.0% | |
| TTGAAGTTCCTATCTGGATA+TGG | - | chr3_4:77317806-77317825 | Msa0523860:CDS | 35.0% | |
| TAGGAACTACCTGATACTTT+CGG | - | chr3_4:77317943-77317962 | Msa0523860:intron | 35.0% | |
| AATCGTGATGTTTCACTCTA+AGG | + | chr3_4:77317975-77317994 | None:intergenic | 35.0% | |
| ATTATTGCTTTCCAGTACCT+TGG | - | chr3_4:77317682-77317701 | Msa0523860:CDS | 35.0% | |
| ! | TTTGAAATCTACTTCCACCA+AGG | + | chr3_4:77317702-77317721 | None:intergenic | 35.0% |
| TATCCAGATAGGAACTTCAA+AGG | + | chr3_4:77317806-77317825 | None:intergenic | 35.0% | |
| TTGAAGTTCCTATCTGGATA+TGG | - | chr3_4:77317806-77317825 | Msa0523860:CDS | 35.0% | |
| TAGGAACTACCTGATACTTT+CGG | - | chr3_4:77317943-77317962 | Msa0523860:intron | 35.0% | |
| AATCGTGATGTTTCACTCTA+AGG | + | chr3_4:77317975-77317994 | None:intergenic | 35.0% | |
| CACAGTGCATGTAGAAAATC+AGG | - | chr3_4:77317301-77317320 | Msa0523860:CDS | 40.0% | |
| !! | CTGACTAACTTCTAGGATGT+CGG | - | chr3_4:77317484-77317503 | Msa0523860:intron | 40.0% |
| TGATAGGGTGGATAATCAGT+TGG | + | chr3_4:77317751-77317770 | None:intergenic | 40.0% | |
| !! | GTACCTTTGAAGTTCCTATC+TGG | - | chr3_4:77317800-77317819 | Msa0523860:CDS | 40.0% |
| !! | AGGAATTTGCCGAAAGTATC+AGG | + | chr3_4:77317955-77317974 | None:intergenic | 40.0% |
| CACGATTACGTCATGTTGTA+CGG | - | chr3_4:77317988-77318007 | Msa0523860:intron | 40.0% | |
| CGAACATCACATTTGGTATG+GGG | + | chr3_4:77318059-77318078 | None:intergenic | 40.0% | |
| CCGAACATCACATTTGGTAT+GGG | + | chr3_4:77318060-77318079 | None:intergenic | 40.0% | |
| CCCATACCAAATGTGATGTT+CGG | - | chr3_4:77318057-77318076 | Msa0523860:intron | 40.0% | |
| TCCGAACATCACATTTGGTA+TGG | + | chr3_4:77318061-77318080 | None:intergenic | 40.0% | |
| ! | CCTTTTCCGAACATCACATT+TGG | + | chr3_4:77318066-77318085 | None:intergenic | 40.0% |
| CCAAATGTGATGTTCGGAAA+AGG | - | chr3_4:77318063-77318082 | Msa0523860:intron | 40.0% | |
| ATGTGATGTTCGGAAAAGGT+TGG | - | chr3_4:77318067-77318086 | Msa0523860:intron | 40.0% | |
| ! | TTTCAAGTACAAGTGTGTCG+TGG | - | chr3_4:77318137-77318156 | Msa0523860:CDS | 40.0% |
| CACAGTGCATGTAGAAAATC+AGG | - | chr3_4:77317301-77317320 | Msa0523860:CDS | 40.0% | |
| !! | CTGACTAACTTCTAGGATGT+CGG | - | chr3_4:77317484-77317503 | Msa0523860:intron | 40.0% |
| TGATAGGGTGGATAATCAGT+TGG | + | chr3_4:77317751-77317770 | None:intergenic | 40.0% | |
| !! | GTACCTTTGAAGTTCCTATC+TGG | - | chr3_4:77317800-77317819 | Msa0523860:CDS | 40.0% |
| !! | AGGAATTTGCCGAAAGTATC+AGG | + | chr3_4:77317955-77317974 | None:intergenic | 40.0% |
| CACGATTACGTCATGTTGTA+CGG | - | chr3_4:77317988-77318007 | Msa0523860:intron | 40.0% | |
| CGAACATCACATTTGGTATG+GGG | + | chr3_4:77318059-77318078 | None:intergenic | 40.0% | |
| CCGAACATCACATTTGGTAT+GGG | + | chr3_4:77318060-77318079 | None:intergenic | 40.0% | |
| CCCATACCAAATGTGATGTT+CGG | - | chr3_4:77318057-77318076 | Msa0523860:intron | 40.0% | |
| TCCGAACATCACATTTGGTA+TGG | + | chr3_4:77318061-77318080 | None:intergenic | 40.0% | |
| ! | CCTTTTCCGAACATCACATT+TGG | + | chr3_4:77318066-77318085 | None:intergenic | 40.0% |
| CCAAATGTGATGTTCGGAAA+AGG | - | chr3_4:77318063-77318082 | Msa0523860:intron | 40.0% | |
| ATGTGATGTTCGGAAAAGGT+TGG | - | chr3_4:77318067-77318086 | Msa0523860:intron | 40.0% | |
| ! | TTTCAAGTACAAGTGTGTCG+TGG | - | chr3_4:77318137-77318156 | Msa0523860:CDS | 40.0% |
| CTCCAACCATCTGTCAACAA+CGG | + | chr3_4:77317625-77317644 | None:intergenic | 45.0% | |
| ATTGCTTTCCAGTACCTTGG+TGG | - | chr3_4:77317685-77317704 | Msa0523860:CDS | 45.0% | |
| ATCTACTTCCACCAAGGTAC+TGG | + | chr3_4:77317696-77317715 | None:intergenic | 45.0% | |
| ACCCTATCATTCCATGAGTG+CGG | - | chr3_4:77317762-77317781 | Msa0523860:CDS | 45.0% | |
| TCGTCGATCCATATCCAGAT+AGG | + | chr3_4:77317817-77317836 | None:intergenic | 45.0% | |
| ! | ACGAGTTTTTGTGCTGCCAA+TGG | - | chr3_4:77318090-77318109 | Msa0523860:intron | 45.0% |
| TTGTGCTGCCAATGGTATTG+AGG | - | chr3_4:77318098-77318117 | Msa0523860:intron | 45.0% | |
| ! | TGTGCTGCCAATGGTATTGA+GGG | - | chr3_4:77318099-77318118 | Msa0523860:intron | 45.0% |
| CTCCAACCATCTGTCAACAA+CGG | + | chr3_4:77317625-77317644 | None:intergenic | 45.0% | |
| ATTGCTTTCCAGTACCTTGG+TGG | - | chr3_4:77317685-77317704 | Msa0523860:CDS | 45.0% | |
| ATCTACTTCCACCAAGGTAC+TGG | + | chr3_4:77317696-77317715 | None:intergenic | 45.0% | |
| ACCCTATCATTCCATGAGTG+CGG | - | chr3_4:77317762-77317781 | Msa0523860:CDS | 45.0% | |
| TCGTCGATCCATATCCAGAT+AGG | + | chr3_4:77317817-77317836 | None:intergenic | 45.0% | |
| ! | ACGAGTTTTTGTGCTGCCAA+TGG | - | chr3_4:77318090-77318109 | Msa0523860:intron | 45.0% |
| TTGTGCTGCCAATGGTATTG+AGG | - | chr3_4:77318098-77318117 | Msa0523860:intron | 45.0% | |
| ! | TGTGCTGCCAATGGTATTGA+GGG | - | chr3_4:77318099-77318118 | Msa0523860:intron | 45.0% |
| ! | TCTAGCAAGTGCCATTGCTC+CGG | + | chr3_4:77317553-77317572 | None:intergenic | 50.0% |
| ! | GAGCAATGGCACTTGCTAGA+TGG | - | chr3_4:77317553-77317572 | Msa0523860:CDS | 50.0% |
| ! | TGGCACTTGCTAGATGGTGA+TGG | - | chr3_4:77317559-77317578 | Msa0523860:CDS | 50.0% |
| ! | GGCACTTGCTAGATGGTGAT+GGG | - | chr3_4:77317560-77317579 | Msa0523860:CDS | 50.0% |
| GCACTCATGGAATGATAGGG+TGG | + | chr3_4:77317763-77317782 | None:intergenic | 50.0% | |
| GCCGCACTCATGGAATGATA+GGG | + | chr3_4:77317766-77317785 | None:intergenic | 50.0% | |
| TGCCGCACTCATGGAATGAT+AGG | + | chr3_4:77317767-77317786 | None:intergenic | 50.0% | |
| TGGATCGACGAAATCACCGA+AGG | - | chr3_4:77317826-77317845 | Msa0523860:CDS | 50.0% | |
| ! | TCTAGCAAGTGCCATTGCTC+CGG | + | chr3_4:77317553-77317572 | None:intergenic | 50.0% |
| ! | GAGCAATGGCACTTGCTAGA+TGG | - | chr3_4:77317553-77317572 | Msa0523860:CDS | 50.0% |
| ! | TGGCACTTGCTAGATGGTGA+TGG | - | chr3_4:77317559-77317578 | Msa0523860:CDS | 50.0% |
| ! | GGCACTTGCTAGATGGTGAT+GGG | - | chr3_4:77317560-77317579 | Msa0523860:CDS | 50.0% |
| GCACTCATGGAATGATAGGG+TGG | + | chr3_4:77317763-77317782 | None:intergenic | 50.0% | |
| GCCGCACTCATGGAATGATA+GGG | + | chr3_4:77317766-77317785 | None:intergenic | 50.0% | |
| TGCCGCACTCATGGAATGAT+AGG | + | chr3_4:77317767-77317786 | None:intergenic | 50.0% | |
| TGGATCGACGAAATCACCGA+AGG | - | chr3_4:77317826-77317845 | Msa0523860:CDS | 50.0% | |
| TCTACGAGCTACCGGAGCAA+TGG | - | chr3_4:77317539-77317558 | Msa0523860:intron | 55.0% | |
| AGTCGGCCGTTGTTGACAGA+TGG | - | chr3_4:77317616-77317635 | Msa0523860:CDS | 55.0% | |
| GGCCGTTGTTGACAGATGGT+TGG | - | chr3_4:77317620-77317639 | Msa0523860:CDS | 55.0% | |
| ACACGATGTTGCCGCACTCA+TGG | + | chr3_4:77317776-77317795 | None:intergenic | 55.0% | |
| ! | GCTGCCAATGGTATTGAGGG+CGG | - | chr3_4:77318102-77318121 | Msa0523860:intron | 55.0% |
| GTCTCCGCCCTCAATACCAT+TGG | + | chr3_4:77318109-77318128 | None:intergenic | 55.0% | |
| TCTACGAGCTACCGGAGCAA+TGG | - | chr3_4:77317539-77317558 | Msa0523860:intron | 55.0% | |
| AGTCGGCCGTTGTTGACAGA+TGG | - | chr3_4:77317616-77317635 | Msa0523860:CDS | 55.0% | |
| GGCCGTTGTTGACAGATGGT+TGG | - | chr3_4:77317620-77317639 | Msa0523860:CDS | 55.0% | |
| ACACGATGTTGCCGCACTCA+TGG | + | chr3_4:77317776-77317795 | None:intergenic | 55.0% | |
| ! | GCTGCCAATGGTATTGAGGG+CGG | - | chr3_4:77318102-77318121 | Msa0523860:intron | 55.0% |
| GTCTCCGCCCTCAATACCAT+TGG | + | chr3_4:77318109-77318128 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 77317242 | 77318191 | 77317242 | ID=Msa0523860;Name=Msa0523860 |
| chr3_4 | mRNA | 77317242 | 77318191 | 77317242 | ID=Msa0523860-mRNA-1;Parent=Msa0523860;Name=Msa0523860-mRNA-1;_AED=0.10;_eAED=0.22;_QI=0|0|0|1|1|1|3|0|236 |
| chr3_4 | exon | 77318111 | 77318191 | 77318111 | ID=Msa0523860-mRNA-1:exon:22657;Parent=Msa0523860-mRNA-1 |
| chr3_4 | exon | 77317551 | 77317934 | 77317551 | ID=Msa0523860-mRNA-1:exon:22656;Parent=Msa0523860-mRNA-1 |
| chr3_4 | exon | 77317242 | 77317487 | 77317242 | ID=Msa0523860-mRNA-1:exon:22655;Parent=Msa0523860-mRNA-1 |
| chr3_4 | CDS | 77318111 | 77318191 | 77318111 | ID=Msa0523860-mRNA-1:cds;Parent=Msa0523860-mRNA-1 |
| chr3_4 | CDS | 77317551 | 77317934 | 77317551 | ID=Msa0523860-mRNA-1:cds;Parent=Msa0523860-mRNA-1 |
| chr3_4 | CDS | 77317242 | 77317487 | 77317242 | ID=Msa0523860-mRNA-1:cds;Parent=Msa0523860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
