Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528920 | XP_013470448.1 | 83.704 | 405 | 13 | 4 | 23 | 374 | 97 | 501 | 0.0 | 625 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528920 | sp|B6TGN4|MTEF4_MAIZE | 43.003 | 393 | 169 | 4 | 24 | 363 | 94 | 484 | 1.07e-105 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528920 | A0A072VS35 | 83.704 | 405 | 13 | 4 | 23 | 374 | 97 | 501 | 0.0 | 625 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0528920 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528920 | MtrunA17_Chr1g0212691 | 83.704 | 405 | 13 | 4 | 23 | 374 | 97 | 501 | 0.0 | 625 |
| Msa0528920 | MtrunA17_Chr8g0391881 | 67.372 | 331 | 24 | 4 | 23 | 300 | 75 | 374 | 1.53e-137 | 396 |
| Msa0528920 | MtrunA17_Chr5g0428941 | 44.772 | 373 | 151 | 4 | 24 | 341 | 130 | 502 | 9.28e-101 | 308 |
| Msa0528920 | MtrunA17_Chr8g0391861 | 85.714 | 112 | 14 | 1 | 263 | 374 | 1 | 110 | 1.03e-52 | 171 |
| Msa0528920 | MtrunA17_Chr8g0391871 | 88.333 | 60 | 7 | 0 | 315 | 374 | 1 | 60 | 1.45e-29 | 108 |
| Msa0528920 | MtrunA17_Chr2g0294671 | 27.632 | 304 | 187 | 8 | 32 | 328 | 210 | 487 | 7.64e-25 | 105 |
| Msa0528920 | MtrunA17_Chr4g0034981 | 24.510 | 306 | 171 | 5 | 29 | 329 | 341 | 591 | 8.20e-25 | 105 |
| Msa0528920 | MtrunA17_Chr4g0043941 | 25.000 | 280 | 183 | 7 | 50 | 324 | 62 | 319 | 1.33e-21 | 94.4 |
| Msa0528920 | MtrunA17_Chr6g0448821 | 25.163 | 306 | 194 | 7 | 37 | 329 | 79 | 362 | 3.53e-21 | 94.0 |
| Msa0528920 | MtrunA17_Chr3g0127891 | 24.080 | 299 | 199 | 9 | 29 | 323 | 217 | 491 | 1.40e-16 | 81.3 |
| Msa0528920 | MtrunA17_Chr5g0445491 | 24.206 | 252 | 161 | 7 | 59 | 305 | 224 | 450 | 2.29e-16 | 80.5 |
| Msa0528920 | MtrunA17_Chr2g0311181 | 24.911 | 281 | 179 | 7 | 71 | 348 | 75 | 326 | 1.11e-15 | 77.4 |
| Msa0528920 | MtrunA17_Chr5g0417641 | 38.679 | 106 | 64 | 1 | 220 | 324 | 188 | 293 | 2.74e-14 | 72.8 |
| Msa0528920 | MtrunA17_Chr2g0304101 | 26.378 | 254 | 131 | 7 | 111 | 328 | 76 | 309 | 1.68e-13 | 70.5 |
| Msa0528920 | MtrunA17_Chr2g0308761 | 29.245 | 212 | 123 | 6 | 99 | 307 | 167 | 354 | 1.38e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528920 | AT2G44020.1 | 67.488 | 406 | 78 | 4 | 23 | 374 | 102 | 507 | 0.0 | 526 |
| Msa0528920 | AT4G02990.2 | 43.869 | 367 | 153 | 2 | 24 | 337 | 138 | 504 | 1.11e-100 | 308 |
| Msa0528920 | AT4G02990.1 | 43.869 | 367 | 153 | 2 | 24 | 337 | 138 | 504 | 1.11e-100 | 308 |
| Msa0528920 | AT2G21710.1 | 23.599 | 339 | 233 | 5 | 26 | 359 | 309 | 626 | 2.03e-27 | 114 |
| Msa0528920 | AT2G21710.1 | 26.471 | 204 | 124 | 6 | 100 | 298 | 280 | 462 | 8.73e-11 | 63.9 |
| Msa0528920 | AT4G38160.4 | 23.944 | 284 | 188 | 5 | 50 | 327 | 63 | 324 | 1.28e-24 | 103 |
| Msa0528920 | AT4G38160.1 | 23.944 | 284 | 188 | 5 | 50 | 327 | 63 | 324 | 1.28e-24 | 103 |
| Msa0528920 | AT4G38160.2 | 23.944 | 284 | 188 | 5 | 50 | 327 | 63 | 324 | 2.34e-24 | 103 |
| Msa0528920 | AT4G38160.3 | 23.944 | 284 | 188 | 5 | 50 | 327 | 63 | 324 | 3.68e-24 | 102 |
| Msa0528920 | AT1G78930.1 | 23.750 | 320 | 220 | 6 | 32 | 329 | 263 | 580 | 4.68e-23 | 101 |
| Msa0528920 | AT1G78930.1 | 23.194 | 263 | 177 | 4 | 50 | 308 | 249 | 490 | 3.53e-12 | 68.2 |
| Msa0528920 | AT4G14605.2 | 27.586 | 261 | 160 | 7 | 67 | 324 | 234 | 468 | 2.34e-20 | 92.8 |
| Msa0528920 | AT4G14605.1 | 27.586 | 261 | 160 | 7 | 67 | 324 | 234 | 468 | 2.34e-20 | 92.8 |
| Msa0528920 | AT5G55580.2 | 24.583 | 240 | 155 | 6 | 69 | 303 | 117 | 335 | 4.59e-16 | 79.3 |
| Msa0528920 | AT5G55580.1 | 24.583 | 240 | 155 | 6 | 69 | 303 | 223 | 441 | 1.02e-15 | 79.0 |
| Msa0528920 | AT2G21710.2 | 22.097 | 267 | 184 | 4 | 26 | 287 | 309 | 556 | 1.13e-15 | 79.0 |
| Msa0528920 | AT2G21710.2 | 26.471 | 204 | 124 | 6 | 100 | 298 | 280 | 462 | 6.70e-11 | 64.3 |
| Msa0528920 | AT2G21710.3 | 21.887 | 265 | 183 | 4 | 26 | 285 | 309 | 554 | 8.39e-15 | 76.3 |
| Msa0528920 | AT2G21710.3 | 26.471 | 204 | 124 | 6 | 100 | 298 | 280 | 462 | 7.24e-11 | 63.9 |
| Msa0528920 | AT5G54180.1 | 26.692 | 266 | 159 | 9 | 86 | 325 | 235 | 490 | 1.24e-14 | 75.5 |
| Msa0528920 | AT2G03050.1 | 38.182 | 110 | 66 | 2 | 220 | 327 | 163 | 272 | 5.40e-12 | 66.2 |
| Msa0528920 | AT2G03050.2 | 38.182 | 110 | 66 | 2 | 220 | 327 | 164 | 273 | 5.55e-12 | 66.2 |
| Msa0528920 | AT2G34620.1 | 31.532 | 111 | 75 | 1 | 220 | 329 | 186 | 296 | 1.99e-11 | 64.7 |
| Msa0528920 | AT5G06811.1 | 21.725 | 313 | 198 | 12 | 32 | 327 | 278 | 560 | 2.48e-11 | 65.5 |
| Msa0528920 | AT2G36000.2 | 23.607 | 305 | 165 | 13 | 33 | 331 | 73 | 315 | 4.82e-11 | 63.5 |
| Msa0528920 | AT2G36000.1 | 22.848 | 302 | 165 | 12 | 33 | 328 | 73 | 312 | 7.47e-11 | 63.2 |
Find 86 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCAGTATCCTTTGATTT+TGG | 0.075546 | 4_1:+1905455 | Msa0528920:CDS |
| CTCCTGTTATTAAGTTTCTT+AGG | 0.190808 | 4_1:+1905610 | Msa0528920:CDS |
| GTTGAGTTTATTCAGAAATT+AGG | 0.214945 | 4_1:+1905414 | Msa0528920:CDS |
| TCAGTATCCACAGATTATAT+TGG | 0.279500 | 4_1:+1905946 | Msa0528920:CDS |
| AGAATACTTCACCTATAGTT+TGG | 0.284806 | 4_1:+1906269 | Msa0528920:CDS |
| CTCATGTCTTCAACGGTTGC+AGG | 0.300279 | 4_1:-1905384 | None:intergenic |
| AAACTATAGGTGAAGTATTC+TGG | 0.305579 | 4_1:-1906267 | None:intergenic |
| TCACCTATAGTTTGGAATCT+AGG | 0.308236 | 4_1:+1906277 | Msa0528920:CDS |
| CTCTTAAGCCTCTGGTATCT+AGG | 0.309752 | 4_1:-1906306 | None:intergenic |
| GGATAAAGTGTTCATTGAAT+TGG | 0.316271 | 4_1:+1906334 | Msa0528920:CDS |
| TACCGAAGTGCGACGGTTCC+AGG | 0.319747 | 4_1:-1905227 | None:intergenic |
| TCCTGTTATTAAGTTTCTTA+GGG | 0.320182 | 4_1:+1905611 | Msa0528920:CDS |
| TTATATTGGGTTGCCTCTTA+AGG | 0.346882 | 4_1:+1905960 | Msa0528920:CDS |
| AGCTTAAACCCTAAAAGTTC+AGG | 0.348375 | 4_1:-1905681 | None:intergenic |
| CCCCTAAGAAACTTAATAAC+AGG | 0.351787 | 4_1:-1905612 | None:intergenic |
| ATGTAGAGAAAGATGATATT+GGG | 0.358260 | 4_1:+1905640 | Msa0528920:CDS |
| GAAGACAATTTAGCCTTAAG+AGG | 0.360188 | 4_1:-1905973 | None:intergenic |
| CAGTATCCACAGATTATATT+GGG | 0.362497 | 4_1:+1905947 | Msa0528920:CDS |
| TCAAAATGTGATTATGAAAC+CGG | 0.364444 | 4_1:+1906086 | Msa0528920:CDS |
| ATCTGAAACTATATCATTCC+CGG | 0.367449 | 4_1:-1906463 | None:intergenic |
| TTAGTATTGGTGTTAATCCT+AGG | 0.373470 | 4_1:+1905739 | Msa0528920:CDS |
| GATGTAGAGAAAGATGATAT+TGG | 0.374971 | 4_1:+1905639 | Msa0528920:CDS |
| TCCCCTTGCTCTTAAGCCTC+TGG | 0.375995 | 4_1:-1906314 | None:intergenic |
| ATCGCAGGATGTGGCTAGTA+TGG | 0.382352 | 4_1:+1906137 | Msa0528920:CDS |
| GTGGCTTATCTTGTTAGTAT+TGG | 0.382878 | 4_1:+1905726 | Msa0528920:CDS |
| GAGATTTGAAGAGAGATTGC+AGG | 0.401297 | 4_1:+1906377 | Msa0528920:CDS |
| TCCTAGGGATATTGGTCCTA+TGG | 0.421118 | 4_1:+1905755 | Msa0528920:CDS |
| GCAATCTCTCTTCAAATCTC+TGG | 0.437449 | 4_1:-1906374 | None:intergenic |
| AATCCTAGATTCCAAACTAT+AGG | 0.441030 | 4_1:-1906280 | None:intergenic |
| GAATGAAGGACCTATACTTT+CGG | 0.441319 | 4_1:-1906415 | None:intergenic |
| ACCACCCTTGCAAACCCTTC+CGG | 0.446986 | 4_1:-1906033 | None:intergenic |
| GGTGTTAATCCTAGGGATAT+TGG | 0.451217 | 4_1:+1905747 | Msa0528920:CDS |
| ATAGGTCCTTCATTCTGTAT+TGG | 0.452739 | 4_1:+1906423 | Msa0528920:CDS |
| TATAGTTTCAGATGAGGAAG+AGG | 0.454451 | 4_1:+1906473 | Msa0528920:CDS |
| TACTTCTTCAAAAGTGAGAT+GGG | 0.459036 | 4_1:+1906216 | Msa0528920:CDS |
| GAGGAAGGAATGTTTGCCTT+CGG | 0.461475 | 4_1:+1905916 | Msa0528920:intron |
| AAACCTCACCGTTACCGTCC+TGG | 0.463835 | 4_1:+1905209 | Msa0528920:CDS |
| AGGAAATCTGCTCCTACTAC+TGG | 0.467062 | 4_1:+1905176 | Msa0528920:CDS |
| TCCGGAAGGGTTTGCAAGGG+TGG | 0.482240 | 4_1:+1906032 | Msa0528920:CDS |
| ATACTGATTTATATCATCAA+TGG | 0.482461 | 4_1:-1905442 | None:intergenic |
| GGGATTTCTAGGTCTAAACT+TGG | 0.492563 | 4_1:+1905531 | Msa0528920:CDS |
| GGTCCTTCATTCTGTATTGG+TGG | 0.495994 | 4_1:+1906426 | Msa0528920:CDS |
| GGAAGGGTTTGCAAGGGTGG+TGG | 0.497371 | 4_1:+1906035 | Msa0528920:CDS |
| TACCAGAGGCTTAAGAGCAA+GGG | 0.502139 | 4_1:+1906312 | Msa0528920:CDS |
| GGTGATCAAGTGTCCTCAAT+TGG | 0.503619 | 4_1:+1906158 | Msa0528920:CDS |
| TTACTTCTTCAAAAGTGAGA+TGG | 0.508844 | 4_1:+1906215 | Msa0528920:CDS |
| TTTGAAGCTGAAGATTGATC+CGG | 0.520863 | 4_1:+1906014 | Msa0528920:CDS |
| TAGTATTGGTGTTAATCCTA+GGG | 0.522188 | 4_1:+1905740 | Msa0528920:CDS |
| ACTCGCAGCGCAACCAATTG+AGG | 0.528224 | 4_1:-1906171 | None:intergenic |
| TATATCGAAACCGAAAGTAT+AGG | 0.540273 | 4_1:+1906405 | Msa0528920:CDS |
| GTCCTTCATTCTGTATTGGT+GGG | 0.540317 | 4_1:+1906427 | Msa0528920:CDS |
| GGCAATACCATCGCAGGATG+TGG | 0.548475 | 4_1:+1906128 | Msa0528920:CDS |
| AGCTGAAGATTGATCCGGAA+GGG | 0.553058 | 4_1:+1906019 | Msa0528920:CDS |
| TGATGAAGACTAACCACTTG+TGG | 0.559927 | 4_1:-1906066 | None:intergenic |
| AGATTTGAAGAGAGATTGCA+GGG | 0.561148 | 4_1:+1906378 | Msa0528920:CDS |
| ATACCAGAGGCTTAAGAGCA+AGG | 0.565715 | 4_1:+1906311 | Msa0528920:CDS |
| TTCCCACCAATACAGAATGA+AGG | 0.566084 | 4_1:-1906429 | None:intergenic |
| TTGATCCGGAAGGGTTTGCA+AGG | 0.567631 | 4_1:+1906028 | Msa0528920:CDS |
| CGACGGTTCCAGGACGGTAA+CGG | 0.569651 | 4_1:-1905217 | None:intergenic |
| ACGTTCCCTCATGTCTTCAA+CGG | 0.575016 | 4_1:-1905391 | None:intergenic |
| CCTGTTATTAAGTTTCTTAG+GGG | 0.577517 | 4_1:+1905612 | Msa0528920:CDS |
| ACACTAGCATGCAAAACTTG+TGG | 0.577739 | 4_1:-1905573 | None:intergenic |
| GAGACCTGTAAAAGAGCTTG+TGG | 0.581965 | 4_1:+1906239 | Msa0528920:CDS |
| TAAGGATACTGTGTAACCAT+AGG | 0.587849 | 4_1:-1905771 | None:intergenic |
| CTGCAACCGTTGAAGACATG+AGG | 0.592374 | 4_1:+1905385 | Msa0528920:CDS |
| ACACTACAACCCAAAATCAA+AGG | 0.594517 | 4_1:-1905465 | None:intergenic |
| AGGCAACCCAATATAATCTG+TGG | 0.598668 | 4_1:-1905953 | None:intergenic |
| ACCAGAGGCTTAAGAGCAAG+GGG | 0.605082 | 4_1:+1906313 | Msa0528920:CDS |
| TGGTAGGGCAATACCATCGC+AGG | 0.609868 | 4_1:+1906122 | Msa0528920:CDS |
| TCTGAAACTATATCATTCCC+GGG | 0.612098 | 4_1:-1906462 | None:intergenic |
| GTGGGAAATTAGAGCTACCC+GGG | 0.615038 | 4_1:+1906445 | Msa0528920:CDS |
| AAATCTGCTCCTACTACTGG+AGG | 0.621448 | 4_1:+1905179 | Msa0528920:CDS |
| GGTGGGAAATTAGAGCTACC+CGG | 0.623613 | 4_1:+1906444 | Msa0528920:CDS |
| AGGTACTATGAGTACTTCAG+TGG | 0.624393 | 4_1:+1905707 | Msa0528920:CDS |
| ACCATAGGACCAATATCCCT+AGG | 0.641670 | 4_1:-1905756 | None:intergenic |
| ACTTCTTCAAAAGTGAGATG+GGG | 0.645282 | 4_1:+1906217 | Msa0528920:CDS |
| TGATCCGGAAGGGTTTGCAA+GGG | 0.654444 | 4_1:+1906029 | Msa0528920:CDS |
| GAATGATATAGTTTCAGATG+AGG | 0.656227 | 4_1:+1906467 | Msa0528920:CDS |
| ATACTAGCCACATCCTGCGA+TGG | 0.661576 | 4_1:-1906135 | None:intergenic |
| AAGCTGAAGATTGATCCGGA+AGG | 0.664980 | 4_1:+1906018 | Msa0528920:CDS |
| TGCAACCGTTGAAGACATGA+GGG | 0.665652 | 4_1:+1905386 | Msa0528920:CDS |
| GGTGGAGAAGATGCCACAAG+TGG | 0.668174 | 4_1:+1906053 | Msa0528920:CDS |
| GTTCCAGGACGGTAACGGTG+AGG | 0.678668 | 4_1:-1905212 | None:intergenic |
| GGATACTGAGCAATAACCGA+AGG | 0.679020 | 4_1:-1905932 | None:intergenic |
| GGATTAAACCTAGATACCAG+AGG | 0.689589 | 4_1:+1906298 | Msa0528920:CDS |
| GAAGTGCGACGGTTCCAGGA+CGG | 0.701371 | 4_1:-1905223 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGGATTCATAATTTT+GGG | + | chr4_1:1905296-1905315 | Msa0528920:intron | 15.0% |
| !! | TTAGGTTATTTAGAAAAAAT+TGG | + | chr4_1:1905510-1905529 | Msa0528920:CDS | 15.0% |
| !! | TAGGTTATTTAGAAAAAATT+GGG | + | chr4_1:1905511-1905530 | Msa0528920:CDS | 15.0% |
| !!! | AATTTTGGATTCATAATTTT+GGG | + | chr4_1:1905296-1905315 | Msa0528920:intron | 15.0% |
| !! | TTAGGTTATTTAGAAAAAAT+TGG | + | chr4_1:1905510-1905529 | Msa0528920:CDS | 15.0% |
| !! | TAGGTTATTTAGAAAAAATT+GGG | + | chr4_1:1905511-1905530 | Msa0528920:CDS | 15.0% |
| !! | TCTGAAAACCTAAAAAATTA+GGG | - | chr4_1:1905264-1905283 | None:intergenic | 20.0% |
| !!! | AGAGTTTTGAATTTGAATTT+TGG | + | chr4_1:1905281-1905300 | Msa0528920:intron | 20.0% |
| !!! | GAATTTTGGATTCATAATTT+TGG | + | chr4_1:1905295-1905314 | Msa0528920:intron | 20.0% |
| !!! | ATACTGATTTATATCATCAA+TGG | - | chr4_1:1905445-1905464 | None:intergenic | 20.0% |
| !!! | TTTTCTAAATAACCTAAAAC+AGG | - | chr4_1:1905507-1905526 | None:intergenic | 20.0% |
| !!! | AAAAATATCCTGAACTTTTA+GGG | + | chr4_1:1905673-1905692 | Msa0528920:CDS | 20.0% |
| !! | TCTGAAAACCTAAAAAATTA+GGG | - | chr4_1:1905264-1905283 | None:intergenic | 20.0% |
| !!! | AGAGTTTTGAATTTGAATTT+TGG | + | chr4_1:1905281-1905300 | Msa0528920:intron | 20.0% |
| !!! | GAATTTTGGATTCATAATTT+TGG | + | chr4_1:1905295-1905314 | Msa0528920:intron | 20.0% |
| !!! | ATACTGATTTATATCATCAA+TGG | - | chr4_1:1905445-1905464 | None:intergenic | 20.0% |
| !!! | TTTTCTAAATAACCTAAAAC+AGG | - | chr4_1:1905507-1905526 | None:intergenic | 20.0% |
| !!! | AAAAATATCCTGAACTTTTA+GGG | + | chr4_1:1905673-1905692 | Msa0528920:CDS | 20.0% |
| ! | CTGAAAACCTAAAAAATTAG+GGG | - | chr4_1:1905263-1905282 | None:intergenic | 25.0% |
| !! | CTCTGAAAACCTAAAAAATT+AGG | - | chr4_1:1905265-1905284 | None:intergenic | 25.0% |
| ! | GTTGAGTTTATTCAGAAATT+AGG | + | chr4_1:1905414-1905433 | Msa0528920:CDS | 25.0% |
| !!! | AAATCAGTATCCTTTGATTT+TGG | + | chr4_1:1905455-1905474 | Msa0528920:CDS | 25.0% |
| !!! | AATCAGTATCCTTTGATTTT+GGG | + | chr4_1:1905456-1905475 | Msa0528920:CDS | 25.0% |
| !! | AAAAACATGATTCCTGTTTT+AGG | + | chr4_1:1905492-1905511 | Msa0528920:CDS | 25.0% |
| ! | TAGAAAAAATTGGGATTTCT+AGG | + | chr4_1:1905520-1905539 | Msa0528920:CDS | 25.0% |
| ! | TCCTGTTATTAAGTTTCTTA+GGG | + | chr4_1:1905611-1905630 | Msa0528920:CDS | 25.0% |
| ! | ATGTAGAGAAAGATGATATT+GGG | + | chr4_1:1905640-1905659 | Msa0528920:CDS | 25.0% |
| !! | CAAAAATATCCTGAACTTTT+AGG | + | chr4_1:1905672-1905691 | Msa0528920:CDS | 25.0% |
| !!! | ACACAGTATCCTTATTTTTT+AGG | + | chr4_1:1905780-1905799 | Msa0528920:CDS | 25.0% |
| !!! | CACAGTATCCTTATTTTTTA+GGG | + | chr4_1:1905781-1905800 | Msa0528920:CDS | 25.0% |
| ! | TGATTACTTGGTTATTTACT+TGG | + | chr4_1:1905836-1905855 | Msa0528920:intron | 25.0% |
| ! | CTAATCAAACAATCAACATT+AGG | - | chr4_1:1905887-1905906 | None:intergenic | 25.0% |
| !!! | GTTGATTGTTTGATTAGTTT+TGG | + | chr4_1:1905890-1905909 | Msa0528920:intron | 25.0% |
| ! | TCAAAATGTGATTATGAAAC+CGG | + | chr4_1:1906086-1906105 | Msa0528920:CDS | 25.0% |
| ! | CTGAAAACCTAAAAAATTAG+GGG | - | chr4_1:1905263-1905282 | None:intergenic | 25.0% |
| !! | CTCTGAAAACCTAAAAAATT+AGG | - | chr4_1:1905265-1905284 | None:intergenic | 25.0% |
| ! | GTTGAGTTTATTCAGAAATT+AGG | + | chr4_1:1905414-1905433 | Msa0528920:CDS | 25.0% |
| !!! | AAATCAGTATCCTTTGATTT+TGG | + | chr4_1:1905455-1905474 | Msa0528920:CDS | 25.0% |
| !!! | AATCAGTATCCTTTGATTTT+GGG | + | chr4_1:1905456-1905475 | Msa0528920:CDS | 25.0% |
| !! | AAAAACATGATTCCTGTTTT+AGG | + | chr4_1:1905492-1905511 | Msa0528920:CDS | 25.0% |
| ! | TAGAAAAAATTGGGATTTCT+AGG | + | chr4_1:1905520-1905539 | Msa0528920:CDS | 25.0% |
| ! | TCCTGTTATTAAGTTTCTTA+GGG | + | chr4_1:1905611-1905630 | Msa0528920:CDS | 25.0% |
| ! | ATGTAGAGAAAGATGATATT+GGG | + | chr4_1:1905640-1905659 | Msa0528920:CDS | 25.0% |
| !! | CAAAAATATCCTGAACTTTT+AGG | + | chr4_1:1905672-1905691 | Msa0528920:CDS | 25.0% |
| !!! | ACACAGTATCCTTATTTTTT+AGG | + | chr4_1:1905780-1905799 | Msa0528920:CDS | 25.0% |
| !!! | CACAGTATCCTTATTTTTTA+GGG | + | chr4_1:1905781-1905800 | Msa0528920:CDS | 25.0% |
| ! | TGATTACTTGGTTATTTACT+TGG | + | chr4_1:1905836-1905855 | Msa0528920:intron | 25.0% |
| ! | CTAATCAAACAATCAACATT+AGG | - | chr4_1:1905887-1905906 | None:intergenic | 25.0% |
| !!! | GTTGATTGTTTGATTAGTTT+TGG | + | chr4_1:1905890-1905909 | Msa0528920:intron | 25.0% |
| ! | TCAAAATGTGATTATGAAAC+CGG | + | chr4_1:1906086-1906105 | Msa0528920:CDS | 25.0% |
| ! | TCGTTTTCCCCTAATTTTTT+AGG | + | chr4_1:1905253-1905272 | Msa0528920:intron | 30.0% |
| TATCATCTTCGATTATCTCA+AGG | + | chr4_1:1905320-1905339 | Msa0528920:intron | 30.0% | |
| ATCATCTTCGATTATCTCAA+GGG | + | chr4_1:1905321-1905340 | Msa0528920:intron | 30.0% | |
| CTCCTGTTATTAAGTTTCTT+AGG | + | chr4_1:1905610-1905629 | Msa0528920:CDS | 30.0% | |
| CCTGTTATTAAGTTTCTTAG+GGG | + | chr4_1:1905612-1905631 | Msa0528920:CDS | 30.0% | |
| GATGTAGAGAAAGATGATAT+TGG | + | chr4_1:1905639-1905658 | Msa0528920:CDS | 30.0% | |
| !! | TTAGTATTGGTGTTAATCCT+AGG | + | chr4_1:1905739-1905758 | Msa0528920:CDS | 30.0% |
| !! | TAGTATTGGTGTTAATCCTA+GGG | + | chr4_1:1905740-1905759 | Msa0528920:CDS | 30.0% |
| ACTCTCATCCCTAAAAAATA+AGG | - | chr4_1:1905792-1905811 | None:intergenic | 30.0% | |
| !!! | TATTTTTTAGGGATGAGAGT+TGG | + | chr4_1:1905792-1905811 | Msa0528920:CDS | 30.0% |
| ATAACCAAGTAATCAACAAG+AGG | - | chr4_1:1905831-1905850 | None:intergenic | 30.0% | |
| !!! | GTTTGATTAGTTTTGGTTTG+AGG | + | chr4_1:1905897-1905916 | Msa0528920:intron | 30.0% |
| TCAGTATCCACAGATTATAT+TGG | + | chr4_1:1905946-1905965 | Msa0528920:CDS | 30.0% | |
| CAGTATCCACAGATTATATT+GGG | + | chr4_1:1905947-1905966 | Msa0528920:CDS | 30.0% | |
| TTACTTCTTCAAAAGTGAGA+TGG | + | chr4_1:1906215-1906234 | Msa0528920:CDS | 30.0% | |
| TACTTCTTCAAAAGTGAGAT+GGG | + | chr4_1:1906216-1906235 | Msa0528920:CDS | 30.0% | |
| ! | AAACTATAGGTGAAGTATTC+TGG | - | chr4_1:1906270-1906289 | None:intergenic | 30.0% |
| AGAATACTTCACCTATAGTT+TGG | + | chr4_1:1906269-1906288 | Msa0528920:CDS | 30.0% | |
| AATCCTAGATTCCAAACTAT+AGG | - | chr4_1:1906283-1906302 | None:intergenic | 30.0% | |
| ! | GGATAAAGTGTTCATTGAAT+TGG | + | chr4_1:1906334-1906353 | Msa0528920:CDS | 30.0% |
| ! | TATATCGAAACCGAAAGTAT+AGG | + | chr4_1:1906405-1906424 | Msa0528920:CDS | 30.0% |
| ! | ATCTGAAACTATATCATTCC+CGG | - | chr4_1:1906466-1906485 | None:intergenic | 30.0% |
| GAATGATATAGTTTCAGATG+AGG | + | chr4_1:1906467-1906486 | Msa0528920:CDS | 30.0% | |
| ! | TCGTTTTCCCCTAATTTTTT+AGG | + | chr4_1:1905253-1905272 | Msa0528920:intron | 30.0% |
| TATCATCTTCGATTATCTCA+AGG | + | chr4_1:1905320-1905339 | Msa0528920:intron | 30.0% | |
| ATCATCTTCGATTATCTCAA+GGG | + | chr4_1:1905321-1905340 | Msa0528920:intron | 30.0% | |
| CTCCTGTTATTAAGTTTCTT+AGG | + | chr4_1:1905610-1905629 | Msa0528920:CDS | 30.0% | |
| CCTGTTATTAAGTTTCTTAG+GGG | + | chr4_1:1905612-1905631 | Msa0528920:CDS | 30.0% | |
| GATGTAGAGAAAGATGATAT+TGG | + | chr4_1:1905639-1905658 | Msa0528920:CDS | 30.0% | |
| !! | TTAGTATTGGTGTTAATCCT+AGG | + | chr4_1:1905739-1905758 | Msa0528920:CDS | 30.0% |
| !! | TAGTATTGGTGTTAATCCTA+GGG | + | chr4_1:1905740-1905759 | Msa0528920:CDS | 30.0% |
| ACTCTCATCCCTAAAAAATA+AGG | - | chr4_1:1905792-1905811 | None:intergenic | 30.0% | |
| !!! | TATTTTTTAGGGATGAGAGT+TGG | + | chr4_1:1905792-1905811 | Msa0528920:CDS | 30.0% |
| ATAACCAAGTAATCAACAAG+AGG | - | chr4_1:1905831-1905850 | None:intergenic | 30.0% | |
| !!! | GTTTGATTAGTTTTGGTTTG+AGG | + | chr4_1:1905897-1905916 | Msa0528920:intron | 30.0% |
| TCAGTATCCACAGATTATAT+TGG | + | chr4_1:1905946-1905965 | Msa0528920:CDS | 30.0% | |
| CAGTATCCACAGATTATATT+GGG | + | chr4_1:1905947-1905966 | Msa0528920:CDS | 30.0% | |
| TTACTTCTTCAAAAGTGAGA+TGG | + | chr4_1:1906215-1906234 | Msa0528920:CDS | 30.0% | |
| TACTTCTTCAAAAGTGAGAT+GGG | + | chr4_1:1906216-1906235 | Msa0528920:CDS | 30.0% | |
| ! | AAACTATAGGTGAAGTATTC+TGG | - | chr4_1:1906270-1906289 | None:intergenic | 30.0% |
| AGAATACTTCACCTATAGTT+TGG | + | chr4_1:1906269-1906288 | Msa0528920:CDS | 30.0% | |
| AATCCTAGATTCCAAACTAT+AGG | - | chr4_1:1906283-1906302 | None:intergenic | 30.0% | |
| ! | GGATAAAGTGTTCATTGAAT+TGG | + | chr4_1:1906334-1906353 | Msa0528920:CDS | 30.0% |
| ! | TATATCGAAACCGAAAGTAT+AGG | + | chr4_1:1906405-1906424 | Msa0528920:CDS | 30.0% |
| ! | ATCTGAAACTATATCATTCC+CGG | - | chr4_1:1906466-1906485 | None:intergenic | 30.0% |
| GAATGATATAGTTTCAGATG+AGG | + | chr4_1:1906467-1906486 | Msa0528920:CDS | 30.0% | |
| TTCGATTATCTCAAGGGTTT+GGG | + | chr4_1:1905327-1905346 | Msa0528920:intron | 35.0% | |
| AATTATCCCTGATGAATTGC+AGG | + | chr4_1:1905350-1905369 | Msa0528920:intron | 35.0% | |
| ACACTACAACCCAAAATCAA+AGG | - | chr4_1:1905468-1905487 | None:intergenic | 35.0% | |
| CCCCTAAGAAACTTAATAAC+AGG | - | chr4_1:1905615-1905634 | None:intergenic | 35.0% | |
| AGCTTAAACCCTAAAAGTTC+AGG | - | chr4_1:1905684-1905703 | None:intergenic | 35.0% | |
| !!! | CTTTTAGGGTTTAAGCTTGA+AGG | + | chr4_1:1905687-1905706 | Msa0528920:CDS | 35.0% |
| GTGGCTTATCTTGTTAGTAT+TGG | + | chr4_1:1905726-1905745 | Msa0528920:CDS | 35.0% | |
| TAAGGATACTGTGTAACCAT+AGG | - | chr4_1:1905774-1905793 | None:intergenic | 35.0% | |
| ! | AAAGCCTCTTGTTGATTACT+TGG | + | chr4_1:1905824-1905843 | Msa0528920:intron | 35.0% |
| !!! | GATTAGTTTTGGTTTGAGGA+AGG | + | chr4_1:1905901-1905920 | Msa0528920:intron | 35.0% |
| ! | TTATATTGGGTTGCCTCTTA+AGG | + | chr4_1:1905960-1905979 | Msa0528920:CDS | 35.0% |
| !! | GAAGACAATTTAGCCTTAAG+AGG | - | chr4_1:1905976-1905995 | None:intergenic | 35.0% |
| ! | TTTGAAGCTGAAGATTGATC+CGG | + | chr4_1:1906014-1906033 | Msa0528920:CDS | 35.0% |
| ! | AAACCGGTTGAGTTTTTACT+TGG | + | chr4_1:1906102-1906121 | Msa0528920:CDS | 35.0% |
| CTACCAAGTAAAAACTCAAC+CGG | - | chr4_1:1906108-1906127 | None:intergenic | 35.0% | |
| ! | GGTTGAGTTTTTACTTGGTA+GGG | + | chr4_1:1906107-1906126 | Msa0528920:CDS | 35.0% |
| ACTTCTTCAAAAGTGAGATG+GGG | + | chr4_1:1906217-1906236 | Msa0528920:CDS | 35.0% | |
| ! | TCACCTATAGTTTGGAATCT+AGG | + | chr4_1:1906277-1906296 | Msa0528920:CDS | 35.0% |
| AGATTTGAAGAGAGATTGCA+GGG | + | chr4_1:1906378-1906397 | Msa0528920:CDS | 35.0% | |
| GAATGAAGGACCTATACTTT+CGG | - | chr4_1:1906418-1906437 | None:intergenic | 35.0% | |
| ATAGGTCCTTCATTCTGTAT+TGG | + | chr4_1:1906423-1906442 | Msa0528920:CDS | 35.0% | |
| ! | TCTGAAACTATATCATTCCC+GGG | - | chr4_1:1906465-1906484 | None:intergenic | 35.0% |
| TATAGTTTCAGATGAGGAAG+AGG | + | chr4_1:1906473-1906492 | Msa0528920:CDS | 35.0% | |
| ! | CAGAAGAACTGTTTCTCTTT+AGG | + | chr4_1:1906518-1906537 | Msa0528920:CDS | 35.0% |
| TTCGATTATCTCAAGGGTTT+GGG | + | chr4_1:1905327-1905346 | Msa0528920:intron | 35.0% | |
| AATTATCCCTGATGAATTGC+AGG | + | chr4_1:1905350-1905369 | Msa0528920:intron | 35.0% | |
| ACACTACAACCCAAAATCAA+AGG | - | chr4_1:1905468-1905487 | None:intergenic | 35.0% | |
| CCCCTAAGAAACTTAATAAC+AGG | - | chr4_1:1905615-1905634 | None:intergenic | 35.0% | |
| AGCTTAAACCCTAAAAGTTC+AGG | - | chr4_1:1905684-1905703 | None:intergenic | 35.0% | |
| !!! | CTTTTAGGGTTTAAGCTTGA+AGG | + | chr4_1:1905687-1905706 | Msa0528920:CDS | 35.0% |
| GTGGCTTATCTTGTTAGTAT+TGG | + | chr4_1:1905726-1905745 | Msa0528920:CDS | 35.0% | |
| TAAGGATACTGTGTAACCAT+AGG | - | chr4_1:1905774-1905793 | None:intergenic | 35.0% | |
| ! | AAAGCCTCTTGTTGATTACT+TGG | + | chr4_1:1905824-1905843 | Msa0528920:intron | 35.0% |
| !!! | GATTAGTTTTGGTTTGAGGA+AGG | + | chr4_1:1905901-1905920 | Msa0528920:intron | 35.0% |
| ! | TTATATTGGGTTGCCTCTTA+AGG | + | chr4_1:1905960-1905979 | Msa0528920:CDS | 35.0% |
| !! | GAAGACAATTTAGCCTTAAG+AGG | - | chr4_1:1905976-1905995 | None:intergenic | 35.0% |
| ! | TTTGAAGCTGAAGATTGATC+CGG | + | chr4_1:1906014-1906033 | Msa0528920:CDS | 35.0% |
| ! | AAACCGGTTGAGTTTTTACT+TGG | + | chr4_1:1906102-1906121 | Msa0528920:CDS | 35.0% |
| CTACCAAGTAAAAACTCAAC+CGG | - | chr4_1:1906108-1906127 | None:intergenic | 35.0% | |
| ! | GGTTGAGTTTTTACTTGGTA+GGG | + | chr4_1:1906107-1906126 | Msa0528920:CDS | 35.0% |
| ACTTCTTCAAAAGTGAGATG+GGG | + | chr4_1:1906217-1906236 | Msa0528920:CDS | 35.0% | |
| ! | TCACCTATAGTTTGGAATCT+AGG | + | chr4_1:1906277-1906296 | Msa0528920:CDS | 35.0% |
| AGATTTGAAGAGAGATTGCA+GGG | + | chr4_1:1906378-1906397 | Msa0528920:CDS | 35.0% | |
| GAATGAAGGACCTATACTTT+CGG | - | chr4_1:1906418-1906437 | None:intergenic | 35.0% | |
| ATAGGTCCTTCATTCTGTAT+TGG | + | chr4_1:1906423-1906442 | Msa0528920:CDS | 35.0% | |
| ! | TCTGAAACTATATCATTCCC+GGG | - | chr4_1:1906465-1906484 | None:intergenic | 35.0% |
| TATAGTTTCAGATGAGGAAG+AGG | + | chr4_1:1906473-1906492 | Msa0528920:CDS | 35.0% | |
| !! | TTTTTGACTCCTCCAGTAGT+AGG | - | chr4_1:1905191-1905210 | None:intergenic | 40.0% |
| CTTCGATTATCTCAAGGGTT+TGG | + | chr4_1:1905326-1905345 | Msa0528920:intron | 40.0% | |
| CCAAATCCTGCAATTCATCA+GGG | - | chr4_1:1905359-1905378 | None:intergenic | 40.0% | |
| TCCAAATCCTGCAATTCATC+AGG | - | chr4_1:1905360-1905379 | None:intergenic | 40.0% | |
| ! | GGGATTTCTAGGTCTAAACT+TGG | + | chr4_1:1905531-1905550 | Msa0528920:CDS | 40.0% |
| ACACTAGCATGCAAAACTTG+TGG | - | chr4_1:1905576-1905595 | None:intergenic | 40.0% | |
| AGGTACTATGAGTACTTCAG+TGG | + | chr4_1:1905707-1905726 | Msa0528920:CDS | 40.0% | |
| GGTGTTAATCCTAGGGATAT+TGG | + | chr4_1:1905747-1905766 | Msa0528920:CDS | 40.0% | |
| AGGCAACCCAATATAATCTG+TGG | - | chr4_1:1905956-1905975 | None:intergenic | 40.0% | |
| TGATGAAGACTAACCACTTG+TGG | - | chr4_1:1906069-1906088 | None:intergenic | 40.0% | |
| ! | CGGTTGAGTTTTTACTTGGT+AGG | + | chr4_1:1906106-1906125 | Msa0528920:CDS | 40.0% |
| ! | AACTCCACAAGCTCTTTTAC+AGG | - | chr4_1:1906246-1906265 | None:intergenic | 40.0% |
| GGATTAAACCTAGATACCAG+AGG | + | chr4_1:1906298-1906317 | Msa0528920:CDS | 40.0% | |
| GCAATCTCTCTTCAAATCTC+TGG | - | chr4_1:1906377-1906396 | None:intergenic | 40.0% | |
| GAGATTTGAAGAGAGATTGC+AGG | + | chr4_1:1906377-1906396 | Msa0528920:CDS | 40.0% | |
| ! | GTCCTTCATTCTGTATTGGT+GGG | + | chr4_1:1906427-1906446 | Msa0528920:CDS | 40.0% |
| TTCCCACCAATACAGAATGA+AGG | - | chr4_1:1906432-1906451 | None:intergenic | 40.0% | |
| !! | TTTTTGACTCCTCCAGTAGT+AGG | - | chr4_1:1905191-1905210 | None:intergenic | 40.0% |
| CTTCGATTATCTCAAGGGTT+TGG | + | chr4_1:1905326-1905345 | Msa0528920:intron | 40.0% | |
| CCAAATCCTGCAATTCATCA+GGG | - | chr4_1:1905359-1905378 | None:intergenic | 40.0% | |
| TCCAAATCCTGCAATTCATC+AGG | - | chr4_1:1905360-1905379 | None:intergenic | 40.0% | |
| ! | GGGATTTCTAGGTCTAAACT+TGG | + | chr4_1:1905531-1905550 | Msa0528920:CDS | 40.0% |
| ACACTAGCATGCAAAACTTG+TGG | - | chr4_1:1905576-1905595 | None:intergenic | 40.0% | |
| AGGTACTATGAGTACTTCAG+TGG | + | chr4_1:1905707-1905726 | Msa0528920:CDS | 40.0% | |
| GGTGTTAATCCTAGGGATAT+TGG | + | chr4_1:1905747-1905766 | Msa0528920:CDS | 40.0% | |
| AGGCAACCCAATATAATCTG+TGG | - | chr4_1:1905956-1905975 | None:intergenic | 40.0% | |
| TGATGAAGACTAACCACTTG+TGG | - | chr4_1:1906069-1906088 | None:intergenic | 40.0% | |
| ! | CGGTTGAGTTTTTACTTGGT+AGG | + | chr4_1:1906106-1906125 | Msa0528920:CDS | 40.0% |
| ! | AACTCCACAAGCTCTTTTAC+AGG | - | chr4_1:1906246-1906265 | None:intergenic | 40.0% |
| GGATTAAACCTAGATACCAG+AGG | + | chr4_1:1906298-1906317 | Msa0528920:CDS | 40.0% | |
| GCAATCTCTCTTCAAATCTC+TGG | - | chr4_1:1906377-1906396 | None:intergenic | 40.0% | |
| GAGATTTGAAGAGAGATTGC+AGG | + | chr4_1:1906377-1906396 | Msa0528920:CDS | 40.0% | |
| ! | GTCCTTCATTCTGTATTGGT+GGG | + | chr4_1:1906427-1906446 | Msa0528920:CDS | 40.0% |
| TTCCCACCAATACAGAATGA+AGG | - | chr4_1:1906432-1906451 | None:intergenic | 40.0% | |
| AGGAAATCTGCTCCTACTAC+TGG | + | chr4_1:1905176-1905195 | Msa0528920:CDS | 45.0% | |
| AAATCTGCTCCTACTACTGG+AGG | + | chr4_1:1905179-1905198 | Msa0528920:CDS | 45.0% | |
| ACGAAATTACCGAAGTGCGA+CGG | - | chr4_1:1905237-1905256 | None:intergenic | 45.0% | |
| CCCTGATGAATTGCAGGATT+TGG | + | chr4_1:1905356-1905375 | Msa0528920:intron | 45.0% | |
| TGCAACCGTTGAAGACATGA+GGG | + | chr4_1:1905386-1905405 | Msa0528920:CDS | 45.0% | |
| ACGTTCCCTCATGTCTTCAA+CGG | - | chr4_1:1905394-1905413 | None:intergenic | 45.0% | |
| TCCTAGGGATATTGGTCCTA+TGG | + | chr4_1:1905755-1905774 | Msa0528920:CDS | 45.0% | |
| ACCATAGGACCAATATCCCT+AGG | - | chr4_1:1905759-1905778 | None:intergenic | 45.0% | |
| GAGGAAGGAATGTTTGCCTT+CGG | + | chr4_1:1905916-1905935 | Msa0528920:intron | 45.0% | |
| GGATACTGAGCAATAACCGA+AGG | - | chr4_1:1905935-1905954 | None:intergenic | 45.0% | |
| AAGCTGAAGATTGATCCGGA+AGG | + | chr4_1:1906018-1906037 | Msa0528920:CDS | 45.0% | |
| AGCTGAAGATTGATCCGGAA+GGG | + | chr4_1:1906019-1906038 | Msa0528920:CDS | 45.0% | |
| GGTGATCAAGTGTCCTCAAT+TGG | + | chr4_1:1906158-1906177 | Msa0528920:CDS | 45.0% | |
| GAGACCTGTAAAAGAGCTTG+TGG | + | chr4_1:1906239-1906258 | Msa0528920:CDS | 45.0% | |
| CTCTTAAGCCTCTGGTATCT+AGG | - | chr4_1:1906309-1906328 | None:intergenic | 45.0% | |
| ATACCAGAGGCTTAAGAGCA+AGG | + | chr4_1:1906311-1906330 | Msa0528920:CDS | 45.0% | |
| TACCAGAGGCTTAAGAGCAA+GGG | + | chr4_1:1906312-1906331 | Msa0528920:CDS | 45.0% | |
| GGTCCTTCATTCTGTATTGG+TGG | + | chr4_1:1906426-1906445 | Msa0528920:CDS | 45.0% | |
| AGGAAATCTGCTCCTACTAC+TGG | + | chr4_1:1905176-1905195 | Msa0528920:CDS | 45.0% | |
| AAATCTGCTCCTACTACTGG+AGG | + | chr4_1:1905179-1905198 | Msa0528920:CDS | 45.0% | |
| ACGAAATTACCGAAGTGCGA+CGG | - | chr4_1:1905237-1905256 | None:intergenic | 45.0% | |
| CCCTGATGAATTGCAGGATT+TGG | + | chr4_1:1905356-1905375 | Msa0528920:intron | 45.0% | |
| TGCAACCGTTGAAGACATGA+GGG | + | chr4_1:1905386-1905405 | Msa0528920:CDS | 45.0% | |
| ACGTTCCCTCATGTCTTCAA+CGG | - | chr4_1:1905394-1905413 | None:intergenic | 45.0% | |
| TCCTAGGGATATTGGTCCTA+TGG | + | chr4_1:1905755-1905774 | Msa0528920:CDS | 45.0% | |
| ACCATAGGACCAATATCCCT+AGG | - | chr4_1:1905759-1905778 | None:intergenic | 45.0% | |
| GAGGAAGGAATGTTTGCCTT+CGG | + | chr4_1:1905916-1905935 | Msa0528920:intron | 45.0% | |
| GGATACTGAGCAATAACCGA+AGG | - | chr4_1:1905935-1905954 | None:intergenic | 45.0% | |
| AAGCTGAAGATTGATCCGGA+AGG | + | chr4_1:1906018-1906037 | Msa0528920:CDS | 45.0% | |
| AGCTGAAGATTGATCCGGAA+GGG | + | chr4_1:1906019-1906038 | Msa0528920:CDS | 45.0% | |
| GGTGATCAAGTGTCCTCAAT+TGG | + | chr4_1:1906158-1906177 | Msa0528920:CDS | 45.0% | |
| GAGACCTGTAAAAGAGCTTG+TGG | + | chr4_1:1906239-1906258 | Msa0528920:CDS | 45.0% | |
| CTCTTAAGCCTCTGGTATCT+AGG | - | chr4_1:1906309-1906328 | None:intergenic | 45.0% | |
| ATACCAGAGGCTTAAGAGCA+AGG | + | chr4_1:1906311-1906330 | Msa0528920:CDS | 45.0% | |
| TACCAGAGGCTTAAGAGCAA+GGG | + | chr4_1:1906312-1906331 | Msa0528920:CDS | 45.0% | |
| GGTCCTTCATTCTGTATTGG+TGG | + | chr4_1:1906426-1906445 | Msa0528920:CDS | 45.0% | |
| CTCATGTCTTCAACGGTTGC+AGG | - | chr4_1:1905387-1905406 | None:intergenic | 50.0% | |
| CTGCAACCGTTGAAGACATG+AGG | + | chr4_1:1905385-1905404 | Msa0528920:CDS | 50.0% | |
| TTGATCCGGAAGGGTTTGCA+AGG | + | chr4_1:1906028-1906047 | Msa0528920:CDS | 50.0% | |
| TGATCCGGAAGGGTTTGCAA+GGG | + | chr4_1:1906029-1906048 | Msa0528920:CDS | 50.0% | |
| ATACTAGCCACATCCTGCGA+TGG | - | chr4_1:1906138-1906157 | None:intergenic | 50.0% | |
| ATCGCAGGATGTGGCTAGTA+TGG | + | chr4_1:1906137-1906156 | Msa0528920:CDS | 50.0% | |
| ACCAGAGGCTTAAGAGCAAG+GGG | + | chr4_1:1906313-1906332 | Msa0528920:CDS | 50.0% | |
| GGTGGGAAATTAGAGCTACC+CGG | + | chr4_1:1906444-1906463 | Msa0528920:CDS | 50.0% | |
| GTGGGAAATTAGAGCTACCC+GGG | + | chr4_1:1906445-1906464 | Msa0528920:CDS | 50.0% | |
| CTCATGTCTTCAACGGTTGC+AGG | - | chr4_1:1905387-1905406 | None:intergenic | 50.0% | |
| CTGCAACCGTTGAAGACATG+AGG | + | chr4_1:1905385-1905404 | Msa0528920:CDS | 50.0% | |
| TTGATCCGGAAGGGTTTGCA+AGG | + | chr4_1:1906028-1906047 | Msa0528920:CDS | 50.0% | |
| TGATCCGGAAGGGTTTGCAA+GGG | + | chr4_1:1906029-1906048 | Msa0528920:CDS | 50.0% | |
| ATACTAGCCACATCCTGCGA+TGG | - | chr4_1:1906138-1906157 | None:intergenic | 50.0% | |
| ATCGCAGGATGTGGCTAGTA+TGG | + | chr4_1:1906137-1906156 | Msa0528920:CDS | 50.0% | |
| ACCAGAGGCTTAAGAGCAAG+GGG | + | chr4_1:1906313-1906332 | Msa0528920:CDS | 50.0% | |
| GGTGGGAAATTAGAGCTACC+CGG | + | chr4_1:1906444-1906463 | Msa0528920:CDS | 50.0% | |
| GTGGGAAATTAGAGCTACCC+GGG | + | chr4_1:1906445-1906464 | Msa0528920:CDS | 50.0% | |
| AAACCTCACCGTTACCGTCC+TGG | + | chr4_1:1905209-1905228 | Msa0528920:CDS | 55.0% | |
| ACCACCCTTGCAAACCCTTC+CGG | - | chr4_1:1906036-1906055 | None:intergenic | 55.0% | |
| GGTGGAGAAGATGCCACAAG+TGG | + | chr4_1:1906053-1906072 | Msa0528920:CDS | 55.0% | |
| TGGTAGGGCAATACCATCGC+AGG | + | chr4_1:1906122-1906141 | Msa0528920:CDS | 55.0% | |
| GGCAATACCATCGCAGGATG+TGG | + | chr4_1:1906128-1906147 | Msa0528920:CDS | 55.0% | |
| ACTCGCAGCGCAACCAATTG+AGG | - | chr4_1:1906174-1906193 | None:intergenic | 55.0% | |
| TCCCCTTGCTCTTAAGCCTC+TGG | - | chr4_1:1906317-1906336 | None:intergenic | 55.0% | |
| AAACCTCACCGTTACCGTCC+TGG | + | chr4_1:1905209-1905228 | Msa0528920:CDS | 55.0% | |
| ACCACCCTTGCAAACCCTTC+CGG | - | chr4_1:1906036-1906055 | None:intergenic | 55.0% | |
| GGTGGAGAAGATGCCACAAG+TGG | + | chr4_1:1906053-1906072 | Msa0528920:CDS | 55.0% | |
| TGGTAGGGCAATACCATCGC+AGG | + | chr4_1:1906122-1906141 | Msa0528920:CDS | 55.0% | |
| GGCAATACCATCGCAGGATG+TGG | + | chr4_1:1906128-1906147 | Msa0528920:CDS | 55.0% | |
| ACTCGCAGCGCAACCAATTG+AGG | - | chr4_1:1906174-1906193 | None:intergenic | 55.0% | |
| TCCCCTTGCTCTTAAGCCTC+TGG | - | chr4_1:1906317-1906336 | None:intergenic | 55.0% | |
| ! | GTTCCAGGACGGTAACGGTG+AGG | - | chr4_1:1905215-1905234 | None:intergenic | 60.0% |
| CGACGGTTCCAGGACGGTAA+CGG | - | chr4_1:1905220-1905239 | None:intergenic | 60.0% | |
| GAAGTGCGACGGTTCCAGGA+CGG | - | chr4_1:1905226-1905245 | None:intergenic | 60.0% | |
| GTCCTGGAACCGTCGCACTT+CGG | + | chr4_1:1905225-1905244 | Msa0528920:intron | 60.0% | |
| TACCGAAGTGCGACGGTTCC+AGG | - | chr4_1:1905230-1905249 | None:intergenic | 60.0% | |
| TCCGGAAGGGTTTGCAAGGG+TGG | + | chr4_1:1906032-1906051 | Msa0528920:CDS | 60.0% | |
| GGAAGGGTTTGCAAGGGTGG+TGG | + | chr4_1:1906035-1906054 | Msa0528920:CDS | 60.0% | |
| ! | GTTCCAGGACGGTAACGGTG+AGG | - | chr4_1:1905215-1905234 | None:intergenic | 60.0% |
| CGACGGTTCCAGGACGGTAA+CGG | - | chr4_1:1905220-1905239 | None:intergenic | 60.0% | |
| GAAGTGCGACGGTTCCAGGA+CGG | - | chr4_1:1905226-1905245 | None:intergenic | 60.0% | |
| GTCCTGGAACCGTCGCACTT+CGG | + | chr4_1:1905225-1905244 | Msa0528920:intron | 60.0% | |
| TACCGAAGTGCGACGGTTCC+AGG | - | chr4_1:1905230-1905249 | None:intergenic | 60.0% | |
| TCCGGAAGGGTTTGCAAGGG+TGG | + | chr4_1:1906032-1906051 | Msa0528920:CDS | 60.0% | |
| GGAAGGGTTTGCAAGGGTGG+TGG | + | chr4_1:1906035-1906054 | Msa0528920:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 1905170 | 1906539 | 1905170 | ID=Msa0528920;Name=Msa0528920 |
| chr4_1 | mRNA | 1905170 | 1906539 | 1905170 | ID=Msa0528920-mRNA-1;Parent=Msa0528920;Name=Msa0528920-mRNA-1;_AED=0.10;_eAED=0.13;_QI=0|0|0|0.66|1|0.66|3|0|374 |
| chr4_1 | exon | 1905170 | 1905235 | 1905170 | ID=Msa0528920-mRNA-1:exon:591;Parent=Msa0528920-mRNA-1 |
| chr4_1 | exon | 1905372 | 1905813 | 1905372 | ID=Msa0528920-mRNA-1:exon:592;Parent=Msa0528920-mRNA-1 |
| chr4_1 | exon | 1905923 | 1906539 | 1905923 | ID=Msa0528920-mRNA-1:exon:593;Parent=Msa0528920-mRNA-1 |
| chr4_1 | CDS | 1905170 | 1905235 | 1905170 | ID=Msa0528920-mRNA-1:cds;Parent=Msa0528920-mRNA-1 |
| chr4_1 | CDS | 1905372 | 1905813 | 1905372 | ID=Msa0528920-mRNA-1:cds;Parent=Msa0528920-mRNA-1 |
| chr4_1 | CDS | 1905923 | 1906539 | 1905923 | ID=Msa0528920-mRNA-1:cds;Parent=Msa0528920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
