Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531470 | XP_039683260.1 | 77.340 | 203 | 10 | 3 | 1 | 167 | 1 | 203 | 1.65e-101 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531470 | A0A072TPN7 | 80.625 | 160 | 10 | 2 | 1 | 139 | 1 | 160 | 2.33e-83 | 254 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0531470 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531470 | MtrunA17_Chr6g0451441 | 53.158 | 190 | 53 | 4 | 15 | 170 | 70 | 257 | 2.12e-56 | 185 |
| Msa0531470 | MtrunA17_Chr5g0441581 | 50.739 | 203 | 54 | 5 | 1 | 167 | 1 | 193 | 2.37e-55 | 187 |
| Msa0531470 | MtrunA17_Chr5g0441581 | 93.878 | 49 | 3 | 0 | 167 | 215 | 410 | 458 | 3.12e-23 | 97.1 |
| Msa0531470 | MtrunA17_Chr2g0296781 | 33.333 | 198 | 101 | 6 | 37 | 213 | 16 | 203 | 5.05e-21 | 90.9 |
| Msa0531470 | MtrunA17_Chr2g0296781 | 66.667 | 48 | 16 | 0 | 167 | 214 | 382 | 429 | 6.67e-14 | 70.1 |
| Msa0531470 | MtrunA17_Chr6g0477261 | 66.667 | 48 | 16 | 0 | 167 | 214 | 271 | 318 | 7.50e-14 | 69.7 |
| Msa0531470 | MtrunA17_Chr1g0196541 | 61.224 | 49 | 19 | 0 | 167 | 215 | 382 | 430 | 1.47e-12 | 66.2 |
| Msa0531470 | MtrunA17_Chr1g0196541 | 28.409 | 176 | 98 | 5 | 27 | 181 | 6 | 174 | 1.37e-11 | 63.2 |
| Msa0531470 | MtrunA17_Chr5g0448761 | 58.333 | 48 | 20 | 0 | 168 | 215 | 458 | 505 | 1.69e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531470 | AT4G38180.1 | 45.946 | 74 | 40 | 0 | 142 | 215 | 441 | 514 | 1.26e-11 | 63.9 |
Find 34 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACATCTCTTTCATTAAA+TGG | 0.147918 | 4_1:-5674865 | None:intergenic |
| TTGAACAACCTTGCCTTTGT+AGG | 0.343323 | 4_1:-5674721 | None:intergenic |
| GTTCAAGGCTAACAAGAATA+TGG | 0.357986 | 4_1:+5674738 | Msa0531470:CDS |
| CCACAATCCACAAAATCATT+TGG | 0.386069 | 4_1:-5674362 | None:intergenic |
| AACAAGGAACGGCGTGCAAT+TGG | 0.405287 | 4_1:+5674898 | Msa0531470:CDS |
| TAGAGAATATGCTTTGAGAA+AGG | 0.418901 | 4_1:+5674471 | Msa0531470:intron |
| AGAGAATATGCTTTGAGAAA+GGG | 0.433857 | 4_1:+5674472 | Msa0531470:intron |
| TGAACAACCTTGCCTTTGTA+GGG | 0.436560 | 4_1:-5674720 | None:intergenic |
| CAACCTTGCCTTTGTAGGGC+TGG | 0.439468 | 4_1:-5674716 | None:intergenic |
| ACATCGAGAAAAGGAAATGA+TGG | 0.450797 | 4_1:+5674514 | Msa0531470:CDS |
| TTTCGTAAATTGATTTAGAC+TGG | 0.452736 | 4_1:-5675646 | None:intergenic |
| CTGGTATGATGAGAATGATT+AGG | 0.463235 | 4_1:-5674697 | None:intergenic |
| TACAAAGGCAAGGTTGTTCA+AGG | 0.468300 | 4_1:+5674723 | Msa0531470:CDS |
| TTGAAGACACGTCCGACAAT+GGG | 0.482433 | 4_1:+5674604 | Msa0531470:intron |
| AACTTGATACAAATCTTAGC+AGG | 0.490559 | 4_1:-5674637 | None:intergenic |
| TCTTGCATGCACAAGAGATC+GGG | 0.494449 | 4_1:+5674555 | Msa0531470:CDS |
| TTCTTGCATGCACAAGAGAT+CGG | 0.495746 | 4_1:+5674554 | Msa0531470:CDS |
| AAGATTAGAACATCGAGAAA+AGG | 0.501177 | 4_1:+5674505 | Msa0531470:CDS |
| TGTATCAAGTTGAAAGCAGA+TGG | 0.504773 | 4_1:+5674649 | Msa0531470:CDS |
| ATTCAAATCAATGATGATGC+AGG | 0.511726 | 4_1:+5674781 | Msa0531470:CDS |
| CGGCGTGCAATTGGAAAAGA+AGG | 0.518535 | 4_1:+5674907 | Msa0531470:CDS |
| TGTGGTAGTATTCGTGATGA+AGG | 0.543788 | 4_1:+5674380 | Msa0531470:CDS |
| CATCGAGAAAAGGAAATGAT+GGG | 0.554779 | 4_1:+5674515 | Msa0531470:CDS |
| TGAAGATGAAGATGCATTGT+GGG | 0.555905 | 4_1:+5674427 | Msa0531470:CDS |
| ATTGAAGACACGTCCGACAA+TGG | 0.579883 | 4_1:+5674603 | Msa0531470:intron |
| ATATGGACTTGCATGTAAAG+AGG | 0.580323 | 4_1:+5674755 | Msa0531470:CDS |
| GGAATTATGTTAACAAGGAA+CGG | 0.587619 | 4_1:+5674887 | Msa0531470:CDS |
| TTGAAGATGAAGATGCATTG+TGG | 0.610005 | 4_1:+5674426 | Msa0531470:CDS |
| TCATCATACCAGCCCTACAA+AGG | 0.614008 | 4_1:+5674708 | Msa0531470:CDS |
| TGTGAGGAATTATGTTAACA+AGG | 0.648059 | 4_1:+5674882 | Msa0531470:CDS |
| ATCGAGAAAAGGAAATGATG+GGG | 0.649742 | 4_1:+5674516 | Msa0531470:CDS |
| ATACCAGCCCTACAAAGGCA+AGG | 0.665308 | 4_1:+5674713 | Msa0531470:CDS |
| GAGAAAAGGAAATGATGGGG+AGG | 0.686066 | 4_1:+5674519 | Msa0531470:CDS |
| CATTTAATGAAAGAGATGTG+AGG | 0.724148 | 4_1:+5674866 | Msa0531470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTATAAAATGATTTAACAT+AGG | - | chr4_1:5674455-5674474 | None:intergenic | 15.0% |
| !! | TCTATTTCATAAAAGAAATT+TGG | - | chr4_1:5674982-5675001 | None:intergenic | 15.0% |
| !!! | TTTCTTTTATGAAATAGATT+TGG | + | chr4_1:5674984-5675003 | Msa0531470:intron | 15.0% |
| !!! | CTTGTTAAGAAATTATTTTT+GGG | + | chr4_1:5675554-5675573 | Msa0531470:intron | 15.0% |
| !! | TCTATAAAATGATTTAACAT+AGG | - | chr4_1:5674455-5674474 | None:intergenic | 15.0% |
| !! | TCTATTTCATAAAAGAAATT+TGG | - | chr4_1:5674982-5675001 | None:intergenic | 15.0% |
| !!! | TTTCTTTTATGAAATAGATT+TGG | + | chr4_1:5674984-5675003 | Msa0531470:intron | 15.0% |
| !!! | CTTGTTAAGAAATTATTTTT+GGG | + | chr4_1:5675554-5675573 | Msa0531470:intron | 15.0% |
| !! | TTGACAAAAATAGTTTATCA+AGG | - | chr4_1:5674944-5674963 | None:intergenic | 20.0% |
| !!! | TAAACTATTTTTGTCAAATG+AGG | + | chr4_1:5674947-5674966 | Msa0531470:intron | 20.0% |
| !!! | AAACTATTTTTGTCAAATGA+GGG | + | chr4_1:5674948-5674967 | Msa0531470:intron | 20.0% |
| !! | AAATAATTTCTTAACAAGGT+TGG | - | chr4_1:5675552-5675571 | None:intergenic | 20.0% |
| !! | CCAAAAATAATTTCTTAACA+AGG | - | chr4_1:5675556-5675575 | None:intergenic | 20.0% |
| !!! | CCTTGTTAAGAAATTATTTT+TGG | + | chr4_1:5675553-5675572 | Msa0531470:intron | 20.0% |
| !! | TTGACAAAAATAGTTTATCA+AGG | - | chr4_1:5674944-5674963 | None:intergenic | 20.0% |
| !!! | TAAACTATTTTTGTCAAATG+AGG | + | chr4_1:5674947-5674966 | Msa0531470:intron | 20.0% |
| !!! | AAACTATTTTTGTCAAATGA+GGG | + | chr4_1:5674948-5674967 | Msa0531470:intron | 20.0% |
| !! | AAATAATTTCTTAACAAGGT+TGG | - | chr4_1:5675552-5675571 | None:intergenic | 20.0% |
| !! | CCAAAAATAATTTCTTAACA+AGG | - | chr4_1:5675556-5675575 | None:intergenic | 20.0% |
| !!! | CCTTGTTAAGAAATTATTTT+TGG | + | chr4_1:5675553-5675572 | Msa0531470:intron | 20.0% |
| !! | AAAAGGCATATCATATTTGT+TGG | - | chr4_1:5675112-5675131 | None:intergenic | 25.0% |
| !!! | TTGTATGGCTTTTTAATTCA+TGG | + | chr4_1:5675214-5675233 | Msa0531470:intron | 25.0% |
| !!! | TAGATGATTTTGAAGAGAAA+TGG | + | chr4_1:5675448-5675467 | Msa0531470:intron | 25.0% |
| !!! | TTAAGAAATTATTTTTGGGC+AGG | + | chr4_1:5675558-5675577 | Msa0531470:intron | 25.0% |
| !! | TTTCGTAAATTGATTTAGAC+TGG | - | chr4_1:5675649-5675668 | None:intergenic | 25.0% |
| !! | AAAAGGCATATCATATTTGT+TGG | - | chr4_1:5675112-5675131 | None:intergenic | 25.0% |
| !!! | TTGTATGGCTTTTTAATTCA+TGG | + | chr4_1:5675214-5675233 | Msa0531470:intron | 25.0% |
| !!! | TAGATGATTTTGAAGAGAAA+TGG | + | chr4_1:5675448-5675467 | Msa0531470:intron | 25.0% |
| !!! | TTAAGAAATTATTTTTGGGC+AGG | + | chr4_1:5675558-5675577 | Msa0531470:intron | 25.0% |
| !! | TTTCGTAAATTGATTTAGAC+TGG | - | chr4_1:5675649-5675668 | None:intergenic | 25.0% |
| !! | TAGAGAATATGCTTTGAGAA+AGG | + | chr4_1:5674471-5674490 | Msa0531470:intron | 30.0% |
| !! | AGAGAATATGCTTTGAGAAA+GGG | + | chr4_1:5674472-5674491 | Msa0531470:intron | 30.0% |
| AAGATTAGAACATCGAGAAA+AGG | + | chr4_1:5674505-5674524 | Msa0531470:CDS | 30.0% | |
| AACTTGATACAAATCTTAGC+AGG | - | chr4_1:5674640-5674659 | None:intergenic | 30.0% | |
| ! | ATTCAAATCAATGATGATGC+AGG | + | chr4_1:5674781-5674800 | Msa0531470:CDS | 30.0% |
| CTCACATCTCTTTCATTAAA+TGG | - | chr4_1:5674868-5674887 | None:intergenic | 30.0% | |
| CATTTAATGAAAGAGATGTG+AGG | + | chr4_1:5674866-5674885 | Msa0531470:CDS | 30.0% | |
| TGTGAGGAATTATGTTAACA+AGG | + | chr4_1:5674882-5674901 | Msa0531470:CDS | 30.0% | |
| GGAATTATGTTAACAAGGAA+CGG | + | chr4_1:5674887-5674906 | Msa0531470:CDS | 30.0% | |
| ! | TTCATGTAAGGAATGTCTTT+TGG | + | chr4_1:5675016-5675035 | Msa0531470:intron | 30.0% |
| ! | TCATGTAAGGAATGTCTTTT+GGG | + | chr4_1:5675017-5675036 | Msa0531470:intron | 30.0% |
| AATCAACATTACTTGGATGT+GGG | + | chr4_1:5675163-5675182 | Msa0531470:intron | 30.0% | |
| AAAATTGTCGAAAAACTCAG+CGG | + | chr4_1:5675363-5675382 | Msa0531470:intron | 30.0% | |
| TTGAGCTTCAACAAAATCAT+CGG | + | chr4_1:5675490-5675509 | Msa0531470:intron | 30.0% | |
| TGTATAATGAACGTCATAGA+TGG | + | chr4_1:5675523-5675542 | Msa0531470:intron | 30.0% | |
| GTATAATGAACGTCATAGAT+GGG | + | chr4_1:5675524-5675543 | Msa0531470:intron | 30.0% | |
| !!! | AGTATACACGCTTTTTTTGA+TGG | + | chr4_1:5675606-5675625 | Msa0531470:CDS | 30.0% |
| !! | TAGAGAATATGCTTTGAGAA+AGG | + | chr4_1:5674471-5674490 | Msa0531470:intron | 30.0% |
| !! | AGAGAATATGCTTTGAGAAA+GGG | + | chr4_1:5674472-5674491 | Msa0531470:intron | 30.0% |
| AAGATTAGAACATCGAGAAA+AGG | + | chr4_1:5674505-5674524 | Msa0531470:CDS | 30.0% | |
| AACTTGATACAAATCTTAGC+AGG | - | chr4_1:5674640-5674659 | None:intergenic | 30.0% | |
| ! | ATTCAAATCAATGATGATGC+AGG | + | chr4_1:5674781-5674800 | Msa0531470:CDS | 30.0% |
| CTCACATCTCTTTCATTAAA+TGG | - | chr4_1:5674868-5674887 | None:intergenic | 30.0% | |
| CATTTAATGAAAGAGATGTG+AGG | + | chr4_1:5674866-5674885 | Msa0531470:CDS | 30.0% | |
| TGTGAGGAATTATGTTAACA+AGG | + | chr4_1:5674882-5674901 | Msa0531470:CDS | 30.0% | |
| GGAATTATGTTAACAAGGAA+CGG | + | chr4_1:5674887-5674906 | Msa0531470:CDS | 30.0% | |
| ! | TTCATGTAAGGAATGTCTTT+TGG | + | chr4_1:5675016-5675035 | Msa0531470:intron | 30.0% |
| ! | TCATGTAAGGAATGTCTTTT+GGG | + | chr4_1:5675017-5675036 | Msa0531470:intron | 30.0% |
| AATCAACATTACTTGGATGT+GGG | + | chr4_1:5675163-5675182 | Msa0531470:intron | 30.0% | |
| AAAATTGTCGAAAAACTCAG+CGG | + | chr4_1:5675363-5675382 | Msa0531470:intron | 30.0% | |
| TTGAGCTTCAACAAAATCAT+CGG | + | chr4_1:5675490-5675509 | Msa0531470:intron | 30.0% | |
| TGTATAATGAACGTCATAGA+TGG | + | chr4_1:5675523-5675542 | Msa0531470:intron | 30.0% | |
| GTATAATGAACGTCATAGAT+GGG | + | chr4_1:5675524-5675543 | Msa0531470:intron | 30.0% | |
| !!! | AGTATACACGCTTTTTTTGA+TGG | + | chr4_1:5675606-5675625 | Msa0531470:CDS | 30.0% |
| ! | GGATGATCCAAATGATTTTG+TGG | + | chr4_1:5674355-5674374 | Msa0531470:CDS | 35.0% |
| CCACAATCCACAAAATCATT+TGG | - | chr4_1:5674365-5674384 | None:intergenic | 35.0% | |
| !! | CCAAATGATTTTGTGGATTG+TGG | + | chr4_1:5674362-5674381 | Msa0531470:CDS | 35.0% |
| TTGAAGATGAAGATGCATTG+TGG | + | chr4_1:5674426-5674445 | Msa0531470:CDS | 35.0% | |
| TGAAGATGAAGATGCATTGT+GGG | + | chr4_1:5674427-5674446 | Msa0531470:CDS | 35.0% | |
| !! | CTTTGAGAAAGGGTTTTGAT+TGG | + | chr4_1:5674482-5674501 | Msa0531470:CDS | 35.0% |
| ACATCGAGAAAAGGAAATGA+TGG | + | chr4_1:5674514-5674533 | Msa0531470:CDS | 35.0% | |
| CATCGAGAAAAGGAAATGAT+GGG | + | chr4_1:5674515-5674534 | Msa0531470:CDS | 35.0% | |
| ATCGAGAAAAGGAAATGATG+GGG | + | chr4_1:5674516-5674535 | Msa0531470:CDS | 35.0% | |
| !! | TGTATCAAGTTGAAAGCAGA+TGG | + | chr4_1:5674649-5674668 | Msa0531470:CDS | 35.0% |
| CTGGTATGATGAGAATGATT+AGG | - | chr4_1:5674700-5674719 | None:intergenic | 35.0% | |
| GTTCAAGGCTAACAAGAATA+TGG | + | chr4_1:5674738-5674757 | Msa0531470:CDS | 35.0% | |
| ATATGGACTTGCATGTAAAG+AGG | + | chr4_1:5674755-5674774 | Msa0531470:CDS | 35.0% | |
| ! | TGGATGACGATTTTCATGTA+AGG | + | chr4_1:5675004-5675023 | Msa0531470:intron | 35.0% |
| !!! | ATGCCTTTTGCTGTTTTTGT+TGG | + | chr4_1:5675123-5675142 | Msa0531470:intron | 35.0% |
| ACACCAACAAAAACAGCAAA+AGG | - | chr4_1:5675129-5675148 | None:intergenic | 35.0% | |
| ! | CAAGTAATGTTGATTGACCA+TGG | - | chr4_1:5675158-5675177 | None:intergenic | 35.0% |
| CATGGTCAATCAACATTACT+TGG | + | chr4_1:5675156-5675175 | Msa0531470:intron | 35.0% | |
| CAATCAACATTACTTGGATG+TGG | + | chr4_1:5675162-5675181 | Msa0531470:intron | 35.0% | |
| TATTGTGACTGACCAATGTA+AGG | + | chr4_1:5675269-5675288 | Msa0531470:intron | 35.0% | |
| ! | CATTTTGCATTGCCTTACAT+TGG | - | chr4_1:5675284-5675303 | None:intergenic | 35.0% |
| GCGGATATGGTGATTATAAA+AGG | + | chr4_1:5675382-5675401 | Msa0531470:intron | 35.0% | |
| ! | AACAAAATCATCGGTTGACT+GGG | + | chr4_1:5675499-5675518 | Msa0531470:intron | 35.0% |
| ! | ATTCTTTTTCTGCTCGACTA+CGG | - | chr4_1:5675689-5675708 | None:intergenic | 35.0% |
| ! | GGATGATCCAAATGATTTTG+TGG | + | chr4_1:5674355-5674374 | Msa0531470:CDS | 35.0% |
| CCACAATCCACAAAATCATT+TGG | - | chr4_1:5674365-5674384 | None:intergenic | 35.0% | |
| !! | CCAAATGATTTTGTGGATTG+TGG | + | chr4_1:5674362-5674381 | Msa0531470:CDS | 35.0% |
| TTGAAGATGAAGATGCATTG+TGG | + | chr4_1:5674426-5674445 | Msa0531470:CDS | 35.0% | |
| TGAAGATGAAGATGCATTGT+GGG | + | chr4_1:5674427-5674446 | Msa0531470:CDS | 35.0% | |
| !! | CTTTGAGAAAGGGTTTTGAT+TGG | + | chr4_1:5674482-5674501 | Msa0531470:CDS | 35.0% |
| ACATCGAGAAAAGGAAATGA+TGG | + | chr4_1:5674514-5674533 | Msa0531470:CDS | 35.0% | |
| CATCGAGAAAAGGAAATGAT+GGG | + | chr4_1:5674515-5674534 | Msa0531470:CDS | 35.0% | |
| ATCGAGAAAAGGAAATGATG+GGG | + | chr4_1:5674516-5674535 | Msa0531470:CDS | 35.0% | |
| !! | TGTATCAAGTTGAAAGCAGA+TGG | + | chr4_1:5674649-5674668 | Msa0531470:CDS | 35.0% |
| CTGGTATGATGAGAATGATT+AGG | - | chr4_1:5674700-5674719 | None:intergenic | 35.0% | |
| GTTCAAGGCTAACAAGAATA+TGG | + | chr4_1:5674738-5674757 | Msa0531470:CDS | 35.0% | |
| ATATGGACTTGCATGTAAAG+AGG | + | chr4_1:5674755-5674774 | Msa0531470:CDS | 35.0% | |
| ! | TGGATGACGATTTTCATGTA+AGG | + | chr4_1:5675004-5675023 | Msa0531470:intron | 35.0% |
| !!! | ATGCCTTTTGCTGTTTTTGT+TGG | + | chr4_1:5675123-5675142 | Msa0531470:intron | 35.0% |
| ACACCAACAAAAACAGCAAA+AGG | - | chr4_1:5675129-5675148 | None:intergenic | 35.0% | |
| ! | CAAGTAATGTTGATTGACCA+TGG | - | chr4_1:5675158-5675177 | None:intergenic | 35.0% |
| CATGGTCAATCAACATTACT+TGG | + | chr4_1:5675156-5675175 | Msa0531470:intron | 35.0% | |
| CAATCAACATTACTTGGATG+TGG | + | chr4_1:5675162-5675181 | Msa0531470:intron | 35.0% | |
| TATTGTGACTGACCAATGTA+AGG | + | chr4_1:5675269-5675288 | Msa0531470:intron | 35.0% | |
| ! | CATTTTGCATTGCCTTACAT+TGG | - | chr4_1:5675284-5675303 | None:intergenic | 35.0% |
| GCGGATATGGTGATTATAAA+AGG | + | chr4_1:5675382-5675401 | Msa0531470:intron | 35.0% | |
| ! | AACAAAATCATCGGTTGACT+GGG | + | chr4_1:5675499-5675518 | Msa0531470:intron | 35.0% |
| ! | ATTCTTTTTCTGCTCGACTA+CGG | - | chr4_1:5675689-5675708 | None:intergenic | 35.0% |
| TGTGGTAGTATTCGTGATGA+AGG | + | chr4_1:5674380-5674399 | Msa0531470:CDS | 40.0% | |
| TTCTTGCATGCACAAGAGAT+CGG | + | chr4_1:5674554-5674573 | Msa0531470:CDS | 40.0% | |
| !! | GGACAACTTTTTCCCATTGT+CGG | - | chr4_1:5674619-5674638 | None:intergenic | 40.0% |
| TGAACAACCTTGCCTTTGTA+GGG | - | chr4_1:5674723-5674742 | None:intergenic | 40.0% | |
| TTGAACAACCTTGCCTTTGT+AGG | - | chr4_1:5674724-5674743 | None:intergenic | 40.0% | |
| TACAAAGGCAAGGTTGTTCA+AGG | + | chr4_1:5674723-5674742 | Msa0531470:CDS | 40.0% | |
| CAATCTCTTGTTAGAGATGC+AGG | + | chr4_1:5674826-5674845 | Msa0531470:intron | 40.0% | |
| GCAATTGGAAAAGAAGGTGA+TGG | + | chr4_1:5674913-5674932 | Msa0531470:intron | 40.0% | |
| ! | AGGGCTGCTTATGAGTATTT+TGG | + | chr4_1:5675054-5675073 | Msa0531470:intron | 40.0% |
| TTTGTTGGTGTGAATCACCA+TGG | + | chr4_1:5675138-5675157 | Msa0531470:intron | 40.0% | |
| AAGACACAGAGTCGTTTGTA+TGG | + | chr4_1:5675199-5675218 | Msa0531470:intron | 40.0% | |
| ! | CAACAAAATCATCGGTTGAC+TGG | + | chr4_1:5675498-5675517 | Msa0531470:intron | 40.0% |
| TGTGGTAGTATTCGTGATGA+AGG | + | chr4_1:5674380-5674399 | Msa0531470:CDS | 40.0% | |
| TTCTTGCATGCACAAGAGAT+CGG | + | chr4_1:5674554-5674573 | Msa0531470:CDS | 40.0% | |
| !! | GGACAACTTTTTCCCATTGT+CGG | - | chr4_1:5674619-5674638 | None:intergenic | 40.0% |
| TGAACAACCTTGCCTTTGTA+GGG | - | chr4_1:5674723-5674742 | None:intergenic | 40.0% | |
| TTGAACAACCTTGCCTTTGT+AGG | - | chr4_1:5674724-5674743 | None:intergenic | 40.0% | |
| TACAAAGGCAAGGTTGTTCA+AGG | + | chr4_1:5674723-5674742 | Msa0531470:CDS | 40.0% | |
| CAATCTCTTGTTAGAGATGC+AGG | + | chr4_1:5674826-5674845 | Msa0531470:intron | 40.0% | |
| GCAATTGGAAAAGAAGGTGA+TGG | + | chr4_1:5674913-5674932 | Msa0531470:intron | 40.0% | |
| ! | AGGGCTGCTTATGAGTATTT+TGG | + | chr4_1:5675054-5675073 | Msa0531470:intron | 40.0% |
| TTTGTTGGTGTGAATCACCA+TGG | + | chr4_1:5675138-5675157 | Msa0531470:intron | 40.0% | |
| AAGACACAGAGTCGTTTGTA+TGG | + | chr4_1:5675199-5675218 | Msa0531470:intron | 40.0% | |
| ! | CAACAAAATCATCGGTTGAC+TGG | + | chr4_1:5675498-5675517 | Msa0531470:intron | 40.0% |
| ! | GAGAAAAGGAAATGATGGGG+AGG | + | chr4_1:5674519-5674538 | Msa0531470:CDS | 45.0% |
| TCTTGCATGCACAAGAGATC+GGG | + | chr4_1:5674555-5674574 | Msa0531470:CDS | 45.0% | |
| ATTGAAGACACGTCCGACAA+TGG | + | chr4_1:5674603-5674622 | Msa0531470:intron | 45.0% | |
| TTGAAGACACGTCCGACAAT+GGG | + | chr4_1:5674604-5674623 | Msa0531470:intron | 45.0% | |
| TCATCATACCAGCCCTACAA+AGG | + | chr4_1:5674708-5674727 | Msa0531470:CDS | 45.0% | |
| ! | TCAATGATGATGCAGGTGTG+AGG | + | chr4_1:5674788-5674807 | Msa0531470:intron | 45.0% |
| TCTCTTGTTAGAGATGCAGG+TGG | + | chr4_1:5674829-5674848 | Msa0531470:intron | 45.0% | |
| CTCTTGTTAGAGATGCAGGT+GGG | + | chr4_1:5674830-5674849 | Msa0531470:intron | 45.0% | |
| ! | TGGAAAAGAAGGTGATGGCA+AGG | + | chr4_1:5674918-5674937 | Msa0531470:intron | 45.0% |
| TTTGGGCTGATGCAAGAAGT+AGG | + | chr4_1:5675034-5675053 | Msa0531470:intron | 45.0% | |
| TTGGGCTGATGCAAGAAGTA+GGG | + | chr4_1:5675035-5675054 | Msa0531470:intron | 45.0% | |
| TTCATGGCTTCGTTGTATGC+TGG | + | chr4_1:5675230-5675249 | Msa0531470:intron | 45.0% | |
| TCATGGCTTCGTTGTATGCT+GGG | + | chr4_1:5675231-5675250 | Msa0531470:intron | 45.0% | |
| TCAGTCACAATACCAACAGG+GGG | - | chr4_1:5675261-5675280 | None:intergenic | 45.0% | |
| GTCAGTCACAATACCAACAG+GGG | - | chr4_1:5675262-5675281 | None:intergenic | 45.0% | |
| GGTCAGTCACAATACCAACA+GGG | - | chr4_1:5675263-5675282 | None:intergenic | 45.0% | |
| TGGTCAGTCACAATACCAAC+AGG | - | chr4_1:5675264-5675283 | None:intergenic | 45.0% | |
| GGCAATGCAAAATGCAATCG+AGG | + | chr4_1:5675290-5675309 | Msa0531470:intron | 45.0% | |
| ! | TTTTCCCTAAAACTCGCCAC+AGG | + | chr4_1:5675316-5675335 | Msa0531470:intron | 45.0% |
| TATGCCATAAACACCACCTG+TGG | - | chr4_1:5675335-5675354 | None:intergenic | 45.0% | |
| GTCGAAAAACTCAGCGGATA+TGG | + | chr4_1:5675369-5675388 | Msa0531470:intron | 45.0% | |
| ! | GAGAAAAGGAAATGATGGGG+AGG | + | chr4_1:5674519-5674538 | Msa0531470:CDS | 45.0% |
| TCTTGCATGCACAAGAGATC+GGG | + | chr4_1:5674555-5674574 | Msa0531470:CDS | 45.0% | |
| ATTGAAGACACGTCCGACAA+TGG | + | chr4_1:5674603-5674622 | Msa0531470:intron | 45.0% | |
| TTGAAGACACGTCCGACAAT+GGG | + | chr4_1:5674604-5674623 | Msa0531470:intron | 45.0% | |
| TCATCATACCAGCCCTACAA+AGG | + | chr4_1:5674708-5674727 | Msa0531470:CDS | 45.0% | |
| ! | TCAATGATGATGCAGGTGTG+AGG | + | chr4_1:5674788-5674807 | Msa0531470:intron | 45.0% |
| TCTCTTGTTAGAGATGCAGG+TGG | + | chr4_1:5674829-5674848 | Msa0531470:intron | 45.0% | |
| CTCTTGTTAGAGATGCAGGT+GGG | + | chr4_1:5674830-5674849 | Msa0531470:intron | 45.0% | |
| ! | TGGAAAAGAAGGTGATGGCA+AGG | + | chr4_1:5674918-5674937 | Msa0531470:intron | 45.0% |
| TTTGGGCTGATGCAAGAAGT+AGG | + | chr4_1:5675034-5675053 | Msa0531470:intron | 45.0% | |
| TTGGGCTGATGCAAGAAGTA+GGG | + | chr4_1:5675035-5675054 | Msa0531470:intron | 45.0% | |
| TTCATGGCTTCGTTGTATGC+TGG | + | chr4_1:5675230-5675249 | Msa0531470:intron | 45.0% | |
| TCATGGCTTCGTTGTATGCT+GGG | + | chr4_1:5675231-5675250 | Msa0531470:intron | 45.0% | |
| TCAGTCACAATACCAACAGG+GGG | - | chr4_1:5675261-5675280 | None:intergenic | 45.0% | |
| GTCAGTCACAATACCAACAG+GGG | - | chr4_1:5675262-5675281 | None:intergenic | 45.0% | |
| GGTCAGTCACAATACCAACA+GGG | - | chr4_1:5675263-5675282 | None:intergenic | 45.0% | |
| TGGTCAGTCACAATACCAAC+AGG | - | chr4_1:5675264-5675283 | None:intergenic | 45.0% | |
| GGCAATGCAAAATGCAATCG+AGG | + | chr4_1:5675290-5675309 | Msa0531470:intron | 45.0% | |
| ! | TTTTCCCTAAAACTCGCCAC+AGG | + | chr4_1:5675316-5675335 | Msa0531470:intron | 45.0% |
| TATGCCATAAACACCACCTG+TGG | - | chr4_1:5675335-5675354 | None:intergenic | 45.0% | |
| GTCGAAAAACTCAGCGGATA+TGG | + | chr4_1:5675369-5675388 | Msa0531470:intron | 45.0% | |
| ATACCAGCCCTACAAAGGCA+AGG | + | chr4_1:5674713-5674732 | Msa0531470:CDS | 50.0% | |
| AACAAGGAACGGCGTGCAAT+TGG | + | chr4_1:5674898-5674917 | Msa0531470:CDS | 50.0% | |
| CGGCGTGCAATTGGAAAAGA+AGG | + | chr4_1:5674907-5674926 | Msa0531470:CDS | 50.0% | |
| ! | CTTGGATGTGGGTTGCTATC+AGG | + | chr4_1:5675174-5675193 | Msa0531470:intron | 50.0% |
| ! | ACCACCTGTGGCGAGTTTTA+GGG | - | chr4_1:5675323-5675342 | None:intergenic | 50.0% |
| ATACCAGCCCTACAAAGGCA+AGG | + | chr4_1:5674713-5674732 | Msa0531470:CDS | 50.0% | |
| AACAAGGAACGGCGTGCAAT+TGG | + | chr4_1:5674898-5674917 | Msa0531470:CDS | 50.0% | |
| CGGCGTGCAATTGGAAAAGA+AGG | + | chr4_1:5674907-5674926 | Msa0531470:CDS | 50.0% | |
| ! | CTTGGATGTGGGTTGCTATC+AGG | + | chr4_1:5675174-5675193 | Msa0531470:intron | 50.0% |
| ! | ACCACCTGTGGCGAGTTTTA+GGG | - | chr4_1:5675323-5675342 | None:intergenic | 50.0% |
| CAACCTTGCCTTTGTAGGGC+TGG | - | chr4_1:5674719-5674738 | None:intergenic | 55.0% | |
| TCCCTAAAACTCGCCACAGG+TGG | + | chr4_1:5675319-5675338 | Msa0531470:intron | 55.0% | |
| ! | CACCACCTGTGGCGAGTTTT+AGG | - | chr4_1:5675324-5675343 | None:intergenic | 55.0% |
| CTCGCCACAGGTGGTGTTTA+TGG | + | chr4_1:5675328-5675347 | Msa0531470:intron | 55.0% | |
| CAACCTTGCCTTTGTAGGGC+TGG | - | chr4_1:5674719-5674738 | None:intergenic | 55.0% | |
| TCCCTAAAACTCGCCACAGG+TGG | + | chr4_1:5675319-5675338 | Msa0531470:intron | 55.0% | |
| ! | CACCACCTGTGGCGAGTTTT+AGG | - | chr4_1:5675324-5675343 | None:intergenic | 55.0% |
| CTCGCCACAGGTGGTGTTTA+TGG | + | chr4_1:5675328-5675347 | Msa0531470:intron | 55.0% | |
| ATGCTGGGAAAGCCCCCTGT+TGG | + | chr4_1:5675246-5675265 | Msa0531470:intron | 60.0% | |
| ATGCTGGGAAAGCCCCCTGT+TGG | + | chr4_1:5675246-5675265 | Msa0531470:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 5674353 | 5675728 | 5674353 | ID=Msa0531470;Name=Msa0531470 |
| chr4_1 | mRNA | 5674353 | 5675728 | 5674353 | ID=Msa0531470-mRNA-1;Parent=Msa0531470;Name=Msa0531470-mRNA-1;_AED=0.34;_eAED=0.36;_QI=0|0|0|0.8|0|0|5|0|215 |
| chr4_1 | exon | 5674353 | 5674456 | 5674353 | ID=Msa0531470-mRNA-1:exon:1846;Parent=Msa0531470-mRNA-1 |
| chr4_1 | exon | 5674474 | 5674594 | 5674474 | ID=Msa0531470-mRNA-1:exon:1847;Parent=Msa0531470-mRNA-1 |
| chr4_1 | exon | 5674610 | 5674802 | 5674610 | ID=Msa0531470-mRNA-1:exon:1848;Parent=Msa0531470-mRNA-1 |
| chr4_1 | exon | 5674848 | 5674928 | 5674848 | ID=Msa0531470-mRNA-1:exon:1849;Parent=Msa0531470-mRNA-1 |
| chr4_1 | exon | 5675580 | 5675728 | 5675580 | ID=Msa0531470-mRNA-1:exon:1850;Parent=Msa0531470-mRNA-1 |
| chr4_1 | CDS | 5674353 | 5674456 | 5674353 | ID=Msa0531470-mRNA-1:cds;Parent=Msa0531470-mRNA-1 |
| chr4_1 | CDS | 5674474 | 5674594 | 5674474 | ID=Msa0531470-mRNA-1:cds;Parent=Msa0531470-mRNA-1 |
| chr4_1 | CDS | 5674610 | 5674802 | 5674610 | ID=Msa0531470-mRNA-1:cds;Parent=Msa0531470-mRNA-1 |
| chr4_1 | CDS | 5674848 | 5674928 | 5674848 | ID=Msa0531470-mRNA-1:cds;Parent=Msa0531470-mRNA-1 |
| chr4_1 | CDS | 5675580 | 5675728 | 5675580 | ID=Msa0531470-mRNA-1:cds;Parent=Msa0531470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
