AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0528890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0528890 MtrunA17_Chr3g0087891 88.552 297 2 4 6 272 51 345 0.0 519
Msa0528890 MtrunA17_Chr3g0087881 52.151 186 60 5 90 249 125 307 4.39e-55 185
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0528890 AT3G08505.1 67.143 210 46 2 86 272 102 311 6.43e-101 299
Msa0528890 AT3G08505.2 67.143 210 46 2 86 272 102 311 6.43e-101 299
Msa0528890 AT3G08505.3 67.143 210 46 2 86 272 102 311 6.43e-101 299

Find 84 sgRNAs with CRISPR-Local

Find 664 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTATATGAATTTAAAATA+TGG 0.189355 4_1:+1880033 Msa0528890:three_prime_UTR
CCTGATGTCTTTGGCAATTA+TGG 0.200868 4_1:-1875517 None:intergenic
TTACTTGAGCTTTGCCTTGT+AGG 0.248432 4_1:-1874172 None:intergenic
GACAATGCTTGCATCCTTTC+CGG 0.265577 4_1:+1873815 Msa0528890:CDS
GCGTATCGTGTATTAGAAAT+TGG 0.271742 4_1:+1874010 Msa0528890:CDS
GGAATTTGTCAGGAGACTTT+TGG 0.272520 4_1:+1879997 Msa0528890:three_prime_UTR
AACTACAGTGTACACCATTT+TGG 0.303484 4_1:+1879760 Msa0528890:three_prime_UTR
AGGTAGCTTTGCGTCATCTT+GGG 0.329256 4_1:+1875478 Msa0528890:CDS
TTGTCGTTCCAAGTGTTATT+TGG 0.331364 4_1:+1874112 Msa0528890:CDS
CGTAGTAGTAACCCAACATT+AGG 0.336048 4_1:+1874033 Msa0528890:CDS
TTGTGCAGATTCTTGATTCC+AGG 0.338822 4_1:-1873644 None:intergenic
GAGGTAGCTTTGCGTCATCT+TGG 0.340448 4_1:+1875477 Msa0528890:CDS
TTTATATGAATTTAAAATAT+GGG 0.355203 4_1:+1880034 Msa0528890:three_prime_UTR
GATCATGTTCCCAAGATTCT+TGG 0.355575 4_1:-1879944 None:intergenic
TAAAAGTGCAAATTGTAAAA+TGG 0.356358 4_1:+1879639 Msa0528890:CDS
AATATGTGTAAAAGTTAATT+AGG 0.361095 4_1:+1879839 Msa0528890:three_prime_UTR
ATTTGTTCATTTGCTGCTGC+TGG 0.363377 4_1:+1873730 Msa0528890:CDS
ATTTAAGCATCTTAATGAAA+TGG 0.363388 4_1:+1880057 Msa0528890:three_prime_UTR
CTCTCCCCATATGACCAAAA+TGG 0.365915 4_1:-1879774 None:intergenic
TGACATTGCACCAAGAATCT+TGG 0.377266 4_1:+1879934 Msa0528890:three_prime_UTR
ATATGTTCTTCTCTTTCTTC+AGG 0.386226 4_1:-1873838 None:intergenic
TTGATTCCAGGCTTGTTCAC+TGG 0.388041 4_1:-1873632 None:intergenic
GCAAATTGTAAAATGGTAGA+TGG 0.396681 4_1:+1879646 Msa0528890:CDS
TTTGAAGCATACAAAATGAA+TGG 0.408761 4_1:+1879718 Msa0528890:three_prime_UTR
GGATGTTAATAGCACATTGC+GGG 0.414993 4_1:+1874059 Msa0528890:CDS
AGAGAGAAACCTGATGTCTT+TGG 0.415002 4_1:-1875526 None:intergenic
TGATTCCAGGCTTGTTCACT+GGG 0.416070 4_1:-1873631 None:intergenic
TTCTTCCCAGTGAACAAGCC+TGG 0.423135 4_1:+1873626 Msa0528890:CDS
GTTTCAGAATCGGCTGTACT+TGG 0.435930 4_1:+1873529 Msa0528890:CDS
ACGGCAGCTGAGCGTAAGTT+TGG 0.437819 4_1:+1873958 Msa0528890:CDS
ATTATTTACAGGAATTTGTC+AGG 0.438068 4_1:+1879987 Msa0528890:three_prime_UTR
CTGCACAACTTGACTTCCTA+AGG 0.447330 4_1:+1873659 Msa0528890:CDS
TGAAACAAGGGGCTGGTGTT+CGG 0.458109 4_1:-1873512 None:intergenic
GACATTGCACCAAGAATCTT+GGG 0.462286 4_1:+1879935 Msa0528890:three_prime_UTR
TAACATCCATCCCTAATGTT+GGG 0.466091 4_1:-1874044 None:intergenic
CCAGCCCCTTGTTTCAGAAT+CGG 0.469602 4_1:+1873519 Msa0528890:CDS
CGTCATCTTGGGGCTGCAGA+TGG 0.471622 4_1:+1875489 Msa0528890:CDS
TGTTCGGTTATTGAAGAAGA+TGG 0.473750 4_1:-1873496 None:intergenic
GGAAGATGATGTTGTTCAAT+CGG 0.474976 4_1:+1873681 Msa0528890:CDS
CCATAATTGCCAAAGACATC+AGG 0.475198 4_1:+1875517 Msa0528890:CDS
AAAATGAATGGATTGATGAT+TGG 0.482043 4_1:+1879730 Msa0528890:three_prime_UTR
GAACAACATCATCTTCCCTT+AGG 0.486955 4_1:-1873675 None:intergenic
TTAACATCCATCCCTAATGT+TGG 0.488690 4_1:-1874045 None:intergenic
TAAGATAGCTTGCGACAGAT+AGG 0.489220 4_1:-1874087 None:intergenic
CGGTACTAGCTGCTTCTACA+AGG 0.489509 4_1:+1874836 Msa0528890:intron
GCAGCAGCAAATGAACAAAT+CGG 0.492646 4_1:-1873727 None:intergenic
TCTCTTTCTTCAGGCCGGAA+AGG 0.522386 4_1:-1873829 None:intergenic
CAACACCATTCGATGTAACT+CGG 0.526387 4_1:-1873564 None:intergenic
GTTCTTCTCTTTCTTCAGGC+CGG 0.528004 4_1:-1873834 None:intergenic
TACAGCCGATTCTGAAACAA+GGG 0.542302 4_1:-1873524 None:intergenic
GTAGTAGTAACCCAACATTA+GGG 0.548465 4_1:+1874034 Msa0528890:CDS
GGTAGCTTTGCGTCATCTTG+GGG 0.557694 4_1:+1875479 Msa0528890:CDS
AAAAGTTAATTAGGTCAATG+AGG 0.559312 4_1:+1879848 Msa0528890:three_prime_UTR
TGTTCACTGGGAAGAACAAA+GGG 0.561359 4_1:-1873619 None:intergenic
CCGATTCTGAAACAAGGGGC+TGG 0.563910 4_1:-1873519 None:intergenic
ATATCGTGATGGCCGTCTTG+AGG 0.591471 4_1:+1875455 Msa0528890:CDS
CAAGCATTGTCTTCCACATG+AGG 0.592492 4_1:-1873803 None:intergenic
TTGTTCACTGGGAAGAACAA+AGG 0.593124 4_1:-1873620 None:intergenic
TAGTAACCCAACATTAGGGA+TGG 0.597655 4_1:+1874038 Msa0528890:CDS
AATACCCGAGTTACATCGAA+TGG 0.601234 4_1:+1873559 Msa0528890:CDS
TATTGAAGAAGATGGAGTAG+AGG 0.608961 4_1:-1873488 None:intergenic
GTAGCATACCAAATAACACT+TGG 0.613633 4_1:-1874120 None:intergenic
AAGCATTGTCTTCCACATGA+GGG 0.614385 4_1:-1873802 None:intergenic
TCGTGATGGCCGTCTTGAGG+AGG 0.617371 4_1:+1875458 Msa0528890:CDS
CATAAATCTCCGTGTACATG+AGG 0.617746 4_1:-1873778 None:intergenic
AACACCATTCGATGTAACTC+GGG 0.620122 4_1:-1873563 None:intergenic
AGCATTGTCTTCCACATGAG+GGG 0.631001 4_1:-1873801 None:intergenic
GGAAATCATTGATACCTACA+AGG 0.631452 4_1:+1874158 Msa0528890:CDS
AACTTACGCTCAGCTGCCGT+AGG 0.632534 4_1:-1873955 None:intergenic
TGCACAACTTGACTTCCTAA+GGG 0.633433 4_1:+1873660 Msa0528890:CDS
GCTTTGAAAGAACACGCTCA+AGG 0.633767 4_1:-1873933 None:intergenic
GGAGATTTATGCCCCTCATG+TGG 0.636320 4_1:+1873790 Msa0528890:CDS
TGAGGACATTGTTCCCCTCG+TGG 0.637218 4_1:-1873760 None:intergenic
GTACAGCCGATTCTGAAACA+AGG 0.638170 4_1:-1873525 None:intergenic
CTGCTGGAAACTGTCCACGA+GGG 0.638932 4_1:+1873746 Msa0528890:CDS
TGCTGGAAACTGTCCACGAG+GGG 0.639094 4_1:+1873747 Msa0528890:CDS
CTAATACACGATACGCAGAA+CGG 0.640856 4_1:-1874003 None:intergenic
GAACAATGTCCTCATGTACA+CGG 0.651566 4_1:+1873769 Msa0528890:CDS
TTGCAGCATGCATATCGTGA+TGG 0.670081 4_1:+1875444 Msa0528890:intron
AAATAAGCAAAAGCATCTCG+AGG 0.674626 4_1:+1873873 Msa0528890:CDS
GCTGCTGGAAACTGTCCACG+AGG 0.694625 4_1:+1873745 Msa0528890:CDS
TGGATGTTAATAGCACATTG+CGG 0.695653 4_1:+1874058 Msa0528890:CDS
ACAGCCGATTCTGAAACAAG+GGG 0.720447 4_1:-1873523 None:intergenic
GCAAAGCTACCTCCTCAAGA+CGG 0.724386 4_1:-1875467 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAATATTTTTTTTCAAAA+AGG + chr4_1:1870062-1870081 Msa0528890:intron 10.0%
!!! TTTTAATAATTGAATTGAAT+CGG - chr4_1:1870374-1870393 None:intergenic 10.0%
!! TGAAAAAAAAAAATCATAAA+TGG + chr4_1:1870829-1870848 Msa0528890:intron 10.0%
!! AAAAGAAAAATATTATTATG+AGG - chr4_1:1871973-1871992 None:intergenic 10.0%
!! CTATAATAAAAATAAAATTG+AGG - chr4_1:1872082-1872101 None:intergenic 10.0%
!!! TTCTTGATTATTTTTTTATA+TGG + chr4_1:1872272-1872291 Msa0528890:intron 10.0%
!!! TCTTGATTATTTTTTTATAT+GGG + chr4_1:1872273-1872292 Msa0528890:intron 10.0%
!!! TAAAAAAGTATTTATTTTGT+TGG - chr4_1:1877654-1877673 None:intergenic 10.0%
!!! GTTTATATGAATTTAAAATA+TGG + chr4_1:1880033-1880052 Msa0528890:three_prime_UTR 10.0%
!! GAAAAAAAATATTTCAATCA+TGG - chr4_1:1870058-1870077 None:intergenic 15.0%
!! TAGAAATATTCATAATCTTA+TGG + chr4_1:1870298-1870317 Msa0528890:intron 15.0%
!! AAAAAAAAGAAATAAAGTCT+AGG + chr4_1:1870428-1870447 Msa0528890:intron 15.0%
!!! ATTTATTTTTATAAATGGAG+AGG - chr4_1:1870676-1870695 None:intergenic 15.0%
!! AAGTAAAAAGTAATTAATGA+TGG - chr4_1:1870768-1870787 None:intergenic 15.0%
!!! TTTTTTTTAAGTAAAAGGAA+TGG - chr4_1:1871440-1871459 None:intergenic 15.0%
!!! TCACTTTTTTTTTAAGTAAA+AGG - chr4_1:1871445-1871464 None:intergenic 15.0%
!!! TTTTTTTTAAGTAAAAGGAA+TGG - chr4_1:1871440-1871459 None:intergenic 15.0%
!!! TTCACTTTTTTTTAAGTAAA+AGG - chr4_1:1871498-1871517 None:intergenic 15.0%
!!! CGATTTTTTCAAATTATTAA+CGG + chr4_1:1871690-1871709 Msa0528890:intron 15.0%
!! TAATAATAATATTAACCAAG+AGG - chr4_1:1872172-1872191 None:intergenic 15.0%
!!! CTTGATTATTTTTTTATATG+GGG + chr4_1:1872274-1872293 Msa0528890:intron 15.0%
!!! TAGATTTTTTTTTGGATTAT+TGG + chr4_1:1872433-1872452 Msa0528890:intron 15.0%
!!! TTTTATTTTTTTTGCAAGTT+TGG + chr4_1:1872668-1872687 Msa0528890:intron 15.0%
!! TTTATGTAATTTATTGTCTT+TGG + chr4_1:1873182-1873201 Msa0528890:intron 15.0%
!!! AATAAACTAAAAACAACTTT+TGG + chr4_1:1874609-1874628 Msa0528890:intron 15.0%
!!! TGCAAATTTTAAATATACTT+GGG - chr4_1:1875296-1875315 None:intergenic 15.0%
!!! TTGCAAATTTTAAATATACT+TGG - chr4_1:1875297-1875316 None:intergenic 15.0%
!! AAGTATAACATAAACTAATT+AGG - chr4_1:1875422-1875441 None:intergenic 15.0%
!!! TTTTTTTTTTTTTCTTTGAG+CGG - chr4_1:1875987-1876006 None:intergenic 15.0%
!! AAAGTTAAACTTAAATTGAT+AGG - chr4_1:1876567-1876586 None:intergenic 15.0%
!! TCAAAAAATAAAAGACTATT+TGG - chr4_1:1877724-1877743 None:intergenic 15.0%
!! AAATTAAAAAAAGACAACTA+TGG - chr4_1:1877821-1877840 None:intergenic 15.0%
!! AATATCAAAATATTAATGTC+TGG - chr4_1:1878649-1878668 None:intergenic 15.0%
!! AATAAATGAATAACTGTAAT+CGG - chr4_1:1878836-1878855 None:intergenic 15.0%
!! AGTAATTAAGAAAATTGAAA+AGG + chr4_1:1879428-1879447 Msa0528890:intron 15.0%
!! AATATGTGTAAAAGTTAATT+AGG + chr4_1:1879839-1879858 Msa0528890:three_prime_UTR 15.0%
!!! TGAATTTTGTTATTATTTAC+AGG + chr4_1:1879976-1879995 Msa0528890:three_prime_UTR 15.0%
!! ATGTTATCTTCAATTTGATA+GGG - chr4_1:1870095-1870114 None:intergenic 20.0%
!!! TTAACCATTTGTTTTCAATT+TGG - chr4_1:1870209-1870228 None:intergenic 20.0%
!! TTAATAAGTGACTAAATACA+AGG + chr4_1:1870247-1870266 Msa0528890:intron 20.0%
!!! ATTTTTACATCAACTCAATT+CGG - chr4_1:1870556-1870575 None:intergenic 20.0%
!!! TTGAGTTGATGTAAAAATTA+TGG + chr4_1:1870558-1870577 Msa0528890:intron 20.0%
!! AAAAAAATCATAAATGGAGA+AGG + chr4_1:1870835-1870854 Msa0528890:intron 20.0%
!! TAAATATCATACCTAAACTA+GGG - chr4_1:1871022-1871041 None:intergenic 20.0%
!!! TCGTTGTTTTAAGTATTAAA+AGG + chr4_1:1871330-1871349 Msa0528890:intron 20.0%
!! TGGAAAATTACAATAATTGT+CGG - chr4_1:1871404-1871423 None:intergenic 20.0%
!! TAAGTAAGAAATTTGCAAAT+CGG - chr4_1:1871565-1871584 None:intergenic 20.0%
!! TTTAGTAAACCTAAAAATGA+AGG + chr4_1:1871766-1871785 Msa0528890:intron 20.0%
!! TTAGTAAACCTAAAAATGAA+GGG + chr4_1:1871767-1871786 Msa0528890:intron 20.0%
!! AAAAGCAAAAGAAAAAGAAA+TGG - chr4_1:1872021-1872040 None:intergenic 20.0%
!! ATTGATTGAGAAAACAAAAA+AGG - chr4_1:1872105-1872124 None:intergenic 20.0%
!!! TTTTTTTTTCTTCAATCATG+TGG + chr4_1:1872354-1872373 Msa0528890:intron 20.0%
!! TTGATTATAACTCAGAAATT+AGG + chr4_1:1872393-1872412 Msa0528890:intron 20.0%
!!! ATGCAAAGTAGATTTTTTTT+TGG + chr4_1:1872425-1872444 Msa0528890:intron 20.0%
!! AAGTTTGGTAAATAGTTATT+TGG + chr4_1:1872683-1872702 Msa0528890:intron 20.0%
!!! TTATAGCTTTTGAATTTTCA+CGG + chr4_1:1872856-1872875 Msa0528890:intron 20.0%
!!! AAAAGTCTCTAGAATAAAAA+GGG - chr4_1:1872994-1873013 None:intergenic 20.0%
!!! AAAAAGTCTCTAGAATAAAA+AGG - chr4_1:1872995-1873014 None:intergenic 20.0%
!!! TTTATTCTAGAGACTTTTTA+AGG + chr4_1:1872996-1873015 Msa0528890:intron 20.0%
!! ATATTAGATCATGAATCAAT+TGG - chr4_1:1874248-1874267 None:intergenic 20.0%
!!! ACTATTATGTTGCTTATATT+AGG - chr4_1:1874416-1874435 None:intergenic 20.0%
!!! TTAAGTTGTTTATCCAAATA+GGG - chr4_1:1874450-1874469 None:intergenic 20.0%
!!! ATTAAGTTGTTTATCCAAAT+AGG - chr4_1:1874451-1874470 None:intergenic 20.0%
!! TTATATCTGAGTTTATATAC+TGG - chr4_1:1874690-1874709 None:intergenic 20.0%
!!! TTTTGCTGAAATGTTTATTT+TGG + chr4_1:1874742-1874761 Msa0528890:intron 20.0%
!! TTTGGAAAGAAAAGTAAAAT+GGG - chr4_1:1874912-1874931 None:intergenic 20.0%
!!! TTTTGGAAAGAAAAGTAAAA+TGG - chr4_1:1874913-1874932 None:intergenic 20.0%
!!! CTATACGATAATTAAAGTTT+TGG - chr4_1:1874930-1874949 None:intergenic 20.0%
!!! AAACAATTGAAATTTGTTCA+CGG - chr4_1:1875032-1875051 None:intergenic 20.0%
!!! TTCAAATTGTTTTCAAATAG+AGG + chr4_1:1875180-1875199 Msa0528890:intron 20.0%
!!! TTCATGATTTCTTTTGTATA+TGG + chr4_1:1875710-1875729 Msa0528890:intron 20.0%
!! CAATATAATTGAGTGAAATA+GGG - chr4_1:1876103-1876122 None:intergenic 20.0%
!! TCAATATAATTGAGTGAAAT+AGG - chr4_1:1876104-1876123 None:intergenic 20.0%
!!! CAATGAAGTTGATTATTTTT+CGG + chr4_1:1876447-1876466 Msa0528890:intron 20.0%
!!! GTTTAACTTTCTTGATTTTT+TGG + chr4_1:1876577-1876596 Msa0528890:intron 20.0%
!!! ACAGTCAACTAATATTTTTT+TGG - chr4_1:1876748-1876767 None:intergenic 20.0%
!! TTAGACATTATGGAATAAAT+GGG + chr4_1:1876966-1876985 Msa0528890:intron 20.0%
!! AAAAATAAAAGACTATTTGG+AGG - chr4_1:1877721-1877740 None:intergenic 20.0%
!! ATGATTTCTCAAAATGTAAT+TGG - chr4_1:1878312-1878331 None:intergenic 20.0%
!! ATAAATGAATAACTGTAATC+GGG - chr4_1:1878835-1878854 None:intergenic 20.0%
!! AATACACCAATACATATTAA+GGG - chr4_1:1879326-1879345 None:intergenic 20.0%
!! AAATACACCAATACATATTA+AGG - chr4_1:1879327-1879346 None:intergenic 20.0%
!!! TTTTGTTTAATCAGTTTCAA+AGG + chr4_1:1879577-1879596 Msa0528890:intron 20.0%
!!! TAAAAGTGCAAATTGTAAAA+TGG + chr4_1:1879639-1879658 Msa0528890:CDS 20.0%
!!! ATATATATGCTTTTGTACAA+TGG + chr4_1:1879671-1879690 Msa0528890:CDS 20.0%
!!! ATTTTGTATGCTTCAAAAAT+TGG - chr4_1:1879715-1879734 None:intergenic 20.0%
!!! ACATTTACTTTTATGTATTG+TGG + chr4_1:1879808-1879827 Msa0528890:three_prime_UTR 20.0%
!!! GTAAACTTAATTTTTATGCT+TGG + chr4_1:1879911-1879930 Msa0528890:three_prime_UTR 20.0%
!! ATTTAAGCATCTTAATGAAA+TGG + chr4_1:1880057-1880076 Msa0528890:three_prime_UTR 20.0%
! CATGTTATCTTCAATTTGAT+AGG - chr4_1:1870096-1870115 None:intergenic 25.0%
! TTAGTAAGTGGTTAACTATA+AGG + chr4_1:1870182-1870201 Msa0528890:intron 25.0%
! TAGTAAGTGGTTAACTATAA+GGG + chr4_1:1870183-1870202 Msa0528890:intron 25.0%
! AAACAAATGGTTAAAGCATA+AGG + chr4_1:1870215-1870234 Msa0528890:intron 25.0%
! TGATATGAATTTGTAGGTTA+TGG - chr4_1:1870533-1870552 None:intergenic 25.0%
! ATCTACTTGTTCATTTGTTT+GGG - chr4_1:1870596-1870615 None:intergenic 25.0%
! AATCTACTTGTTCATTTGTT+TGG - chr4_1:1870597-1870616 None:intergenic 25.0%
! GTAAATATCATACCTAAACT+AGG - chr4_1:1871023-1871042 None:intergenic 25.0%
! AGTTTAGGTATGATATTTAC+AGG + chr4_1:1871023-1871042 Msa0528890:intron 25.0%
! GTTTAGGTATGATATTTACA+GGG + chr4_1:1871024-1871043 Msa0528890:intron 25.0%
! TTTAGGTATGATATTTACAG+GGG + chr4_1:1871025-1871044 Msa0528890:intron 25.0%
! GAAATTCCAATAAACTACTT+AGG + chr4_1:1871352-1871371 Msa0528890:intron 25.0%
! AAGTTTCCTAAGTAGTTTAT+TGG - chr4_1:1871361-1871380 None:intergenic 25.0%
! GGAAAATTACAATAATTGTC+GGG - chr4_1:1871403-1871422 None:intergenic 25.0%
!!! GGAATGGTTTTAGTTATTTA+TGG - chr4_1:1871424-1871443 None:intergenic 25.0%
!!! GGAATGGTTTTAGTTATTTA+TGG - chr4_1:1871424-1871443 None:intergenic 25.0%
!!! TTTTGACGAAACTTGTTATT+CGG - chr4_1:1871532-1871551 None:intergenic 25.0%
! AATAACAAGTTTCGTCAAAA+TGG + chr4_1:1871532-1871551 Msa0528890:intron 25.0%
! AAGTAAGAAATTTGCAAATC+GGG - chr4_1:1871564-1871583 None:intergenic 25.0%
! TTTCAAATTATTAACGGTGT+CGG + chr4_1:1871696-1871715 Msa0528890:intron 25.0%
! AAGAAAGAAAGATTGGAAAT+TGG - chr4_1:1871949-1871968 None:intergenic 25.0%
!!! AAAAAAAACCTCACGTTTTT+TGG + chr4_1:1872053-1872072 Msa0528890:intron 25.0%
!!! ATTGGATAAGTTTTTGAAGT+TGG + chr4_1:1872451-1872470 Msa0528890:intron 25.0%
!! TTTGAAGTTGGAATTCTATT+AGG + chr4_1:1872463-1872482 Msa0528890:intron 25.0%
! AATTTGATATTTCTCCTATC+TGG + chr4_1:1872576-1872595 Msa0528890:intron 25.0%
! ATTTGATATTTCTCCTATCT+GGG + chr4_1:1872577-1872596 Msa0528890:intron 25.0%
! AGGAATTGAAAGTTGAAAAT+TGG + chr4_1:1872633-1872652 Msa0528890:intron 25.0%
! ATGATATAGCTTATTGAAGT+AGG + chr4_1:1872709-1872728 Msa0528890:intron 25.0%
! TATGCATATGTTTATTTGAG+CGG + chr4_1:1872783-1872802 Msa0528890:intron 25.0%
! AATTCAAAAGCTATAAAGAG+TGG - chr4_1:1872852-1872871 None:intergenic 25.0%
!!! AAAGTCTCTAGAATAAAAAG+GGG - chr4_1:1872993-1873012 None:intergenic 25.0%
! GCATGATTAAAATGAATTCA+TGG - chr4_1:1873059-1873078 None:intergenic 25.0%
! ATAACTCGATAACCATAAAT+CGG - chr4_1:1873342-1873361 None:intergenic 25.0%
!! ATATGCACATTTTATCAGAA+AGG + chr4_1:1873406-1873425 Msa0528890:intron 25.0%
!! ACATAAAACTATCTAAGGTT+TGG - chr4_1:1874274-1874293 None:intergenic 25.0%
! ATGCTGAATAAGTTGTTATA+AGG + chr4_1:1874309-1874328 Msa0528890:intron 25.0%
! TGCTGAATAAGTTGTTATAA+GGG + chr4_1:1874310-1874329 Msa0528890:intron 25.0%
!! AGTGTTTTCATAAGTTATCT+TGG + chr4_1:1874574-1874593 Msa0528890:intron 25.0%
! ATTTGTTCAATACCATTTGT+AGG + chr4_1:1874766-1874785 Msa0528890:intron 25.0%
!! AATGTCATAAAGCATCAATT+GGG - chr4_1:1874963-1874982 None:intergenic 25.0%
!! TAATGTCATAAAGCATCAAT+TGG - chr4_1:1874964-1874983 None:intergenic 25.0%
! AAACATCATAATTGAACGTT+AGG - chr4_1:1875342-1875361 None:intergenic 25.0%
! ATGTATTAAGTTAGCGAAAT+TGG - chr4_1:1875584-1875603 None:intergenic 25.0%
! AAGACATACATCATTTCTAA+CGG - chr4_1:1875792-1875811 None:intergenic 25.0%
! TTAAGCAACTTCAATTCTTA+TGG - chr4_1:1876018-1876037 None:intergenic 25.0%
! AGAATTGAAGTTGCTTAATT+TGG + chr4_1:1876020-1876039 Msa0528890:intron 25.0%
!! TTTCCCTAGTATATTGTTTT+AGG - chr4_1:1876225-1876244 None:intergenic 25.0%
! ACAATATACTAGGGAAATAA+AGG + chr4_1:1876228-1876247 Msa0528890:intron 25.0%
! ACTGTATTTATGTGCTATAT+TGG + chr4_1:1876629-1876648 Msa0528890:intron 25.0%
! ATTATCTATAAGAGAACAGA+TGG - chr4_1:1876834-1876853 None:intergenic 25.0%
! TATAGATAATCTTAGTGTCT+TGG + chr4_1:1876844-1876863 Msa0528890:intron 25.0%
! GTTAGACATTATGGAATAAA+TGG + chr4_1:1876965-1876984 Msa0528890:intron 25.0%
!! TCATTTTCAGCAATCTTTTA+TGG + chr4_1:1877263-1877282 Msa0528890:intron 25.0%
! AGTTTGGAAGTGAAATTATT+AGG - chr4_1:1877617-1877636 None:intergenic 25.0%
!!! ACAATTTTTTGATTCCCAAA+TGG + chr4_1:1877743-1877762 Msa0528890:intron 25.0%
! CAGAATACTTGCATAAAAAA+TGG + chr4_1:1877892-1877911 Msa0528890:intron 25.0%
! ACTTACCATAAAAATTGAAG+AGG - chr4_1:1877962-1877981 None:intergenic 25.0%
! ATATTCCAACAAAAAAGCTT+CGG - chr4_1:1878015-1878034 None:intergenic 25.0%
!!! TGTTGGAATATTAGTTTTGT+TGG + chr4_1:1878024-1878043 Msa0528890:intron 25.0%
! AAAACTAGTCGATTATGTTT+CGG + chr4_1:1878127-1878146 Msa0528890:intron 25.0%
! TTAAGATTGTTTGTACTTTG+AGG + chr4_1:1878377-1878396 Msa0528890:intron 25.0%
! CTTAAAGATATGCTATCATT+GGG - chr4_1:1879083-1879102 None:intergenic 25.0%
! CAATGATAGCATATCTTTAA+GGG + chr4_1:1879082-1879101 Msa0528890:intron 25.0%
! ATAGTACCCTTAATATGTAT+TGG + chr4_1:1879317-1879336 Msa0528890:intron 25.0%
! ATGCAAGCAATATTAATTAG+AGG + chr4_1:1879391-1879410 Msa0528890:intron 25.0%
!! TTTGCACTTTTATTACATGA+TGG - chr4_1:1879631-1879650 None:intergenic 25.0%
!! TTTGAAGCATACAAAATGAA+TGG + chr4_1:1879718-1879737 Msa0528890:three_prime_UTR 25.0%
!!! AAAATGAATGGATTGATGAT+TGG + chr4_1:1879730-1879749 Msa0528890:three_prime_UTR 25.0%
! AAAAGTTAATTAGGTCAATG+AGG + chr4_1:1879848-1879867 Msa0528890:three_prime_UTR 25.0%
! ATTATTTACAGGAATTTGTC+AGG + chr4_1:1879987-1880006 Msa0528890:three_prime_UTR 25.0%
TCTTCAATTTGATAGGGTTA+GGG - chr4_1:1870089-1870108 None:intergenic 30.0%
ATCTTCAATTTGATAGGGTT+AGG - chr4_1:1870090-1870109 None:intergenic 30.0%
AAGACTAGATTGTTAGTAAG+TGG + chr4_1:1870170-1870189 Msa0528890:intron 30.0%
TCTGTGAAACACTCTTAAAT+AGG - chr4_1:1870325-1870344 None:intergenic 30.0%
ATGAATTTGTAGGTTATGGA+TGG - chr4_1:1870529-1870548 None:intergenic 30.0%
! ATTCGGTGATATGAATTTGT+AGG - chr4_1:1870539-1870558 None:intergenic 30.0%
TGTGTCTTTATCTTTGCAAA+TGG + chr4_1:1870800-1870819 Msa0528890:intron 30.0%
TTAAACCTGAGAAAGAAGTT+AGG - chr4_1:1870862-1870881 None:intergenic 30.0%
TAAAGTTCACTGGATCAATA+AGG - chr4_1:1870894-1870913 None:intergenic 30.0%
!!! GTTCTCTTTTTAAAGTTCAC+TGG - chr4_1:1870904-1870923 None:intergenic 30.0%
AAAAAGAGAACTCCTTACAA+AGG + chr4_1:1870913-1870932 Msa0528890:intron 30.0%
AAAAGAGAACTCCTTACAAA+GGG + chr4_1:1870914-1870933 Msa0528890:intron 30.0%
TAAACTAGGACAATCTCTTA+AGG - chr4_1:1870998-1871017 None:intergenic 30.0%
ATGAGAACACTATTACACTA+AGG + chr4_1:1871100-1871119 Msa0528890:intron 30.0%
TGAGAACACTATTACACTAA+GGG + chr4_1:1871101-1871120 Msa0528890:intron 30.0%
!! TAGATTCATGGCTTTATACA+TGG - chr4_1:1871254-1871273 None:intergenic 30.0%
TTCAGTGTAGTTATATGTGT+CGG - chr4_1:1871665-1871684 None:intergenic 30.0%
ATGAGGAAAGAAAGAAAGAT+TGG - chr4_1:1871956-1871975 None:intergenic 30.0%
AAAGAAATGGTTGTGAAGAT+AGG - chr4_1:1872008-1872027 None:intergenic 30.0%
AAAGAAAAGAAAACCCAGAT+AGG - chr4_1:1872593-1872612 None:intergenic 30.0%
TTGATTAGAGCTCAGAAATT+AGG + chr4_1:1872613-1872632 Msa0528890:intron 30.0%
ATCGACATTAATCCTTATCA+CGG - chr4_1:1873022-1873041 None:intergenic 30.0%
! CATGGTTAGAAGGTTTTTAA+CGG + chr4_1:1873101-1873120 Msa0528890:intron 30.0%
!! TATTGTCTTTGGAATCTTTC+AGG + chr4_1:1873193-1873212 Msa0528890:intron 30.0%
!! ATTGTCTTTGGAATCTTTCA+GGG + chr4_1:1873194-1873213 Msa0528890:intron 30.0%
! ATTGTGAATTTTCTCATGAC+TGG + chr4_1:1873262-1873281 Msa0528890:intron 30.0%
TATCACCAACATTATTTGGA+GGG - chr4_1:1873293-1873312 None:intergenic 30.0%
GTTGTATCACCAACATTATT+TGG - chr4_1:1873297-1873316 None:intergenic 30.0%
AAGCACAAAAAATCAGAGAA+AGG - chr4_1:1873366-1873385 None:intergenic 30.0%
ATATGTTCTTCTCTTTCTTC+AGG - chr4_1:1873841-1873860 None:intergenic 30.0%
TGCTACAAGTGAAGAAAAAA+TGG + chr4_1:1874137-1874156 Msa0528890:CDS 30.0%
AAGACATAAATAGATGCTGT+GGG - chr4_1:1874209-1874228 None:intergenic 30.0%
CACAGACATAAAACTATCTA+AGG - chr4_1:1874279-1874298 None:intergenic 30.0%
ACAACTTATTCAGCATAGTA+TGG - chr4_1:1874305-1874324 None:intergenic 30.0%
GCTGAATAAGTTGTTATAAG+GGG + chr4_1:1874311-1874330 Msa0528890:intron 30.0%
AAAGTAAAATGGGTCAAACA+GGG - chr4_1:1874902-1874921 None:intergenic 30.0%
AAAAGTAAAATGGGTCAAAC+AGG - chr4_1:1874903-1874922 None:intergenic 30.0%
CTTTGGTCTCTATATGAAAA+AGG - chr4_1:1874993-1875012 None:intergenic 30.0%
GCAAACTCAATTTAGTACTT+TGG - chr4_1:1875010-1875029 None:intergenic 30.0%
TAATGACTGCAACTTATTTC+TGG + chr4_1:1875076-1875095 Msa0528890:intron 30.0%
TCATAATTGAACGTTAGGTA+GGG - chr4_1:1875337-1875356 None:intergenic 30.0%
ATCATAATTGAACGTTAGGT+AGG - chr4_1:1875338-1875357 None:intergenic 30.0%
AAGTTAGCGAAATTGGAAAA+AGG - chr4_1:1875577-1875596 None:intergenic 30.0%
AACTTAAATGCATGTTAGCA+AGG - chr4_1:1875630-1875649 None:intergenic 30.0%
!! CTAACATGCATTTAAGTTGA+AGG + chr4_1:1875632-1875651 Msa0528890:intron 30.0%
TGTGATGTAAGTTTCAAACT+TGG + chr4_1:1875670-1875689 Msa0528890:intron 30.0%
GTGATGTAAGTTTCAAACTT+GGG + chr4_1:1875671-1875690 Msa0528890:intron 30.0%
AGACATACATCATTTCTAAC+GGG - chr4_1:1875791-1875810 None:intergenic 30.0%
!! TTATTTCTCCACTTTTCAAG+TGG + chr4_1:1875831-1875850 Msa0528890:intron 30.0%
!!! TTTTTTTTCTTTGAGCGGTA+TGG - chr4_1:1875982-1876001 None:intergenic 30.0%
ATATTGATGAGTGCAACAAA+TGG + chr4_1:1876117-1876136 Msa0528890:intron 30.0%
!!! ACGAGTTGATTTTTATGATG+AGG + chr4_1:1876176-1876195 Msa0528890:intron 30.0%
AGAGCCTAAAACAATATACT+AGG + chr4_1:1876218-1876237 Msa0528890:intron 30.0%
GAGCCTAAAACAATATACTA+GGG + chr4_1:1876219-1876238 Msa0528890:intron 30.0%
AGAGTTGTAACACTACTTTA+TGG - chr4_1:1876256-1876275 None:intergenic 30.0%
TATACAACTTCACCCTAAAA+AGG + chr4_1:1876301-1876320 Msa0528890:intron 30.0%
ATACAACTTCACCCTAAAAA+GGG + chr4_1:1876302-1876321 Msa0528890:intron 30.0%
! ACCTATCATTTCCCTTTTTA+GGG - chr4_1:1876316-1876335 None:intergenic 30.0%
TGAAAAATCCAAAGAAGTCT+TGG + chr4_1:1876366-1876385 Msa0528890:intron 30.0%
AACATTAACCAAGACTTCTT+TGG - chr4_1:1876377-1876396 None:intergenic 30.0%
GGAAATACATCACTTGATAA+CGG + chr4_1:1876424-1876443 Msa0528890:intron 30.0%
!! TATTTTTCGGTTGAAGAAGA+TGG + chr4_1:1876460-1876479 Msa0528890:intron 30.0%
GTATTTATGTGCTATATTGG+AGG + chr4_1:1876632-1876651 Msa0528890:intron 30.0%
TAACAGGGTTATATCAAGTT+GGG - chr4_1:1876885-1876904 None:intergenic 30.0%
AGATCATATGATCAGATAAC+GGG - chr4_1:1876926-1876945 None:intergenic 30.0%
GAGATCATATGATCAGATAA+CGG - chr4_1:1876927-1876946 None:intergenic 30.0%
TCTCTTACATCAAGTTCTTA+TGG + chr4_1:1876943-1876962 Msa0528890:intron 30.0%
GTTCTTATGGTTAGACATTA+TGG + chr4_1:1876956-1876975 Msa0528890:intron 30.0%
TTACATTATGCCTTAGAATC+TGG + chr4_1:1876989-1877008 Msa0528890:intron 30.0%
TACATTATGCCTTAGAATCT+GGG + chr4_1:1876990-1877009 Msa0528890:intron 30.0%
GTGTAGTGCATATAAAGTTA+GGG - chr4_1:1877064-1877083 None:intergenic 30.0%
AGTGTAGTGCATATAAAGTT+AGG - chr4_1:1877065-1877084 None:intergenic 30.0%
TAACTTTATATGCACTACAC+TGG + chr4_1:1877064-1877083 Msa0528890:intron 30.0%
CTAGTATGATATTGGACATT+CGG + chr4_1:1877206-1877225 Msa0528890:intron 30.0%
CAACATTCTTCATCTCATAA+AGG - chr4_1:1877289-1877308 None:intergenic 30.0%
CTTTATGAGATGAAGAATGT+TGG + chr4_1:1877287-1877306 Msa0528890:intron 30.0%
TGTTGTGAAATTACAGATTG+CGG + chr4_1:1877370-1877389 Msa0528890:intron 30.0%
ACAACACTAGGTTTAACATT+GGG + chr4_1:1877566-1877585 Msa0528890:intron 30.0%
! AAGCTCCTCTTCAATTTTTA+TGG + chr4_1:1877954-1877973 Msa0528890:intron 30.0%
TGAACATTGTGTAAAATGAG+TGG - chr4_1:1878088-1878107 None:intergenic 30.0%
AATCTTAAACCTTGGATCTT+AGG - chr4_1:1878365-1878384 None:intergenic 30.0%
GTACAAACAATCTTAAACCT+TGG - chr4_1:1878373-1878392 None:intergenic 30.0%
! AACCTTAGGTTTGATTTAGA+AGG + chr4_1:1878500-1878519 Msa0528890:intron 30.0%
ATCACCATAGAGAAGAAATT+TGG + chr4_1:1878689-1878708 Msa0528890:intron 30.0%
TCACCATAGAGAAGAAATTT+GGG + chr4_1:1878690-1878709 Msa0528890:intron 30.0%
TTTCCCAAATTTCTTCTCTA+TGG - chr4_1:1878696-1878715 None:intergenic 30.0%
AGTAAGAAAACTGTTTGCAA+GGG + chr4_1:1878739-1878758 Msa0528890:intron 30.0%
! TATGTGTTTGACAGCTTTTA+TGG + chr4_1:1878974-1878993 Msa0528890:intron 30.0%
AGAGAATAATCTGTACACAA+TGG - chr4_1:1879005-1879024 None:intergenic 30.0%
CCTTAAAGATATGCTATCAT+TGG - chr4_1:1879084-1879103 None:intergenic 30.0%
CCAATGATAGCATATCTTTA+AGG + chr4_1:1879081-1879100 Msa0528890:intron 30.0%
GTCATTATACACATAGCAAA+AGG + chr4_1:1879174-1879193 Msa0528890:intron 30.0%
! CCAGATAGGTCAATTATTTT+CGG - chr4_1:1879240-1879259 None:intergenic 30.0%
AAATGCATAGTAGAATATGC+TGG + chr4_1:1879358-1879377 Msa0528890:intron 30.0%
ATAGTAGAATATGCTGGATT+GGG + chr4_1:1879364-1879383 Msa0528890:intron 30.0%
GAAAATTGAAAAGGTCAAGA+CGG + chr4_1:1879437-1879456 Msa0528890:intron 30.0%
GCAAATTGTAAAATGGTAGA+TGG + chr4_1:1879646-1879665 Msa0528890:CDS 30.0%
CTTCAAAAATTGGAGCTTAT+TGG - chr4_1:1879705-1879724 None:intergenic 30.0%
AGGGCCAAATTGAAAACAAA+TGG + chr4_1:1870202-1870221 Msa0528890:intron 35.0%
CACAGAGTCAGTGATTAATA+AGG + chr4_1:1870339-1870358 Msa0528890:intron 35.0%
AGAGTCAGTGATTAATAAGG+TGG + chr4_1:1870342-1870361 Msa0528890:intron 35.0%
ACTTGTTCATTTGTTTGGGT+TGG - chr4_1:1870592-1870611 None:intergenic 35.0%
ATTAGCAAGATAAGGGGAAA+AGG - chr4_1:1870620-1870639 None:intergenic 35.0%
! TTTTCCCCTTATCTTGCTAA+TGG + chr4_1:1870619-1870638 Msa0528890:intron 35.0%
AGGATCCATTAGCAAGATAA+GGG - chr4_1:1870627-1870646 None:intergenic 35.0%
GTAATCACTAACCCTTTGTA+AGG - chr4_1:1870928-1870947 None:intergenic 35.0%
! AGGGCATTCATACTTAAATG+AGG + chr4_1:1871120-1871139 Msa0528890:intron 35.0%
AGCATATGTCAGAGATGATT+TGG + chr4_1:1871161-1871180 Msa0528890:intron 35.0%
GCATATGTCAGAGATGATTT+GGG + chr4_1:1871162-1871181 Msa0528890:intron 35.0%
AGAAATTTGCAAATCGGGTT+AGG - chr4_1:1871559-1871578 None:intergenic 35.0%
AATGAATGTTCGTGCTTCAT+AGG - chr4_1:1871601-1871620 None:intergenic 35.0%
TATGAAGCACGAACATTCAT+TGG + chr4_1:1871600-1871619 Msa0528890:intron 35.0%
!!! ACCAAAATCTATGCCGTTTT+GGG - chr4_1:1871857-1871876 None:intergenic 35.0%
!! TACCAAAATCTATGCCGTTT+TGG - chr4_1:1871858-1871877 None:intergenic 35.0%
!! AAAACGGCATAGATTTTGGT+AGG + chr4_1:1871857-1871876 Msa0528890:intron 35.0%
CTCAATCAATAAGCACTTTG+AGG + chr4_1:1872115-1872134 Msa0528890:intron 35.0%
! AATCAATAAGCACTTTGAGG+AGG + chr4_1:1872118-1872137 Msa0528890:intron 35.0%
!! AATATTAACCAAGAGGCGTT+AGG - chr4_1:1872165-1872184 None:intergenic 35.0%
CTTTGACATGGCGAAATTAT+TGG - chr4_1:1872200-1872219 None:intergenic 35.0%
ATAATTTCGCCATGTCAAAG+AGG + chr4_1:1872200-1872219 Msa0528890:intron 35.0%
TCTATCTTACCTCTTTGACA+TGG - chr4_1:1872212-1872231 None:intergenic 35.0%
ATTGAAGTAGGAACACAATC+AGG + chr4_1:1872721-1872740 Msa0528890:intron 35.0%
TTGAAGTAGGAACACAATCA+GGG + chr4_1:1872722-1872741 Msa0528890:intron 35.0%
! ACAATCAGGGTGTTAAATCT+TGG + chr4_1:1872735-1872754 Msa0528890:intron 35.0%
! ATGCTTTGTGTTTTCGTTTG+CGG + chr4_1:1873075-1873094 Msa0528890:intron 35.0%
ATCACCAACATTATTTGGAG+GGG - chr4_1:1873292-1873311 None:intergenic 35.0%
GTATCACCAACATTATTTGG+AGG - chr4_1:1873294-1873313 None:intergenic 35.0%
TGAAATGTACAGCATAGAAG+AGG - chr4_1:1873319-1873338 None:intergenic 35.0%
!! CTGTACATTTCACCGATTTA+TGG + chr4_1:1873327-1873346 Msa0528890:intron 35.0%
TATTGAAGAAGATGGAGTAG+AGG - chr4_1:1873491-1873510 None:intergenic 35.0%
TGTTCGGTTATTGAAGAAGA+TGG - chr4_1:1873499-1873518 None:intergenic 35.0%
GGAAGATGATGTTGTTCAAT+CGG + chr4_1:1873681-1873700 Msa0528890:CDS 35.0%
!! AAATAAGCAAAAGCATCTCG+AGG + chr4_1:1873873-1873892 Msa0528890:CDS 35.0%
GCGTATCGTGTATTAGAAAT+TGG + chr4_1:1874010-1874029 Msa0528890:CDS 35.0%
GTAGTAGTAACCCAACATTA+GGG + chr4_1:1874034-1874053 Msa0528890:CDS 35.0%
TAACATCCATCCCTAATGTT+GGG - chr4_1:1874047-1874066 None:intergenic 35.0%
TTAACATCCATCCCTAATGT+TGG - chr4_1:1874048-1874067 None:intergenic 35.0%
TGGATGTTAATAGCACATTG+CGG + chr4_1:1874058-1874077 Msa0528890:CDS 35.0%
! TTGTCGTTCCAAGTGTTATT+TGG + chr4_1:1874112-1874131 Msa0528890:CDS 35.0%
GTAGCATACCAAATAACACT+TGG - chr4_1:1874123-1874142 None:intergenic 35.0%
GGAAATCATTGATACCTACA+AGG + chr4_1:1874158-1874177 Msa0528890:CDS 35.0%
GAAGACATAAATAGATGCTG+TGG - chr4_1:1874210-1874229 None:intergenic 35.0%
!! TAGCATTGATATGCATGTGT+AGG + chr4_1:1874351-1874370 Msa0528890:intron 35.0%
!! AGCATTGATATGCATGTGTA+GGG + chr4_1:1874352-1874371 Msa0528890:intron 35.0%
GCAAAAAGCTAGACACATTA+GGG - chr4_1:1874728-1874747 None:intergenic 35.0%
AGCAAAAAGCTAGACACATT+AGG - chr4_1:1874729-1874748 None:intergenic 35.0%
GCAATCAATTGACCTACAAA+TGG - chr4_1:1874781-1874800 None:intergenic 35.0%
!!! GATTGCAAGCATTTTGACTT+TGG + chr4_1:1874795-1874814 Msa0528890:intron 35.0%
!!! AAGCATTTTGACTTTGGTGA+AGG + chr4_1:1874801-1874820 Msa0528890:intron 35.0%
GGTATAGCACTATAGTGTAA+GGG + chr4_1:1875220-1875239 Msa0528890:intron 35.0%
GGTACTAGTATTATCAATCG+CGG - chr4_1:1875275-1875294 None:intergenic 35.0%
CATAATTGAACGTTAGGTAG+GGG - chr4_1:1875336-1875355 None:intergenic 35.0%
! TAGGCTCTAGTTGTTCTTTA+AGG - chr4_1:1875403-1875422 None:intergenic 35.0%
TAAAGATGAGAACCAGGATA+AGG - chr4_1:1875553-1875572 None:intergenic 35.0%
AAAGGATAAAGATGAGAACC+AGG - chr4_1:1875559-1875578 None:intergenic 35.0%
ACTTAATACATGATGCCATC+AGG + chr4_1:1875593-1875612 Msa0528890:intron 35.0%
!! CATGCATTTAAGTTGAAGGT+CGG + chr4_1:1875636-1875655 Msa0528890:intron 35.0%
TTGTATCCAATGCTTCAACA+TGG + chr4_1:1875756-1875775 Msa0528890:intron 35.0%
! TATCTATGCCACTTGAAAAG+TGG - chr4_1:1875842-1875861 None:intergenic 35.0%
GCATAGATAAATTGCACCTT+GGG + chr4_1:1875853-1875872 Msa0528890:intron 35.0%
! TACAACTAAGCTATTTCCCA+AGG - chr4_1:1875872-1875891 None:intergenic 35.0%
TTGGGAAATAGCTTAGTTGT+AGG + chr4_1:1875871-1875890 Msa0528890:intron 35.0%
ATGATGAGGACACACTAAAT+TGG + chr4_1:1876190-1876209 Msa0528890:intron 35.0%
TGATGAGGACACACTAAATT+GGG + chr4_1:1876191-1876210 Msa0528890:intron 35.0%
ACCCTAAAAAGGGAAATGAT+AGG + chr4_1:1876312-1876331 Msa0528890:intron 35.0%
! CACCTATCATTTCCCTTTTT+AGG - chr4_1:1876317-1876336 None:intergenic 35.0%
CTAAAAAGGGAAATGATAGG+TGG + chr4_1:1876315-1876334 Msa0528890:intron 35.0%
!!! AGTACTGACGTCATTTTCAT+CGG - chr4_1:1876504-1876523 None:intergenic 35.0%
CAAGTGTTCTCAATGATAGA+TGG - chr4_1:1876673-1876692 None:intergenic 35.0%
ACTTGTTCGTAGCAAGAATA+AGG + chr4_1:1876688-1876707 Msa0528890:intron 35.0%
! AAGTTGGGGTATCACAATTT+CGG - chr4_1:1876870-1876889 None:intergenic 35.0%
! AACAGGGTTATATCAAGTTG+GGG - chr4_1:1876884-1876903 None:intergenic 35.0%
CTAACAGGGTTATATCAAGT+TGG - chr4_1:1876886-1876905 None:intergenic 35.0%
ACTTGATATAACCCTGTTAG+TGG + chr4_1:1876886-1876905 Msa0528890:intron 35.0%
!! CGGTTTTGTAAGATTGAGTT+AGG - chr4_1:1877021-1877040 None:intergenic 35.0%
!! CTTACAAAACCGCTTTTGTA+AGG + chr4_1:1877029-1877048 Msa0528890:intron 35.0%
AACCAAATGCCGTAATTAGA+CGG + chr4_1:1877133-1877152 Msa0528890:intron 35.0%
! AAGGAAGCACATCATTTCTT+TGG + chr4_1:1877238-1877257 Msa0528890:intron 35.0%
! AGGAAGCACATCATTTCTTT+GGG + chr4_1:1877239-1877258 Msa0528890:intron 35.0%
GATCAAAGAAAGAGACCATA+TGG + chr4_1:1877338-1877357 Msa0528890:intron 35.0%
! ACAACACTGATTAGACCATA+TGG - chr4_1:1877356-1877375 None:intergenic 35.0%
TTGTCCAATAATGGCTATAG+TGG - chr4_1:1877442-1877461 None:intergenic 35.0%
!! AACGAAGTGTTGTCCAATAA+TGG - chr4_1:1877451-1877470 None:intergenic 35.0%
ATAGCGTGTTGTGGAATAAT+AGG + chr4_1:1877475-1877494 Msa0528890:intron 35.0%
CATTTGCCAAATAGCAGATA+TGG - chr4_1:1877546-1877565 None:intergenic 35.0%
ATTTGGCAAATGACAACACT+AGG + chr4_1:1877554-1877573 Msa0528890:intron 35.0%
GACAACACTAGGTTTAACAT+TGG + chr4_1:1877565-1877584 Msa0528890:intron 35.0%
CAACACTAGGTTTAACATTG+GGG + chr4_1:1877567-1877586 Msa0528890:intron 35.0%
AAGTGAAGAAGCAACCATTT+GGG - chr4_1:1877760-1877779 None:intergenic 35.0%
AAAGTGAAGAAGCAACCATT+TGG - chr4_1:1877761-1877780 None:intergenic 35.0%
GGAAGCTATTAAGACAACTA+TGG - chr4_1:1877859-1877878 None:intergenic 35.0%
CTTCTTGTGAATTGACATCA+AGG - chr4_1:1878050-1878069 None:intergenic 35.0%
CGATTATGTTTCGGAAAGTT+AGG + chr4_1:1878136-1878155 Msa0528890:intron 35.0%
TCTCATATAAAGCTAGGTGA+GGG - chr4_1:1878180-1878199 None:intergenic 35.0%
ACGTACTCTCATATAAAGCT+AGG - chr4_1:1878186-1878205 None:intergenic 35.0%
! GACATGCTTTATTCATGTCA+TGG + chr4_1:1878206-1878225 Msa0528890:intron 35.0%
! AGATTGTTTGTACTTTGAGG+TGG + chr4_1:1878380-1878399 Msa0528890:intron 35.0%
! AAAGGTAGAAAGTACATCCA+TGG + chr4_1:1878416-1878435 Msa0528890:intron 35.0%
! AAGGTAGAAAGTACATCCAT+GGG + chr4_1:1878417-1878436 Msa0528890:intron 35.0%
CTCATACTACAACTAACCTT+AGG + chr4_1:1878486-1878505 Msa0528890:intron 35.0%
CACCTTCTAAATCAAACCTA+AGG - chr4_1:1878505-1878524 None:intergenic 35.0%
GGGATTGTGAAGAGAAAAAT+AGG - chr4_1:1878528-1878547 None:intergenic 35.0%
TTCCTTCAGTGAAAAAACTG+GGG - chr4_1:1878594-1878613 None:intergenic 35.0%
CTTCCTTCAGTGAAAAAACT+GGG - chr4_1:1878595-1878614 None:intergenic 35.0%
ACTTCCTTCAGTGAAAAAAC+TGG - chr4_1:1878596-1878615 None:intergenic 35.0%
GAACTTGATGAAATAGTCCT+TGG + chr4_1:1878618-1878637 Msa0528890:intron 35.0%
GAGTAAGAAAACTGTTTGCA+AGG + chr4_1:1878738-1878757 Msa0528890:intron 35.0%
CAAGGGAAATTGTCTATCAT+GGG + chr4_1:1878756-1878775 Msa0528890:intron 35.0%
GAAATTGTCTATCATGGGTT+TGG + chr4_1:1878761-1878780 Msa0528890:intron 35.0%
!! CGTAGTATTTGTGCTATTTG+AGG - chr4_1:1878890-1878909 None:intergenic 35.0%
AGTGTTAAGGCAAACCTTAA+GGG - chr4_1:1878943-1878962 None:intergenic 35.0%
! GCATATCTTTAAGGGAGATA+TGG + chr4_1:1879090-1879109 Msa0528890:intron 35.0%
TTAGGACGACAAGTGAATAA+GGG - chr4_1:1879133-1879152 None:intergenic 35.0%
! TTTAGGACGACAAGTGAATA+AGG - chr4_1:1879134-1879153 None:intergenic 35.0%
! CTCTAGATTCCTTCTTGTTT+AGG - chr4_1:1879151-1879170 None:intergenic 35.0%
! GTCAATTATTTTCGGACTGA+GGG - chr4_1:1879232-1879251 None:intergenic 35.0%
CCGAAAATAATTGACCTATC+TGG + chr4_1:1879237-1879256 Msa0528890:intron 35.0%
TATGTGTGAAATGACCAGAT+AGG - chr4_1:1879254-1879273 None:intergenic 35.0%
CATAGTAGAATATGCTGGAT+TGG + chr4_1:1879363-1879382 Msa0528890:intron 35.0%
! TTAGAGCATCTTAATCGCTA+GGG - chr4_1:1879477-1879496 None:intergenic 35.0%
! TTTAGAGCATCTTAATCGCT+AGG - chr4_1:1879478-1879497 None:intergenic 35.0%
! AACTACAGTGTACACCATTT+TGG + chr4_1:1879760-1879779 Msa0528890:three_prime_UTR 35.0%
!! TGTACACCATTTTGGTCATA+TGG + chr4_1:1879768-1879787 Msa0528890:three_prime_UTR 35.0%
!! GTACACCATTTTGGTCATAT+GGG + chr4_1:1879769-1879788 Msa0528890:three_prime_UTR 35.0%
!! TACACCATTTTGGTCATATG+GGG + chr4_1:1879770-1879789 Msa0528890:three_prime_UTR 35.0%
! GAATTTGTCAGGAGACTTTT+GGG + chr4_1:1879998-1880017 Msa0528890:three_prime_UTR 35.0%
! AATTTGTCAGGAGACTTTTG+GGG + chr4_1:1879999-1880018 Msa0528890:three_prime_UTR 35.0%
GGATCCATTAGCAAGATAAG+GGG - chr4_1:1870626-1870645 None:intergenic 40.0%
GAGGATCCATTAGCAAGATA+AGG - chr4_1:1870628-1870647 None:intergenic 40.0%
CACCTTCTTTCTTAGGAGTA+GGG + chr4_1:1870648-1870667 Msa0528890:intron 40.0%
ATCCCTACTCCTAAGAAAGA+AGG - chr4_1:1870653-1870672 None:intergenic 40.0%
GGTGAGACTCATATAGTGAT+AGG - chr4_1:1870747-1870766 None:intergenic 40.0%
AAGGTCCTAACTTCTTTCTC+AGG + chr4_1:1870854-1870873 Msa0528890:intron 40.0%
TCCTAGTTTAGCCCTAGTTT+AGG + chr4_1:1871008-1871027 Msa0528890:intron 40.0%
ACCTAAACTAGGGCTAAACT+AGG - chr4_1:1871012-1871031 None:intergenic 40.0%
!! CACTCATCAAAGAGCATCTA+AGG - chr4_1:1871054-1871073 None:intergenic 40.0%
GACTGAAAACTTTGCAGATC+CGG + chr4_1:1871210-1871229 Msa0528890:intron 40.0%
GCAGCTAATAGCTAGATTCA+TGG - chr4_1:1871266-1871285 None:intergenic 40.0%
!! TAGCTATTAGCTGCTGCTTT+CGG + chr4_1:1871272-1871291 Msa0528890:intron 40.0%
!! ATCACGTGCCCTTCATTTTT+AGG - chr4_1:1871778-1871797 None:intergenic 40.0%
!!! AAATCTATGCCGTTTTGGGA+GGG - chr4_1:1871853-1871872 None:intergenic 40.0%
!!! AAAATCTATGCCGTTTTGGG+AGG - chr4_1:1871854-1871873 None:intergenic 40.0%
! TCCCAAAACGGCATAGATTT+TGG + chr4_1:1871853-1871872 Msa0528890:intron 40.0%
TTGAATGAGACACAACACAG+AGG - chr4_1:1871922-1871941 None:intergenic 40.0%
! TAAGCACTTTGAGGAGGTTT+AGG + chr4_1:1872124-1872143 Msa0528890:intron 40.0%
! AAGCACTTTGAGGAGGTTTA+GGG + chr4_1:1872125-1872144 Msa0528890:intron 40.0%
ATCTTGGAAATATCTCTCCC+CGG + chr4_1:1872751-1872770 Msa0528890:intron 40.0%
TTTGAGCGGTGAAAAACTTG+CGG + chr4_1:1872797-1872816 Msa0528890:intron 40.0%
GACATACATAGCGAGTGTTT+GGG - chr4_1:1872925-1872944 None:intergenic 40.0%
AGACATACATAGCGAGTGTT+TGG - chr4_1:1872926-1872945 None:intergenic 40.0%
! TCTAGAATAAAAAGGGGCAC+CGG - chr4_1:1872987-1873006 None:intergenic 40.0%
!!! GACTTTTTAAGGCCGTGATA+AGG + chr4_1:1873007-1873026 Msa0528890:intron 40.0%
! TGTTTTCGTTTGCGGAAACA+TGG + chr4_1:1873083-1873102 Msa0528890:intron 40.0%
TTTGCGGAAACATGGTTAGA+AGG + chr4_1:1873091-1873110 Msa0528890:intron 40.0%
ATAAGAACAGTCTGCACACA+AGG - chr4_1:1873163-1873182 None:intergenic 40.0%
CTGTGTAAGTTCTTTGCTCA+TGG + chr4_1:1873219-1873238 Msa0528890:intron 40.0%
AAAGCCCCTCCAAATAATGT+TGG + chr4_1:1873285-1873304 Msa0528890:intron 40.0%
!!! GTGCTTGTGTTGTTTTGTTG+TGG + chr4_1:1873380-1873399 Msa0528890:intron 40.0%
CAGAAAGGAGTTTGTGCTTA+TGG + chr4_1:1873421-1873440 Msa0528890:intron 40.0%
!! TACAGCCGATTCTGAAACAA+GGG - chr4_1:1873527-1873546 None:intergenic 40.0%
AATACCCGAGTTACATCGAA+TGG + chr4_1:1873559-1873578 Msa0528890:CDS 40.0%
AACACCATTCGATGTAACTC+GGG - chr4_1:1873566-1873585 None:intergenic 40.0%
CAACACCATTCGATGTAACT+CGG - chr4_1:1873567-1873586 None:intergenic 40.0%
TGTTCACTGGGAAGAACAAA+GGG - chr4_1:1873622-1873641 None:intergenic 40.0%
TTGTTCACTGGGAAGAACAA+AGG - chr4_1:1873623-1873642 None:intergenic 40.0%
TTGTGCAGATTCTTGATTCC+AGG - chr4_1:1873647-1873666 None:intergenic 40.0%
TGCACAACTTGACTTCCTAA+GGG + chr4_1:1873660-1873679 Msa0528890:CDS 40.0%
GAACAACATCATCTTCCCTT+AGG - chr4_1:1873678-1873697 None:intergenic 40.0%
GCAGCAGCAAATGAACAAAT+CGG - chr4_1:1873730-1873749 None:intergenic 40.0%
! ATTTGTTCATTTGCTGCTGC+TGG + chr4_1:1873730-1873749 Msa0528890:CDS 40.0%
GAACAATGTCCTCATGTACA+CGG + chr4_1:1873769-1873788 Msa0528890:CDS 40.0%
CATAAATCTCCGTGTACATG+AGG - chr4_1:1873781-1873800 None:intergenic 40.0%
! AAGCATTGTCTTCCACATGA+GGG - chr4_1:1873805-1873824 None:intergenic 40.0%
CTAATACACGATACGCAGAA+CGG - chr4_1:1874006-1874025 None:intergenic 40.0%
CGTAGTAGTAACCCAACATT+AGG + chr4_1:1874033-1874052 Msa0528890:CDS 40.0%
TAGTAACCCAACATTAGGGA+TGG + chr4_1:1874038-1874057 Msa0528890:CDS 40.0%
GGATGTTAATAGCACATTGC+GGG + chr4_1:1874059-1874078 Msa0528890:CDS 40.0%
! TAAGATAGCTTGCGACAGAT+AGG - chr4_1:1874090-1874109 None:intergenic 40.0%
TTACTTGAGCTTTGCCTTGT+AGG - chr4_1:1874175-1874194 None:intergenic 40.0%
! GCATTGATATGCATGTGTAG+GGG + chr4_1:1874353-1874372 Msa0528890:intron 40.0%
AAGCATGTGTGAGACTGTTT+GGG - chr4_1:1874664-1874683 None:intergenic 40.0%
TAAGCATGTGTGAGACTGTT+TGG - chr4_1:1874665-1874684 None:intergenic 40.0%
!! TAGACACATTAGGGCTAGTT+TGG - chr4_1:1874719-1874738 None:intergenic 40.0%
TAAAATGGGTCAAACAGGGA+GGG - chr4_1:1874898-1874917 None:intergenic 40.0%
! AAGTTGCAGTCATTAGCTTC+AGG - chr4_1:1875071-1875090 None:intergenic 40.0%
CGGTATAGCACTATAGTGTA+AGG + chr4_1:1875219-1875238 Msa0528890:intron 40.0%
CCTGATGTCTTTGGCAATTA+TGG - chr4_1:1875520-1875539 None:intergenic 40.0%
CCATAATTGCCAAAGACATC+AGG + chr4_1:1875517-1875536 Msa0528890:CDS 40.0%
AGAGAGAAACCTGATGTCTT+TGG - chr4_1:1875529-1875548 None:intergenic 40.0%
AATGCTTCAACATGGTGCTT+GGG + chr4_1:1875764-1875783 Msa0528890:intron 40.0%
GGCATAGATAAATTGCACCT+TGG + chr4_1:1875852-1875871 Msa0528890:intron 40.0%
!! ATGATAGGTGGTTGATGATG+AGG + chr4_1:1876327-1876346 Msa0528890:intron 40.0%
!! GGTTGATGATGAGGAATTTG+AGG + chr4_1:1876336-1876355 Msa0528890:intron 40.0%
GATGAGGAATTTGAGGAGAA+TGG + chr4_1:1876343-1876362 Msa0528890:intron 40.0%
TCCAAAGCAGAAGAAGTAGA+TGG + chr4_1:1876403-1876422 Msa0528890:intron 40.0%
TCCATCTACTTCTTCTGCTT+TGG - chr4_1:1876407-1876426 None:intergenic 40.0%
GTGTTCTCAATGATAGATGG+CGG - chr4_1:1876670-1876689 None:intergenic 40.0%
TTAGTTGACTGTAGCTGTGT+TGG + chr4_1:1876756-1876775 Msa0528890:intron 40.0%
CTATAAGAGAACAGATGGTG+AGG - chr4_1:1876829-1876848 None:intergenic 40.0%
TAACAAGGTCACCACTAACA+GGG - chr4_1:1876900-1876919 None:intergenic 40.0%
!! TCAGATAACGGGTTGTAACA+AGG - chr4_1:1876915-1876934 None:intergenic 40.0%
ACTACACTGGTCATATCTCT+AGG + chr4_1:1877077-1877096 Msa0528890:intron 40.0%
CATATCTCTAGGCAATGTGA+AGG + chr4_1:1877088-1877107 Msa0528890:intron 40.0%
ATCCGTCTAATTACGGCATT+TGG - chr4_1:1877138-1877157 None:intergenic 40.0%
AATGCCGTAATTAGACGGAT+AGG + chr4_1:1877138-1877157 Msa0528890:intron 40.0%
ATGCCGTAATTAGACGGATA+GGG + chr4_1:1877139-1877158 Msa0528890:intron 40.0%
AGGCGGAATTTCCAACATTA+TGG + chr4_1:1877176-1877195 Msa0528890:intron 40.0%
GGCGGAATTTCCAACATTAT+GGG + chr4_1:1877177-1877196 Msa0528890:intron 40.0%
GCGGAATTTCCAACATTATG+GGG + chr4_1:1877178-1877197 Msa0528890:intron 40.0%
CGGAATTTCCAACATTATGG+GGG + chr4_1:1877179-1877198 Msa0528890:intron 40.0%
TGATATTGGACATTCGGACT+AGG + chr4_1:1877212-1877231 Msa0528890:intron 40.0%
! GGAAGCACATCATTTCTTTG+GGG + chr4_1:1877240-1877259 Msa0528890:intron 40.0%
! TCGTTCTAAATAGCGTGTTG+TGG + chr4_1:1877466-1877485 Msa0528890:intron 40.0%
TTGCCAAATAGCAGATATGG+CGG - chr4_1:1877543-1877562 None:intergenic 40.0%
GGATAGCAGCAATCTAAGTT+TGG - chr4_1:1877633-1877652 None:intergenic 40.0%
TCATATAAAGCTAGGTGAGG+GGG - chr4_1:1878178-1878197 None:intergenic 40.0%
CTCATATAAAGCTAGGTGAG+GGG - chr4_1:1878179-1878198 None:intergenic 40.0%
CTCTCATATAAAGCTAGGTG+AGG - chr4_1:1878181-1878200 None:intergenic 40.0%
TAAATACCGCCTAAGATCCA+AGG + chr4_1:1878353-1878372 Msa0528890:intron 40.0%
CTTAAACCTTGGATCTTAGG+CGG - chr4_1:1878362-1878381 None:intergenic 40.0%
!! GTTTGTACTTTGAGGTGGAA+AGG + chr4_1:1878385-1878404 Msa0528890:intron 40.0%
!! TACTTTGAGGTGGAAAGGTT+TGG + chr4_1:1878390-1878409 Msa0528890:intron 40.0%
!! ACTTTGAGGTGGAAAGGTTT+GGG + chr4_1:1878391-1878410 Msa0528890:intron 40.0%
! AGGTAGAAAGTACATCCATG+GGG + chr4_1:1878418-1878437 Msa0528890:intron 40.0%
!! ATGTTCTAAGAACTCCAGAG+AGG - chr4_1:1878462-1878481 None:intergenic 40.0%
TTCACAATCCCATTGTGATG+TGG + chr4_1:1878537-1878556 Msa0528890:intron 40.0%
TCACAACACCACATCACAAT+GGG - chr4_1:1878548-1878567 None:intergenic 40.0%
ATTAATGTCTGGCAATGCCA+AGG - chr4_1:1878638-1878657 None:intergenic 40.0%
GCAAGGGAAATTGTCTATCA+TGG + chr4_1:1878755-1878774 Msa0528890:intron 40.0%
! TTGTCTATCATGGGTTTGGT+CGG + chr4_1:1878765-1878784 Msa0528890:intron 40.0%
CAGTGTTAAGGCAAACCTTA+AGG - chr4_1:1878944-1878963 None:intergenic 40.0%
GTTTGCCTTAACACTGAACT+TGG + chr4_1:1878948-1878967 Msa0528890:intron 40.0%
TAGCTCCAAGTTCAGTGTTA+AGG - chr4_1:1878956-1878975 None:intergenic 40.0%
GCCAAAACAGCAAATGGAAA+GGG - chr4_1:1879042-1879061 None:intergenic 40.0%
AGCCAAAACAGCAAATGGAA+AGG - chr4_1:1879043-1879062 None:intergenic 40.0%
AGAAGAGCCAAAACAGCAAA+TGG - chr4_1:1879048-1879067 None:intergenic 40.0%
! TCTTTAAGGGAGATATGGTC+AGG + chr4_1:1879095-1879114 Msa0528890:intron 40.0%
ATATGGTCAGGTCATTCTTG+TGG + chr4_1:1879107-1879126 Msa0528890:intron 40.0%
ACTTGTCGTCCTAAACAAGA+AGG + chr4_1:1879139-1879158 Msa0528890:intron 40.0%
CTGAGGGAGTAATTCATAAC+AGG - chr4_1:1879216-1879235 None:intergenic 40.0%
! GGTCAATTATTTTCGGACTG+AGG - chr4_1:1879233-1879252 None:intergenic 40.0%
!! ATTTTGGTCATATGGGGAGA+GGG + chr4_1:1879776-1879795 Msa0528890:three_prime_UTR 40.0%
TGACATTGCACCAAGAATCT+TGG + chr4_1:1879934-1879953 Msa0528890:three_prime_UTR 40.0%
GACATTGCACCAAGAATCTT+GGG + chr4_1:1879935-1879954 Msa0528890:three_prime_UTR 40.0%
GATCATGTTCCCAAGATTCT+TGG - chr4_1:1879947-1879966 None:intergenic 40.0%
! GGAATTTGTCAGGAGACTTT+TGG + chr4_1:1879997-1880016 Msa0528890:three_prime_UTR 40.0%
GATCCTCCACCTTCTTTCTT+AGG + chr4_1:1870641-1870660 Msa0528890:intron 45.0%
ACTCCTAAGAAAGAAGGTGG+AGG - chr4_1:1870647-1870666 None:intergenic 45.0%
CCTACTCCTAAGAAAGAAGG+TGG - chr4_1:1870650-1870669 None:intergenic 45.0%
CCACCTTCTTTCTTAGGAGT+AGG + chr4_1:1870647-1870666 Msa0528890:intron 45.0%
! TGATTACCCTTTTATGCCCC+AGG + chr4_1:1870941-1870960 Msa0528890:intron 45.0%
TCTACTTCCTACTTGCACCT+GGG - chr4_1:1870961-1870980 None:intergenic 45.0%
! GATGATTTGGGCCATATACG+TGG + chr4_1:1871174-1871193 Msa0528890:intron 45.0%
GACAAACAACCCTCCCAAAA+CGG + chr4_1:1871841-1871860 Msa0528890:intron 45.0%
ACACAACACAGAGGTTAGGT+TGG - chr4_1:1871913-1871932 None:intergenic 45.0%
TGAGACACAACACAGAGGTT+AGG - chr4_1:1871917-1871936 None:intergenic 45.0%
TGAGGTAGCCAAAAAACGTG+AGG - chr4_1:1872064-1872083 None:intergenic 45.0%
ACTTTGATCCTAACGCCTCT+TGG + chr4_1:1872154-1872173 Msa0528890:intron 45.0%
TCTTGGAAATATCTCTCCCC+GGG + chr4_1:1872752-1872771 Msa0528890:intron 45.0%
! AATGCTGCTTGAATGCACGT+TGG + chr4_1:1872882-1872901 Msa0528890:intron 45.0%
ATAGCGAGTGTTTGGGAAAG+CGG - chr4_1:1872918-1872937 None:intergenic 45.0%
!! ACAGCCGATTCTGAAACAAG+GGG - chr4_1:1873526-1873545 None:intergenic 45.0%
!! GTACAGCCGATTCTGAAACA+AGG - chr4_1:1873528-1873547 None:intergenic 45.0%
GTTTCAGAATCGGCTGTACT+TGG + chr4_1:1873529-1873548 Msa0528890:CDS 45.0%
! TGATTCCAGGCTTGTTCACT+GGG - chr4_1:1873634-1873653 None:intergenic 45.0%
! TTGATTCCAGGCTTGTTCAC+TGG - chr4_1:1873635-1873654 None:intergenic 45.0%
CTGCACAACTTGACTTCCTA+AGG + chr4_1:1873659-1873678 Msa0528890:CDS 45.0%
GAACAAATCGGAAGCTCAGA+AGG - chr4_1:1873718-1873737 None:intergenic 45.0%
AGCATTGTCTTCCACATGAG+GGG - chr4_1:1873804-1873823 None:intergenic 45.0%
! CAAGCATTGTCTTCCACATG+AGG - chr4_1:1873806-1873825 None:intergenic 45.0%
GACAATGCTTGCATCCTTTC+CGG + chr4_1:1873815-1873834 Msa0528890:CDS 45.0%
GTTCTTCTCTTTCTTCAGGC+CGG - chr4_1:1873837-1873856 None:intergenic 45.0%
!! GCTTTGAAAGAACACGCTCA+AGG - chr4_1:1873936-1873955 None:intergenic 45.0%
GCGTGTTCTTTCAAAGCCTA+CGG + chr4_1:1873939-1873958 Msa0528890:intron 45.0%
AGACTGTTTGGGAGAGCTTA+AGG - chr4_1:1874653-1874672 None:intergenic 45.0%
!! ACATTAGGGCTAGTTTGGAC+AGG - chr4_1:1874714-1874733 None:intergenic 45.0%
! AGAAGCAGCTAGTACCGAAA+GGG - chr4_1:1874833-1874852 None:intergenic 45.0%
! TAGAAGCAGCTAGTACCGAA+AGG - chr4_1:1874834-1874853 None:intergenic 45.0%
AAAATGGGTCAAACAGGGAG+GGG - chr4_1:1874897-1874916 None:intergenic 45.0%
GTAAAATGGGTCAAACAGGG+AGG - chr4_1:1874899-1874918 None:intergenic 45.0%
TAGTGCTATACCGCTGCTAT+AGG - chr4_1:1875212-1875231 None:intergenic 45.0%
TTGCAGCATGCATATCGTGA+TGG + chr4_1:1875444-1875463 Msa0528890:intron 45.0%
! AGGTAGCTTTGCGTCATCTT+GGG + chr4_1:1875478-1875497 Msa0528890:CDS 45.0%
GGTTTCTCTCTACCTTATCC+TGG + chr4_1:1875538-1875557 Msa0528890:intron 45.0%
! ACATGATGCCATCAGGTTGT+CGG + chr4_1:1875600-1875619 Msa0528890:intron 45.0%
AAGGAAATCCGACAACCTGA+TGG - chr4_1:1875611-1875630 None:intergenic 45.0%
CAAGCACCATGTTGAAGCAT+TGG - chr4_1:1875765-1875784 None:intergenic 45.0%
CAATGCTTCAACATGGTGCT+TGG + chr4_1:1875763-1875782 Msa0528890:intron 45.0%
TGAGTGCAACAAATGGCTAG+TGG + chr4_1:1876124-1876143 Msa0528890:intron 45.0%
GAGTGCAACAAATGGCTAGT+GGG + chr4_1:1876125-1876144 Msa0528890:intron 45.0%
AAATGGCTAGTGGGAGAGAA+TGG + chr4_1:1876134-1876153 Msa0528890:intron 45.0%
GTGCTATATTGGAGGACTTG+TGG + chr4_1:1876640-1876659 Msa0528890:intron 45.0%
GTAACAAGGTCACCACTAAC+AGG - chr4_1:1876901-1876920 None:intergenic 45.0%
TATGCCTTAGAATCTGGGTC+TGG + chr4_1:1876995-1877014 Msa0528890:intron 45.0%
!! AAAACCGCTTTTGTAAGGCG+AGG + chr4_1:1877034-1877053 Msa0528890:intron 45.0%
!! AAACCGCTTTTGTAAGGCGA+GGG + chr4_1:1877035-1877054 Msa0528890:intron 45.0%
! TCTAGGCAATGTGAAGGTGT+TGG + chr4_1:1877094-1877113 Msa0528890:intron 45.0%
TGCCGTAATTAGACGGATAG+GGG + chr4_1:1877140-1877159 Msa0528890:intron 45.0%
CTCCCCTATCCGTCTAATTA+CGG - chr4_1:1877145-1877164 None:intergenic 45.0%
TGGAAATTCCGCCTTTGTTG+CGG - chr4_1:1877170-1877189 None:intergenic 45.0%
GGGGTTCGCTAGTATGATAT+TGG + chr4_1:1877198-1877217 Msa0528890:intron 45.0%
AGCGCCACTATAGCCATTAT+TGG + chr4_1:1877435-1877454 Msa0528890:intron 45.0%
! GCTAAGGCGCTATAGATTAG+CGG - chr4_1:1877519-1877538 None:intergenic 45.0%
GTATTCTGCAGAGACAACAC+AGG - chr4_1:1877880-1877899 None:intergenic 45.0%
! CAACAAAAAAGCTTCGGTGC+TGG - chr4_1:1878009-1878028 None:intergenic 45.0%
!!! CAGCACCGAAGCTTTTTTGT+TGG + chr4_1:1878007-1878026 Msa0528890:intron 45.0%
GGTGGAAAGGTTTGGGTAAA+AGG + chr4_1:1878398-1878417 Msa0528890:intron 45.0%
TGTATGAACAGCTTCCTCTC+TGG + chr4_1:1878445-1878464 Msa0528890:intron 45.0%
GTCACAACACCACATCACAA+TGG - chr4_1:1878549-1878568 None:intergenic 45.0%
!!! TGCCCCAGTTTTTTCACTGA+AGG + chr4_1:1878589-1878608 Msa0528890:intron 45.0%
! TGTCTATCATGGGTTTGGTC+GGG + chr4_1:1878766-1878785 Msa0528890:intron 45.0%
GATTTGATGGAGAAACTCGC+TGG + chr4_1:1878788-1878807 Msa0528890:intron 45.0%
!! ATGGAAAGGGCATTGCACAA+AGG - chr4_1:1879029-1879048 None:intergenic 45.0%
!!! GCCCTTTCCATTTGCTGTTT+TGG + chr4_1:1879038-1879057 Msa0528890:intron 45.0%
CTCTCCCCATATGACCAAAA+TGG - chr4_1:1879777-1879796 None:intergenic 45.0%
!! CATTTTGGTCATATGGGGAG+AGG + chr4_1:1879775-1879794 Msa0528890:three_prime_UTR 45.0%
! TTTTGGTCATATGGGGAGAG+GGG + chr4_1:1879777-1879796 Msa0528890:three_prime_UTR 45.0%
!!! TTTATTTTTTTAAAATTTGA+TGG + chr4_1:1870502-1870521 Msa0528890:intron 5.0%
!!! TTTTCATTTATTTTTATAAA+TGG - chr4_1:1870681-1870700 None:intergenic 5.0%
!!! TTTATATGAATTTAAAATAT+GGG + chr4_1:1880034-1880053 Msa0528890:three_prime_UTR 5.0%
CTTGCACCTGGGGCATAAAA+GGG - chr4_1:1870950-1870969 None:intergenic 50.0%
ACTTGCACCTGGGGCATAAA+AGG - chr4_1:1870951-1870970 None:intergenic 50.0%
TTTATGCCCCAGGTGCAAGT+AGG + chr4_1:1870951-1870970 Msa0528890:intron 50.0%
CTACTTCCTACTTGCACCTG+GGG - chr4_1:1870960-1870979 None:intergenic 50.0%
CTCTACTTCCTACTTGCACC+TGG - chr4_1:1870962-1870981 None:intergenic 50.0%
CCAAGTCGTTGCCACGTATA+TGG - chr4_1:1871188-1871207 None:intergenic 50.0%
CCATATACGTGGCAACGACT+TGG + chr4_1:1871185-1871204 Msa0528890:intron 50.0%
AGATCCGGTTGTTGCTGAAG+CGG + chr4_1:1871225-1871244 Msa0528890:intron 50.0%
GTAACCGCTTCAGCAACAAC+CGG - chr4_1:1871232-1871251 None:intergenic 50.0%
GTATCACACGTGTTCAGCAC+GGG - chr4_1:1871638-1871657 None:intergenic 50.0%
CGTATCACACGTGTTCAGCA+CGG - chr4_1:1871639-1871658 None:intergenic 50.0%
CACCAGATACGACACAGACA+CGG - chr4_1:1871727-1871746 None:intergenic 50.0%
CTTGGAAATATCTCTCCCCG+GGG + chr4_1:1872753-1872772 Msa0528890:intron 50.0%
TTGGAAATATCTCTCCCCGG+GGG + chr4_1:1872754-1872773 Msa0528890:intron 50.0%
! ATATGCATAGCCTTACCCCC+GGG - chr4_1:1872772-1872791 None:intergenic 50.0%
! CATATGCATAGCCTTACCCC+CGG - chr4_1:1872773-1872792 None:intergenic 50.0%
CGGTGAAAAACTTGCGGTGA+TGG + chr4_1:1872803-1872822 Msa0528890:intron 50.0%
!! GAATAAAAAGGGGCACCGGA+TGG - chr4_1:1872983-1873002 None:intergenic 50.0%
CTCATGGAGCGTGTCTGAAA+GGG + chr4_1:1873235-1873254 Msa0528890:intron 50.0%
TCATGGAGCGTGTCTGAAAG+GGG + chr4_1:1873236-1873255 Msa0528890:intron 50.0%
! TGAAACAAGGGGCTGGTGTT+CGG - chr4_1:1873515-1873534 None:intergenic 50.0%
! CCAGCCCCTTGTTTCAGAAT+CGG + chr4_1:1873519-1873538 Msa0528890:CDS 50.0%
TTCTTCCCAGTGAACAAGCC+TGG + chr4_1:1873626-1873645 Msa0528890:CDS 50.0%
GGAGATTTATGCCCCTCATG+TGG + chr4_1:1873790-1873809 Msa0528890:CDS 50.0%
TCTCTTTCTTCAGGCCGGAA+AGG - chr4_1:1873832-1873851 None:intergenic 50.0%
GTTCAGAGTGACGCCCTATT+TGG + chr4_1:1874434-1874453 Msa0528890:intron 50.0%
GGTGAAGGAAACTGCCCTTT+CGG + chr4_1:1874816-1874835 Msa0528890:intron 50.0%
CGGTACTAGCTGCTTCTACA+AGG + chr4_1:1874836-1874855 Msa0528890:intron 50.0%
AAATGGGTCAAACAGGGAGG+GGG - chr4_1:1874896-1874915 None:intergenic 50.0%
GAGGCTATAGCCTATAGCAG+CGG + chr4_1:1875199-1875218 Msa0528890:intron 50.0%
ATATCGTGATGGCCGTCTTG+AGG + chr4_1:1875455-1875474 Msa0528890:CDS 50.0%
GCAAAGCTACCTCCTCAAGA+CGG - chr4_1:1875470-1875489 None:intergenic 50.0%
! GAGGTAGCTTTGCGTCATCT+TGG + chr4_1:1875477-1875496 Msa0528890:CDS 50.0%
! GGTAGCTTTGCGTCATCTTG+GGG + chr4_1:1875479-1875498 Msa0528890:CDS 50.0%
TAGGCCAGACCCAGATTCTA+AGG - chr4_1:1877002-1877021 None:intergenic 50.0%
AAGCCCTCGCCTTACAAAAG+CGG - chr4_1:1877041-1877060 None:intergenic 50.0%
!! AGGCAATGTGAAGGTGTTGG+AGG + chr4_1:1877097-1877116 Msa0528890:intron 50.0%
CGTAATTAGACGGATAGGGG+AGG + chr4_1:1877143-1877162 Msa0528890:intron 50.0%
CTAGCGAACCCCCATAATGT+TGG - chr4_1:1877190-1877209 None:intergenic 50.0%
! GGACATTCGGACTAGGTAGA+AGG + chr4_1:1877219-1877238 Msa0528890:intron 50.0%
! GCTATAGCTTTACAGCGCAG+TGG - chr4_1:1877418-1877437 None:intergenic 50.0%
!! GAGGGGGTATTGATAAGACG+CGG - chr4_1:1878162-1878181 None:intergenic 50.0%
CTGTTCATACAGCAACCCCA+TGG - chr4_1:1878436-1878455 None:intergenic 50.0%
! TGGGTTTGGTCGGGATTTGA+TGG + chr4_1:1878775-1878794 Msa0528890:intron 50.0%
TTGATGGAGAAACTCGCTGG+TGG + chr4_1:1878791-1878810 Msa0528890:intron 50.0%
TGCGGATGAAAGAGCCCTTA+AGG + chr4_1:1878926-1878945 Msa0528890:intron 50.0%
GAGCATCTTAATCGCTAGGG+AGG - chr4_1:1879474-1879493 None:intergenic 50.0%
!! GCACAGTGCAGCTTTTTCTC+TGG - chr4_1:1879605-1879624 None:intergenic 50.0%
GTCCGTGTCTGTGTCGTATC+TGG + chr4_1:1871722-1871741 Msa0528890:intron 55.0%
AATATCTCTCCCCGGGGGTA+AGG + chr4_1:1872759-1872778 Msa0528890:intron 55.0%
! TATGCATAGCCTTACCCCCG+GGG - chr4_1:1872771-1872790 None:intergenic 55.0%
TATCCTCCCCAGATTCCACC+TGG + chr4_1:1872945-1872964 Msa0528890:intron 55.0%
GCTCATGGAGCGTGTCTGAA+AGG + chr4_1:1873234-1873253 Msa0528890:intron 55.0%
GTGCTTATGGTAGTCGCTGC+AGG + chr4_1:1873434-1873453 Msa0528890:intron 55.0%
!! CCGATTCTGAAACAAGGGGC+TGG - chr4_1:1873522-1873541 None:intergenic 55.0%
CTGCTGGAAACTGTCCACGA+GGG + chr4_1:1873746-1873765 Msa0528890:CDS 55.0%
TGCTGGAAACTGTCCACGAG+GGG + chr4_1:1873747-1873766 Msa0528890:CDS 55.0%
TGAGGACATTGTTCCCCTCG+TGG - chr4_1:1873763-1873782 None:intergenic 55.0%
AACTTACGCTCAGCTGCCGT+AGG - chr4_1:1873958-1873977 None:intergenic 55.0%
ACGGCAGCTGAGCGTAAGTT+TGG + chr4_1:1873958-1873977 Msa0528890:CDS 55.0%
AATGGGTCAAACAGGGAGGG+GGG - chr4_1:1874895-1874914 None:intergenic 55.0%
ATAGGGGAGGACCGCAACAA+AGG + chr4_1:1877156-1877175 Msa0528890:intron 55.0%
TAGCAGATATGGCGGCGCTA+AGG - chr4_1:1877535-1877554 None:intergenic 55.0%
GCGCCGCCATATCTGCTATT+TGG + chr4_1:1877537-1877556 Msa0528890:intron 55.0%
!! CGGTGCTGGTGCATCTTGTT+TGG - chr4_1:1877995-1878014 None:intergenic 55.0%
ATGGAGAAACTCGCTGGTGG+TGG + chr4_1:1878794-1878813 Msa0528890:intron 55.0%
GGGCTCTTTCATCCGCACAA+GGG - chr4_1:1878923-1878942 None:intergenic 55.0%
AGGGCTCTTTCATCCGCACA+AGG - chr4_1:1878924-1878943 None:intergenic 55.0%
CTCCCCAGATTCCACCTGGT+GGG + chr4_1:1872949-1872968 Msa0528890:intron 60.0%
CTCCCACCAGGTGGAATCTG+GGG - chr4_1:1872954-1872973 None:intergenic 60.0%
GCTCCCACCAGGTGGAATCT+GGG - chr4_1:1872955-1872974 None:intergenic 60.0%
GCTGCTGGAAACTGTCCACG+AGG + chr4_1:1873745-1873764 Msa0528890:CDS 60.0%
ATGGGTCAAACAGGGAGGGG+GGG - chr4_1:1874894-1874913 None:intergenic 60.0%
TCGTGATGGCCGTCTTGAGG+AGG + chr4_1:1875458-1875477 Msa0528890:CDS 60.0%
CGTCATCTTGGGGCTGCAGA+TGG + chr4_1:1875489-1875508 Msa0528890:CDS 60.0%
CGAAACCATGCGCCCTTGTG+CGG + chr4_1:1878908-1878927 Msa0528890:intron 60.0%
! TTCATCCGCACAAGGGCGCA+TGG - chr4_1:1878916-1878935 None:intergenic 60.0%
CCACCAGGTGGAATCTGGGG+AGG - chr4_1:1872951-1872970 None:intergenic 65.0%
CCTCCCCAGATTCCACCTGG+TGG + chr4_1:1872948-1872967 Msa0528890:intron 65.0%
GGCTCCCACCAGGTGGAATC+TGG - chr4_1:1872956-1872975 None:intergenic 65.0%
TGGTGGGAGCCTCGTCCATC+CGG + chr4_1:1872965-1872984 Msa0528890:intron 65.0%
!! AAAGGGGCACCGGATGGACG+AGG - chr4_1:1872977-1872996 None:intergenic 65.0%
GGGGAGGACCGCAACAAAGG+CGG + chr4_1:1877159-1877178 Msa0528890:intron 65.0%
TGGACGAGGCTCCCACCAGG+TGG - chr4_1:1872963-1872982 None:intergenic 70.0%
GGATGGACGAGGCTCCCACC+AGG - chr4_1:1872966-1872985 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 1870029 1880086 1870029 ID=Msa0528890;Name=Msa0528890
chr4_1 mRNA 1870029 1880086 1870029 ID=Msa0528890-mRNA-1;Parent=Msa0528890;Name=Msa0528890-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.14|0.25|0.87|0.14|0.25|8|378|311
chr4_1 exon 1870029 1870034 1870029 ID=Msa0528890-mRNA-1:exon:559;Parent=Msa0528890-mRNA-1
chr4_1 exon 1873215 1873222 1873215 ID=Msa0528890-mRNA-1:exon:560;Parent=Msa0528890-mRNA-1
chr4_1 exon 1873456 1873702 1873456 ID=Msa0528890-mRNA-1:exon:561;Parent=Msa0528890-mRNA-1
chr4_1 exon 1873724 1873942 1873724 ID=Msa0528890-mRNA-1:exon:562;Parent=Msa0528890-mRNA-1
chr4_1 exon 1873955 1874190 1873955 ID=Msa0528890-mRNA-1:exon:563;Parent=Msa0528890-mRNA-1
chr4_1 exon 1874845 1874857 1874845 ID=Msa0528890-mRNA-1:exon:564;Parent=Msa0528890-mRNA-1
chr4_1 exon 1875450 1875538 1875450 ID=Msa0528890-mRNA-1:exon:565;Parent=Msa0528890-mRNA-1
chr4_1 exon 1879591 1880086 1879591 ID=Msa0528890-mRNA-1:exon:566;Parent=Msa0528890-mRNA-1
chr4_1 CDS 1870029 1870034 1870029 ID=Msa0528890-mRNA-1:cds;Parent=Msa0528890-mRNA-1
chr4_1 CDS 1873215 1873222 1873215 ID=Msa0528890-mRNA-1:cds;Parent=Msa0528890-mRNA-1
chr4_1 CDS 1873456 1873702 1873456 ID=Msa0528890-mRNA-1:cds;Parent=Msa0528890-mRNA-1
chr4_1 CDS 1873724 1873942 1873724 ID=Msa0528890-mRNA-1:cds;Parent=Msa0528890-mRNA-1
chr4_1 CDS 1873955 1874190 1873955 ID=Msa0528890-mRNA-1:cds;Parent=Msa0528890-mRNA-1
chr4_1 CDS 1874845 1874857 1874845 ID=Msa0528890-mRNA-1:cds;Parent=Msa0528890-mRNA-1
chr4_1 CDS 1875450 1875538 1875450 ID=Msa0528890-mRNA-1:cds;Parent=Msa0528890-mRNA-1
chr4_1 CDS 1879591 1879708 1879591 ID=Msa0528890-mRNA-1:cds;Parent=Msa0528890-mRNA-1
chr4_1 three_prime_UTR 1879709 1880086 1879709 ID=Msa0528890-mRNA-1:three_prime_utr;Parent=Msa0528890-mRNA-1
Gene Sequence

>Msa0528890

ATGAAGGGTTCTGTGTATGATCATGTCAAAGCTTCTCGAGCACAGTCCTCTACTCCATCTTCTTCAATAACCGAACACCAGCCCCTTGTTTCAGAATCGGCTGTACTTGGTAATACTAATACCCGAGTTACATCGAATGGTGTTGCTACAGCTGCAGAATTTTCTCTTTTCAGCACTCCCTTTGTTCTTCCCAGTGAACAAGCCTGGAATCAAGAATCTGCACAACTTGACTTCCTAAGGGAAGATGATGTTGTTCAATCGCTTCCGATTTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGGGAACAATGTCCTCATGTACACGGAGATTTATGCCCCTCATGTGGAAGACAATGCTTGCATCCTTTCCGGCCTGAAGAAAGAGAAGAACATATGATGAGTTGCAAAAATAAGCAAAAGCATCTCGAGGCATTGAAAAGAAGTCAAGAAATTGAATGCAGTGTTTGCCTTGAGCGTCCTACGGCAGCTGAGCGTAAGTTTGGTCTGCTATCTGAATGCGATCATCCGTTCTGCGTATCGTGTATTAGAAATTGGCGTAGTAGTAACCCAACATTAGGGATGGATGTTAATAGCACATTGCGGGCTTGTCCTATCTGTCGCAAGCTATCTTACTTTGTCGTTCCAAGTGTTATTTGGTATGCTACAAGTGAAGAAAAAATGGAAATCATTGATACCTACAAGGCAAAGCTCAACTGCTTCTACAAGCATGCATATCGTGATGGCCGTCTTGAGGAGGTAGCTTTGCGTCATCTTGGGGCTGCAGATGGCGACACCATAATTGCCAAAGACATCAGTTTCAAAGGTACCAGAGAAAAAGCTGCACTGTGCATTCCATCATGTAATAAAAGTGCAAATTGTAAAATGGTAGATGGACATATATATGCTTTTGTACAATGGAATAAATTCCAATAA
Protein sequence

>Msa0528890

MKGSVYDHVKASRAQSSTPSSSITEHQPLVSESAVLGNTNTRVTSNGVATAAEFSLFSTPFVLPSEQAWNQESAQLDFLREDDVVQSLPICSFAAAGNCPRGEQCPHVHGDLCPSCGRQCLHPFRPEEREEHMMSCKNKQKHLEALKRSQEIECSVCLERPTAAERKFGLLSECDHPFCVSCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVVPSVIWYATSEEKMEIIDTYKAKLNCFYKHAYRDGRLEEVALRHLGAADGDTIIAKDISFKGTREKAALCIPSCNKSANCKMVDGHIYAFVQWNKFQ*