Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532530 | XP_012569925.1 | 49.301 | 286 | 92 | 5 | 22 | 258 | 12 | 293 | 1.64e-76 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532530 | A0A1S3E2F0 | 49.301 | 286 | 92 | 5 | 22 | 258 | 12 | 293 | 7.85e-77 | 244 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0532530 | TR | ARID |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532530 | MtrunA17_Chr1g0192841 | 56.250 | 160 | 35 | 2 | 133 | 258 | 74 | 232 | 3.11e-53 | 172 |
| Msa0532530 | MtrunA17_Chr5g0445971 | 56.522 | 138 | 47 | 4 | 6 | 138 | 9 | 138 | 2.12e-41 | 140 |
| Msa0532530 | MtrunA17_Chr5g0435401 | 62.245 | 98 | 37 | 0 | 30 | 127 | 40 | 137 | 1.74e-36 | 133 |
| Msa0532530 | MtrunA17_Chr5g0435401 | 57.609 | 92 | 36 | 1 | 123 | 211 | 190 | 281 | 1.38e-26 | 106 |
| Msa0532530 | MtrunA17_Chr5g0435401 | 50.365 | 137 | 54 | 6 | 123 | 252 | 266 | 395 | 1.60e-26 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTAAGTATCGAAATAAAC+TGG | 0.303192 | 4_1:+6676333 | None:intergenic |
| AACGTTACCATAGGTGAGTT+TGG | 0.366922 | 4_1:+6677696 | None:intergenic |
| TTTGAGAAATTGTACTTCTC+TGG | 0.372455 | 4_1:-6676997 | Msa0532530:CDS |
| ACAAAAGAGTAATTTGTTAG+AGG | 0.388722 | 4_1:+6676420 | None:intergenic |
| CAGAAAATGCCTCGTCTGTC+CGG | 0.397968 | 4_1:-6676468 | Msa0532530:CDS |
| GTAAAGCAGATACAAGTCTA+AGG | 0.401467 | 4_1:+6677332 | None:intergenic |
| GATGTCTGTCGACGCTAAAC+AGG | 0.415004 | 4_1:-6676670 | Msa0532530:intron |
| AGGTTGCTCTACAAAACAAA+TGG | 0.427597 | 4_1:-6677110 | Msa0532530:CDS |
| AAACGGCGAGGTGGTCCAAC+TGG | 0.434685 | 4_1:-6676804 | Msa0532530:CDS |
| GTCTCTGCACTGAAACTAGA+AGG | 0.436460 | 4_1:-6677078 | Msa0532530:CDS |
| CTGGTGAAAACCTCCTCTTC+TGG | 0.440306 | 4_1:+6677299 | None:intergenic |
| ATCGAAATAAACTGGGAAGA+AGG | 0.456327 | 4_1:+6676341 | None:intergenic |
| AGACTTGTATCTGCTTTACT+TGG | 0.470775 | 4_1:-6677328 | Msa0532530:CDS |
| TCGATTAAAAGCTCATGTTC+CGG | 0.480755 | 4_1:-6676742 | Msa0532530:CDS |
| AGAAGAGTATTGTTTCCCCT+TGG | 0.498879 | 4_1:+6677669 | None:intergenic |
| TACGCATGGCTATTGATGCT+TGG | 0.507330 | 4_1:-6676698 | Msa0532530:CDS |
| CTATGGTAACGTTGTGTCCA+AGG | 0.513836 | 4_1:-6677686 | Msa0532530:CDS |
| ACTCAAGTGTTGGATTCCAC+TGG | 0.519362 | 4_1:-6677622 | Msa0532530:CDS |
| TCGAAATAAACTGGGAAGAA+GGG | 0.522528 | 4_1:+6676342 | None:intergenic |
| TGTATAGAAGTATTGCAAAG+AGG | 0.532624 | 4_1:+6677022 | None:intergenic |
| CATTTCAAAAGCCACGTTCG+CGG | 0.533360 | 4_1:+6676386 | None:intergenic |
| TGTCAAAGTCACTCAAGTGT+TGG | 0.544849 | 4_1:-6677632 | Msa0532530:CDS |
| ACAAGTCTAAGGATGTTTCT+CGG | 0.546217 | 4_1:+6677343 | None:intergenic |
| GCTCATGTTCCGGACATAGT+TGG | 0.547344 | 4_1:-6676732 | Msa0532530:CDS |
| TACTTGGAAGTCACCAGAAG+AGG | 0.547711 | 4_1:-6677312 | Msa0532530:CDS |
| TCAGATGCCAAACTCACCTA+TGG | 0.549356 | 4_1:-6677703 | Msa0532530:CDS |
| ATGGCAAAGAAAAGAAGAAA+CGG | 0.560257 | 4_1:-6676821 | Msa0532530:CDS |
| GGTTGCTCTACAAAACAAAT+GGG | 0.562695 | 4_1:-6677109 | Msa0532530:CDS |
| TATGGTAACGTTGTGTCCAA+GGG | 0.564205 | 4_1:-6677685 | Msa0532530:CDS |
| ATATCAAATATTTCTCAAGC+AGG | 0.571118 | 4_1:-6676772 | Msa0532530:CDS |
| TGGTCTCTTAGATACCTTTG+GGG | 0.580404 | 4_1:+6676971 | None:intergenic |
| GGTCTCTTAGATACCTTTGG+GGG | 0.580925 | 4_1:+6676972 | None:intergenic |
| TGTTACACAGTTAGAGTCAC+CGG | 0.586551 | 4_1:+6676449 | None:intergenic |
| CTTGGACACAACGTTACCAT+AGG | 0.590341 | 4_1:+6677687 | None:intergenic |
| TTGGAAGTCACCAGAAGAGG+AGG | 0.590853 | 4_1:-6677309 | Msa0532530:CDS |
| TTTCATGTAGCCATATGTGG+AGG | 0.619171 | 4_1:-6676547 | Msa0532530:intron |
| CAACAACGCAGCCGCGAACG+TGG | 0.625266 | 4_1:-6676397 | Msa0532530:CDS |
| AAGCATCAATAGCCATGCGT+AGG | 0.630888 | 4_1:+6676700 | None:intergenic |
| AACAACACAGAAACAATGGA+AGG | 0.643932 | 4_1:-6677757 | None:intergenic |
| AATGGAAGGCAACAACACTA+CGG | 0.644784 | 4_1:-6677743 | Msa0532530:CDS |
| AAAGATGAAGGAAACAAACA+AGG | 0.649227 | 4_1:-6676517 | Msa0532530:CDS |
| AGTAAGTATCGAAATAAACT+GGG | 0.654348 | 4_1:+6676334 | None:intergenic |
| TGACATGAGATTGAAGCCAG+TGG | 0.658000 | 4_1:+6677606 | None:intergenic |
| GAAAAGAAGAAACGGCGAGG+TGG | 0.658094 | 4_1:-6676813 | Msa0532530:CDS |
| TTAGAGTCACCGGACAGACG+AGG | 0.678770 | 4_1:+6676459 | None:intergenic |
| ATGGTAACGTTGTGTCCAAG+GGG | 0.685604 | 4_1:-6677684 | Msa0532530:CDS |
| AAAGAAAAGAAGAAACGGCG+AGG | 0.733773 | 4_1:-6676816 | Msa0532530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAACAAATTAATAATACC+TGG | + | chr4_1:6676797-6676816 | None:intergenic | 20.0% |
| !!! | AATGCATGTGTATATATTTT+AGG | - | chr4_1:6676841-6676860 | Msa0532530:intron | 20.0% |
| !! | AATTTATCTTGAATGTTTCA+AGG | - | chr4_1:6676944-6676963 | Msa0532530:intron | 20.0% |
| !! | CATGAAAAAGTAATTAGAAA+TGG | + | chr4_1:6677514-6677533 | None:intergenic | 20.0% |
| !! | TACAACAAATTAATAATACC+TGG | + | chr4_1:6676797-6676816 | None:intergenic | 20.0% |
| !!! | AATGCATGTGTATATATTTT+AGG | - | chr4_1:6676841-6676860 | Msa0532530:intron | 20.0% |
| !! | AATTTATCTTGAATGTTTCA+AGG | - | chr4_1:6676944-6676963 | Msa0532530:intron | 20.0% |
| !! | CATGAAAAAGTAATTAGAAA+TGG | + | chr4_1:6677514-6677533 | None:intergenic | 20.0% |
| ! | CACACAAATTTAATCAAGAA+AGG | - | chr4_1:6676893-6676912 | Msa0532530:intron | 25.0% |
| ! | TTAATTTACAACTCATGATC+CGG | - | chr4_1:6677224-6677243 | Msa0532530:intron | 25.0% |
| ! | ATATCAAATATTTCTCAAGC+AGG | - | chr4_1:6677302-6677321 | Msa0532530:CDS | 25.0% |
| !!! | ACAAAAGAGTAATTTGTTAG+AGG | + | chr4_1:6677657-6677676 | None:intergenic | 25.0% |
| !!! | AGTAAGTATCGAAATAAACT+GGG | + | chr4_1:6677743-6677762 | None:intergenic | 25.0% |
| ! | CACACAAATTTAATCAAGAA+AGG | - | chr4_1:6676893-6676912 | Msa0532530:intron | 25.0% |
| ! | TTAATTTACAACTCATGATC+CGG | - | chr4_1:6677224-6677243 | Msa0532530:intron | 25.0% |
| ! | ATATCAAATATTTCTCAAGC+AGG | - | chr4_1:6677302-6677321 | Msa0532530:CDS | 25.0% |
| !!! | ACAAAAGAGTAATTTGTTAG+AGG | + | chr4_1:6677657-6677676 | None:intergenic | 25.0% |
| !!! | AGTAAGTATCGAAATAAACT+GGG | + | chr4_1:6677743-6677762 | None:intergenic | 25.0% |
| TTTGCATGCATTCAAAATCA+AGG | - | chr4_1:6676530-6676549 | Msa0532530:CDS | 30.0% | |
| !! | TGTATAGAAGTATTGCAAAG+AGG | + | chr4_1:6677055-6677074 | None:intergenic | 30.0% |
| TTTGAGAAATTGTACTTCTC+TGG | - | chr4_1:6677077-6677096 | Msa0532530:CDS | 30.0% | |
| GCATATAAGTAACCACAAAT+TGG | + | chr4_1:6677126-6677145 | None:intergenic | 30.0% | |
| ATGCTTGATATGAAGATGTT+TGG | - | chr4_1:6677180-6677199 | Msa0532530:intron | 30.0% | |
| ATGGCAAAGAAAAGAAGAAA+CGG | - | chr4_1:6677253-6677272 | Msa0532530:intron | 30.0% | |
| ! | ACATTTTTACCAACTATGTC+CGG | + | chr4_1:6677354-6677373 | None:intergenic | 30.0% |
| ATTTCAAACAAACCAAGTAG+AGG | + | chr4_1:6677488-6677507 | None:intergenic | 30.0% | |
| AAAGATGAAGGAAACAAACA+AGG | - | chr4_1:6677557-6677576 | Msa0532530:intron | 30.0% | |
| !! | CAGTAAGTATCGAAATAAAC+TGG | + | chr4_1:6677744-6677763 | None:intergenic | 30.0% |
| TTTGCATGCATTCAAAATCA+AGG | - | chr4_1:6676530-6676549 | Msa0532530:CDS | 30.0% | |
| !! | TGTATAGAAGTATTGCAAAG+AGG | + | chr4_1:6677055-6677074 | None:intergenic | 30.0% |
| TTTGAGAAATTGTACTTCTC+TGG | - | chr4_1:6677077-6677096 | Msa0532530:CDS | 30.0% | |
| GCATATAAGTAACCACAAAT+TGG | + | chr4_1:6677126-6677145 | None:intergenic | 30.0% | |
| ATGCTTGATATGAAGATGTT+TGG | - | chr4_1:6677180-6677199 | Msa0532530:intron | 30.0% | |
| ATGGCAAAGAAAAGAAGAAA+CGG | - | chr4_1:6677253-6677272 | Msa0532530:intron | 30.0% | |
| ! | ACATTTTTACCAACTATGTC+CGG | + | chr4_1:6677354-6677373 | None:intergenic | 30.0% |
| ATTTCAAACAAACCAAGTAG+AGG | + | chr4_1:6677488-6677507 | None:intergenic | 30.0% | |
| AAAGATGAAGGAAACAAACA+AGG | - | chr4_1:6677557-6677576 | Msa0532530:intron | 30.0% | |
| !! | CAGTAAGTATCGAAATAAAC+TGG | + | chr4_1:6677744-6677763 | None:intergenic | 30.0% |
| TCTTGTTGAGTTTAACATGC+AGG | - | chr4_1:6676592-6676611 | Msa0532530:intron | 35.0% | |
| CTTGTTGAGTTTAACATGCA+GGG | - | chr4_1:6676593-6676612 | Msa0532530:intron | 35.0% | |
| ACAAGTCTAAGGATGTTTCT+CGG | + | chr4_1:6676734-6676753 | None:intergenic | 35.0% | |
| GTAAAGCAGATACAAGTCTA+AGG | + | chr4_1:6676745-6676764 | None:intergenic | 35.0% | |
| AGACTTGTATCTGCTTTACT+TGG | - | chr4_1:6676746-6676765 | Msa0532530:CDS | 35.0% | |
| AGGTTGCTCTACAAAACAAA+TGG | - | chr4_1:6676964-6676983 | Msa0532530:intron | 35.0% | |
| GGTTGCTCTACAAAACAAAT+GGG | - | chr4_1:6676965-6676984 | Msa0532530:intron | 35.0% | |
| TTGGTCTCTTAGATACCTTT+GGG | + | chr4_1:6677107-6677126 | None:intergenic | 35.0% | |
| ! | ATTGGTCTCTTAGATACCTT+TGG | + | chr4_1:6677108-6677127 | None:intergenic | 35.0% |
| GTATCTAAGAGACCAATTTG+TGG | - | chr4_1:6677111-6677130 | Msa0532530:CDS | 35.0% | |
| ! | TTTTCTTTGCCATCTATGTC+CGG | + | chr4_1:6677246-6677265 | None:intergenic | 35.0% |
| !!! | TGATATCCACTTTTTCCAGT+TGG | + | chr4_1:6677288-6677307 | None:intergenic | 35.0% |
| TCGATTAAAAGCTCATGTTC+CGG | - | chr4_1:6677332-6677351 | Msa0532530:CDS | 35.0% | |
| !! | TTTTGCAATTAGCCTCTACT+TGG | - | chr4_1:6677473-6677492 | Msa0532530:intron | 35.0% |
| !! | CTTTTTCATGTAGCCATATG+TGG | - | chr4_1:6677524-6677543 | Msa0532530:intron | 35.0% |
| ! | TTTTTGCTTTCCTCCACATA+TGG | + | chr4_1:6677540-6677559 | None:intergenic | 35.0% |
| TCGAAATAAACTGGGAAGAA+GGG | + | chr4_1:6677735-6677754 | None:intergenic | 35.0% | |
| ATCGAAATAAACTGGGAAGA+AGG | + | chr4_1:6677736-6677755 | None:intergenic | 35.0% | |
| TCTTGTTGAGTTTAACATGC+AGG | - | chr4_1:6676592-6676611 | Msa0532530:intron | 35.0% | |
| CTTGTTGAGTTTAACATGCA+GGG | - | chr4_1:6676593-6676612 | Msa0532530:intron | 35.0% | |
| ACAAGTCTAAGGATGTTTCT+CGG | + | chr4_1:6676734-6676753 | None:intergenic | 35.0% | |
| GTAAAGCAGATACAAGTCTA+AGG | + | chr4_1:6676745-6676764 | None:intergenic | 35.0% | |
| AGACTTGTATCTGCTTTACT+TGG | - | chr4_1:6676746-6676765 | Msa0532530:CDS | 35.0% | |
| AGGTTGCTCTACAAAACAAA+TGG | - | chr4_1:6676964-6676983 | Msa0532530:intron | 35.0% | |
| GGTTGCTCTACAAAACAAAT+GGG | - | chr4_1:6676965-6676984 | Msa0532530:intron | 35.0% | |
| TTGGTCTCTTAGATACCTTT+GGG | + | chr4_1:6677107-6677126 | None:intergenic | 35.0% | |
| ! | ATTGGTCTCTTAGATACCTT+TGG | + | chr4_1:6677108-6677127 | None:intergenic | 35.0% |
| GTATCTAAGAGACCAATTTG+TGG | - | chr4_1:6677111-6677130 | Msa0532530:CDS | 35.0% | |
| ! | TTTTCTTTGCCATCTATGTC+CGG | + | chr4_1:6677246-6677265 | None:intergenic | 35.0% |
| !!! | TGATATCCACTTTTTCCAGT+TGG | + | chr4_1:6677288-6677307 | None:intergenic | 35.0% |
| TCGATTAAAAGCTCATGTTC+CGG | - | chr4_1:6677332-6677351 | Msa0532530:CDS | 35.0% | |
| !! | TTTTGCAATTAGCCTCTACT+TGG | - | chr4_1:6677473-6677492 | Msa0532530:intron | 35.0% |
| !! | CTTTTTCATGTAGCCATATG+TGG | - | chr4_1:6677524-6677543 | Msa0532530:intron | 35.0% |
| ! | TTTTTGCTTTCCTCCACATA+TGG | + | chr4_1:6677540-6677559 | None:intergenic | 35.0% |
| TCGAAATAAACTGGGAAGAA+GGG | + | chr4_1:6677735-6677754 | None:intergenic | 35.0% | |
| ATCGAAATAAACTGGGAAGA+AGG | + | chr4_1:6677736-6677755 | None:intergenic | 35.0% | |
| AACGTTACCATAGGTGAGTT+TGG | + | chr4_1:6676381-6676400 | None:intergenic | 40.0% | |
| ! | TATGGTAACGTTGTGTCCAA+GGG | - | chr4_1:6676389-6676408 | Msa0532530:CDS | 40.0% |
| !! | AGAAGAGTATTGTTTCCCCT+TGG | + | chr4_1:6676408-6676427 | None:intergenic | 40.0% |
| TGTCAAAGTCACTCAAGTGT+TGG | - | chr4_1:6676442-6676461 | Msa0532530:CDS | 40.0% | |
| TGGTCTCTTAGATACCTTTG+GGG | + | chr4_1:6677106-6677125 | None:intergenic | 40.0% | |
| AAAGAAAAGAAGAAACGGCG+AGG | - | chr4_1:6677258-6677277 | Msa0532530:intron | 40.0% | |
| TGGTAAAAATGTCCTACGCA+TGG | - | chr4_1:6677362-6677381 | Msa0532530:intron | 40.0% | |
| TTTCATGTAGCCATATGTGG+AGG | - | chr4_1:6677527-6677546 | Msa0532530:intron | 40.0% | |
| GGAGGAAAGCAAAAAGATGA+AGG | - | chr4_1:6677545-6677564 | Msa0532530:intron | 40.0% | |
| TGTTACACAGTTAGAGTCAC+CGG | + | chr4_1:6677628-6677647 | None:intergenic | 40.0% | |
| AACGTTACCATAGGTGAGTT+TGG | + | chr4_1:6676381-6676400 | None:intergenic | 40.0% | |
| ! | TATGGTAACGTTGTGTCCAA+GGG | - | chr4_1:6676389-6676408 | Msa0532530:CDS | 40.0% |
| !! | AGAAGAGTATTGTTTCCCCT+TGG | + | chr4_1:6676408-6676427 | None:intergenic | 40.0% |
| TGTCAAAGTCACTCAAGTGT+TGG | - | chr4_1:6676442-6676461 | Msa0532530:CDS | 40.0% | |
| TGGTCTCTTAGATACCTTTG+GGG | + | chr4_1:6677106-6677125 | None:intergenic | 40.0% | |
| AAAGAAAAGAAGAAACGGCG+AGG | - | chr4_1:6677258-6677277 | Msa0532530:intron | 40.0% | |
| TGGTAAAAATGTCCTACGCA+TGG | - | chr4_1:6677362-6677381 | Msa0532530:intron | 40.0% | |
| TTTCATGTAGCCATATGTGG+AGG | - | chr4_1:6677527-6677546 | Msa0532530:intron | 40.0% | |
| GGAGGAAAGCAAAAAGATGA+AGG | - | chr4_1:6677545-6677564 | Msa0532530:intron | 40.0% | |
| TGTTACACAGTTAGAGTCAC+CGG | + | chr4_1:6677628-6677647 | None:intergenic | 40.0% | |
| TCAGATGCCAAACTCACCTA+TGG | - | chr4_1:6676371-6676390 | Msa0532530:CDS | 45.0% | |
| CTTGGACACAACGTTACCAT+AGG | + | chr4_1:6676390-6676409 | None:intergenic | 45.0% | |
| ! | CTATGGTAACGTTGTGTCCA+AGG | - | chr4_1:6676388-6676407 | Msa0532530:CDS | 45.0% |
| ! | ATGGTAACGTTGTGTCCAAG+GGG | - | chr4_1:6676390-6676409 | Msa0532530:CDS | 45.0% |
| !! | ACTCAAGTGTTGGATTCCAC+TGG | - | chr4_1:6676452-6676471 | Msa0532530:CDS | 45.0% |
| TGACATGAGATTGAAGCCAG+TGG | + | chr4_1:6676471-6676490 | None:intergenic | 45.0% | |
| TACTTGGAAGTCACCAGAAG+AGG | - | chr4_1:6676762-6676781 | Msa0532530:CDS | 45.0% | |
| GTCTCTGCACTGAAACTAGA+AGG | - | chr4_1:6676996-6677015 | Msa0532530:CDS | 45.0% | |
| GGTCTCTTAGATACCTTTGG+GGG | + | chr4_1:6677105-6677124 | None:intergenic | 45.0% | |
| ACTCATGATCCGGACATAGA+TGG | - | chr4_1:6677234-6677253 | Msa0532530:intron | 45.0% | |
| AAGCATCAATAGCCATGCGT+AGG | + | chr4_1:6677377-6677396 | None:intergenic | 45.0% | |
| TACGCATGGCTATTGATGCT+TGG | - | chr4_1:6677376-6677395 | Msa0532530:intron | 45.0% | |
| CATTTCAAAAGCCACGTTCG+CGG | + | chr4_1:6677691-6677710 | None:intergenic | 45.0% | |
| TCAGATGCCAAACTCACCTA+TGG | - | chr4_1:6676371-6676390 | Msa0532530:CDS | 45.0% | |
| CTTGGACACAACGTTACCAT+AGG | + | chr4_1:6676390-6676409 | None:intergenic | 45.0% | |
| ! | CTATGGTAACGTTGTGTCCA+AGG | - | chr4_1:6676388-6676407 | Msa0532530:CDS | 45.0% |
| ! | ATGGTAACGTTGTGTCCAAG+GGG | - | chr4_1:6676390-6676409 | Msa0532530:CDS | 45.0% |
| !! | ACTCAAGTGTTGGATTCCAC+TGG | - | chr4_1:6676452-6676471 | Msa0532530:CDS | 45.0% |
| TGACATGAGATTGAAGCCAG+TGG | + | chr4_1:6676471-6676490 | None:intergenic | 45.0% | |
| TACTTGGAAGTCACCAGAAG+AGG | - | chr4_1:6676762-6676781 | Msa0532530:CDS | 45.0% | |
| GTCTCTGCACTGAAACTAGA+AGG | - | chr4_1:6676996-6677015 | Msa0532530:CDS | 45.0% | |
| GGTCTCTTAGATACCTTTGG+GGG | + | chr4_1:6677105-6677124 | None:intergenic | 45.0% | |
| ACTCATGATCCGGACATAGA+TGG | - | chr4_1:6677234-6677253 | Msa0532530:intron | 45.0% | |
| AAGCATCAATAGCCATGCGT+AGG | + | chr4_1:6677377-6677396 | None:intergenic | 45.0% | |
| TACGCATGGCTATTGATGCT+TGG | - | chr4_1:6677376-6677395 | Msa0532530:intron | 45.0% | |
| CATTTCAAAAGCCACGTTCG+CGG | + | chr4_1:6677691-6677710 | None:intergenic | 45.0% | |
| !!! | TATTATATATCATTTTTATT+TGG | - | chr4_1:6676643-6676662 | Msa0532530:intron | 5.0% |
| !!! | TATTATATATCATTTTTATT+TGG | - | chr4_1:6676643-6676662 | Msa0532530:intron | 5.0% |
| TTGGAAGTCACCAGAAGAGG+AGG | - | chr4_1:6676765-6676784 | Msa0532530:CDS | 50.0% | |
| CTGGTGAAAACCTCCTCTTC+TGG | + | chr4_1:6676778-6676797 | None:intergenic | 50.0% | |
| ! | CAGAAGAGGAGGTTTTCACC+AGG | - | chr4_1:6676776-6676795 | Msa0532530:CDS | 50.0% |
| GAAAAGAAGAAACGGCGAGG+TGG | - | chr4_1:6677261-6677280 | Msa0532530:intron | 50.0% | |
| GGTGGTCCAACTGGAAAAAG+TGG | - | chr4_1:6677279-6677298 | Msa0532530:intron | 50.0% | |
| GCTCATGTTCCGGACATAGT+TGG | - | chr4_1:6677342-6677361 | Msa0532530:CDS | 50.0% | |
| GATGTCTGTCGACGCTAAAC+AGG | - | chr4_1:6677404-6677423 | Msa0532530:intron | 50.0% | |
| CAGAAAATGCCTCGTCTGTC+CGG | - | chr4_1:6677606-6677625 | Msa0532530:intron | 50.0% | |
| TTGGAAGTCACCAGAAGAGG+AGG | - | chr4_1:6676765-6676784 | Msa0532530:CDS | 50.0% | |
| CTGGTGAAAACCTCCTCTTC+TGG | + | chr4_1:6676778-6676797 | None:intergenic | 50.0% | |
| ! | CAGAAGAGGAGGTTTTCACC+AGG | - | chr4_1:6676776-6676795 | Msa0532530:CDS | 50.0% |
| GAAAAGAAGAAACGGCGAGG+TGG | - | chr4_1:6677261-6677280 | Msa0532530:intron | 50.0% | |
| GGTGGTCCAACTGGAAAAAG+TGG | - | chr4_1:6677279-6677298 | Msa0532530:intron | 50.0% | |
| GCTCATGTTCCGGACATAGT+TGG | - | chr4_1:6677342-6677361 | Msa0532530:CDS | 50.0% | |
| GATGTCTGTCGACGCTAAAC+AGG | - | chr4_1:6677404-6677423 | Msa0532530:intron | 50.0% | |
| CAGAAAATGCCTCGTCTGTC+CGG | - | chr4_1:6677606-6677625 | Msa0532530:intron | 50.0% | |
| TACTTCTCTGGCACCCCCAA+AGG | - | chr4_1:6677089-6677108 | Msa0532530:CDS | 55.0% | |
| TTAGAGTCACCGGACAGACG+AGG | + | chr4_1:6677618-6677637 | None:intergenic | 55.0% | |
| TACTTCTCTGGCACCCCCAA+AGG | - | chr4_1:6677089-6677108 | Msa0532530:CDS | 55.0% | |
| TTAGAGTCACCGGACAGACG+AGG | + | chr4_1:6677618-6677637 | None:intergenic | 55.0% | |
| AAACGGCGAGGTGGTCCAAC+TGG | - | chr4_1:6677270-6677289 | Msa0532530:intron | 60.0% | |
| AAACGGCGAGGTGGTCCAAC+TGG | - | chr4_1:6677270-6677289 | Msa0532530:intron | 60.0% | |
| CAACAACGCAGCCGCGAACG+TGG | - | chr4_1:6677677-6677696 | Msa0532530:CDS | 65.0% | |
| CAACAACGCAGCCGCGAACG+TGG | - | chr4_1:6677677-6677696 | Msa0532530:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 6676332 | 6677764 | 6676332 | ID=Msa0532530;Name=Msa0532530 |
| chr4_1 | mRNA | 6676332 | 6677764 | 6676332 | ID=Msa0532530-mRNA-1;Parent=Msa0532530;Name=Msa0532530-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.8|1|1|5|0|258 |
| chr4_1 | exon | 6677610 | 6677764 | 6677610 | ID=Msa0532530-mRNA-1:exon:2382;Parent=Msa0532530-mRNA-1 |
| chr4_1 | exon | 6677299 | 6677374 | 6677299 | ID=Msa0532530-mRNA-1:exon:2381;Parent=Msa0532530-mRNA-1 |
| chr4_1 | exon | 6676986 | 6677130 | 6676986 | ID=Msa0532530-mRNA-1:exon:2380;Parent=Msa0532530-mRNA-1 |
| chr4_1 | exon | 6676671 | 6676843 | 6676671 | ID=Msa0532530-mRNA-1:exon:2379;Parent=Msa0532530-mRNA-1 |
| chr4_1 | exon | 6676332 | 6676559 | 6676332 | ID=Msa0532530-mRNA-1:exon:2378;Parent=Msa0532530-mRNA-1 |
| chr4_1 | CDS | 6677610 | 6677764 | 6677610 | ID=Msa0532530-mRNA-1:cds;Parent=Msa0532530-mRNA-1 |
| chr4_1 | CDS | 6677299 | 6677374 | 6677299 | ID=Msa0532530-mRNA-1:cds;Parent=Msa0532530-mRNA-1 |
| chr4_1 | CDS | 6676986 | 6677130 | 6676986 | ID=Msa0532530-mRNA-1:cds;Parent=Msa0532530-mRNA-1 |
| chr4_1 | CDS | 6676671 | 6676843 | 6676671 | ID=Msa0532530-mRNA-1:cds;Parent=Msa0532530-mRNA-1 |
| chr4_1 | CDS | 6676332 | 6676559 | 6676332 | ID=Msa0532530-mRNA-1:cds;Parent=Msa0532530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
