AlfalfaGEDB | Msa0529410

M. sativa cultivar zhongmu-4 / Msa0529410

KEGG: K00036
GO: GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0529410	KAG1330954.1	57.542	179	62	4	21	197	40	206	1.22e-55	186

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0529410	sp\|Q9FY99\|G6PD2_ARATH	56.522	184	62	5	19	196	200	371	1.07e-52	181

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0529410	H9CIJ1	61.350	163	49	4	36	196	35	185	7.49e-53	178

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TFs/TRs:

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Gene ID	Type	Classification
Msa0529410	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0529410	MtrunA17_Chr7g0222441	57.303	178	63	3	21	196	204	370	1.11e-55	186
Msa0529410	MtrunA17_Chr8g0358431	85.870	92	13	0	105	196	56	147	1.25e-51	165
Msa0529410	MtrunA17_Chr8g0356771	86.667	90	12	0	107	196	72	161	4.09e-51	162
Msa0529410	MtrunA17_Chr8g0341321	53.030	198	75	6	4	196	173	357	1.14e-50	172
Msa0529410	MtrunA17_Chr7g0228611	53.285	137	55	1	60	196	173	300	1.08e-38	139
Msa0529410	MtrunA17_Chr6g0458971	51.449	138	58	1	59	196	175	303	1.79e-36	133
Msa0529410	MtrunA17_Chr7g0271531	45.062	162	70	4	35	196	247	389	7.04e-35	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0529410	AT5G13110.1	56.522	184	62	5	19	196	200	371	1.09e-53	181
Msa0529410	AT1G24280.1	58.382	173	58	4	26	196	214	374	6.44e-53	179
Msa0529410	AT5G35790.1	54.054	185	67	5	18	196	180	352	2.91e-50	171
Msa0529410	AT5G40760.2	51.408	142	60	1	60	201	173	305	4.33e-38	138
Msa0529410	AT5G40760.1	51.408	142	60	1	60	201	173	305	4.33e-38	138
Msa0529410	AT3G27300.1	51.408	142	60	1	60	201	174	306	4.37e-38	138
Msa0529410	AT3G27300.3	51.408	142	60	1	60	201	174	306	4.37e-38	138
Msa0529410	AT3G27300.2	51.408	142	60	1	60	201	174	306	4.37e-38	138
Msa0529410	AT3G27300.5	51.408	142	60	1	60	201	228	360	6.29e-38	138
Msa0529410	AT3G27300.4	51.408	142	60	1	60	201	245	377	7.45e-38	138

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Find 54 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATACTAGCCCTCTTTGCAA+TGG	0.520791	4_1:+2945911	Msa0529410:CDS
AATGGAAACCCCTGTTAGTT+TGG	0.405110	4_1:+2945929	Msa0529410:CDS
ACTTCATAGATAATGCAAGA+TGG	0.584523	4_1:+2946447	Msa0529410:three_prime_UTR
AGAAATGAAAAGGTCTCATA+TGG	0.448571	4_1:+2945966	Msa0529410:CDS
AGAGGACATTAGAAATGAAA+AGG	0.504615	4_1:+2945956	Msa0529410:CDS
AGATAATGCAAGATGGGATG+GGG	0.599941	4_1:+2946454	Msa0529410:three_prime_UTR
AGCAATATGGTGAAAGAAAA+TGG	0.245087	4_1:+2945115	Msa0529410:CDS
AGCTGAGAAGTTAGAAGGAA+GGG	0.452156	4_1:+2945146	Msa0529410:CDS
AGGGGTTTCCATTGCAAAGA+GGG	0.484242	4_1:-2945919	None:intergenic
ATAAGGTTGGTGAAGCAATA+TGG	0.490665	4_1:+2945102	Msa0529410:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCCAACATAGTGAATAAAA+AGG	+	chr4_1:2944635-2944654	Msa0529410:intron	30.0%
TTAAAGGAAACTGATAAGGT+TGG	+	chr4_1:2945089-2945108	Msa0529410:intron	30.0%
AGCAATATGGTGAAAGAAAA+TGG	+	chr4_1:2945115-2945134	Msa0529410:CDS	30.0%
GCAATATGGTGAAAGAAAAT+GGG	+	chr4_1:2945116-2945135	Msa0529410:CDS	30.0%
AAACCTGAAAATTTGATCCT+CGG	-	chr4_1:2945252-2945271	None:intergenic	30.0%
TAATTAGACCATGTTTGGAT+TGG	-	chr4_1:2945544-2945563	None:intergenic	30.0%
ACAGATAATTAGACCATGTT+TGG	-	chr4_1:2945549-2945568	None:intergenic	30.0%
TGTAGGTACTTTGACAATTA+TGG	+	chr4_1:2945852-2945871	Msa0529410:intron	30.0%
AGAGGACATTAGAAATGAAA+AGG	+	chr4_1:2945956-2945975	Msa0529410:CDS	30.0%
AGAAATGAAAAGGTCTCATA+TGG	+	chr4_1:2945966-2945985	Msa0529410:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	2944315	2946515	2944315	ID=Msa0529410;Name=Msa0529410
chr4_1	mRNA	2944315	2946515	2944315	ID=Msa0529410-mRNA-1;Parent=Msa0529410;Name=Msa0529410-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0\|0\|0.14\|0.71\|0.33\|0.57\|7\|194\|208
chr4_1	exon	2944315	2944424	2944315	ID=Msa0529410-mRNA-1:exon:816;Parent=Msa0529410-mRNA-1
chr4_1	exon	2944803	2944867	2944803	ID=Msa0529410-mRNA-1:exon:817;Parent=Msa0529410-mRNA-1
chr4_1	exon	2944947	2945001	2944947	ID=Msa0529410-mRNA-1:exon:818;Parent=Msa0529410-mRNA-1
chr4_1	exon	2945095	2945178	2945095	ID=Msa0529410-mRNA-1:exon:819;Parent=Msa0529410-mRNA-1
chr4_1	exon	2945620	2945769	2945620	ID=Msa0529410-mRNA-1:exon:820;Parent=Msa0529410-mRNA-1
chr4_1	exon	2945857	2945987	2945857	ID=Msa0529410-mRNA-1:exon:821;Parent=Msa0529410-mRNA-1
chr4_1	exon	2946290	2946515	2946290	ID=Msa0529410-mRNA-1:exon:822;Parent=Msa0529410-mRNA-1
chr4_1	CDS	2944315	2944424	2944315	ID=Msa0529410-mRNA-1:cds;Parent=Msa0529410-mRNA-1
chr4_1	CDS	2944803	2944867	2944803	ID=Msa0529410-mRNA-1:cds;Parent=Msa0529410-mRNA-1
chr4_1	CDS	2944947	2945001	2944947	ID=Msa0529410-mRNA-1:cds;Parent=Msa0529410-mRNA-1
chr4_1	CDS	2945095	2945178	2945095	ID=Msa0529410-mRNA-1:cds;Parent=Msa0529410-mRNA-1
chr4_1	CDS	2945620	2945769	2945620	ID=Msa0529410-mRNA-1:cds;Parent=Msa0529410-mRNA-1
chr4_1	CDS	2945857	2945987	2945857	ID=Msa0529410-mRNA-1:cds;Parent=Msa0529410-mRNA-1
chr4_1	CDS	2946290	2946321	2946290	ID=Msa0529410-mRNA-1:cds;Parent=Msa0529410-mRNA-1
chr4_1	three_prime_UTR	2946322	2946515	2946322	ID=Msa0529410-mRNA-1:three_prime_utr;Parent=Msa0529410-mRNA-1

Gene Sequence

>Msa0529410

TTTATGGACTGCTGTGCTGGAATTGGTTTCTACAGATCAGTTTTAGTGTTAGATTTTTCTGAAATTGATTACTTTGAATTTGGATATGGGACCAAATTCATTGTCTTCGTGGATGTTGGCAGTAATATCGCATTGAAAATTCTGAAGCGTGTAGAAAAAGGTTGGGGTCAAGGAAATGGTTATTGGTTTGTTTTGTTGTTTGATTGTGGTTTTGGATACACTTTGATCATGAAACTGATAAGGTTGGTGAAGCAATATGGTGAAAGAAAATGGGCTCAAATAGCTGAGAAGTTAGAAGGAAGGGTTGGCAAGCAGATCGATCACTATCTTGGAAAAGAGCTTGTGGAAAATCTTTTTGTTCTCCGATTCTCAAATCTAATTTTTGAACCTTTGTGGTCGTGGCAATACATAAAAAATGTACAGTTGATATTCTCAGAAGATTTTGGTACTGAAGGACGTGGCAGGTACTTTGACAATTATGGTATAATTAGACATATTATGCAGAATCATCTACTTCAAATACTAGCCCTCTTTGCAATGGAAACCCCTGTTAGTTTGGATGTAGAGGACATTAGAAATGAAAAGGTCTCATATGGTCAAGGTTCTTCGTTCTATGAGACCGATTAA

Protein sequence

>Msa0529410

FMDCCAGIGFYRSVLVLDFSEIDYFEFGYGTKFIVFVDVGSNIALKILKRVEKGWGQGNGYWFVLLFDCGFGYTLIMKLIRLVKQYGERKWAQIAEKLEGRVGKQIDHYLGKELVENLFVLRFSNLIFEPLWSWQYIKNVQLIFSEDFGTEGRGRYFDNYGIIRHIMQNHLLQILALFAMETPVSLDVEDIRNEKVSYGQGSSFYETD*