Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525670 | XP_013463424.1 | 98.140 | 215 | 4 | 0 | 1 | 215 | 1 | 215 | 7.00e-151 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525670 | sp|Q05466|HAT4_ARATH | 49.032 | 155 | 79 | 0 | 55 | 209 | 102 | 256 | 2.57e-42 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525670 | G7IIE0 | 98.140 | 215 | 4 | 0 | 1 | 215 | 1 | 215 | 3.34e-151 | 427 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0525670 | TF | HB-other |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525670 | MtrunA17_Chr2g0299031 | 98.140 | 215 | 4 | 0 | 1 | 215 | 1 | 215 | 6.44e-155 | 427 |
| Msa0525670 | MtrunA17_Chr4g0055851 | 44.886 | 176 | 97 | 0 | 37 | 212 | 75 | 250 | 2.75e-42 | 144 |
| Msa0525670 | MtrunA17_Chr8g0335131 | 61.062 | 113 | 44 | 0 | 82 | 194 | 146 | 258 | 5.33e-41 | 141 |
| Msa0525670 | MtrunA17_Chr5g0400781 | 57.937 | 126 | 52 | 1 | 72 | 197 | 113 | 237 | 5.65e-41 | 140 |
| Msa0525670 | MtrunA17_Chr5g0399491 | 53.077 | 130 | 61 | 0 | 70 | 199 | 124 | 253 | 8.26e-41 | 140 |
| Msa0525670 | MtrunA17_Chr7g0258831 | 55.396 | 139 | 58 | 2 | 60 | 195 | 135 | 272 | 1.25e-40 | 140 |
| Msa0525670 | MtrunA17_Chr1g0175651 | 56.296 | 135 | 49 | 3 | 66 | 195 | 137 | 266 | 4.52e-40 | 139 |
| Msa0525670 | MtrunA17_Chr4g0054421 | 56.061 | 132 | 55 | 2 | 65 | 195 | 110 | 239 | 4.54e-40 | 138 |
| Msa0525670 | MtrunA17_Chr2g0308611 | 60.870 | 115 | 42 | 2 | 82 | 195 | 200 | 312 | 7.24e-38 | 134 |
| Msa0525670 | MtrunA17_Chr1g0151971 | 49.677 | 155 | 74 | 3 | 49 | 199 | 94 | 248 | 2.52e-36 | 129 |
| Msa0525670 | MtrunA17_Chr4g0044091 | 50.847 | 118 | 53 | 1 | 82 | 194 | 65 | 182 | 3.27e-34 | 120 |
| Msa0525670 | MtrunA17_Chr4g0071411 | 42.308 | 208 | 100 | 5 | 11 | 201 | 7 | 211 | 4.22e-34 | 121 |
| Msa0525670 | MtrunA17_Chr3g0135331 | 55.906 | 127 | 53 | 2 | 69 | 195 | 133 | 256 | 2.03e-31 | 116 |
| Msa0525670 | MtrunA17_Chr5g0416391 | 37.273 | 110 | 66 | 1 | 60 | 169 | 58 | 164 | 5.50e-13 | 66.2 |
| Msa0525670 | MtrunA17_Chr1g0179581 | 43.373 | 83 | 47 | 0 | 82 | 164 | 28 | 110 | 1.65e-12 | 62.0 |
| Msa0525670 | MtrunA17_Chr6g0450991 | 42.045 | 88 | 51 | 0 | 82 | 169 | 67 | 154 | 2.52e-12 | 64.7 |
| Msa0525670 | MtrunA17_Chr7g0217111 | 42.268 | 97 | 52 | 1 | 79 | 171 | 77 | 173 | 3.55e-12 | 63.9 |
| Msa0525670 | MtrunA17_Chr5g0415941 | 40.000 | 95 | 50 | 1 | 81 | 168 | 86 | 180 | 4.11e-12 | 64.3 |
| Msa0525670 | MtrunA17_Chr7g0265521 | 32.667 | 150 | 91 | 4 | 27 | 169 | 4 | 150 | 4.72e-12 | 63.2 |
| Msa0525670 | MtrunA17_Chr3g0119291 | 42.105 | 95 | 48 | 1 | 82 | 169 | 59 | 153 | 6.02e-12 | 63.2 |
| Msa0525670 | MtrunA17_Chr8g0381741 | 40.336 | 119 | 58 | 4 | 76 | 181 | 43 | 161 | 1.05e-11 | 62.8 |
| Msa0525670 | MtrunA17_Chr8g0362751 | 41.053 | 95 | 49 | 1 | 81 | 168 | 88 | 182 | 3.89e-11 | 61.2 |
| Msa0525670 | MtrunA17_Chr4g0060031 | 40.909 | 88 | 52 | 0 | 82 | 169 | 95 | 182 | 3.92e-11 | 61.6 |
| Msa0525670 | MtrunA17_Chr8g0362151 | 36.697 | 109 | 65 | 2 | 60 | 168 | 59 | 163 | 4.02e-11 | 61.2 |
| Msa0525670 | MtrunA17_Chr6g0453021 | 40.196 | 102 | 57 | 1 | 72 | 169 | 82 | 183 | 5.35e-11 | 60.8 |
| Msa0525670 | MtrunA17_Chr3g0123691 | 36.441 | 118 | 65 | 3 | 63 | 173 | 43 | 157 | 7.23e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525670 | AT4G16780.1 | 49.032 | 155 | 79 | 0 | 55 | 209 | 102 | 256 | 2.61e-43 | 147 |
| Msa0525670 | AT4G17460.1 | 50.336 | 149 | 68 | 1 | 51 | 199 | 110 | 252 | 8.74e-42 | 143 |
| Msa0525670 | AT5G47370.1 | 57.627 | 118 | 50 | 0 | 82 | 199 | 130 | 247 | 4.15e-40 | 139 |
| Msa0525670 | AT3G60390.1 | 55.738 | 122 | 54 | 0 | 73 | 194 | 153 | 274 | 7.82e-40 | 139 |
| Msa0525670 | AT5G06710.1 | 56.452 | 124 | 53 | 1 | 72 | 195 | 180 | 302 | 1.18e-39 | 139 |
| Msa0525670 | AT4G37790.1 | 57.143 | 126 | 51 | 2 | 72 | 195 | 114 | 238 | 8.64e-39 | 135 |
| Msa0525670 | AT2G44910.1 | 57.895 | 114 | 48 | 0 | 82 | 195 | 163 | 276 | 1.32e-38 | 135 |
| Msa0525670 | AT2G22800.1 | 55.556 | 126 | 53 | 2 | 72 | 195 | 101 | 225 | 2.16e-37 | 131 |
| Msa0525670 | AT2G01430.1 | 54.386 | 114 | 49 | 1 | 82 | 195 | 139 | 249 | 5.10e-35 | 125 |
| Msa0525670 | AT1G70920.1 | 50.000 | 124 | 54 | 2 | 72 | 195 | 59 | 174 | 4.84e-29 | 108 |
| Msa0525670 | AT1G70920.2 | 50.000 | 124 | 54 | 2 | 72 | 195 | 29 | 144 | 5.52e-29 | 107 |
| Msa0525670 | AT5G06710.4 | 61.290 | 62 | 24 | 0 | 72 | 133 | 180 | 241 | 2.22e-18 | 81.6 |
| Msa0525670 | AT5G03790.1 | 42.574 | 101 | 58 | 0 | 70 | 170 | 65 | 165 | 1.85e-15 | 72.8 |
| Msa0525670 | AT2G01430.2 | 58.182 | 55 | 23 | 0 | 82 | 136 | 139 | 193 | 3.68e-14 | 68.9 |
| Msa0525670 | AT3G01220.1 | 32.738 | 168 | 101 | 3 | 52 | 212 | 57 | 219 | 2.27e-13 | 67.8 |
| Msa0525670 | AT5G03790.2 | 41.053 | 95 | 56 | 0 | 70 | 164 | 65 | 159 | 1.44e-12 | 64.3 |
| Msa0525670 | AT2G18550.1 | 33.333 | 144 | 89 | 2 | 69 | 211 | 48 | 185 | 2.19e-12 | 64.3 |
| Msa0525670 | AT4G36740.2 | 37.374 | 99 | 62 | 0 | 70 | 168 | 44 | 142 | 2.28e-12 | 64.3 |
| Msa0525670 | AT4G36740.1 | 37.374 | 99 | 62 | 0 | 70 | 168 | 43 | 141 | 2.46e-12 | 63.9 |
| Msa0525670 | AT3G01470.1 | 47.222 | 72 | 38 | 0 | 82 | 153 | 68 | 139 | 5.41e-12 | 63.9 |
| Msa0525670 | AT1G26960.1 | 40.909 | 88 | 52 | 0 | 82 | 169 | 71 | 158 | 1.83e-11 | 62.0 |
| Msa0525670 | AT2G46680.1 | 39.394 | 99 | 56 | 1 | 85 | 179 | 35 | 133 | 9.56e-11 | 60.1 |
Find 38 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACCTTGCTCTTCTGTTC+TGG | 0.227517 | 3_4:-79180006 | None:intergenic |
| GTTCATCATGCAAGAAAATA+TGG | 0.268795 | 3_4:+79180830 | Msa0525670:CDS |
| GATGATTGAGTTGTGTTTGA+TGG | 0.272598 | 3_4:-79180784 | None:intergenic |
| TAGCCTTTAATCTAACTCTA+TGG | 0.303061 | 3_4:-79180896 | None:intergenic |
| AATCATCTAAAGCTGCAAAT+TGG | 0.315157 | 3_4:+79180800 | Msa0525670:CDS |
| CTTAATCTTAAACTTGGATT+AGG | 0.319965 | 3_4:+79179459 | Msa0525670:CDS |
| CCATTGATTTGAACCATGAT+AGG | 0.325695 | 3_4:+79179538 | Msa0525670:CDS |
| GCACCATAGAGTTAGATTAA+AGG | 0.328032 | 3_4:+79180893 | Msa0525670:CDS |
| GGTTGATTCAAAAGAAGAAT+TGG | 0.345182 | 3_4:+79179515 | Msa0525670:CDS |
| AACTAAGTGAGGAGAATCTT+AGG | 0.353207 | 3_4:+79180719 | Msa0525670:CDS |
| AGCAAAGACAGGTTGAAGTT+TGG | 0.373329 | 3_4:+79179981 | Msa0525670:CDS |
| TGAGCACCCGTTGTTGTCAT+TGG | 0.382575 | 3_4:-79179637 | None:intergenic |
| AATAACAACATCCTCCTCAT+TGG | 0.419038 | 3_4:-79180857 | None:intergenic |
| TCAATTCATTTGCCCTATCA+TGG | 0.421387 | 3_4:-79179551 | None:intergenic |
| AATTGTGCTGTGACGCTTGA+AGG | 0.428719 | 3_4:-79179706 | None:intergenic |
| TTTCTTGCATGATGAACAAA+TGG | 0.440678 | 3_4:-79180824 | None:intergenic |
| ATAACAACATCCTCCTCATT+GGG | 0.441004 | 3_4:-79180856 | None:intergenic |
| ACACCACCAATGACAACAAC+GGG | 0.443518 | 3_4:+79179631 | Msa0525670:CDS |
| TTGGATCTTAATCTTAAACT+TGG | 0.447542 | 3_4:+79179453 | Msa0525670:CDS |
| AAACAATGTGAACAAACCTT+TGG | 0.458446 | 3_4:+79179494 | Msa0525670:CDS |
| ATTGAATTTAAAGCAAAGAC+AGG | 0.478696 | 3_4:+79179970 | Msa0525670:CDS |
| CCTATCATGGTTCAAATCAA+TGG | 0.487751 | 3_4:-79179538 | None:intergenic |
| GGAGAATCTTAGGTTGAAGA+AGG | 0.518622 | 3_4:+79180729 | Msa0525670:CDS |
| GCACCCGTTGTTGTCATTGG+TGG | 0.522365 | 3_4:-79179634 | None:intergenic |
| GAACTGCGTGCATTAAAAGT+TGG | 0.525263 | 3_4:+79180760 | Msa0525670:CDS |
| CATTGATTTGAACCATGATA+GGG | 0.530963 | 3_4:+79179539 | Msa0525670:CDS |
| AATCTAACTCTATGGTGCTG+TGG | 0.578396 | 3_4:-79180888 | None:intergenic |
| ACGGGTGCTCAAAGAAATTG+AGG | 0.587563 | 3_4:+79179649 | Msa0525670:CDS |
| TCATCACATGGCATGCACGT+TGG | 0.602607 | 3_4:+79179434 | Msa0525670:CDS |
| AGGTGAACTGTATATACTTG+AGG | 0.616263 | 3_4:+79180683 | Msa0525670:CDS |
| GAAAATATGGAAGCCCAATG+AGG | 0.640653 | 3_4:+79180843 | Msa0525670:CDS |
| GACACCACCAATGACAACAA+CGG | 0.643008 | 3_4:+79179630 | Msa0525670:CDS |
| GGTTCCAGAACAGAAGAGCA+AGG | 0.646687 | 3_4:+79180002 | Msa0525670:CDS |
| AATATGGAAGCCCAATGAGG+AGG | 0.651470 | 3_4:+79180846 | Msa0525670:CDS |
| ATGATCTTGATCATCATCCA+TGG | 0.675243 | 3_4:-79179415 | None:intergenic |
| ATGTCATGAGAAACTAAGTG+AGG | 0.678157 | 3_4:+79180708 | Msa0525670:CDS |
| TGATGATCAAGATCATCACA+TGG | 0.696569 | 3_4:+79179422 | Msa0525670:CDS |
| GACTAAGCTGAAACAAACAG+AGG | 0.748545 | 3_4:+79180663 | Msa0525670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTAATTATTAATTTTA+TGG | + | chr3_4:79179793-79179812 | Msa0525670:intron | 0.0% |
| !!! | TTTATTAATTATTAATTTTA+TGG | + | chr3_4:79179793-79179812 | Msa0525670:intron | 0.0% |
| !!! | TTTTCATTTATCAAAATTTA+AGG | + | chr3_4:79179886-79179905 | Msa0525670:intron | 10.0% |
| !! | TTTCATTTATCAAAATTTAA+GGG | + | chr3_4:79179887-79179906 | Msa0525670:intron | 10.0% |
| !!! | TTTTATTATTTTTTCTTTCA+TGG | + | chr3_4:79180067-79180086 | Msa0525670:intron | 10.0% |
| !!! | TTTTCATTTATCAAAATTTA+AGG | + | chr3_4:79179886-79179905 | Msa0525670:intron | 10.0% |
| !! | TTTCATTTATCAAAATTTAA+GGG | + | chr3_4:79179887-79179906 | Msa0525670:intron | 10.0% |
| !!! | TTTTATTATTTTTTCTTTCA+TGG | + | chr3_4:79180067-79180086 | Msa0525670:intron | 10.0% |
| !! | ATTCAAAGAGTAATATATTA+CGG | - | chr3_4:79179736-79179755 | None:intergenic | 15.0% |
| !!! | GAATTGATTTTTTTTTGTTT+CGG | + | chr3_4:79179909-79179928 | Msa0525670:intron | 15.0% |
| !!! | TTTCAAAAAATAATTTGTGT+TGG | + | chr3_4:79180250-79180269 | Msa0525670:intron | 15.0% |
| !! | ATAGTCAACAAATAATAAAT+TGG | - | chr3_4:79180284-79180303 | None:intergenic | 15.0% |
| !! | ATTCAAAGAGTAATATATTA+CGG | - | chr3_4:79179736-79179755 | None:intergenic | 15.0% |
| !!! | GAATTGATTTTTTTTTGTTT+CGG | + | chr3_4:79179909-79179928 | Msa0525670:intron | 15.0% |
| !!! | TTTCAAAAAATAATTTGTGT+TGG | + | chr3_4:79180250-79180269 | Msa0525670:intron | 15.0% |
| !! | ATAGTCAACAAATAATAAAT+TGG | - | chr3_4:79180284-79180303 | None:intergenic | 15.0% |
| !!! | TATGAATCATTTGGTTTAAT+TGG | + | chr3_4:79180025-79180044 | Msa0525670:intron | 20.0% |
| !!! | ATGAATCATTTGGTTTAATT+GGG | + | chr3_4:79180026-79180045 | Msa0525670:intron | 20.0% |
| !!! | ATGAAATTTTATAACTTGAG+TGG | - | chr3_4:79180389-79180408 | None:intergenic | 20.0% |
| !!! | AATTATACAATTGACTTTTC+AGG | + | chr3_4:79180641-79180660 | Msa0525670:intron | 20.0% |
| !!! | TATGAATCATTTGGTTTAAT+TGG | + | chr3_4:79180025-79180044 | Msa0525670:intron | 20.0% |
| !!! | ATGAATCATTTGGTTTAATT+GGG | + | chr3_4:79180026-79180045 | Msa0525670:intron | 20.0% |
| !!! | ATGAAATTTTATAACTTGAG+TGG | - | chr3_4:79180389-79180408 | None:intergenic | 20.0% |
| !!! | AATTATACAATTGACTTTTC+AGG | + | chr3_4:79180641-79180660 | Msa0525670:intron | 20.0% |
| ! | TTGGATCTTAATCTTAAACT+TGG | + | chr3_4:79179453-79179472 | Msa0525670:CDS | 25.0% |
| ! | CTTAATCTTAAACTTGGATT+AGG | + | chr3_4:79179459-79179478 | Msa0525670:CDS | 25.0% |
| !! | TTATGGAAGCTAATTTTGTA+TGG | + | chr3_4:79179810-79179829 | Msa0525670:intron | 25.0% |
| !! | ATTGAATTTAAAGCAAAGAC+AGG | + | chr3_4:79179970-79179989 | Msa0525670:CDS | 25.0% |
| ! | TTGACAGTTATATGAAATAG+AGG | + | chr3_4:79180517-79180536 | Msa0525670:intron | 25.0% |
| ! | TTGGATCTTAATCTTAAACT+TGG | + | chr3_4:79179453-79179472 | Msa0525670:CDS | 25.0% |
| ! | CTTAATCTTAAACTTGGATT+AGG | + | chr3_4:79179459-79179478 | Msa0525670:CDS | 25.0% |
| !! | TTATGGAAGCTAATTTTGTA+TGG | + | chr3_4:79179810-79179829 | Msa0525670:intron | 25.0% |
| !! | ATTGAATTTAAAGCAAAGAC+AGG | + | chr3_4:79179970-79179989 | Msa0525670:CDS | 25.0% |
| ! | TTGACAGTTATATGAAATAG+AGG | + | chr3_4:79180517-79180536 | Msa0525670:intron | 25.0% |
| AAACAATGTGAACAAACCTT+TGG | + | chr3_4:79179494-79179513 | Msa0525670:CDS | 30.0% | |
| ! | TCTTCTTTTGAATCAACCAA+AGG | - | chr3_4:79179513-79179532 | None:intergenic | 30.0% |
| ! | GGTTGATTCAAAAGAAGAAT+TGG | + | chr3_4:79179515-79179534 | Msa0525670:CDS | 30.0% |
| !! | CATTGATTTGAACCATGATA+GGG | + | chr3_4:79179539-79179558 | Msa0525670:CDS | 30.0% |
| ! | AATCATCTAAAGCTGCAAAT+TGG | + | chr3_4:79180800-79180819 | Msa0525670:CDS | 30.0% |
| TTTCTTGCATGATGAACAAA+TGG | - | chr3_4:79180827-79180846 | None:intergenic | 30.0% | |
| GTTCATCATGCAAGAAAATA+TGG | + | chr3_4:79180830-79180849 | Msa0525670:CDS | 30.0% | |
| AAACAATGTGAACAAACCTT+TGG | + | chr3_4:79179494-79179513 | Msa0525670:CDS | 30.0% | |
| ! | TCTTCTTTTGAATCAACCAA+AGG | - | chr3_4:79179513-79179532 | None:intergenic | 30.0% |
| ! | GGTTGATTCAAAAGAAGAAT+TGG | + | chr3_4:79179515-79179534 | Msa0525670:CDS | 30.0% |
| !! | CATTGATTTGAACCATGATA+GGG | + | chr3_4:79179539-79179558 | Msa0525670:CDS | 30.0% |
| ! | AATCATCTAAAGCTGCAAAT+TGG | + | chr3_4:79180800-79180819 | Msa0525670:CDS | 30.0% |
| TTTCTTGCATGATGAACAAA+TGG | - | chr3_4:79180827-79180846 | None:intergenic | 30.0% | |
| GTTCATCATGCAAGAAAATA+TGG | + | chr3_4:79180830-79180849 | Msa0525670:CDS | 30.0% | |
| TGATGATCAAGATCATCACA+TGG | + | chr3_4:79179422-79179441 | Msa0525670:CDS | 35.0% | |
| CCTATCATGGTTCAAATCAA+TGG | - | chr3_4:79179541-79179560 | None:intergenic | 35.0% | |
| !! | CCATTGATTTGAACCATGAT+AGG | + | chr3_4:79179538-79179557 | Msa0525670:CDS | 35.0% |
| TCAATTCATTTGCCCTATCA+TGG | - | chr3_4:79179554-79179573 | None:intergenic | 35.0% | |
| ! | TTTGTTTCGGTTTTACATGC+AGG | + | chr3_4:79179922-79179941 | Msa0525670:intron | 35.0% |
| TTTACATGCAGGCTCAAAAA+CGG | + | chr3_4:79179933-79179952 | Msa0525670:intron | 35.0% | |
| AGAGCAAGGTATGAATCATT+TGG | + | chr3_4:79180016-79180035 | Msa0525670:intron | 35.0% | |
| ! | ACTTTTCACTTCTGATCAGT+TGG | + | chr3_4:79180133-79180152 | Msa0525670:intron | 35.0% |
| TGATCAGTTGGATTTCTTCT+TGG | + | chr3_4:79180145-79180164 | Msa0525670:intron | 35.0% | |
| TAGTAGTCAGGGTAAAATGA+TGG | - | chr3_4:79180203-79180222 | None:intergenic | 35.0% | |
| AATTTCTGACGTAGTAGTCA+GGG | - | chr3_4:79180214-79180233 | None:intergenic | 35.0% | |
| GACTGTTGAACACTACAATT+TGG | + | chr3_4:79180566-79180585 | Msa0525670:intron | 35.0% | |
| AGGTGAACTGTATATACTTG+AGG | + | chr3_4:79180683-79180702 | Msa0525670:CDS | 35.0% | |
| ATGTCATGAGAAACTAAGTG+AGG | + | chr3_4:79180708-79180727 | Msa0525670:CDS | 35.0% | |
| AACTAAGTGAGGAGAATCTT+AGG | + | chr3_4:79180719-79180738 | Msa0525670:CDS | 35.0% | |
| ! | GATGATTGAGTTGTGTTTGA+TGG | - | chr3_4:79180787-79180806 | None:intergenic | 35.0% |
| ATAACAACATCCTCCTCATT+GGG | - | chr3_4:79180859-79180878 | None:intergenic | 35.0% | |
| AATAACAACATCCTCCTCAT+TGG | - | chr3_4:79180860-79180879 | None:intergenic | 35.0% | |
| TGATGATCAAGATCATCACA+TGG | + | chr3_4:79179422-79179441 | Msa0525670:CDS | 35.0% | |
| CCTATCATGGTTCAAATCAA+TGG | - | chr3_4:79179541-79179560 | None:intergenic | 35.0% | |
| !! | CCATTGATTTGAACCATGAT+AGG | + | chr3_4:79179538-79179557 | Msa0525670:CDS | 35.0% |
| TCAATTCATTTGCCCTATCA+TGG | - | chr3_4:79179554-79179573 | None:intergenic | 35.0% | |
| ! | TTTGTTTCGGTTTTACATGC+AGG | + | chr3_4:79179922-79179941 | Msa0525670:intron | 35.0% |
| TTTACATGCAGGCTCAAAAA+CGG | + | chr3_4:79179933-79179952 | Msa0525670:intron | 35.0% | |
| AGAGCAAGGTATGAATCATT+TGG | + | chr3_4:79180016-79180035 | Msa0525670:intron | 35.0% | |
| ! | ACTTTTCACTTCTGATCAGT+TGG | + | chr3_4:79180133-79180152 | Msa0525670:intron | 35.0% |
| TGATCAGTTGGATTTCTTCT+TGG | + | chr3_4:79180145-79180164 | Msa0525670:intron | 35.0% | |
| TAGTAGTCAGGGTAAAATGA+TGG | - | chr3_4:79180203-79180222 | None:intergenic | 35.0% | |
| AATTTCTGACGTAGTAGTCA+GGG | - | chr3_4:79180214-79180233 | None:intergenic | 35.0% | |
| GACTGTTGAACACTACAATT+TGG | + | chr3_4:79180566-79180585 | Msa0525670:intron | 35.0% | |
| AGGTGAACTGTATATACTTG+AGG | + | chr3_4:79180683-79180702 | Msa0525670:CDS | 35.0% | |
| ATGTCATGAGAAACTAAGTG+AGG | + | chr3_4:79180708-79180727 | Msa0525670:CDS | 35.0% | |
| AACTAAGTGAGGAGAATCTT+AGG | + | chr3_4:79180719-79180738 | Msa0525670:CDS | 35.0% | |
| ! | GATGATTGAGTTGTGTTTGA+TGG | - | chr3_4:79180787-79180806 | None:intergenic | 35.0% |
| ATAACAACATCCTCCTCATT+GGG | - | chr3_4:79180859-79180878 | None:intergenic | 35.0% | |
| AATAACAACATCCTCCTCAT+TGG | - | chr3_4:79180860-79180879 | None:intergenic | 35.0% | |
| !!! | CTTGAAGGCATTTTCAAGCT+TGG | - | chr3_4:79179694-79179713 | None:intergenic | 40.0% |
| TTACATGCAGGCTCAAAAAC+GGG | + | chr3_4:79179934-79179953 | Msa0525670:intron | 40.0% | |
| ! | AGCAAAGACAGGTTGAAGTT+TGG | + | chr3_4:79179981-79180000 | Msa0525670:CDS | 40.0% |
| GAATTTCTGACGTAGTAGTC+AGG | - | chr3_4:79180215-79180234 | None:intergenic | 40.0% | |
| GACTAAGCTGAAACAAACAG+AGG | + | chr3_4:79180663-79180682 | Msa0525670:CDS | 40.0% | |
| !! | GGAGAATCTTAGGTTGAAGA+AGG | + | chr3_4:79180729-79180748 | Msa0525670:CDS | 40.0% |
| GAACTGCGTGCATTAAAAGT+TGG | + | chr3_4:79180760-79180779 | Msa0525670:CDS | 40.0% | |
| GAAAATATGGAAGCCCAATG+AGG | + | chr3_4:79180843-79180862 | Msa0525670:CDS | 40.0% | |
| ! | AATCTAACTCTATGGTGCTG+TGG | - | chr3_4:79180891-79180910 | None:intergenic | 40.0% |
| !!! | CTTGAAGGCATTTTCAAGCT+TGG | - | chr3_4:79179694-79179713 | None:intergenic | 40.0% |
| TTACATGCAGGCTCAAAAAC+GGG | + | chr3_4:79179934-79179953 | Msa0525670:intron | 40.0% | |
| ! | AGCAAAGACAGGTTGAAGTT+TGG | + | chr3_4:79179981-79180000 | Msa0525670:CDS | 40.0% |
| GAATTTCTGACGTAGTAGTC+AGG | - | chr3_4:79180215-79180234 | None:intergenic | 40.0% | |
| GACTAAGCTGAAACAAACAG+AGG | + | chr3_4:79180663-79180682 | Msa0525670:CDS | 40.0% | |
| !! | GGAGAATCTTAGGTTGAAGA+AGG | + | chr3_4:79180729-79180748 | Msa0525670:CDS | 40.0% |
| GAACTGCGTGCATTAAAAGT+TGG | + | chr3_4:79180760-79180779 | Msa0525670:CDS | 40.0% | |
| GAAAATATGGAAGCCCAATG+AGG | + | chr3_4:79180843-79180862 | Msa0525670:CDS | 40.0% | |
| ! | AATCTAACTCTATGGTGCTG+TGG | - | chr3_4:79180891-79180910 | None:intergenic | 40.0% |
| GACACCACCAATGACAACAA+CGG | + | chr3_4:79179630-79179649 | Msa0525670:CDS | 45.0% | |
| ACACCACCAATGACAACAAC+GGG | + | chr3_4:79179631-79179650 | Msa0525670:CDS | 45.0% | |
| ACGGGTGCTCAAAGAAATTG+AGG | + | chr3_4:79179649-79179668 | Msa0525670:CDS | 45.0% | |
| AATTGTGCTGTGACGCTTGA+AGG | - | chr3_4:79179709-79179728 | None:intergenic | 45.0% | |
| CATACCTTGCTCTTCTGTTC+TGG | - | chr3_4:79180009-79180028 | None:intergenic | 45.0% | |
| AATATGGAAGCCCAATGAGG+AGG | + | chr3_4:79180846-79180865 | Msa0525670:CDS | 45.0% | |
| GACACCACCAATGACAACAA+CGG | + | chr3_4:79179630-79179649 | Msa0525670:CDS | 45.0% | |
| ACACCACCAATGACAACAAC+GGG | + | chr3_4:79179631-79179650 | Msa0525670:CDS | 45.0% | |
| ACGGGTGCTCAAAGAAATTG+AGG | + | chr3_4:79179649-79179668 | Msa0525670:CDS | 45.0% | |
| AATTGTGCTGTGACGCTTGA+AGG | - | chr3_4:79179709-79179728 | None:intergenic | 45.0% | |
| CATACCTTGCTCTTCTGTTC+TGG | - | chr3_4:79180009-79180028 | None:intergenic | 45.0% | |
| AATATGGAAGCCCAATGAGG+AGG | + | chr3_4:79180846-79180865 | Msa0525670:CDS | 45.0% | |
| TCATCACATGGCATGCACGT+TGG | + | chr3_4:79179434-79179453 | Msa0525670:CDS | 50.0% | |
| TGAGCACCCGTTGTTGTCAT+TGG | - | chr3_4:79179640-79179659 | None:intergenic | 50.0% | |
| ! | TCAAAAACGGGCACTTGCTG+AGG | + | chr3_4:79179946-79179965 | Msa0525670:CDS | 50.0% |
| GGTTCCAGAACAGAAGAGCA+AGG | + | chr3_4:79180002-79180021 | Msa0525670:CDS | 50.0% | |
| TCATCACATGGCATGCACGT+TGG | + | chr3_4:79179434-79179453 | Msa0525670:CDS | 50.0% | |
| TGAGCACCCGTTGTTGTCAT+TGG | - | chr3_4:79179640-79179659 | None:intergenic | 50.0% | |
| ! | TCAAAAACGGGCACTTGCTG+AGG | + | chr3_4:79179946-79179965 | Msa0525670:CDS | 50.0% |
| GGTTCCAGAACAGAAGAGCA+AGG | + | chr3_4:79180002-79180021 | Msa0525670:CDS | 50.0% | |
| GCACCCGTTGTTGTCATTGG+TGG | - | chr3_4:79179637-79179656 | None:intergenic | 55.0% | |
| GCACCCGTTGTTGTCATTGG+TGG | - | chr3_4:79179637-79179656 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 79179417 | 79180912 | 79179417 | ID=Msa0525670;Name=Msa0525670 |
| chr3_4 | mRNA | 79179417 | 79180912 | 79179417 | ID=Msa0525670-mRNA-1;Parent=Msa0525670;Name=Msa0525670-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|215 |
| chr3_4 | exon | 79179417 | 79179734 | 79179417 | ID=Msa0525670-mRNA-1:exon:23666;Parent=Msa0525670-mRNA-1 |
| chr3_4 | exon | 79179944 | 79180023 | 79179944 | ID=Msa0525670-mRNA-1:exon:23667;Parent=Msa0525670-mRNA-1 |
| chr3_4 | exon | 79180663 | 79180912 | 79180663 | ID=Msa0525670-mRNA-1:exon:23668;Parent=Msa0525670-mRNA-1 |
| chr3_4 | CDS | 79179417 | 79179734 | 79179417 | ID=Msa0525670-mRNA-1:cds;Parent=Msa0525670-mRNA-1 |
| chr3_4 | CDS | 79179944 | 79180023 | 79179944 | ID=Msa0525670-mRNA-1:cds;Parent=Msa0525670-mRNA-1 |
| chr3_4 | CDS | 79180663 | 79180912 | 79180663 | ID=Msa0525670-mRNA-1:cds;Parent=Msa0525670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
