Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531360 | XP_013454752.1 | 96.575 | 292 | 8 | 2 | 1 | 291 | 1 | 291 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531360 | sp|Q9S7T5|OFP14_ARATH | 35.577 | 312 | 147 | 10 | 1 | 280 | 1 | 290 | 2.63e-40 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531360 | A0A072UI43 | 96.575 | 292 | 8 | 2 | 1 | 291 | 1 | 291 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0531360 | TF | OFP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531360 | MtrunA17_Chr4g0004341 | 96.575 | 292 | 8 | 2 | 1 | 291 | 1 | 291 | 0.0 | 563 |
| Msa0531360 | MtrunA17_Chr2g0331871 | 49.057 | 318 | 127 | 9 | 1 | 290 | 1 | 311 | 1.85e-84 | 256 |
| Msa0531360 | MtrunA17_Chr1g0185481 | 56.061 | 66 | 26 | 2 | 186 | 249 | 199 | 263 | 2.25e-15 | 74.3 |
| Msa0531360 | MtrunA17_Chr7g0259991 | 47.826 | 69 | 34 | 1 | 183 | 249 | 129 | 197 | 2.38e-13 | 67.8 |
| Msa0531360 | MtrunA17_Chr1g0205341 | 30.370 | 135 | 74 | 4 | 119 | 249 | 58 | 176 | 6.61e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531360 | AT1G79960.1 | 35.577 | 312 | 147 | 10 | 1 | 280 | 1 | 290 | 2.67e-41 | 144 |
| Msa0531360 | AT4G14860.1 | 52.542 | 59 | 27 | 1 | 192 | 249 | 109 | 167 | 2.41e-13 | 67.4 |
| Msa0531360 | AT1G05420.1 | 34.343 | 99 | 63 | 1 | 153 | 249 | 117 | 215 | 7.05e-12 | 64.3 |
| Msa0531360 | AT1G05420.2 | 34.343 | 99 | 63 | 1 | 153 | 249 | 133 | 231 | 7.30e-12 | 64.3 |
Find 55 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTGACACGTGGCTTCT+CGG | 0.243442 | 4_1:-5587076 | Msa0531360:CDS |
| GAGACCAATCCATTTCTTAG+AGG | 0.317572 | 4_1:+5587404 | None:intergenic |
| TTCGTTTATCCTCTAAGAAA+TGG | 0.318720 | 4_1:-5587413 | Msa0531360:CDS |
| AAAGAGAAAGAAGGAGTTCT+AGG | 0.365664 | 4_1:+5587366 | None:intergenic |
| CGAACGCTCCGCGGCTTCCC+TGG | 0.369632 | 4_1:+5586706 | None:intergenic |
| AACACAACAACACAATTATC+AGG | 0.372043 | 4_1:+5586940 | None:intergenic |
| GGAACAATGAAAGTGTTGAT+TGG | 0.389592 | 4_1:-5586849 | Msa0531360:CDS |
| TGAAAATGAATTAACATTGA+AGG | 0.390896 | 4_1:+5586984 | None:intergenic |
| ACAAACACATTTGAAGAAAC+AGG | 0.393177 | 4_1:-5587036 | Msa0531360:CDS |
| AAGTGTTGATTGGGATTTCA+TGG | 0.402630 | 4_1:-5586839 | Msa0531360:CDS |
| CAGGGAAGCCGCGGAGCGTT+CGG | 0.404751 | 4_1:-5586705 | Msa0531360:CDS |
| GAACAATGAAAGTGTTGATT+GGG | 0.405122 | 4_1:-5586848 | Msa0531360:CDS |
| GCGTTCGGACGGTTAGGATT+GGG | 0.405374 | 4_1:-5586690 | Msa0531360:CDS |
| TGCTTCCACCGTTTCTTGCA+TGG | 0.412023 | 4_1:+5586879 | None:intergenic |
| TTTCTGACACGTGGCTTCTC+GGG | 0.419983 | 4_1:-5587075 | Msa0531360:CDS |
| CGGTTTCTTTGTCATCTTCG+AGG | 0.434566 | 4_1:+5587253 | None:intergenic |
| TATAGTGTTGTTGTTACAAT+CGG | 0.439894 | 4_1:+5587233 | None:intergenic |
| AGCGTTCGGACGGTTAGGAT+TGG | 0.441450 | 4_1:-5586691 | Msa0531360:CDS |
| GAATTAACTTTAGAATTTGA+AGG | 0.445602 | 4_1:-5586640 | Msa0531360:CDS |
| AAACGGTGGAAGCAAGGTTA+AGG | 0.446924 | 4_1:-5586870 | Msa0531360:CDS |
| CGCGGAGCGTTCGGACGGTT+AGG | 0.454970 | 4_1:-5586696 | Msa0531360:CDS |
| AGGATAAACGAAGTTGTGTT+GGG | 0.458162 | 4_1:+5587424 | None:intergenic |
| ACGAAGTTGTGTTGGGCGAT+TGG | 0.459516 | 4_1:+5587431 | None:intergenic |
| CGAAAATCATCATAAGGACT+TGG | 0.467264 | 4_1:+5586907 | None:intergenic |
| GAGACACCATTGGATCTTTG+TGG | 0.467751 | 4_1:-5587111 | Msa0531360:CDS |
| CTCTATCATGAGGAAGAGTT+CGG | 0.473366 | 4_1:-5586737 | Msa0531360:CDS |
| GATCTTCGAAAATCATCATA+AGG | 0.481189 | 4_1:+5586901 | None:intergenic |
| AGAAGATGATGAAGAAGAAG+AGG | 0.493363 | 4_1:-5587190 | Msa0531360:CDS |
| GAGGATAAACGAAGTTGTGT+TGG | 0.494329 | 4_1:+5587423 | None:intergenic |
| TGATAATTGTGTTGTTGTGT+TGG | 0.495366 | 4_1:-5586938 | Msa0531360:CDS |
| TGAAATTCTCGAAGAGAAAA+CGG | 0.503837 | 4_1:+5587286 | None:intergenic |
| TTATCCTCTAAGAAATGGAT+TGG | 0.514704 | 4_1:-5587408 | Msa0531360:CDS |
| AAGAGTTCGGAGACTAAACC+AGG | 0.517918 | 4_1:-5586724 | Msa0531360:CDS |
| TCGAAGATCCATGCAAGAAA+CGG | 0.523834 | 4_1:-5586887 | Msa0531360:CDS |
| TTCATCCAACGAGACACCAT+TGG | 0.547786 | 4_1:-5587121 | Msa0531360:CDS |
| TTAGGATTGGGACTGAGGTA+AGG | 0.548983 | 4_1:-5586678 | Msa0531360:CDS |
| TGCAAGAAACGGTGGAAGCA+AGG | 0.552104 | 4_1:-5586876 | Msa0531360:CDS |
| TTGTTGTCAAAAGAGAAAGA+AGG | 0.565659 | 4_1:+5587357 | None:intergenic |
| GACGGTTAGGATTGGGACTG+AGG | 0.576913 | 4_1:-5586683 | Msa0531360:CDS |
| TGTGTTTGTTGTTGTTGTCG+TGG | 0.578804 | 4_1:+5587050 | None:intergenic |
| AAGATCCAATGGTGTCTCGT+TGG | 0.579089 | 4_1:+5587116 | None:intergenic |
| AAGAAATGGATTGGTCTCAA+AGG | 0.580257 | 4_1:-5587399 | Msa0531360:CDS |
| CTCGTTGGATGAATCAAACA+AGG | 0.592816 | 4_1:+5587131 | None:intergenic |
| GAAGCCGCGGAGCGTTCGGA+CGG | 0.601979 | 4_1:-5586701 | Msa0531360:CDS |
| GTGACTTGATCTCTATCATG+AGG | 0.602549 | 4_1:-5586747 | Msa0531360:CDS |
| AGACTAAACCAGGGAAGCCG+CGG | 0.604751 | 4_1:-5586714 | Msa0531360:CDS |
| AATAGATTCTTTCTGACACG+TGG | 0.610420 | 4_1:-5587084 | Msa0531360:CDS |
| TTAGATCCACAAAGATCCAA+TGG | 0.615900 | 4_1:+5587105 | None:intergenic |
| ACGGTCAACATCTTCGAGTG+TGG | 0.632740 | 4_1:+5587305 | None:intergenic |
| TTGGATGAATCAAACAAGGT+GGG | 0.642701 | 4_1:+5587135 | None:intergenic |
| AAGATCCATGCAAGAAACGG+TGG | 0.645271 | 4_1:-5586884 | Msa0531360:CDS |
| GGATTGGGACTGAGGTAAGG+CGG | 0.658738 | 4_1:-5586675 | Msa0531360:CDS |
| GTTGGATGAATCAAACAAGG+TGG | 0.690695 | 4_1:+5587134 | None:intergenic |
| AGAGTTCGGAGACTAAACCA+GGG | 0.713620 | 4_1:-5586723 | Msa0531360:CDS |
| CTAACCGTCCGAACGCTCCG+CGG | 0.714481 | 4_1:+5586697 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAGAAAAATATTCAAAACA+AGG | - | chr4_1:5586954-5586973 | Msa0531360:CDS | 20.0% |
| !! | TGAAAATGAATTAACATTGA+AGG | + | chr4_1:5587132-5587151 | None:intergenic | 20.0% |
| !!! | CAATGTTAATTCATTTTCAA+AGG | - | chr4_1:5587133-5587152 | Msa0531360:CDS | 20.0% |
| !!! | GAATTAACTTTAGAATTTGA+AGG | - | chr4_1:5587473-5587492 | Msa0531360:CDS | 20.0% |
| !! | GAAGAAAAATATTCAAAACA+AGG | - | chr4_1:5586954-5586973 | Msa0531360:CDS | 20.0% |
| !! | TGAAAATGAATTAACATTGA+AGG | + | chr4_1:5587132-5587151 | None:intergenic | 20.0% |
| !!! | CAATGTTAATTCATTTTCAA+AGG | - | chr4_1:5587133-5587152 | Msa0531360:CDS | 20.0% |
| !!! | GAATTAACTTTAGAATTTGA+AGG | - | chr4_1:5587473-5587492 | Msa0531360:CDS | 20.0% |
| !! | TATAGTGTTGTTGTTACAAT+CGG | + | chr4_1:5586883-5586902 | None:intergenic | 25.0% |
| !! | GAATTAACATTGAAGGTTTT+TGG | + | chr4_1:5587125-5587144 | None:intergenic | 25.0% |
| !! | TGTTAATTCATTTTCAAAGG+AGG | - | chr4_1:5587136-5587155 | Msa0531360:CDS | 25.0% |
| !! | TATAGTGTTGTTGTTACAAT+CGG | + | chr4_1:5586883-5586902 | None:intergenic | 25.0% |
| !! | GAATTAACATTGAAGGTTTT+TGG | + | chr4_1:5587125-5587144 | None:intergenic | 25.0% |
| !! | TGTTAATTCATTTTCAAAGG+AGG | - | chr4_1:5587136-5587155 | Msa0531360:CDS | 25.0% |
| !! | AGGGATTTTTGAAAGTTCTT+TGG | + | chr4_1:5586636-5586655 | None:intergenic | 30.0% |
| ! | TTTGGAGAGGTAATTTTGAA+GGG | + | chr4_1:5586655-5586674 | None:intergenic | 30.0% |
| !! | TTTTGGAGAGGTAATTTTGA+AGG | + | chr4_1:5586656-5586675 | None:intergenic | 30.0% |
| ! | TTCGTTTATCCTCTAAGAAA+TGG | - | chr4_1:5586700-5586719 | Msa0531360:CDS | 30.0% |
| ! | TTATCCTCTAAGAAATGGAT+TGG | - | chr4_1:5586705-5586724 | Msa0531360:CDS | 30.0% |
| TTGTTGTCAAAAGAGAAAGA+AGG | + | chr4_1:5586759-5586778 | None:intergenic | 30.0% | |
| TGAAATTCTCGAAGAGAAAA+CGG | + | chr4_1:5586830-5586849 | None:intergenic | 30.0% | |
| ACAAACACATTTGAAGAAAC+AGG | - | chr4_1:5587077-5587096 | Msa0531360:CDS | 30.0% | |
| AACACAACAACACAATTATC+AGG | + | chr4_1:5587176-5587195 | None:intergenic | 30.0% | |
| ! | TGATAATTGTGTTGTTGTGT+TGG | - | chr4_1:5587175-5587194 | Msa0531360:CDS | 30.0% |
| GATCTTCGAAAATCATCATA+AGG | + | chr4_1:5587215-5587234 | None:intergenic | 30.0% | |
| !! | GAACAATGAAAGTGTTGATT+GGG | - | chr4_1:5587265-5587284 | Msa0531360:CDS | 30.0% |
| !! | AGGGATTTTTGAAAGTTCTT+TGG | + | chr4_1:5586636-5586655 | None:intergenic | 30.0% |
| ! | TTTGGAGAGGTAATTTTGAA+GGG | + | chr4_1:5586655-5586674 | None:intergenic | 30.0% |
| !! | TTTTGGAGAGGTAATTTTGA+AGG | + | chr4_1:5586656-5586675 | None:intergenic | 30.0% |
| ! | TTCGTTTATCCTCTAAGAAA+TGG | - | chr4_1:5586700-5586719 | Msa0531360:CDS | 30.0% |
| ! | TTATCCTCTAAGAAATGGAT+TGG | - | chr4_1:5586705-5586724 | Msa0531360:CDS | 30.0% |
| TTGTTGTCAAAAGAGAAAGA+AGG | + | chr4_1:5586759-5586778 | None:intergenic | 30.0% | |
| TGAAATTCTCGAAGAGAAAA+CGG | + | chr4_1:5586830-5586849 | None:intergenic | 30.0% | |
| ACAAACACATTTGAAGAAAC+AGG | - | chr4_1:5587077-5587096 | Msa0531360:CDS | 30.0% | |
| AACACAACAACACAATTATC+AGG | + | chr4_1:5587176-5587195 | None:intergenic | 30.0% | |
| ! | TGATAATTGTGTTGTTGTGT+TGG | - | chr4_1:5587175-5587194 | Msa0531360:CDS | 30.0% |
| GATCTTCGAAAATCATCATA+AGG | + | chr4_1:5587215-5587234 | None:intergenic | 30.0% | |
| !! | GAACAATGAAAGTGTTGATT+GGG | - | chr4_1:5587265-5587284 | Msa0531360:CDS | 30.0% |
| !!! | GATTGGTTTTGATTTTGGAG+AGG | + | chr4_1:5586668-5586687 | None:intergenic | 35.0% |
| AGGATAAACGAAGTTGTGTT+GGG | + | chr4_1:5586692-5586711 | None:intergenic | 35.0% | |
| !! | AAGAAATGGATTGGTCTCAA+AGG | - | chr4_1:5586714-5586733 | Msa0531360:CDS | 35.0% |
| AAAGAGAAAGAAGGAGTTCT+AGG | + | chr4_1:5586750-5586769 | None:intergenic | 35.0% | |
| CAAGAAAAACAACGACAACA+AGG | - | chr4_1:5586776-5586795 | Msa0531360:CDS | 35.0% | |
| AGAAGATGATGAAGAAGAAG+AGG | - | chr4_1:5586923-5586942 | Msa0531360:CDS | 35.0% | |
| TTGGATGAATCAAACAAGGT+GGG | + | chr4_1:5586981-5587000 | None:intergenic | 35.0% | |
| TTAGATCCACAAAGATCCAA+TGG | + | chr4_1:5587011-5587030 | None:intergenic | 35.0% | |
| AATAGATTCTTTCTGACACG+TGG | - | chr4_1:5587029-5587048 | Msa0531360:CDS | 35.0% | |
| CGAAAATCATCATAAGGACT+TGG | + | chr4_1:5587209-5587228 | None:intergenic | 35.0% | |
| !! | GGAACAATGAAAGTGTTGAT+TGG | - | chr4_1:5587264-5587283 | Msa0531360:CDS | 35.0% |
| !! | AAGTGTTGATTGGGATTTCA+TGG | - | chr4_1:5587274-5587293 | Msa0531360:CDS | 35.0% |
| !!! | GATTGGTTTTGATTTTGGAG+AGG | + | chr4_1:5586668-5586687 | None:intergenic | 35.0% |
| AGGATAAACGAAGTTGTGTT+GGG | + | chr4_1:5586692-5586711 | None:intergenic | 35.0% | |
| !! | AAGAAATGGATTGGTCTCAA+AGG | - | chr4_1:5586714-5586733 | Msa0531360:CDS | 35.0% |
| AAAGAGAAAGAAGGAGTTCT+AGG | + | chr4_1:5586750-5586769 | None:intergenic | 35.0% | |
| CAAGAAAAACAACGACAACA+AGG | - | chr4_1:5586776-5586795 | Msa0531360:CDS | 35.0% | |
| AGAAGATGATGAAGAAGAAG+AGG | - | chr4_1:5586923-5586942 | Msa0531360:CDS | 35.0% | |
| TTGGATGAATCAAACAAGGT+GGG | + | chr4_1:5586981-5587000 | None:intergenic | 35.0% | |
| TTAGATCCACAAAGATCCAA+TGG | + | chr4_1:5587011-5587030 | None:intergenic | 35.0% | |
| AATAGATTCTTTCTGACACG+TGG | - | chr4_1:5587029-5587048 | Msa0531360:CDS | 35.0% | |
| CGAAAATCATCATAAGGACT+TGG | + | chr4_1:5587209-5587228 | None:intergenic | 35.0% | |
| !! | GGAACAATGAAAGTGTTGAT+TGG | - | chr4_1:5587264-5587283 | Msa0531360:CDS | 35.0% |
| !! | AAGTGTTGATTGGGATTTCA+TGG | - | chr4_1:5587274-5587293 | Msa0531360:CDS | 35.0% |
| !!! | TGGGCGATTGGTTTTGATTT+TGG | + | chr4_1:5586673-5586692 | None:intergenic | 40.0% |
| GAGGATAAACGAAGTTGTGT+TGG | + | chr4_1:5586693-5586712 | None:intergenic | 40.0% | |
| GAGACCAATCCATTTCTTAG+AGG | + | chr4_1:5586712-5586731 | None:intergenic | 40.0% | |
| GTTGGATGAATCAAACAAGG+TGG | + | chr4_1:5586982-5587001 | None:intergenic | 40.0% | |
| CTCGTTGGATGAATCAAACA+AGG | + | chr4_1:5586985-5587004 | None:intergenic | 40.0% | |
| !! | TGTGTTTGTTGTTGTTGTCG+TGG | + | chr4_1:5587066-5587085 | None:intergenic | 40.0% |
| TCGAAGATCCATGCAAGAAA+CGG | - | chr4_1:5587226-5587245 | Msa0531360:CDS | 40.0% | |
| GTGACTTGATCTCTATCATG+AGG | - | chr4_1:5587366-5587385 | Msa0531360:CDS | 40.0% | |
| CTCTATCATGAGGAAGAGTT+CGG | - | chr4_1:5587376-5587395 | Msa0531360:CDS | 40.0% | |
| !!! | TGGGCGATTGGTTTTGATTT+TGG | + | chr4_1:5586673-5586692 | None:intergenic | 40.0% |
| GAGGATAAACGAAGTTGTGT+TGG | + | chr4_1:5586693-5586712 | None:intergenic | 40.0% | |
| GAGACCAATCCATTTCTTAG+AGG | + | chr4_1:5586712-5586731 | None:intergenic | 40.0% | |
| GTTGGATGAATCAAACAAGG+TGG | + | chr4_1:5586982-5587001 | None:intergenic | 40.0% | |
| CTCGTTGGATGAATCAAACA+AGG | + | chr4_1:5586985-5587004 | None:intergenic | 40.0% | |
| !! | TGTGTTTGTTGTTGTTGTCG+TGG | + | chr4_1:5587066-5587085 | None:intergenic | 40.0% |
| TCGAAGATCCATGCAAGAAA+CGG | - | chr4_1:5587226-5587245 | Msa0531360:CDS | 40.0% | |
| GTGACTTGATCTCTATCATG+AGG | - | chr4_1:5587366-5587385 | Msa0531360:CDS | 40.0% | |
| CTCTATCATGAGGAAGAGTT+CGG | - | chr4_1:5587376-5587395 | Msa0531360:CDS | 40.0% | |
| CGGTTTCTTTGTCATCTTCG+AGG | + | chr4_1:5586863-5586882 | None:intergenic | 45.0% | |
| TTCATCCAACGAGACACCAT+TGG | - | chr4_1:5586992-5587011 | Msa0531360:CDS | 45.0% | |
| AAGATCCAATGGTGTCTCGT+TGG | + | chr4_1:5587000-5587019 | None:intergenic | 45.0% | |
| GAGACACCATTGGATCTTTG+TGG | - | chr4_1:5587002-5587021 | Msa0531360:CDS | 45.0% | |
| AAGATCCATGCAAGAAACGG+TGG | - | chr4_1:5587229-5587248 | Msa0531360:CDS | 45.0% | |
| AAACGGTGGAAGCAAGGTTA+AGG | - | chr4_1:5587243-5587262 | Msa0531360:CDS | 45.0% | |
| AAGAGTTCGGAGACTAAACC+AGG | - | chr4_1:5587389-5587408 | Msa0531360:CDS | 45.0% | |
| AGAGTTCGGAGACTAAACCA+GGG | - | chr4_1:5587390-5587409 | Msa0531360:CDS | 45.0% | |
| TTAGGATTGGGACTGAGGTA+AGG | - | chr4_1:5587435-5587454 | Msa0531360:CDS | 45.0% | |
| CGGTTTCTTTGTCATCTTCG+AGG | + | chr4_1:5586863-5586882 | None:intergenic | 45.0% | |
| TTCATCCAACGAGACACCAT+TGG | - | chr4_1:5586992-5587011 | Msa0531360:CDS | 45.0% | |
| AAGATCCAATGGTGTCTCGT+TGG | + | chr4_1:5587000-5587019 | None:intergenic | 45.0% | |
| GAGACACCATTGGATCTTTG+TGG | - | chr4_1:5587002-5587021 | Msa0531360:CDS | 45.0% | |
| AAGATCCATGCAAGAAACGG+TGG | - | chr4_1:5587229-5587248 | Msa0531360:CDS | 45.0% | |
| AAACGGTGGAAGCAAGGTTA+AGG | - | chr4_1:5587243-5587262 | Msa0531360:CDS | 45.0% | |
| AAGAGTTCGGAGACTAAACC+AGG | - | chr4_1:5587389-5587408 | Msa0531360:CDS | 45.0% | |
| AGAGTTCGGAGACTAAACCA+GGG | - | chr4_1:5587390-5587409 | Msa0531360:CDS | 45.0% | |
| TTAGGATTGGGACTGAGGTA+AGG | - | chr4_1:5587435-5587454 | Msa0531360:CDS | 45.0% | |
| ACGAAGTTGTGTTGGGCGAT+TGG | + | chr4_1:5586685-5586704 | None:intergenic | 50.0% | |
| ACGGTCAACATCTTCGAGTG+TGG | + | chr4_1:5586811-5586830 | None:intergenic | 50.0% | |
| CTTTCTGACACGTGGCTTCT+CGG | - | chr4_1:5587037-5587056 | Msa0531360:CDS | 50.0% | |
| TTTCTGACACGTGGCTTCTC+GGG | - | chr4_1:5587038-5587057 | Msa0531360:CDS | 50.0% | |
| TGCTTCCACCGTTTCTTGCA+TGG | + | chr4_1:5587237-5587256 | None:intergenic | 50.0% | |
| TGCAAGAAACGGTGGAAGCA+AGG | - | chr4_1:5587237-5587256 | Msa0531360:CDS | 50.0% | |
| ACGAAGTTGTGTTGGGCGAT+TGG | + | chr4_1:5586685-5586704 | None:intergenic | 50.0% | |
| ACGGTCAACATCTTCGAGTG+TGG | + | chr4_1:5586811-5586830 | None:intergenic | 50.0% | |
| CTTTCTGACACGTGGCTTCT+CGG | - | chr4_1:5587037-5587056 | Msa0531360:CDS | 50.0% | |
| TTTCTGACACGTGGCTTCTC+GGG | - | chr4_1:5587038-5587057 | Msa0531360:CDS | 50.0% | |
| TGCTTCCACCGTTTCTTGCA+TGG | + | chr4_1:5587237-5587256 | None:intergenic | 50.0% | |
| TGCAAGAAACGGTGGAAGCA+AGG | - | chr4_1:5587237-5587256 | Msa0531360:CDS | 50.0% | |
| AGACTAAACCAGGGAAGCCG+CGG | - | chr4_1:5587399-5587418 | Msa0531360:CDS | 55.0% | |
| AGCGTTCGGACGGTTAGGAT+TGG | - | chr4_1:5587422-5587441 | Msa0531360:CDS | 55.0% | |
| GCGTTCGGACGGTTAGGATT+GGG | - | chr4_1:5587423-5587442 | Msa0531360:CDS | 55.0% | |
| GACGGTTAGGATTGGGACTG+AGG | - | chr4_1:5587430-5587449 | Msa0531360:CDS | 55.0% | |
| GGATTGGGACTGAGGTAAGG+CGG | - | chr4_1:5587438-5587457 | Msa0531360:CDS | 55.0% | |
| AGACTAAACCAGGGAAGCCG+CGG | - | chr4_1:5587399-5587418 | Msa0531360:CDS | 55.0% | |
| AGCGTTCGGACGGTTAGGAT+TGG | - | chr4_1:5587422-5587441 | Msa0531360:CDS | 55.0% | |
| GCGTTCGGACGGTTAGGATT+GGG | - | chr4_1:5587423-5587442 | Msa0531360:CDS | 55.0% | |
| GACGGTTAGGATTGGGACTG+AGG | - | chr4_1:5587430-5587449 | Msa0531360:CDS | 55.0% | |
| GGATTGGGACTGAGGTAAGG+CGG | - | chr4_1:5587438-5587457 | Msa0531360:CDS | 55.0% | |
| CTAACCGTCCGAACGCTCCG+CGG | + | chr4_1:5587419-5587438 | None:intergenic | 65.0% | |
| CTAACCGTCCGAACGCTCCG+CGG | + | chr4_1:5587419-5587438 | None:intergenic | 65.0% | |
| ! | CAGGGAAGCCGCGGAGCGTT+CGG | - | chr4_1:5587408-5587427 | Msa0531360:CDS | 70.0% |
| ! | GAAGCCGCGGAGCGTTCGGA+CGG | - | chr4_1:5587412-5587431 | Msa0531360:CDS | 70.0% |
| ! | CGCGGAGCGTTCGGACGGTT+AGG | - | chr4_1:5587417-5587436 | Msa0531360:CDS | 70.0% |
| ! | CAGGGAAGCCGCGGAGCGTT+CGG | - | chr4_1:5587408-5587427 | Msa0531360:CDS | 70.0% |
| ! | GAAGCCGCGGAGCGTTCGGA+CGG | - | chr4_1:5587412-5587431 | Msa0531360:CDS | 70.0% |
| ! | CGCGGAGCGTTCGGACGGTT+AGG | - | chr4_1:5587417-5587436 | Msa0531360:CDS | 70.0% |
| CGAACGCTCCGCGGCTTCCC+TGG | + | chr4_1:5587410-5587429 | None:intergenic | 75.0% | |
| CGAACGCTCCGCGGCTTCCC+TGG | + | chr4_1:5587410-5587429 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 5586630 | 5587505 | 5586630 | ID=Msa0531360;Name=Msa0531360 |
| chr4_1 | mRNA | 5586630 | 5587505 | 5586630 | ID=Msa0531360-mRNA-1;Parent=Msa0531360;Name=Msa0531360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|291 |
| chr4_1 | exon | 5586630 | 5587505 | 5586630 | ID=Msa0531360-mRNA-1:exon:1779;Parent=Msa0531360-mRNA-1 |
| chr4_1 | CDS | 5586630 | 5587505 | 5586630 | ID=Msa0531360-mRNA-1:cds;Parent=Msa0531360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
