Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531950 | KHN19163.1 | 93.939 | 99 | 6 | 0 | 61 | 159 | 519 | 617 | 1.12e-54 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531950 | sp|Q9SCT4|IMK2_ARATH | 65.185 | 135 | 37 | 3 | 27 | 159 | 652 | 778 | 2.48e-46 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531950 | A0A0B2QGV9 | 93.939 | 99 | 6 | 0 | 61 | 159 | 519 | 617 | 5.34e-55 | 193 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531950 | MtrunA17_Chr4g0005201 | 98.990 | 99 | 1 | 0 | 61 | 159 | 646 | 744 | 3.19e-53 | 180 |
| Msa0531950 | MtrunA17_Chr5g0437741 | 74.766 | 107 | 27 | 0 | 53 | 159 | 630 | 736 | 5.51e-47 | 162 |
| Msa0531950 | MtrunA17_Chr5g0437731 | 67.647 | 68 | 22 | 0 | 53 | 120 | 62 | 129 | 9.15e-23 | 87.8 |
| Msa0531950 | MtrunA17_Chr8g0393211 | 51.087 | 92 | 37 | 2 | 61 | 149 | 520 | 606 | 2.41e-22 | 92.8 |
| Msa0531950 | MtrunA17_Chr4g0062911 | 52.174 | 92 | 36 | 2 | 61 | 149 | 492 | 578 | 4.94e-22 | 91.7 |
| Msa0531950 | MtrunA17_Chr6g0478621 | 52.174 | 92 | 36 | 2 | 61 | 149 | 523 | 609 | 6.21e-22 | 91.7 |
| Msa0531950 | MtrunA17_Chr3g0108301 | 51.087 | 92 | 37 | 2 | 61 | 149 | 501 | 587 | 6.25e-21 | 88.6 |
| Msa0531950 | MtrunA17_Chr5g0432851 | 52.688 | 93 | 34 | 3 | 61 | 149 | 502 | 588 | 7.51e-21 | 88.6 |
| Msa0531950 | MtrunA17_Chr3g0126281 | 52.174 | 92 | 37 | 2 | 61 | 149 | 201 | 288 | 1.04e-20 | 87.0 |
| Msa0531950 | MtrunA17_Chr5g0396941 | 48.077 | 104 | 46 | 4 | 61 | 161 | 446 | 544 | 1.47e-20 | 87.4 |
| Msa0531950 | MtrunA17_Chr8g0387791 | 46.154 | 104 | 48 | 3 | 61 | 161 | 469 | 567 | 5.51e-20 | 85.9 |
| Msa0531950 | MtrunA17_Chr7g0245171 | 57.143 | 70 | 27 | 1 | 83 | 149 | 498 | 567 | 8.75e-20 | 85.5 |
| Msa0531950 | MtrunA17_Chr5g0428541 | 45.283 | 106 | 48 | 3 | 61 | 161 | 459 | 559 | 1.03e-19 | 85.1 |
| Msa0531950 | MtrunA17_Chr5g0434551 | 46.739 | 92 | 41 | 2 | 61 | 149 | 485 | 571 | 1.56e-19 | 84.7 |
| Msa0531950 | MtrunA17_Chr1g0209521 | 55.556 | 81 | 28 | 2 | 77 | 149 | 518 | 598 | 1.67e-19 | 84.7 |
| Msa0531950 | MtrunA17_Chr3g0128551 | 52.439 | 82 | 35 | 2 | 83 | 161 | 506 | 586 | 2.50e-19 | 84.0 |
| Msa0531950 | MtrunA17_Chr1g0159161 | 45.192 | 104 | 45 | 4 | 61 | 161 | 434 | 528 | 1.31e-18 | 82.0 |
| Msa0531950 | MtrunA17_Chr5g0423121 | 50.000 | 88 | 38 | 3 | 81 | 162 | 496 | 583 | 7.65e-18 | 79.7 |
| Msa0531950 | MtrunA17_Chr7g0237801 | 45.745 | 94 | 44 | 2 | 61 | 149 | 527 | 618 | 1.24e-17 | 79.3 |
| Msa0531950 | MtrunA17_Chr3g0126271 | 47.253 | 91 | 41 | 2 | 62 | 149 | 468 | 554 | 2.33e-17 | 78.6 |
| Msa0531950 | MtrunA17_Chr2g0292521 | 45.745 | 94 | 45 | 2 | 63 | 150 | 933 | 1026 | 4.30e-15 | 72.0 |
| Msa0531950 | MtrunA17_Chr7g0265601 | 39.806 | 103 | 43 | 3 | 61 | 149 | 523 | 620 | 7.21e-15 | 71.2 |
| Msa0531950 | MtrunA17_Chr1g0147701 | 42.857 | 91 | 43 | 3 | 84 | 166 | 505 | 594 | 1.80e-14 | 70.1 |
| Msa0531950 | MtrunA17_Chr2g0288391 | 33.835 | 133 | 77 | 3 | 27 | 150 | 437 | 567 | 2.20e-14 | 69.7 |
| Msa0531950 | MtrunA17_Chr2g0312651 | 39.815 | 108 | 62 | 3 | 61 | 165 | 955 | 1062 | 5.84e-14 | 68.6 |
| Msa0531950 | MtrunA17_Chr5g0440581 | 33.929 | 112 | 63 | 3 | 63 | 163 | 859 | 970 | 7.77e-14 | 68.2 |
| Msa0531950 | MtrunA17_Chr5g0445251 | 43.137 | 102 | 48 | 3 | 62 | 163 | 73 | 164 | 1.22e-13 | 66.2 |
| Msa0531950 | MtrunA17_Chr6g0478181 | 43.421 | 76 | 31 | 3 | 86 | 151 | 437 | 510 | 1.20e-12 | 64.7 |
| Msa0531950 | MtrunA17_Chr8g0376301 | 56.604 | 53 | 23 | 0 | 98 | 150 | 289 | 341 | 2.27e-12 | 63.9 |
| Msa0531950 | MtrunA17_Chr4g0060011 | 32.203 | 118 | 71 | 3 | 53 | 165 | 449 | 562 | 2.78e-12 | 63.5 |
| Msa0531950 | MtrunA17_Chr2g0313911 | 38.776 | 98 | 57 | 1 | 53 | 147 | 209 | 306 | 3.45e-12 | 63.2 |
| Msa0531950 | MtrunA17_Chr1g0169841 | 38.182 | 110 | 63 | 3 | 61 | 165 | 957 | 1066 | 3.51e-12 | 63.5 |
| Msa0531950 | MtrunA17_Chr2g0279071 | 44.872 | 78 | 35 | 2 | 76 | 147 | 289 | 364 | 3.84e-12 | 63.2 |
| Msa0531950 | MtrunA17_Chr2g0280191 | 39.091 | 110 | 60 | 5 | 61 | 166 | 838 | 944 | 4.16e-12 | 63.2 |
| Msa0531950 | MtrunA17_Chr7g0239371 | 39.785 | 93 | 53 | 1 | 61 | 150 | 483 | 575 | 4.83e-12 | 63.2 |
| Msa0531950 | MtrunA17_Chr5g0400681 | 44.578 | 83 | 42 | 3 | 50 | 130 | 828 | 908 | 7.20e-12 | 62.8 |
| Msa0531950 | MtrunA17_Chr6g0454661 | 36.082 | 97 | 57 | 1 | 61 | 152 | 975 | 1071 | 9.15e-12 | 62.4 |
| Msa0531950 | MtrunA17_Chr3g0129081 | 41.304 | 92 | 48 | 2 | 62 | 147 | 899 | 990 | 1.31e-11 | 62.0 |
| Msa0531950 | MtrunA17_Chr8g0379571 | 44.928 | 69 | 31 | 2 | 82 | 144 | 543 | 610 | 1.54e-11 | 61.6 |
| Msa0531950 | MtrunA17_Chr2g0277081 | 39.604 | 101 | 55 | 4 | 54 | 148 | 823 | 923 | 1.69e-11 | 61.6 |
| Msa0531950 | MtrunA17_Chr6g0488771 | 39.560 | 91 | 47 | 2 | 84 | 166 | 297 | 387 | 1.84e-11 | 61.2 |
| Msa0531950 | MtrunA17_Chr4g0054521 | 39.216 | 102 | 56 | 4 | 50 | 147 | 825 | 924 | 1.84e-11 | 61.6 |
| Msa0531950 | MtrunA17_Chr3g0096351 | 34.579 | 107 | 65 | 2 | 50 | 153 | 317 | 421 | 1.85e-11 | 61.2 |
| Msa0531950 | MtrunA17_Chr4g0046511 | 37.778 | 90 | 53 | 2 | 61 | 147 | 841 | 930 | 1.86e-11 | 61.6 |
| Msa0531950 | MtrunA17_Chr3g0117921 | 46.774 | 62 | 31 | 1 | 92 | 153 | 537 | 596 | 1.99e-11 | 61.2 |
| Msa0531950 | MtrunA17_Chr6g0454621 | 37.500 | 96 | 55 | 1 | 62 | 152 | 977 | 1072 | 2.34e-11 | 61.2 |
| Msa0531950 | MtrunA17_Chr3g0112111 | 45.000 | 60 | 33 | 0 | 61 | 120 | 493 | 552 | 2.75e-11 | 60.8 |
| Msa0531950 | MtrunA17_Chr3g0129391 | 37.864 | 103 | 60 | 3 | 61 | 160 | 1020 | 1121 | 3.17e-11 | 60.8 |
| Msa0531950 | MtrunA17_Chr3g0095081 | 38.947 | 95 | 51 | 5 | 53 | 142 | 862 | 954 | 3.30e-11 | 60.8 |
| Msa0531950 | MtrunA17_Chr7g0252301 | 35.052 | 97 | 58 | 1 | 61 | 152 | 998 | 1094 | 3.78e-11 | 60.5 |
| Msa0531950 | MtrunA17_Chr5g0442151 | 36.719 | 128 | 61 | 8 | 53 | 166 | 816 | 937 | 4.02e-11 | 60.5 |
| Msa0531950 | MtrunA17_Chr1g0189871 | 44.872 | 78 | 41 | 1 | 61 | 136 | 947 | 1024 | 4.48e-11 | 60.5 |
| Msa0531950 | MtrunA17_Chr5g0398441 | 37.079 | 89 | 53 | 1 | 62 | 147 | 758 | 846 | 5.45e-11 | 60.1 |
| Msa0531950 | MtrunA17_Chr2g0324931 | 45.714 | 70 | 37 | 1 | 79 | 147 | 858 | 927 | 6.32e-11 | 60.1 |
| Msa0531950 | MtrunA17_Chr2g0317071 | 38.384 | 99 | 50 | 4 | 52 | 144 | 932 | 1025 | 6.62e-11 | 59.7 |
| Msa0531950 | MtrunA17_Chr6g0452221 | 44.444 | 81 | 40 | 4 | 61 | 140 | 445 | 521 | 6.96e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0531950 | AT3G51740.1 | 65.185 | 135 | 37 | 3 | 27 | 159 | 652 | 778 | 2.53e-47 | 164 |
| Msa0531950 | AT2G26730.1 | 53.846 | 91 | 34 | 2 | 62 | 149 | 495 | 580 | 5.03e-23 | 95.1 |
| Msa0531950 | AT3G08680.1 | 51.190 | 84 | 38 | 1 | 81 | 161 | 503 | 586 | 1.56e-21 | 90.9 |
| Msa0531950 | AT3G08680.2 | 51.190 | 84 | 38 | 1 | 81 | 161 | 503 | 586 | 1.56e-21 | 90.9 |
| Msa0531950 | AT1G68400.1 | 59.211 | 76 | 26 | 1 | 79 | 149 | 522 | 597 | 9.28e-21 | 88.6 |
| Msa0531950 | AT3G17840.1 | 48.000 | 100 | 44 | 3 | 53 | 148 | 500 | 595 | 2.07e-20 | 87.4 |
| Msa0531950 | AT5G58300.3 | 51.087 | 92 | 37 | 3 | 61 | 149 | 504 | 590 | 2.67e-20 | 87.4 |
| Msa0531950 | AT5G58300.1 | 51.087 | 92 | 37 | 3 | 61 | 149 | 504 | 590 | 2.67e-20 | 87.4 |
| Msa0531950 | AT5G58300.2 | 51.087 | 92 | 37 | 3 | 61 | 149 | 504 | 590 | 2.67e-20 | 87.4 |
| Msa0531950 | AT5G41680.2 | 55.405 | 74 | 30 | 1 | 78 | 148 | 214 | 287 | 4.23e-19 | 82.8 |
| Msa0531950 | AT5G41680.1 | 55.405 | 74 | 30 | 1 | 78 | 148 | 240 | 313 | 4.52e-19 | 82.8 |
| Msa0531950 | AT1G64210.1 | 39.815 | 108 | 54 | 3 | 61 | 161 | 450 | 553 | 7.05e-19 | 83.2 |
| Msa0531950 | AT3G24660.1 | 47.312 | 93 | 45 | 2 | 61 | 149 | 519 | 611 | 1.57e-18 | 82.0 |
| Msa0531950 | AT5G05160.1 | 47.436 | 78 | 35 | 1 | 78 | 149 | 500 | 577 | 2.59e-18 | 81.6 |
| Msa0531950 | AT1G48480.1 | 45.263 | 95 | 45 | 2 | 57 | 148 | 511 | 601 | 3.65e-18 | 81.3 |
| Msa0531950 | AT4G23740.1 | 55.714 | 70 | 28 | 1 | 83 | 149 | 500 | 569 | 1.11e-17 | 79.7 |
| Msa0531950 | AT4G23740.2 | 55.714 | 70 | 28 | 1 | 83 | 149 | 500 | 569 | 1.11e-17 | 79.7 |
| Msa0531950 | AT2G36570.1 | 44.860 | 107 | 36 | 4 | 61 | 149 | 505 | 606 | 1.03e-15 | 73.9 |
| Msa0531950 | AT1G17230.2 | 42.593 | 108 | 59 | 3 | 61 | 165 | 945 | 1052 | 5.59e-15 | 72.0 |
| Msa0531950 | AT5G53320.1 | 47.826 | 69 | 31 | 1 | 81 | 149 | 467 | 530 | 6.00e-15 | 72.0 |
| Msa0531950 | AT1G17230.1 | 42.593 | 108 | 59 | 3 | 61 | 165 | 945 | 1052 | 8.10e-15 | 71.6 |
| Msa0531950 | AT5G16590.1 | 48.571 | 70 | 33 | 1 | 83 | 149 | 504 | 573 | 3.68e-14 | 69.7 |
| Msa0531950 | AT3G02880.1 | 35.922 | 103 | 58 | 2 | 62 | 161 | 490 | 587 | 6.07e-14 | 68.9 |
| Msa0531950 | AT4G20940.1 | 43.617 | 94 | 47 | 2 | 63 | 150 | 903 | 996 | 1.15e-13 | 68.2 |
| Msa0531950 | AT5G24100.1 | 39.506 | 81 | 47 | 2 | 82 | 161 | 504 | 583 | 1.76e-13 | 67.8 |
| Msa0531950 | AT3G49670.1 | 41.584 | 101 | 53 | 4 | 53 | 147 | 825 | 925 | 3.21e-13 | 67.0 |
| Msa0531950 | AT3G02130.1 | 35.849 | 106 | 61 | 2 | 61 | 161 | 1015 | 1118 | 8.33e-13 | 65.9 |
| Msa0531950 | AT3G02130.2 | 35.849 | 106 | 61 | 2 | 61 | 161 | 998 | 1101 | 8.48e-13 | 65.9 |
| Msa0531950 | AT5G63930.1 | 38.835 | 103 | 61 | 2 | 61 | 161 | 951 | 1053 | 9.86e-13 | 65.5 |
| Msa0531950 | AT5G63930.2 | 38.835 | 103 | 61 | 2 | 61 | 161 | 887 | 989 | 1.03e-12 | 65.5 |
| Msa0531950 | AT2G33170.2 | 41.860 | 86 | 48 | 2 | 61 | 144 | 971 | 1056 | 1.13e-12 | 65.5 |
| Msa0531950 | AT2G33170.1 | 41.860 | 86 | 48 | 2 | 61 | 144 | 971 | 1056 | 1.13e-12 | 65.5 |
| Msa0531950 | AT1G08590.1 | 39.216 | 102 | 58 | 3 | 61 | 159 | 873 | 973 | 2.28e-12 | 64.3 |
| Msa0531950 | AT2G02220.1 | 42.424 | 99 | 46 | 4 | 52 | 144 | 872 | 965 | 3.00e-12 | 64.3 |
| Msa0531950 | AT5G07620.1 | 34.545 | 110 | 68 | 2 | 61 | 166 | 223 | 332 | 5.15e-12 | 63.2 |
| Msa0531950 | AT5G62710.1 | 36.782 | 87 | 52 | 1 | 61 | 144 | 457 | 543 | 7.67e-12 | 62.8 |
| Msa0531950 | AT5G62710.2 | 36.782 | 87 | 52 | 1 | 61 | 144 | 423 | 509 | 8.42e-12 | 62.8 |
| Msa0531950 | AT5G65700.1 | 45.122 | 82 | 41 | 3 | 53 | 130 | 829 | 910 | 1.01e-11 | 62.8 |
| Msa0531950 | AT5G65700.2 | 45.122 | 82 | 41 | 3 | 53 | 130 | 829 | 910 | 1.01e-11 | 62.8 |
| Msa0531950 | AT1G69270.1 | 33.043 | 115 | 68 | 3 | 52 | 161 | 397 | 507 | 1.24e-11 | 62.4 |
| Msa0531950 | AT2G27060.1 | 37.736 | 106 | 55 | 4 | 45 | 144 | 867 | 967 | 2.47e-11 | 61.6 |
| Msa0531950 | AT4G39400.1 | 37.838 | 111 | 65 | 3 | 53 | 160 | 1020 | 1129 | 2.49e-11 | 61.6 |
| Msa0531950 | AT2G27060.3 | 37.736 | 106 | 55 | 4 | 45 | 144 | 774 | 874 | 3.55e-11 | 60.8 |
| Msa0531950 | AT1G78530.1 | 37.755 | 98 | 58 | 1 | 53 | 147 | 208 | 305 | 3.64e-11 | 60.8 |
| Msa0531950 | AT1G34420.1 | 36.559 | 93 | 56 | 2 | 69 | 160 | 847 | 937 | 7.82e-11 | 60.1 |
Find 39 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATATGCATGCTGCTAAA+AGG | 0.216626 | 4_1:-6032259 | Msa0531950:CDS |
| CAGCCTCGGTGTTATCCTTT+TGG | 0.248528 | 4_1:-6031424 | Msa0531950:CDS |
| CATATGTATGAATAACTTCT+AGG | 0.279849 | 4_1:+6032274 | None:intergenic |
| TTCCATGCACTATATTCTTT+TGG | 0.283746 | 4_1:+6031594 | None:intergenic |
| GACAAATGAAGTGTTTGATT+TGG | 0.323614 | 4_1:-6031316 | Msa0531950:CDS |
| TTCTTTGTCTTTGAAAGCTC+TGG | 0.341174 | 4_1:+6031471 | None:intergenic |
| ATGCCATTTGTTGGTTCTCC+TGG | 0.362960 | 4_1:+6031381 | None:intergenic |
| CATCCATTGTTAAAGAAGAA+TGG | 0.404547 | 4_1:-6031338 | Msa0531950:CDS |
| TTTAAGAAGTTCATCTCCTA+TGG | 0.410729 | 4_1:+6031272 | None:intergenic |
| GGCAAGTCCATGCCATTTGT+TGG | 0.425256 | 4_1:+6031372 | None:intergenic |
| CACCTCAAGCAACATACAAT+TGG | 0.458004 | 4_1:-6031567 | Msa0531950:CDS |
| TGTCCATTCTTCTTTAACAA+TGG | 0.458354 | 4_1:+6031335 | None:intergenic |
| ACAATGGATGCAACATATTG+AGG | 0.461356 | 4_1:+6031351 | None:intergenic |
| ACATATGCATGCTGCTAAAA+GGG | 0.472733 | 4_1:-6032258 | Msa0531950:CDS |
| ATTGCTACAGCAGGAAGTCT+TGG | 0.477792 | 4_1:-6031504 | Msa0531950:CDS |
| AGGGTACGGTGTTAACATAA+TGG | 0.485176 | 4_1:-6032239 | Msa0531950:CDS |
| AGAAGTTCATCTCCTATGGT+TGG | 0.529629 | 4_1:+6031276 | None:intergenic |
| TCCTGCTGTAGCAATGATGT+TGG | 0.533607 | 4_1:+6031512 | None:intergenic |
| GATTTGGAACTCATGAGGGA+TGG | 0.537502 | 4_1:-6031300 | Msa0531950:CDS |
| CCACCAGGAGAACCAACAAA+TGG | 0.539629 | 4_1:-6031384 | Msa0531950:CDS |
| ACCAACATCATTGCTACAGC+AGG | 0.542435 | 4_1:-6031513 | Msa0531950:CDS |
| CCATTTGTTGGTTCTCCTGG+TGG | 0.548920 | 4_1:+6031384 | None:intergenic |
| TACCAGTTAAGAGTTCCAAA+AGG | 0.550195 | 4_1:+6031409 | None:intergenic |
| TGTAGCAATGATGTTGGTGT+TGG | 0.550967 | 4_1:+6031518 | None:intergenic |
| AACCAAAAGAATATAGTGCA+TGG | 0.563084 | 4_1:-6031596 | Msa0531950:CDS |
| CTCTTAACTGGTAAACCACC+AGG | 0.563734 | 4_1:-6031399 | Msa0531950:CDS |
| TGTTTGATTTGGAACTCATG+AGG | 0.576156 | 4_1:-6031305 | Msa0531950:CDS |
| TGAATAACTTCTAGGATGCA+TGG | 0.577769 | 4_1:+6032282 | None:intergenic |
| AAAACCGACGTTTACAGCCT+CGG | 0.583782 | 4_1:-6031438 | Msa0531950:CDS |
| TGCATGCTGCTAAAAGGGTA+CGG | 0.588232 | 4_1:-6032253 | Msa0531950:CDS |
| AGGAGAACCAACAAATGGCA+TGG | 0.605960 | 4_1:-6031379 | Msa0531950:CDS |
| ATGAGGGATGGACCAACCAT+AGG | 0.609052 | 4_1:-6031288 | Msa0531950:CDS |
| ATAGCAATTGGAATCGCCAA+TGG | 0.612433 | 4_1:-6031635 | Msa0531950:intron |
| GTGGAGGCAAGAGAGACCAT+TGG | 0.612548 | 4_1:+6031619 | None:intergenic |
| GTTTGATTTGGAACTCATGA+GGG | 0.628775 | 4_1:-6031304 | Msa0531950:CDS |
| GACCAATTGTATGTTGCTTG+AGG | 0.629446 | 4_1:+6031565 | None:intergenic |
| ACTGAAACTGTGATATGCTG+AGG | 0.701627 | 4_1:+6032213 | None:intergenic |
| AACACCGAGGCTGTAAACGT+CGG | 0.738905 | 4_1:+6031434 | None:intergenic |
| GTTCCAAAAGGATAACACCG+AGG | 0.781912 | 4_1:+6031421 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAACTTTGTATTATAATTT+TGG | - | chr4_1:6031545-6031564 | Msa0531950:CDS | 15.0% |
| !!! | TCAACTTTGTATTATAATTT+TGG | - | chr4_1:6031545-6031564 | Msa0531950:CDS | 15.0% |
| !! | TTATGGACATTTATTAATGT+TGG | - | chr4_1:6031659-6031678 | Msa0531950:intron | 20.0% |
| !!! | AATGTTTTCTAAGTAAGTTT+TGG | + | chr4_1:6031763-6031782 | None:intergenic | 20.0% |
| !! | TTATGGACATTTATTAATGT+TGG | - | chr4_1:6031659-6031678 | Msa0531950:intron | 20.0% |
| !!! | AATGTTTTCTAAGTAAGTTT+TGG | + | chr4_1:6031763-6031782 | None:intergenic | 20.0% |
| ! | CATATGTATGAATAACTTCT+AGG | + | chr4_1:6031260-6031279 | None:intergenic | 25.0% |
| !! | GAAATATTTCAAGTAGAATC+AGG | + | chr4_1:6031359-6031378 | None:intergenic | 25.0% |
| ! | TCTACTTGAAATATTTCAAG+AGG | - | chr4_1:6031362-6031381 | Msa0531950:CDS | 25.0% |
| ! | AAATATTTCAAGAGGAATTG+AGG | - | chr4_1:6031370-6031389 | Msa0531950:CDS | 25.0% |
| ! | AGTATAACAATCATATGATC+TGG | + | chr4_1:6031595-6031614 | None:intergenic | 25.0% |
| ! | CATTTATTAATGTTGGAACA+TGG | - | chr4_1:6031666-6031685 | Msa0531950:intron | 25.0% |
| ! | CATATGTATGAATAACTTCT+AGG | + | chr4_1:6031260-6031279 | None:intergenic | 25.0% |
| !! | GAAATATTTCAAGTAGAATC+AGG | + | chr4_1:6031359-6031378 | None:intergenic | 25.0% |
| ! | TCTACTTGAAATATTTCAAG+AGG | - | chr4_1:6031362-6031381 | Msa0531950:CDS | 25.0% |
| ! | AAATATTTCAAGAGGAATTG+AGG | - | chr4_1:6031370-6031389 | Msa0531950:CDS | 25.0% |
| ! | AGTATAACAATCATATGATC+TGG | + | chr4_1:6031595-6031614 | None:intergenic | 25.0% |
| ! | CATTTATTAATGTTGGAACA+TGG | - | chr4_1:6031666-6031685 | Msa0531950:intron | 25.0% |
| ! | TTGTTGATTATATGTTCCAG+AGG | - | chr4_1:6031501-6031520 | Msa0531950:CDS | 30.0% |
| ACTATCCAATCTTGATACAA+AGG | - | chr4_1:6031689-6031708 | Msa0531950:intron | 30.0% | |
| !!! | AGTAAGTTTTGGTTTACTTG+CGG | + | chr4_1:6031752-6031771 | None:intergenic | 30.0% |
| !!! | TTGCTATTTTCATCCTTGTT+GGG | + | chr4_1:6031883-6031902 | None:intergenic | 30.0% |
| !!! | ATTGCTATTTTCATCCTTGT+TGG | + | chr4_1:6031884-6031903 | None:intergenic | 30.0% |
| ACAAGGATGAAAATAGCAAT+TGG | - | chr4_1:6031884-6031903 | Msa0531950:intron | 30.0% | |
| AACCAAAAGAATATAGTGCA+TGG | - | chr4_1:6031935-6031954 | Msa0531950:intron | 30.0% | |
| ! | TTCCATGCACTATATTCTTT+TGG | + | chr4_1:6031940-6031959 | None:intergenic | 30.0% |
| CATCCATTGTTAAAGAAGAA+TGG | - | chr4_1:6032193-6032212 | Msa0531950:intron | 30.0% | |
| TGTCCATTCTTCTTTAACAA+TGG | + | chr4_1:6032199-6032218 | None:intergenic | 30.0% | |
| ! | GACAAATGAAGTGTTTGATT+TGG | - | chr4_1:6032215-6032234 | Msa0531950:CDS | 30.0% |
| TTTAAGAAGTTCATCTCCTA+TGG | + | chr4_1:6032262-6032281 | None:intergenic | 30.0% | |
| ! | TTGTTGATTATATGTTCCAG+AGG | - | chr4_1:6031501-6031520 | Msa0531950:CDS | 30.0% |
| ACTATCCAATCTTGATACAA+AGG | - | chr4_1:6031689-6031708 | Msa0531950:intron | 30.0% | |
| !!! | AGTAAGTTTTGGTTTACTTG+CGG | + | chr4_1:6031752-6031771 | None:intergenic | 30.0% |
| !!! | TTGCTATTTTCATCCTTGTT+GGG | + | chr4_1:6031883-6031902 | None:intergenic | 30.0% |
| !!! | ATTGCTATTTTCATCCTTGT+TGG | + | chr4_1:6031884-6031903 | None:intergenic | 30.0% |
| ACAAGGATGAAAATAGCAAT+TGG | - | chr4_1:6031884-6031903 | Msa0531950:intron | 30.0% | |
| AACCAAAAGAATATAGTGCA+TGG | - | chr4_1:6031935-6031954 | Msa0531950:intron | 30.0% | |
| ! | TTCCATGCACTATATTCTTT+TGG | + | chr4_1:6031940-6031959 | None:intergenic | 30.0% |
| CATCCATTGTTAAAGAAGAA+TGG | - | chr4_1:6032193-6032212 | Msa0531950:intron | 30.0% | |
| TGTCCATTCTTCTTTAACAA+TGG | + | chr4_1:6032199-6032218 | None:intergenic | 30.0% | |
| ! | GACAAATGAAGTGTTTGATT+TGG | - | chr4_1:6032215-6032234 | Msa0531950:CDS | 30.0% |
| TTTAAGAAGTTCATCTCCTA+TGG | + | chr4_1:6032262-6032281 | None:intergenic | 30.0% | |
| TACATATGCATGCTGCTAAA+AGG | - | chr4_1:6031272-6031291 | Msa0531950:CDS | 35.0% | |
| ACATATGCATGCTGCTAAAA+GGG | - | chr4_1:6031273-6031292 | Msa0531950:CDS | 35.0% | |
| ! | AATTTTGGACAATCCGATCT+TGG | - | chr4_1:6031560-6031579 | Msa0531950:CDS | 35.0% |
| GAAGACAGATATTCCATCTT+TGG | - | chr4_1:6031629-6031648 | Msa0531950:CDS | 35.0% | |
| CCATAACGATAATCCAAAGA+TGG | + | chr4_1:6031645-6031664 | None:intergenic | 35.0% | |
| CCATCTTTGGATTATCGTTA+TGG | - | chr4_1:6031642-6031661 | Msa0531950:intron | 35.0% | |
| CTAGACCTTTGTATCAAGAT+TGG | + | chr4_1:6031697-6031716 | None:intergenic | 35.0% | |
| GAAGCTTCTGTAACTGAAAT+CGG | - | chr4_1:6031847-6031866 | Msa0531950:intron | 35.0% | |
| ! | TAACTGAAATCGGTTTCGAA+TGG | - | chr4_1:6031857-6031876 | Msa0531950:intron | 35.0% |
| !! | CTATATTCTTTTGGTTGTGG+AGG | + | chr4_1:6031931-6031950 | None:intergenic | 35.0% |
| !! | GCACTATATTCTTTTGGTTG+TGG | + | chr4_1:6031934-6031953 | None:intergenic | 35.0% |
| ! | TTCTTTGTCTTTGAAAGCTC+TGG | + | chr4_1:6032063-6032082 | None:intergenic | 35.0% |
| !!! | ATCCTTTTGGAACTCTTAAC+TGG | - | chr4_1:6032120-6032139 | Msa0531950:intron | 35.0% |
| TACCAGTTAAGAGTTCCAAA+AGG | + | chr4_1:6032125-6032144 | None:intergenic | 35.0% | |
| ACAATGGATGCAACATATTG+AGG | + | chr4_1:6032183-6032202 | None:intergenic | 35.0% | |
| !! | TGTTTGATTTGGAACTCATG+AGG | - | chr4_1:6032226-6032245 | Msa0531950:CDS | 35.0% |
| !! | GTTTGATTTGGAACTCATGA+GGG | - | chr4_1:6032227-6032246 | Msa0531950:CDS | 35.0% |
| TACATATGCATGCTGCTAAA+AGG | - | chr4_1:6031272-6031291 | Msa0531950:CDS | 35.0% | |
| ACATATGCATGCTGCTAAAA+GGG | - | chr4_1:6031273-6031292 | Msa0531950:CDS | 35.0% | |
| ! | AATTTTGGACAATCCGATCT+TGG | - | chr4_1:6031560-6031579 | Msa0531950:CDS | 35.0% |
| GAAGACAGATATTCCATCTT+TGG | - | chr4_1:6031629-6031648 | Msa0531950:CDS | 35.0% | |
| CCATAACGATAATCCAAAGA+TGG | + | chr4_1:6031645-6031664 | None:intergenic | 35.0% | |
| CCATCTTTGGATTATCGTTA+TGG | - | chr4_1:6031642-6031661 | Msa0531950:intron | 35.0% | |
| CTAGACCTTTGTATCAAGAT+TGG | + | chr4_1:6031697-6031716 | None:intergenic | 35.0% | |
| GAAGCTTCTGTAACTGAAAT+CGG | - | chr4_1:6031847-6031866 | Msa0531950:intron | 35.0% | |
| ! | TAACTGAAATCGGTTTCGAA+TGG | - | chr4_1:6031857-6031876 | Msa0531950:intron | 35.0% |
| !! | CTATATTCTTTTGGTTGTGG+AGG | + | chr4_1:6031931-6031950 | None:intergenic | 35.0% |
| !! | GCACTATATTCTTTTGGTTG+TGG | + | chr4_1:6031934-6031953 | None:intergenic | 35.0% |
| ! | TTCTTTGTCTTTGAAAGCTC+TGG | + | chr4_1:6032063-6032082 | None:intergenic | 35.0% |
| !!! | ATCCTTTTGGAACTCTTAAC+TGG | - | chr4_1:6032120-6032139 | Msa0531950:intron | 35.0% |
| TACCAGTTAAGAGTTCCAAA+AGG | + | chr4_1:6032125-6032144 | None:intergenic | 35.0% | |
| ACAATGGATGCAACATATTG+AGG | + | chr4_1:6032183-6032202 | None:intergenic | 35.0% | |
| !! | TGTTTGATTTGGAACTCATG+AGG | - | chr4_1:6032226-6032245 | Msa0531950:CDS | 35.0% |
| !! | GTTTGATTTGGAACTCATGA+GGG | - | chr4_1:6032227-6032246 | Msa0531950:CDS | 35.0% |
| ! | AGGGTACGGTGTTAACATAA+TGG | - | chr4_1:6031292-6031311 | Msa0531950:CDS | 40.0% |
| ACTGAAACTGTGATATGCTG+AGG | + | chr4_1:6031321-6031340 | None:intergenic | 40.0% | |
| TCCAGAGGATCATGATTAGA+AGG | - | chr4_1:6031516-6031535 | Msa0531950:CDS | 40.0% | |
| ACAATCCGATCTTGGTTCAA+TGG | - | chr4_1:6031568-6031587 | Msa0531950:CDS | 40.0% | |
| AATCACGCAATCATGTGATC+TGG | + | chr4_1:6031723-6031742 | None:intergenic | 40.0% | |
| !!! | GTTTTGGTTTACTTGCGGTT+AGG | + | chr4_1:6031747-6031766 | None:intergenic | 40.0% |
| ATAGCAATTGGAATCGCCAA+TGG | - | chr4_1:6031896-6031915 | Msa0531950:intron | 40.0% | |
| CACCTCAAGCAACATACAAT+TGG | - | chr4_1:6031964-6031983 | Msa0531950:intron | 40.0% | |
| ! | GACCAATTGTATGTTGCTTG+AGG | + | chr4_1:6031969-6031988 | None:intergenic | 40.0% |
| TGTAGCAATGATGTTGGTGT+TGG | + | chr4_1:6032016-6032035 | None:intergenic | 40.0% | |
| !!! | TAAACGTCGGTTTTTGTCGT+AGG | + | chr4_1:6032087-6032106 | None:intergenic | 40.0% |
| AGAAGTTCATCTCCTATGGT+TGG | + | chr4_1:6032258-6032277 | None:intergenic | 40.0% | |
| ! | AGGGTACGGTGTTAACATAA+TGG | - | chr4_1:6031292-6031311 | Msa0531950:CDS | 40.0% |
| ACTGAAACTGTGATATGCTG+AGG | + | chr4_1:6031321-6031340 | None:intergenic | 40.0% | |
| TCCAGAGGATCATGATTAGA+AGG | - | chr4_1:6031516-6031535 | Msa0531950:CDS | 40.0% | |
| ACAATCCGATCTTGGTTCAA+TGG | - | chr4_1:6031568-6031587 | Msa0531950:CDS | 40.0% | |
| AATCACGCAATCATGTGATC+TGG | + | chr4_1:6031723-6031742 | None:intergenic | 40.0% | |
| !!! | GTTTTGGTTTACTTGCGGTT+AGG | + | chr4_1:6031747-6031766 | None:intergenic | 40.0% |
| ATAGCAATTGGAATCGCCAA+TGG | - | chr4_1:6031896-6031915 | Msa0531950:intron | 40.0% | |
| CACCTCAAGCAACATACAAT+TGG | - | chr4_1:6031964-6031983 | Msa0531950:intron | 40.0% | |
| ! | GACCAATTGTATGTTGCTTG+AGG | + | chr4_1:6031969-6031988 | None:intergenic | 40.0% |
| TGTAGCAATGATGTTGGTGT+TGG | + | chr4_1:6032016-6032035 | None:intergenic | 40.0% | |
| !!! | TAAACGTCGGTTTTTGTCGT+AGG | + | chr4_1:6032087-6032106 | None:intergenic | 40.0% |
| AGAAGTTCATCTCCTATGGT+TGG | + | chr4_1:6032258-6032277 | None:intergenic | 40.0% | |
| TGCATGCTGCTAAAAGGGTA+CGG | - | chr4_1:6031278-6031297 | Msa0531950:CDS | 45.0% | |
| GCCTTCTAATCATGATCCTC+TGG | + | chr4_1:6031520-6031539 | None:intergenic | 45.0% | |
| CTGGACCATTGAACCAAGAT+CGG | + | chr4_1:6031576-6031595 | None:intergenic | 45.0% | |
| ACCAACATCATTGCTACAGC+AGG | - | chr4_1:6032018-6032037 | Msa0531950:intron | 45.0% | |
| TCCTGCTGTAGCAATGATGT+TGG | + | chr4_1:6032022-6032041 | None:intergenic | 45.0% | |
| ATTGCTACAGCAGGAAGTCT+TGG | - | chr4_1:6032027-6032046 | Msa0531950:intron | 45.0% | |
| AAAACCGACGTTTACAGCCT+CGG | - | chr4_1:6032093-6032112 | Msa0531950:intron | 45.0% | |
| GTTCCAAAAGGATAACACCG+AGG | + | chr4_1:6032113-6032132 | None:intergenic | 45.0% | |
| CTCTTAACTGGTAAACCACC+AGG | - | chr4_1:6032132-6032151 | Msa0531950:intron | 45.0% | |
| !! | ATGCCATTTGTTGGTTCTCC+TGG | + | chr4_1:6032153-6032172 | None:intergenic | 45.0% |
| AGGAGAACCAACAAATGGCA+TGG | - | chr4_1:6032152-6032171 | Msa0531950:intron | 45.0% | |
| ! | GATTTGGAACTCATGAGGGA+TGG | - | chr4_1:6032231-6032250 | Msa0531950:CDS | 45.0% |
| TGCATGCTGCTAAAAGGGTA+CGG | - | chr4_1:6031278-6031297 | Msa0531950:CDS | 45.0% | |
| GCCTTCTAATCATGATCCTC+TGG | + | chr4_1:6031520-6031539 | None:intergenic | 45.0% | |
| CTGGACCATTGAACCAAGAT+CGG | + | chr4_1:6031576-6031595 | None:intergenic | 45.0% | |
| ACCAACATCATTGCTACAGC+AGG | - | chr4_1:6032018-6032037 | Msa0531950:intron | 45.0% | |
| TCCTGCTGTAGCAATGATGT+TGG | + | chr4_1:6032022-6032041 | None:intergenic | 45.0% | |
| ATTGCTACAGCAGGAAGTCT+TGG | - | chr4_1:6032027-6032046 | Msa0531950:intron | 45.0% | |
| AAAACCGACGTTTACAGCCT+CGG | - | chr4_1:6032093-6032112 | Msa0531950:intron | 45.0% | |
| GTTCCAAAAGGATAACACCG+AGG | + | chr4_1:6032113-6032132 | None:intergenic | 45.0% | |
| CTCTTAACTGGTAAACCACC+AGG | - | chr4_1:6032132-6032151 | Msa0531950:intron | 45.0% | |
| !! | ATGCCATTTGTTGGTTCTCC+TGG | + | chr4_1:6032153-6032172 | None:intergenic | 45.0% |
| AGGAGAACCAACAAATGGCA+TGG | - | chr4_1:6032152-6032171 | Msa0531950:intron | 45.0% | |
| ! | GATTTGGAACTCATGAGGGA+TGG | - | chr4_1:6032231-6032250 | Msa0531950:CDS | 45.0% |
| AACACCGAGGCTGTAAACGT+CGG | + | chr4_1:6032100-6032119 | None:intergenic | 50.0% | |
| !!! | CAGCCTCGGTGTTATCCTTT+TGG | - | chr4_1:6032107-6032126 | Msa0531950:intron | 50.0% |
| !! | CCATTTGTTGGTTCTCCTGG+TGG | + | chr4_1:6032150-6032169 | None:intergenic | 50.0% |
| CCACCAGGAGAACCAACAAA+TGG | - | chr4_1:6032147-6032166 | Msa0531950:intron | 50.0% | |
| ! | GGCAAGTCCATGCCATTTGT+TGG | + | chr4_1:6032162-6032181 | None:intergenic | 50.0% |
| ATGAGGGATGGACCAACCAT+AGG | - | chr4_1:6032243-6032262 | Msa0531950:CDS | 50.0% | |
| AACACCGAGGCTGTAAACGT+CGG | + | chr4_1:6032100-6032119 | None:intergenic | 50.0% | |
| !!! | CAGCCTCGGTGTTATCCTTT+TGG | - | chr4_1:6032107-6032126 | Msa0531950:intron | 50.0% |
| !! | CCATTTGTTGGTTCTCCTGG+TGG | + | chr4_1:6032150-6032169 | None:intergenic | 50.0% |
| CCACCAGGAGAACCAACAAA+TGG | - | chr4_1:6032147-6032166 | Msa0531950:intron | 50.0% | |
| ! | GGCAAGTCCATGCCATTTGT+TGG | + | chr4_1:6032162-6032181 | None:intergenic | 50.0% |
| ATGAGGGATGGACCAACCAT+AGG | - | chr4_1:6032243-6032262 | Msa0531950:CDS | 50.0% | |
| CGGTTTCGAATGGCCCAACA+AGG | - | chr4_1:6031867-6031886 | Msa0531950:intron | 55.0% | |
| GTGGAGGCAAGAGAGACCAT+TGG | + | chr4_1:6031915-6031934 | None:intergenic | 55.0% | |
| CGGTTTCGAATGGCCCAACA+AGG | - | chr4_1:6031867-6031886 | Msa0531950:intron | 55.0% | |
| GTGGAGGCAAGAGAGACCAT+TGG | + | chr4_1:6031915-6031934 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 6031251 | 6032302 | 6031251 | ID=Msa0531950;Name=Msa0531950 |
| chr4_1 | mRNA | 6031251 | 6032302 | 6031251 | ID=Msa0531950-mRNA-1;Parent=Msa0531950;Name=Msa0531950-mRNA-1;_AED=0.48;_eAED=0.55;_QI=0|0|0|1|0|0|2|0|166 |
| chr4_1 | exon | 6032205 | 6032302 | 6032205 | ID=Msa0531950-mRNA-1:exon:2117;Parent=Msa0531950-mRNA-1 |
| chr4_1 | exon | 6031251 | 6031653 | 6031251 | ID=Msa0531950-mRNA-1:exon:2116;Parent=Msa0531950-mRNA-1 |
| chr4_1 | CDS | 6032205 | 6032302 | 6032205 | ID=Msa0531950-mRNA-1:cds;Parent=Msa0531950-mRNA-1 |
| chr4_1 | CDS | 6031251 | 6031653 | 6031251 | ID=Msa0531950-mRNA-1:cds;Parent=Msa0531950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
