Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534130 | XP_013470448.1 | 81.728 | 405 | 9 | 4 | 78 | 417 | 97 | 501 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534130 | sp|B6TGN4|MTEF4_MAIZE | 41.519 | 395 | 164 | 5 | 77 | 406 | 92 | 484 | 4.74e-99 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534130 | A0A072VS35 | 81.728 | 405 | 9 | 4 | 78 | 417 | 97 | 501 | 0.0 | 600 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0534130 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534130 | MtrunA17_Chr1g0212691 | 81.728 | 405 | 9 | 4 | 78 | 417 | 97 | 501 | 0.0 | 600 |
| Msa0534130 | MtrunA17_Chr8g0391881 | 66.163 | 331 | 16 | 5 | 78 | 343 | 75 | 374 | 6.73e-129 | 376 |
| Msa0534130 | MtrunA17_Chr5g0428941 | 45.576 | 373 | 136 | 7 | 79 | 384 | 130 | 502 | 3.99e-97 | 300 |
| Msa0534130 | MtrunA17_Chr8g0391861 | 83.505 | 97 | 14 | 1 | 321 | 417 | 16 | 110 | 1.85e-40 | 140 |
| Msa0534130 | MtrunA17_Chr8g0391871 | 90.000 | 60 | 6 | 0 | 358 | 417 | 1 | 60 | 9.75e-31 | 112 |
| Msa0534130 | MtrunA17_Chr2g0294671 | 25.442 | 283 | 176 | 6 | 119 | 371 | 210 | 487 | 1.99e-23 | 102 |
| Msa0534130 | MtrunA17_Chr2g0294671 | 25.000 | 188 | 129 | 6 | 189 | 373 | 208 | 386 | 8.09e-12 | 67.0 |
| Msa0534130 | MtrunA17_Chr4g0034981 | 25.085 | 295 | 171 | 7 | 84 | 372 | 341 | 591 | 1.55e-21 | 97.1 |
| Msa0534130 | MtrunA17_Chr6g0448821 | 26.441 | 295 | 192 | 8 | 92 | 372 | 79 | 362 | 4.10e-21 | 94.4 |
| Msa0534130 | MtrunA17_Chr4g0043941 | 23.396 | 265 | 194 | 6 | 105 | 367 | 62 | 319 | 9.90e-20 | 89.7 |
| Msa0534130 | MtrunA17_Chr5g0445491 | 22.556 | 266 | 158 | 6 | 89 | 348 | 227 | 450 | 7.15e-13 | 70.1 |
| Msa0534130 | MtrunA17_Chr2g0311181 | 20.635 | 315 | 194 | 10 | 82 | 391 | 63 | 326 | 1.18e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534130 | AT2G44020.1 | 62.556 | 446 | 94 | 7 | 39 | 417 | 68 | 507 | 5.33e-180 | 511 |
| Msa0534130 | AT4G02990.2 | 45.135 | 370 | 132 | 6 | 79 | 380 | 138 | 504 | 9.37e-98 | 302 |
| Msa0534130 | AT4G02990.1 | 45.135 | 370 | 132 | 6 | 79 | 380 | 138 | 504 | 9.37e-98 | 302 |
| Msa0534130 | AT2G21710.1 | 25.680 | 331 | 224 | 9 | 81 | 402 | 309 | 626 | 9.99e-24 | 103 |
| Msa0534130 | AT2G21710.1 | 26.562 | 192 | 127 | 7 | 155 | 341 | 280 | 462 | 3.73e-11 | 65.5 |
| Msa0534130 | AT1G78930.1 | 27.437 | 277 | 154 | 7 | 98 | 372 | 349 | 580 | 1.06e-21 | 97.8 |
| Msa0534130 | AT4G38160.4 | 23.420 | 269 | 196 | 7 | 105 | 370 | 63 | 324 | 9.65e-21 | 92.8 |
| Msa0534130 | AT4G38160.1 | 23.420 | 269 | 196 | 7 | 105 | 370 | 63 | 324 | 9.65e-21 | 92.8 |
| Msa0534130 | AT4G38160.2 | 23.420 | 269 | 196 | 7 | 105 | 370 | 63 | 324 | 1.54e-20 | 92.8 |
| Msa0534130 | AT4G38160.3 | 23.420 | 269 | 196 | 7 | 105 | 370 | 63 | 324 | 1.84e-20 | 92.8 |
| Msa0534130 | AT4G14605.2 | 26.613 | 248 | 167 | 7 | 122 | 367 | 234 | 468 | 6.69e-18 | 85.9 |
| Msa0534130 | AT4G14605.1 | 26.613 | 248 | 167 | 7 | 122 | 367 | 234 | 468 | 6.69e-18 | 85.9 |
| Msa0534130 | AT5G54180.1 | 26.644 | 289 | 150 | 11 | 91 | 368 | 253 | 490 | 4.06e-13 | 71.2 |
| Msa0534130 | AT2G21710.2 | 24.710 | 259 | 175 | 8 | 81 | 330 | 309 | 556 | 3.38e-12 | 68.6 |
| Msa0534130 | AT2G21710.2 | 26.562 | 192 | 127 | 7 | 155 | 341 | 280 | 462 | 3.05e-11 | 65.5 |
| Msa0534130 | AT5G55580.2 | 22.566 | 226 | 165 | 5 | 124 | 346 | 117 | 335 | 1.01e-11 | 66.6 |
| Msa0534130 | AT2G21710.3 | 24.514 | 257 | 174 | 8 | 81 | 328 | 309 | 554 | 2.06e-11 | 66.2 |
| Msa0534130 | AT2G21710.3 | 26.562 | 192 | 127 | 7 | 155 | 341 | 280 | 462 | 2.89e-11 | 65.9 |
| Msa0534130 | AT5G55580.1 | 22.566 | 226 | 165 | 5 | 124 | 346 | 223 | 441 | 2.92e-11 | 65.5 |
| Msa0534130 | AT1G61970.2 | 23.718 | 312 | 190 | 9 | 105 | 378 | 105 | 406 | 8.18e-11 | 63.9 |
| Msa0534130 | AT1G61970.7 | 23.718 | 312 | 190 | 9 | 105 | 378 | 105 | 406 | 8.18e-11 | 63.9 |
| Msa0534130 | AT1G61970.6 | 23.718 | 312 | 190 | 9 | 105 | 378 | 105 | 406 | 8.18e-11 | 63.9 |
| Msa0534130 | AT1G61970.3 | 23.718 | 312 | 190 | 9 | 105 | 378 | 105 | 406 | 8.18e-11 | 63.9 |
| Msa0534130 | AT1G61970.5 | 23.718 | 312 | 190 | 9 | 105 | 378 | 105 | 406 | 8.18e-11 | 63.9 |
| Msa0534130 | AT1G61970.4 | 23.718 | 312 | 190 | 9 | 105 | 378 | 105 | 406 | 8.18e-11 | 63.9 |
| Msa0534130 | AT1G61970.1 | 23.718 | 312 | 190 | 9 | 105 | 378 | 105 | 406 | 8.18e-11 | 63.9 |
Find 99 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCAGTATCCTTTGATTT+TGG | 0.075546 | 4_1:+9472151 | Msa0534130:CDS |
| GTTGAGTTTATTCAGAAATT+AGG | 0.214945 | 4_1:+9472110 | Msa0534130:CDS |
| GCTCAGTATCCACAGATTAT+TGG | 0.226147 | 4_1:+9472675 | Msa0534130:CDS |
| CTCTTAAGCCTCTGGTATCT+TGG | 0.231121 | 4_1:-9473035 | None:intergenic |
| CTCAGTATCCACAGATTATT+GGG | 0.260746 | 4_1:+9472676 | Msa0534130:CDS |
| TCACTTATAGTTTGGAATCT+AGG | 0.287748 | 4_1:+9473006 | Msa0534130:CDS |
| TACCGAAGTGCGATGGTTCC+AGG | 0.289229 | 4_1:-9471923 | None:intergenic |
| AGAATACTTCACTTATAGTT+TGG | 0.295127 | 4_1:+9472998 | Msa0534130:CDS |
| GTTGATTGTTTGATTAGTTT+TGG | 0.307251 | 4_1:+9472621 | Msa0534130:CDS |
| GGATAAAGTGTTCATTGAAT+TGG | 0.316271 | 4_1:+9473063 | Msa0534130:CDS |
| GATTATTGGGTTGCCTCTTA+AGG | 0.318484 | 4_1:+9472689 | Msa0534130:CDS |
| TTAGTATTGGTGTTAATCAT+AGG | 0.320960 | 4_1:+9472435 | Msa0534130:CDS |
| CCTGGTATTAAGTTTCTTAG+AGG | 0.326385 | 4_1:+9472308 | Msa0534130:CDS |
| AGCTTAAACCCTAAAAGTTC+AGG | 0.348375 | 4_1:-9472377 | None:intergenic |
| ATGTAGAGAAAGATGATATT+GGG | 0.358260 | 4_1:+9472336 | Msa0534130:CDS |
| GAAGACAATTTAGCCTTAAG+AGG | 0.360188 | 4_1:-9472702 | None:intergenic |
| AAACTATAAGTGAAGTATTC+TGG | 0.362016 | 4_1:-9472996 | None:intergenic |
| TCAAAATGTGATTATGAAAC+CGG | 0.364444 | 4_1:+9472815 | Msa0534130:CDS |
| ATCTGAAACTATATCATTCC+CGG | 0.367449 | 4_1:-9473192 | None:intergenic |
| GATGTAGAGAAAGATGATAT+TGG | 0.374971 | 4_1:+9472335 | Msa0534130:CDS |
| TCCCCTTGCTCTTAAGCCTC+TGG | 0.375995 | 4_1:-9473043 | None:intergenic |
| GTGGCTTATCTTGTTAGTAT+TGG | 0.382878 | 4_1:+9472422 | Msa0534130:CDS |
| GAGATTTGAAGAGAGATTGC+AGG | 0.401297 | 4_1:+9473106 | Msa0534130:CDS |
| GAGAAAAGAGCTTATTTACT+TGG | 0.423672 | 4_1:+9472570 | Msa0534130:CDS |
| CTCATGACTTCAACGGTTGA+AGG | 0.424949 | 4_1:-9472080 | None:intergenic |
| ATGAGGTAGGAGAAGATTGT+AGG | 0.426445 | 4_1:-9471623 | None:intergenic |
| GGTGTTAATCATAGGGATAT+TGG | 0.431935 | 4_1:+9472443 | Msa0534130:CDS |
| GAGGAAGGAATGTTTGCTTT+CGG | 0.432146 | 4_1:+9472647 | Msa0534130:CDS |
| TCATAGGGATATTGGTCCTA+TGG | 0.435606 | 4_1:+9472451 | Msa0534130:CDS |
| GCAATCTCTCTTCAAATCTC+TGG | 0.437449 | 4_1:-9473103 | None:intergenic |
| TTGGTGGCGAGCTGCTTCCT+TGG | 0.444735 | 4_1:-9471732 | None:intergenic |
| ACCACCCTTGCAAACCCTTC+CGG | 0.446986 | 4_1:-9472762 | None:intergenic |
| ATAGGTCCTTCATTCTGTAT+TGG | 0.452739 | 4_1:+9473152 | Msa0534130:CDS |
| AAGATTGTAGGGACTGATTG+TGG | 0.453278 | 4_1:-9471611 | None:intergenic |
| TTAGGGTTGCCCTAGGATGC+TGG | 0.454659 | 4_1:+9472548 | Msa0534130:intron |
| AAACCTCACCGTTACCGTCC+TGG | 0.463835 | 4_1:+9471905 | Msa0534130:CDS |
| GTTATTGTTGAGCTTGCTCC+TGG | 0.464996 | 4_1:+9472290 | Msa0534130:CDS |
| TCCGGAAGGGTTTGCAAGGG+TGG | 0.482240 | 4_1:+9472761 | Msa0534130:CDS |
| ATACTGATTTATATCATCAA+TGG | 0.482461 | 4_1:-9472138 | None:intergenic |
| GGGATTTCTAGGTCTAAACT+TGG | 0.492563 | 4_1:+9472227 | Msa0534130:CDS |
| TAGTATTGGTGTTAATCATA+GGG | 0.492630 | 4_1:+9472436 | Msa0534130:CDS |
| GGTCCTTCATTCTGTATTGG+TGG | 0.495994 | 4_1:+9473155 | Msa0534130:CDS |
| GGAAGGGTTTGCAAGGGTGG+TGG | 0.497371 | 4_1:+9472764 | Msa0534130:CDS |
| TATAGTTTCAGATGAGGAAG+AGG | 0.497442 | 4_1:+9473202 | Msa0534130:CDS |
| TTTGAAGCTTAAGATTGATC+CGG | 0.506836 | 4_1:+9472743 | Msa0534130:CDS |
| GTTACGGTGGCGCGCGAGCA+AGG | 0.511956 | 4_1:-9471655 | None:intergenic |
| CGTCGGAGTTACGGAGGTTA+CGG | 0.513367 | 4_1:-9471671 | None:intergenic |
| AGATTGTAGGGACTGATTGT+GGG | 0.518374 | 4_1:-9471610 | None:intergenic |
| TGGGGTGAGGTGAGAACCAT+AGG | 0.523341 | 4_1:-9471591 | None:intergenic |
| TACCAGAGGCTTAAGAGCAA+GGG | 0.523803 | 4_1:+9473041 | Msa0534130:CDS |
| GGTTAATTTAGGGTTGCCCT+AGG | 0.524403 | 4_1:+9472541 | Msa0534130:intron |
| TATATCGAAACTGAAAGTAT+AGG | 0.528697 | 4_1:+9473134 | Msa0534130:CDS |
| AGGAAATCTGCTCCTACGAC+TGG | 0.534612 | 4_1:+9471872 | Msa0534130:intron |
| GTCCTTCATTCTGTATTGGT+GGG | 0.540317 | 4_1:+9473156 | Msa0534130:CDS |
| CCTCTAAGAAACTTAATACC+AGG | 0.540469 | 4_1:-9472308 | None:intergenic |
| TGAGGTAGGAGAAGATTGTA+GGG | 0.542877 | 4_1:-9471622 | None:intergenic |
| GCGAGCTGCTTCCTTGGAGT+CGG | 0.544281 | 4_1:-9471726 | None:intergenic |
| GTGAACGGTGGTTACCTTGG+TGG | 0.545269 | 4_1:-9471748 | None:intergenic |
| GGCAATACCATCACAGGATG+TGG | 0.549695 | 4_1:+9472857 | Msa0534130:CDS |
| GAGCAAGGTTGAGTCGTATG+AGG | 0.551138 | 4_1:-9471640 | None:intergenic |
| CGATGGTTCCAGGACGGTAA+CGG | 0.555090 | 4_1:-9471913 | None:intergenic |
| AGCTTAAGATTGATCCGGAA+GGG | 0.556415 | 4_1:+9472748 | Msa0534130:CDS |
| TAGGGACTGATTGTGGGGTG+AGG | 0.560148 | 4_1:-9471604 | None:intergenic |
| AGATTTGAAGAGAGATTGCA+GGG | 0.561148 | 4_1:+9473107 | Msa0534130:CDS |
| TTCCCACCAATACAGAATGA+AGG | 0.566084 | 4_1:-9473158 | None:intergenic |
| CTTCAACCGTTGAAGTCATG+AGG | 0.566630 | 4_1:+9472081 | Msa0534130:CDS |
| GCGGGATTGTGCCGACTCCA+AGG | 0.567001 | 4_1:+9471715 | Msa0534130:CDS |
| TTGATCCGGAAGGGTTTGCA+AGG | 0.567631 | 4_1:+9472757 | Msa0534130:CDS |
| ATACCAGAGGCTTAAGAGCA+AGG | 0.573793 | 4_1:+9473040 | Msa0534130:CDS |
| ACACTAGCATGCAAAACTTG+TGG | 0.577739 | 4_1:-9472269 | None:intergenic |
| ACGAAATTACCGAAGTGCGA+TGG | 0.580663 | 4_1:-9471930 | None:intergenic |
| GAGACCTGTAAAAGAGCTTG+TGG | 0.581965 | 4_1:+9472968 | Msa0534130:intron |
| ACGTTCCCTCATGACTTCAA+CGG | 0.586865 | 4_1:-9472087 | None:intergenic |
| AAGGTTGAGTCGTATGAGGT+AGG | 0.591096 | 4_1:-9471636 | None:intergenic |
| ACACTACAACCCAAAATCAA+AGG | 0.594517 | 4_1:-9472161 | None:intergenic |
| AAATCTGCTCCTACGACTGG+AGG | 0.596759 | 4_1:+9471875 | Msa0534130:CDS |
| TGGTAGGGCAATACCATCAC+AGG | 0.600567 | 4_1:+9472851 | Msa0534130:CDS |
| ACCAGAGGCTTAAGAGCAAG+GGG | 0.605082 | 4_1:+9473042 | Msa0534130:CDS |
| TCTGAAACTATATCATTCCC+GGG | 0.612098 | 4_1:-9473191 | None:intergenic |
| GTGGGAAATTAGAGCTACCC+GGG | 0.615038 | 4_1:+9473174 | Msa0534130:CDS |
| AAGCTTAAGATTGATCCGGA+AGG | 0.621599 | 4_1:+9472747 | Msa0534130:CDS |
| GGTGGGAAATTAGAGCTACC+CGG | 0.623613 | 4_1:+9473173 | Msa0534130:CDS |
| AGGTACTATGAGTACTTCAG+TGG | 0.624393 | 4_1:+9472403 | Msa0534130:CDS |
| AGAGGCAACCCAATAATCTG+TGG | 0.627647 | 4_1:-9472684 | None:intergenic |
| GGTGGTGGAGAAGATGCCAC+AGG | 0.628330 | 4_1:+9472779 | Msa0534130:CDS |
| TTCAACCGTTGAAGTCATGA+GGG | 0.641557 | 4_1:+9472082 | Msa0534130:CDS |
| ATACTAGCCACATCCTGTGA+TGG | 0.647825 | 4_1:-9472864 | None:intergenic |
| GTCCTGGAACCATCGCACTT+CGG | 0.650147 | 4_1:+9471921 | Msa0534130:CDS |
| TGATGAAGACTAACCACCTG+TGG | 0.651476 | 4_1:-9472795 | None:intergenic |
| TGATCCGGAAGGGTTTGCAA+GGG | 0.654444 | 4_1:+9472758 | Msa0534130:CDS |
| GATTGTAGGGACTGATTGTG+GGG | 0.656154 | 4_1:-9471609 | None:intergenic |
| GAATGATATAGTTTCAGATG+AGG | 0.656227 | 4_1:+9473196 | Msa0534130:CDS |
| AAACGACGTCGGAGTTACGG+AGG | 0.659101 | 4_1:-9471677 | None:intergenic |
| GTTCCAGGACGGTAACGGTG+AGG | 0.667543 | 4_1:-9471908 | None:intergenic |
| AAGGAAGCAGCTCGCCACCA+AGG | 0.670819 | 4_1:+9471734 | Msa0534130:CDS |
| GGTGGAGAAGATGCCACAGG+TGG | 0.679410 | 4_1:+9472782 | Msa0534130:CDS |
| CGGAGTTACGGAGGTTACGG+TGG | 0.696959 | 4_1:-9471668 | None:intergenic |
| GGATTAAACCAAGATACCAG+AGG | 0.704164 | 4_1:+9473027 | Msa0534130:CDS |
| GAAGTGCGATGGTTCCAGGA+CGG | 0.736012 | 4_1:-9471919 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGGATTCATAATTTT+GGG | + | chr4_1:9471992-9472011 | Msa0534130:intron | 15.0% |
| !!! | AATTTTGGATTCATAATTTT+GGG | + | chr4_1:9471992-9472011 | Msa0534130:intron | 15.0% |
| !! | TCTGAAAACCTAAAAAATTA+GGG | - | chr4_1:9471960-9471979 | None:intergenic | 20.0% |
| !!! | AGAGTTTTGAATTTGAATTT+TGG | + | chr4_1:9471977-9471996 | Msa0534130:intron | 20.0% |
| !!! | GAATTTTGGATTCATAATTT+TGG | + | chr4_1:9471991-9472010 | Msa0534130:intron | 20.0% |
| !!! | ATACTGATTTATATCATCAA+TGG | - | chr4_1:9472141-9472160 | None:intergenic | 20.0% |
| !!! | TTAGGGTATTTAGAAAAAAT+TGG | + | chr4_1:9472206-9472225 | Msa0534130:CDS | 20.0% |
| !!! | TAGGGTATTTAGAAAAAATT+GGG | + | chr4_1:9472207-9472226 | Msa0534130:CDS | 20.0% |
| !!! | AAAAATATCCTGAACTTTTA+GGG | + | chr4_1:9472369-9472388 | Msa0534130:CDS | 20.0% |
| !! | TTGATTACTTGGTTAATTTA+GGG | + | chr4_1:9472531-9472550 | Msa0534130:intron | 20.0% |
| !! | TTAATTCTTAAAAAGTGAGA+TGG | + | chr4_1:9472944-9472963 | Msa0534130:intron | 20.0% |
| !! | TAATTCTTAAAAAGTGAGAT+GGG | + | chr4_1:9472945-9472964 | Msa0534130:intron | 20.0% |
| !! | TCTGAAAACCTAAAAAATTA+GGG | - | chr4_1:9471960-9471979 | None:intergenic | 20.0% |
| !!! | AGAGTTTTGAATTTGAATTT+TGG | + | chr4_1:9471977-9471996 | Msa0534130:intron | 20.0% |
| !!! | GAATTTTGGATTCATAATTT+TGG | + | chr4_1:9471991-9472010 | Msa0534130:intron | 20.0% |
| !!! | ATACTGATTTATATCATCAA+TGG | - | chr4_1:9472141-9472160 | None:intergenic | 20.0% |
| !!! | TTAGGGTATTTAGAAAAAAT+TGG | + | chr4_1:9472206-9472225 | Msa0534130:CDS | 20.0% |
| !!! | TAGGGTATTTAGAAAAAATT+GGG | + | chr4_1:9472207-9472226 | Msa0534130:CDS | 20.0% |
| !!! | AAAAATATCCTGAACTTTTA+GGG | + | chr4_1:9472369-9472388 | Msa0534130:CDS | 20.0% |
| !! | TTGATTACTTGGTTAATTTA+GGG | + | chr4_1:9472531-9472550 | Msa0534130:intron | 20.0% |
| !! | TTAATTCTTAAAAAGTGAGA+TGG | + | chr4_1:9472944-9472963 | Msa0534130:intron | 20.0% |
| !! | TAATTCTTAAAAAGTGAGAT+GGG | + | chr4_1:9472945-9472964 | Msa0534130:intron | 20.0% |
| ! | CTGAAAACCTAAAAAATTAG+GGG | - | chr4_1:9471959-9471978 | None:intergenic | 25.0% |
| !! | CTCTGAAAACCTAAAAAATT+AGG | - | chr4_1:9471961-9471980 | None:intergenic | 25.0% |
| ! | GTTGAGTTTATTCAGAAATT+AGG | + | chr4_1:9472110-9472129 | Msa0534130:CDS | 25.0% |
| !!! | AAATCAGTATCCTTTGATTT+TGG | + | chr4_1:9472151-9472170 | Msa0534130:CDS | 25.0% |
| !!! | AATCAGTATCCTTTGATTTT+GGG | + | chr4_1:9472152-9472171 | Msa0534130:CDS | 25.0% |
| !! | AAAAACATGATTCCTGTTTT+AGG | + | chr4_1:9472188-9472207 | Msa0534130:CDS | 25.0% |
| !! | AAAACATGATTCCTGTTTTA+GGG | + | chr4_1:9472189-9472208 | Msa0534130:CDS | 25.0% |
| !! | TTTTCTAAATACCCTAAAAC+AGG | - | chr4_1:9472203-9472222 | None:intergenic | 25.0% |
| ! | TAGAAAAAATTGGGATTTCT+AGG | + | chr4_1:9472216-9472235 | Msa0534130:CDS | 25.0% |
| ! | ATGTAGAGAAAGATGATATT+GGG | + | chr4_1:9472336-9472355 | Msa0534130:CDS | 25.0% |
| !! | CAAAAATATCCTGAACTTTT+AGG | + | chr4_1:9472368-9472387 | Msa0534130:CDS | 25.0% |
| !!! | TTAGTATTGGTGTTAATCAT+AGG | + | chr4_1:9472435-9472454 | Msa0534130:CDS | 25.0% |
| !!! | TAGTATTGGTGTTAATCATA+GGG | + | chr4_1:9472436-9472455 | Msa0534130:CDS | 25.0% |
| !!! | ACACAGTATCCTTATTTTTT+AGG | + | chr4_1:9472476-9472495 | Msa0534130:intron | 25.0% |
| !!! | CACAGTATCCTTATTTTTTA+GGG | + | chr4_1:9472477-9472496 | Msa0534130:intron | 25.0% |
| ! | GTTGATTACTTGGTTAATTT+AGG | + | chr4_1:9472530-9472549 | Msa0534130:intron | 25.0% |
| !!! | GTTGATTGTTTGATTAGTTT+TGG | + | chr4_1:9472621-9472640 | Msa0534130:CDS | 25.0% |
| ! | TCAAAATGTGATTATGAAAC+CGG | + | chr4_1:9472815-9472834 | Msa0534130:CDS | 25.0% |
| ! | AATTCTTAAAAAGTGAGATG+GGG | + | chr4_1:9472946-9472965 | Msa0534130:intron | 25.0% |
| !! | AAACTATAAGTGAAGTATTC+TGG | - | chr4_1:9472999-9473018 | None:intergenic | 25.0% |
| ! | AGAATACTTCACTTATAGTT+TGG | + | chr4_1:9472998-9473017 | Msa0534130:CDS | 25.0% |
| !! | TATATCGAAACTGAAAGTAT+AGG | + | chr4_1:9473134-9473153 | Msa0534130:CDS | 25.0% |
| ! | CTGAAAACCTAAAAAATTAG+GGG | - | chr4_1:9471959-9471978 | None:intergenic | 25.0% |
| !! | CTCTGAAAACCTAAAAAATT+AGG | - | chr4_1:9471961-9471980 | None:intergenic | 25.0% |
| ! | GTTGAGTTTATTCAGAAATT+AGG | + | chr4_1:9472110-9472129 | Msa0534130:CDS | 25.0% |
| !!! | AAATCAGTATCCTTTGATTT+TGG | + | chr4_1:9472151-9472170 | Msa0534130:CDS | 25.0% |
| !!! | AATCAGTATCCTTTGATTTT+GGG | + | chr4_1:9472152-9472171 | Msa0534130:CDS | 25.0% |
| !! | AAAAACATGATTCCTGTTTT+AGG | + | chr4_1:9472188-9472207 | Msa0534130:CDS | 25.0% |
| !! | AAAACATGATTCCTGTTTTA+GGG | + | chr4_1:9472189-9472208 | Msa0534130:CDS | 25.0% |
| !! | TTTTCTAAATACCCTAAAAC+AGG | - | chr4_1:9472203-9472222 | None:intergenic | 25.0% |
| ! | TAGAAAAAATTGGGATTTCT+AGG | + | chr4_1:9472216-9472235 | Msa0534130:CDS | 25.0% |
| ! | ATGTAGAGAAAGATGATATT+GGG | + | chr4_1:9472336-9472355 | Msa0534130:CDS | 25.0% |
| !! | CAAAAATATCCTGAACTTTT+AGG | + | chr4_1:9472368-9472387 | Msa0534130:CDS | 25.0% |
| !!! | TTAGTATTGGTGTTAATCAT+AGG | + | chr4_1:9472435-9472454 | Msa0534130:CDS | 25.0% |
| !!! | TAGTATTGGTGTTAATCATA+GGG | + | chr4_1:9472436-9472455 | Msa0534130:CDS | 25.0% |
| !!! | ACACAGTATCCTTATTTTTT+AGG | + | chr4_1:9472476-9472495 | Msa0534130:intron | 25.0% |
| !!! | CACAGTATCCTTATTTTTTA+GGG | + | chr4_1:9472477-9472496 | Msa0534130:intron | 25.0% |
| ! | GTTGATTACTTGGTTAATTT+AGG | + | chr4_1:9472530-9472549 | Msa0534130:intron | 25.0% |
| !!! | GTTGATTGTTTGATTAGTTT+TGG | + | chr4_1:9472621-9472640 | Msa0534130:CDS | 25.0% |
| ! | TCAAAATGTGATTATGAAAC+CGG | + | chr4_1:9472815-9472834 | Msa0534130:CDS | 25.0% |
| ! | AATTCTTAAAAAGTGAGATG+GGG | + | chr4_1:9472946-9472965 | Msa0534130:intron | 25.0% |
| !! | AAACTATAAGTGAAGTATTC+TGG | - | chr4_1:9472999-9473018 | None:intergenic | 25.0% |
| ! | AGAATACTTCACTTATAGTT+TGG | + | chr4_1:9472998-9473017 | Msa0534130:CDS | 25.0% |
| !! | TATATCGAAACTGAAAGTAT+AGG | + | chr4_1:9473134-9473153 | Msa0534130:CDS | 25.0% |
| AACGGAAAACAAATCAGTTA+AGG | - | chr4_1:9471776-9471795 | None:intergenic | 30.0% | |
| ! | TCGTTTTCCCCTAATTTTTT+AGG | + | chr4_1:9471949-9471968 | Msa0534130:intron | 30.0% |
| TATCATCTTCGATTATCTCA+AGG | + | chr4_1:9472016-9472035 | Msa0534130:intron | 30.0% | |
| ATCATCTTCGATTATCTCAA+GGG | + | chr4_1:9472017-9472036 | Msa0534130:intron | 30.0% | |
| GATGTAGAGAAAGATGATAT+TGG | + | chr4_1:9472335-9472354 | Msa0534130:CDS | 30.0% | |
| ACTCTCATCCCTAAAAAATA+AGG | - | chr4_1:9472488-9472507 | None:intergenic | 30.0% | |
| !!! | TATTTTTTAGGGATGAGAGT+TGG | + | chr4_1:9472488-9472507 | Msa0534130:intron | 30.0% |
| TTAACCAAGTAATCAACAAG+AGG | - | chr4_1:9472527-9472546 | None:intergenic | 30.0% | |
| GAGAAAAGAGCTTATTTACT+TGG | + | chr4_1:9472570-9472589 | Msa0534130:CDS | 30.0% | |
| !!! | GTTTGATTAGTTTTGGTTTG+AGG | + | chr4_1:9472628-9472647 | Msa0534130:CDS | 30.0% |
| ! | TTTGAAGCTTAAGATTGATC+CGG | + | chr4_1:9472743-9472762 | Msa0534130:CDS | 30.0% |
| ! | TCACTTATAGTTTGGAATCT+AGG | + | chr4_1:9473006-9473025 | Msa0534130:CDS | 30.0% |
| ! | GGATAAAGTGTTCATTGAAT+TGG | + | chr4_1:9473063-9473082 | Msa0534130:CDS | 30.0% |
| ! | ATCTGAAACTATATCATTCC+CGG | - | chr4_1:9473195-9473214 | None:intergenic | 30.0% |
| GAATGATATAGTTTCAGATG+AGG | + | chr4_1:9473196-9473215 | Msa0534130:CDS | 30.0% | |
| AACGGAAAACAAATCAGTTA+AGG | - | chr4_1:9471776-9471795 | None:intergenic | 30.0% | |
| ! | TCGTTTTCCCCTAATTTTTT+AGG | + | chr4_1:9471949-9471968 | Msa0534130:intron | 30.0% |
| TATCATCTTCGATTATCTCA+AGG | + | chr4_1:9472016-9472035 | Msa0534130:intron | 30.0% | |
| ATCATCTTCGATTATCTCAA+GGG | + | chr4_1:9472017-9472036 | Msa0534130:intron | 30.0% | |
| GATGTAGAGAAAGATGATAT+TGG | + | chr4_1:9472335-9472354 | Msa0534130:CDS | 30.0% | |
| ACTCTCATCCCTAAAAAATA+AGG | - | chr4_1:9472488-9472507 | None:intergenic | 30.0% | |
| !!! | TATTTTTTAGGGATGAGAGT+TGG | + | chr4_1:9472488-9472507 | Msa0534130:intron | 30.0% |
| TTAACCAAGTAATCAACAAG+AGG | - | chr4_1:9472527-9472546 | None:intergenic | 30.0% | |
| GAGAAAAGAGCTTATTTACT+TGG | + | chr4_1:9472570-9472589 | Msa0534130:CDS | 30.0% | |
| !!! | GTTTGATTAGTTTTGGTTTG+AGG | + | chr4_1:9472628-9472647 | Msa0534130:CDS | 30.0% |
| ! | TTTGAAGCTTAAGATTGATC+CGG | + | chr4_1:9472743-9472762 | Msa0534130:CDS | 30.0% |
| ! | TCACTTATAGTTTGGAATCT+AGG | + | chr4_1:9473006-9473025 | Msa0534130:CDS | 30.0% |
| ! | GGATAAAGTGTTCATTGAAT+TGG | + | chr4_1:9473063-9473082 | Msa0534130:CDS | 30.0% |
| ! | ATCTGAAACTATATCATTCC+CGG | - | chr4_1:9473195-9473214 | None:intergenic | 30.0% |
| GAATGATATAGTTTCAGATG+AGG | + | chr4_1:9473196-9473215 | Msa0534130:CDS | 30.0% | |
| GGAAAACAAATCAGTTAAGG+CGG | - | chr4_1:9471773-9471792 | None:intergenic | 35.0% | |
| ! | TTTTCCGTTTTCTCGATGTT+AGG | + | chr4_1:9471787-9471806 | Msa0534130:intron | 35.0% |
| ! | TTTCCGTTTTCTCGATGTTA+GGG | + | chr4_1:9471788-9471807 | Msa0534130:intron | 35.0% |
| AAACCCTAACATCGAGAAAA+CGG | - | chr4_1:9471794-9471813 | None:intergenic | 35.0% | |
| TTCGATTATCTCAAGGGTTT+GGG | + | chr4_1:9472023-9472042 | Msa0534130:intron | 35.0% | |
| AATTATCCCTGATGAATTGC+AGG | + | chr4_1:9472046-9472065 | Msa0534130:intron | 35.0% | |
| ACACTACAACCCAAAATCAA+AGG | - | chr4_1:9472164-9472183 | None:intergenic | 35.0% | |
| ! | CCTCTAAGAAACTTAATACC+AGG | - | chr4_1:9472311-9472330 | None:intergenic | 35.0% |
| CCTGGTATTAAGTTTCTTAG+AGG | + | chr4_1:9472308-9472327 | Msa0534130:CDS | 35.0% | |
| AGCTTAAACCCTAAAAGTTC+AGG | - | chr4_1:9472380-9472399 | None:intergenic | 35.0% | |
| !!! | CTTTTAGGGTTTAAGCTTGA+AGG | + | chr4_1:9472383-9472402 | Msa0534130:CDS | 35.0% |
| GTGGCTTATCTTGTTAGTAT+TGG | + | chr4_1:9472422-9472441 | Msa0534130:CDS | 35.0% | |
| GGTGTTAATCATAGGGATAT+TGG | + | chr4_1:9472443-9472462 | Msa0534130:CDS | 35.0% | |
| TAAGGATACTGTGTAACCAT+AGG | - | chr4_1:9472470-9472489 | None:intergenic | 35.0% | |
| ! | AAAGCCTCTTGTTGATTACT+TGG | + | chr4_1:9472520-9472539 | Msa0534130:intron | 35.0% |
| !!! | GATTAGTTTTGGTTTGAGGA+AGG | + | chr4_1:9472632-9472651 | Msa0534130:CDS | 35.0% |
| CTCAGTATCCACAGATTATT+GGG | + | chr4_1:9472676-9472695 | Msa0534130:CDS | 35.0% | |
| !! | GAAGACAATTTAGCCTTAAG+AGG | - | chr4_1:9472705-9472724 | None:intergenic | 35.0% |
| ! | AAACCGGTTGAGTTTTTACT+TGG | + | chr4_1:9472831-9472850 | Msa0534130:CDS | 35.0% |
| CTACCAAGTAAAAACTCAAC+CGG | - | chr4_1:9472837-9472856 | None:intergenic | 35.0% | |
| ! | GGTTGAGTTTTTACTTGGTA+GGG | + | chr4_1:9472836-9472855 | Msa0534130:CDS | 35.0% |
| AGATTTGAAGAGAGATTGCA+GGG | + | chr4_1:9473107-9473126 | Msa0534130:CDS | 35.0% | |
| ATAGGTCCTTCATTCTGTAT+TGG | + | chr4_1:9473152-9473171 | Msa0534130:CDS | 35.0% | |
| ! | TCTGAAACTATATCATTCCC+GGG | - | chr4_1:9473194-9473213 | None:intergenic | 35.0% |
| TATAGTTTCAGATGAGGAAG+AGG | + | chr4_1:9473202-9473221 | Msa0534130:CDS | 35.0% | |
| GGAAAACAAATCAGTTAAGG+CGG | - | chr4_1:9471773-9471792 | None:intergenic | 35.0% | |
| ! | TTTTCCGTTTTCTCGATGTT+AGG | + | chr4_1:9471787-9471806 | Msa0534130:intron | 35.0% |
| ! | TTTCCGTTTTCTCGATGTTA+GGG | + | chr4_1:9471788-9471807 | Msa0534130:intron | 35.0% |
| AAACCCTAACATCGAGAAAA+CGG | - | chr4_1:9471794-9471813 | None:intergenic | 35.0% | |
| TTCGATTATCTCAAGGGTTT+GGG | + | chr4_1:9472023-9472042 | Msa0534130:intron | 35.0% | |
| AATTATCCCTGATGAATTGC+AGG | + | chr4_1:9472046-9472065 | Msa0534130:intron | 35.0% | |
| ACACTACAACCCAAAATCAA+AGG | - | chr4_1:9472164-9472183 | None:intergenic | 35.0% | |
| ! | CCTCTAAGAAACTTAATACC+AGG | - | chr4_1:9472311-9472330 | None:intergenic | 35.0% |
| CCTGGTATTAAGTTTCTTAG+AGG | + | chr4_1:9472308-9472327 | Msa0534130:CDS | 35.0% | |
| AGCTTAAACCCTAAAAGTTC+AGG | - | chr4_1:9472380-9472399 | None:intergenic | 35.0% | |
| !!! | CTTTTAGGGTTTAAGCTTGA+AGG | + | chr4_1:9472383-9472402 | Msa0534130:CDS | 35.0% |
| GTGGCTTATCTTGTTAGTAT+TGG | + | chr4_1:9472422-9472441 | Msa0534130:CDS | 35.0% | |
| GGTGTTAATCATAGGGATAT+TGG | + | chr4_1:9472443-9472462 | Msa0534130:CDS | 35.0% | |
| TAAGGATACTGTGTAACCAT+AGG | - | chr4_1:9472470-9472489 | None:intergenic | 35.0% | |
| ! | AAAGCCTCTTGTTGATTACT+TGG | + | chr4_1:9472520-9472539 | Msa0534130:intron | 35.0% |
| !!! | GATTAGTTTTGGTTTGAGGA+AGG | + | chr4_1:9472632-9472651 | Msa0534130:CDS | 35.0% |
| CTCAGTATCCACAGATTATT+GGG | + | chr4_1:9472676-9472695 | Msa0534130:CDS | 35.0% | |
| !! | GAAGACAATTTAGCCTTAAG+AGG | - | chr4_1:9472705-9472724 | None:intergenic | 35.0% |
| ! | AAACCGGTTGAGTTTTTACT+TGG | + | chr4_1:9472831-9472850 | Msa0534130:CDS | 35.0% |
| CTACCAAGTAAAAACTCAAC+CGG | - | chr4_1:9472837-9472856 | None:intergenic | 35.0% | |
| ! | GGTTGAGTTTTTACTTGGTA+GGG | + | chr4_1:9472836-9472855 | Msa0534130:CDS | 35.0% |
| AGATTTGAAGAGAGATTGCA+GGG | + | chr4_1:9473107-9473126 | Msa0534130:CDS | 35.0% | |
| ATAGGTCCTTCATTCTGTAT+TGG | + | chr4_1:9473152-9473171 | Msa0534130:CDS | 35.0% | |
| ! | TCTGAAACTATATCATTCCC+GGG | - | chr4_1:9473194-9473213 | None:intergenic | 35.0% |
| TATAGTTTCAGATGAGGAAG+AGG | + | chr4_1:9473202-9473221 | Msa0534130:CDS | 35.0% | |
| AGATTGTAGGGACTGATTGT+GGG | - | chr4_1:9471613-9471632 | None:intergenic | 40.0% | |
| AAGATTGTAGGGACTGATTG+TGG | - | chr4_1:9471614-9471633 | None:intergenic | 40.0% | |
| TGAGGTAGGAGAAGATTGTA+GGG | - | chr4_1:9471625-9471644 | None:intergenic | 40.0% | |
| ATGAGGTAGGAGAAGATTGT+AGG | - | chr4_1:9471626-9471645 | None:intergenic | 40.0% | |
| AATCAACCGAAAAACGACGT+CGG | - | chr4_1:9471691-9471710 | None:intergenic | 40.0% | |
| !!! | GTCGTTTTTCGGTTGATTCA+CGG | + | chr4_1:9471693-9471712 | Msa0534130:CDS | 40.0% |
| AAATCAGTTAAGGCGGTGAA+CGG | - | chr4_1:9471766-9471785 | None:intergenic | 40.0% | |
| !!! | CTTTTTTCGTTCAAGCTGCT+AGG | + | chr4_1:9471852-9471871 | Msa0534130:intron | 40.0% |
| CTTCGATTATCTCAAGGGTT+TGG | + | chr4_1:9472022-9472041 | Msa0534130:intron | 40.0% | |
| CCAAATCCTGCAATTCATCA+GGG | - | chr4_1:9472055-9472074 | None:intergenic | 40.0% | |
| TCCAAATCCTGCAATTCATC+AGG | - | chr4_1:9472056-9472075 | None:intergenic | 40.0% | |
| TTCAACCGTTGAAGTCATGA+GGG | + | chr4_1:9472082-9472101 | Msa0534130:CDS | 40.0% | |
| ! | GGGATTTCTAGGTCTAAACT+TGG | + | chr4_1:9472227-9472246 | Msa0534130:CDS | 40.0% |
| ACACTAGCATGCAAAACTTG+TGG | - | chr4_1:9472272-9472291 | None:intergenic | 40.0% | |
| AGGTACTATGAGTACTTCAG+TGG | + | chr4_1:9472403-9472422 | Msa0534130:CDS | 40.0% | |
| TCATAGGGATATTGGTCCTA+TGG | + | chr4_1:9472451-9472470 | Msa0534130:CDS | 40.0% | |
| GAGGAAGGAATGTTTGCTTT+CGG | + | chr4_1:9472647-9472666 | Msa0534130:CDS | 40.0% | |
| GCTCAGTATCCACAGATTAT+TGG | + | chr4_1:9472675-9472694 | Msa0534130:CDS | 40.0% | |
| ! | GATTATTGGGTTGCCTCTTA+AGG | + | chr4_1:9472689-9472708 | Msa0534130:CDS | 40.0% |
| AAGCTTAAGATTGATCCGGA+AGG | + | chr4_1:9472747-9472766 | Msa0534130:CDS | 40.0% | |
| AGCTTAAGATTGATCCGGAA+GGG | + | chr4_1:9472748-9472767 | Msa0534130:CDS | 40.0% | |
| ! | CGGTTGAGTTTTTACTTGGT+AGG | + | chr4_1:9472835-9472854 | Msa0534130:CDS | 40.0% |
| ! | AACTCCACAAGCTCTTTTAC+AGG | - | chr4_1:9472975-9472994 | None:intergenic | 40.0% |
| GGATTAAACCAAGATACCAG+AGG | + | chr4_1:9473027-9473046 | Msa0534130:CDS | 40.0% | |
| GCAATCTCTCTTCAAATCTC+TGG | - | chr4_1:9473106-9473125 | None:intergenic | 40.0% | |
| GAGATTTGAAGAGAGATTGC+AGG | + | chr4_1:9473106-9473125 | Msa0534130:CDS | 40.0% | |
| ! | GTCCTTCATTCTGTATTGGT+GGG | + | chr4_1:9473156-9473175 | Msa0534130:CDS | 40.0% |
| TTCCCACCAATACAGAATGA+AGG | - | chr4_1:9473161-9473180 | None:intergenic | 40.0% | |
| AGATTGTAGGGACTGATTGT+GGG | - | chr4_1:9471613-9471632 | None:intergenic | 40.0% | |
| AAGATTGTAGGGACTGATTG+TGG | - | chr4_1:9471614-9471633 | None:intergenic | 40.0% | |
| TGAGGTAGGAGAAGATTGTA+GGG | - | chr4_1:9471625-9471644 | None:intergenic | 40.0% | |
| ATGAGGTAGGAGAAGATTGT+AGG | - | chr4_1:9471626-9471645 | None:intergenic | 40.0% | |
| AATCAACCGAAAAACGACGT+CGG | - | chr4_1:9471691-9471710 | None:intergenic | 40.0% | |
| !!! | GTCGTTTTTCGGTTGATTCA+CGG | + | chr4_1:9471693-9471712 | Msa0534130:CDS | 40.0% |
| AAATCAGTTAAGGCGGTGAA+CGG | - | chr4_1:9471766-9471785 | None:intergenic | 40.0% | |
| !!! | CTTTTTTCGTTCAAGCTGCT+AGG | + | chr4_1:9471852-9471871 | Msa0534130:intron | 40.0% |
| CTTCGATTATCTCAAGGGTT+TGG | + | chr4_1:9472022-9472041 | Msa0534130:intron | 40.0% | |
| CCAAATCCTGCAATTCATCA+GGG | - | chr4_1:9472055-9472074 | None:intergenic | 40.0% | |
| TCCAAATCCTGCAATTCATC+AGG | - | chr4_1:9472056-9472075 | None:intergenic | 40.0% | |
| TTCAACCGTTGAAGTCATGA+GGG | + | chr4_1:9472082-9472101 | Msa0534130:CDS | 40.0% | |
| ! | GGGATTTCTAGGTCTAAACT+TGG | + | chr4_1:9472227-9472246 | Msa0534130:CDS | 40.0% |
| ACACTAGCATGCAAAACTTG+TGG | - | chr4_1:9472272-9472291 | None:intergenic | 40.0% | |
| AGGTACTATGAGTACTTCAG+TGG | + | chr4_1:9472403-9472422 | Msa0534130:CDS | 40.0% | |
| TCATAGGGATATTGGTCCTA+TGG | + | chr4_1:9472451-9472470 | Msa0534130:CDS | 40.0% | |
| GAGGAAGGAATGTTTGCTTT+CGG | + | chr4_1:9472647-9472666 | Msa0534130:CDS | 40.0% | |
| GCTCAGTATCCACAGATTAT+TGG | + | chr4_1:9472675-9472694 | Msa0534130:CDS | 40.0% | |
| ! | GATTATTGGGTTGCCTCTTA+AGG | + | chr4_1:9472689-9472708 | Msa0534130:CDS | 40.0% |
| AAGCTTAAGATTGATCCGGA+AGG | + | chr4_1:9472747-9472766 | Msa0534130:CDS | 40.0% | |
| AGCTTAAGATTGATCCGGAA+GGG | + | chr4_1:9472748-9472767 | Msa0534130:CDS | 40.0% | |
| ! | CGGTTGAGTTTTTACTTGGT+AGG | + | chr4_1:9472835-9472854 | Msa0534130:CDS | 40.0% |
| ! | AACTCCACAAGCTCTTTTAC+AGG | - | chr4_1:9472975-9472994 | None:intergenic | 40.0% |
| GGATTAAACCAAGATACCAG+AGG | + | chr4_1:9473027-9473046 | Msa0534130:CDS | 40.0% | |
| GCAATCTCTCTTCAAATCTC+TGG | - | chr4_1:9473106-9473125 | None:intergenic | 40.0% | |
| GAGATTTGAAGAGAGATTGC+AGG | + | chr4_1:9473106-9473125 | Msa0534130:CDS | 40.0% | |
| ! | GTCCTTCATTCTGTATTGGT+GGG | + | chr4_1:9473156-9473175 | Msa0534130:CDS | 40.0% |
| TTCCCACCAATACAGAATGA+AGG | - | chr4_1:9473161-9473180 | None:intergenic | 40.0% | |
| GATTGTAGGGACTGATTGTG+GGG | - | chr4_1:9471612-9471631 | None:intergenic | 45.0% | |
| AAGGTTGAGTCGTATGAGGT+AGG | - | chr4_1:9471639-9471658 | None:intergenic | 45.0% | |
| GAAAAACGACGTCGGAGTTA+CGG | - | chr4_1:9471683-9471702 | None:intergenic | 45.0% | |
| !!! | GTAACTCCGACGTCGTTTTT+CGG | + | chr4_1:9471682-9471701 | Msa0534130:CDS | 45.0% |
| !! | GTTTTTCGGTTGATTCACGG+CGG | + | chr4_1:9471696-9471715 | Msa0534130:CDS | 45.0% |
| !! | TTTTTCGGTTGATTCACGGC+GGG | + | chr4_1:9471697-9471716 | Msa0534130:CDS | 45.0% |
| !! | TTTTTGACTCCTCCAGTCGT+AGG | - | chr4_1:9471887-9471906 | None:intergenic | 45.0% |
| ACGAAATTACCGAAGTGCGA+TGG | - | chr4_1:9471933-9471952 | None:intergenic | 45.0% | |
| CCCTGATGAATTGCAGGATT+TGG | + | chr4_1:9472052-9472071 | Msa0534130:intron | 45.0% | |
| CTCATGACTTCAACGGTTGA+AGG | - | chr4_1:9472083-9472102 | None:intergenic | 45.0% | |
| CTTCAACCGTTGAAGTCATG+AGG | + | chr4_1:9472081-9472100 | Msa0534130:CDS | 45.0% | |
| ACGTTCCCTCATGACTTCAA+CGG | - | chr4_1:9472090-9472109 | None:intergenic | 45.0% | |
| ! | GTTATTGTTGAGCTTGCTCC+TGG | + | chr4_1:9472290-9472309 | Msa0534130:CDS | 45.0% |
| ! | GGTTAATTTAGGGTTGCCCT+AGG | + | chr4_1:9472541-9472560 | Msa0534130:intron | 45.0% |
| ! | CTCTTTTCTCCAGCATCCTA+GGG | - | chr4_1:9472560-9472579 | None:intergenic | 45.0% |
| AGAGGCAACCCAATAATCTG+TGG | - | chr4_1:9472687-9472706 | None:intergenic | 45.0% | |
| TGATGAAGACTAACCACCTG+TGG | - | chr4_1:9472798-9472817 | None:intergenic | 45.0% | |
| ATACTAGCCACATCCTGTGA+TGG | - | chr4_1:9472867-9472886 | None:intergenic | 45.0% | |
| ATCACAGGATGTGGCTAGTA+TGG | + | chr4_1:9472866-9472885 | Msa0534130:intron | 45.0% | |
| GGTGATCAAGTGTCCTCAAT+TGG | + | chr4_1:9472887-9472906 | Msa0534130:intron | 45.0% | |
| GAGACCTGTAAAAGAGCTTG+TGG | + | chr4_1:9472968-9472987 | Msa0534130:intron | 45.0% | |
| CTCTTAAGCCTCTGGTATCT+TGG | - | chr4_1:9473038-9473057 | None:intergenic | 45.0% | |
| ATACCAGAGGCTTAAGAGCA+AGG | + | chr4_1:9473040-9473059 | Msa0534130:CDS | 45.0% | |
| TACCAGAGGCTTAAGAGCAA+GGG | + | chr4_1:9473041-9473060 | Msa0534130:CDS | 45.0% | |
| GGTCCTTCATTCTGTATTGG+TGG | + | chr4_1:9473155-9473174 | Msa0534130:CDS | 45.0% | |
| GATTGTAGGGACTGATTGTG+GGG | - | chr4_1:9471612-9471631 | None:intergenic | 45.0% | |
| AAGGTTGAGTCGTATGAGGT+AGG | - | chr4_1:9471639-9471658 | None:intergenic | 45.0% | |
| GAAAAACGACGTCGGAGTTA+CGG | - | chr4_1:9471683-9471702 | None:intergenic | 45.0% | |
| !!! | GTAACTCCGACGTCGTTTTT+CGG | + | chr4_1:9471682-9471701 | Msa0534130:CDS | 45.0% |
| !! | GTTTTTCGGTTGATTCACGG+CGG | + | chr4_1:9471696-9471715 | Msa0534130:CDS | 45.0% |
| !! | TTTTTCGGTTGATTCACGGC+GGG | + | chr4_1:9471697-9471716 | Msa0534130:CDS | 45.0% |
| !! | TTTTTGACTCCTCCAGTCGT+AGG | - | chr4_1:9471887-9471906 | None:intergenic | 45.0% |
| ACGAAATTACCGAAGTGCGA+TGG | - | chr4_1:9471933-9471952 | None:intergenic | 45.0% | |
| CCCTGATGAATTGCAGGATT+TGG | + | chr4_1:9472052-9472071 | Msa0534130:intron | 45.0% | |
| CTCATGACTTCAACGGTTGA+AGG | - | chr4_1:9472083-9472102 | None:intergenic | 45.0% | |
| CTTCAACCGTTGAAGTCATG+AGG | + | chr4_1:9472081-9472100 | Msa0534130:CDS | 45.0% | |
| ACGTTCCCTCATGACTTCAA+CGG | - | chr4_1:9472090-9472109 | None:intergenic | 45.0% | |
| ! | GTTATTGTTGAGCTTGCTCC+TGG | + | chr4_1:9472290-9472309 | Msa0534130:CDS | 45.0% |
| ! | GGTTAATTTAGGGTTGCCCT+AGG | + | chr4_1:9472541-9472560 | Msa0534130:intron | 45.0% |
| ! | CTCTTTTCTCCAGCATCCTA+GGG | - | chr4_1:9472560-9472579 | None:intergenic | 45.0% |
| AGAGGCAACCCAATAATCTG+TGG | - | chr4_1:9472687-9472706 | None:intergenic | 45.0% | |
| TGATGAAGACTAACCACCTG+TGG | - | chr4_1:9472798-9472817 | None:intergenic | 45.0% | |
| ATACTAGCCACATCCTGTGA+TGG | - | chr4_1:9472867-9472886 | None:intergenic | 45.0% | |
| ATCACAGGATGTGGCTAGTA+TGG | + | chr4_1:9472866-9472885 | Msa0534130:intron | 45.0% | |
| GGTGATCAAGTGTCCTCAAT+TGG | + | chr4_1:9472887-9472906 | Msa0534130:intron | 45.0% | |
| GAGACCTGTAAAAGAGCTTG+TGG | + | chr4_1:9472968-9472987 | Msa0534130:intron | 45.0% | |
| CTCTTAAGCCTCTGGTATCT+TGG | - | chr4_1:9473038-9473057 | None:intergenic | 45.0% | |
| ATACCAGAGGCTTAAGAGCA+AGG | + | chr4_1:9473040-9473059 | Msa0534130:CDS | 45.0% | |
| TACCAGAGGCTTAAGAGCAA+GGG | + | chr4_1:9473041-9473060 | Msa0534130:CDS | 45.0% | |
| GGTCCTTCATTCTGTATTGG+TGG | + | chr4_1:9473155-9473174 | Msa0534130:CDS | 45.0% | |
| GAGCAAGGTTGAGTCGTATG+AGG | - | chr4_1:9471643-9471662 | None:intergenic | 50.0% | |
| AGGAAATCTGCTCCTACGAC+TGG | + | chr4_1:9471872-9471891 | Msa0534130:intron | 50.0% | |
| AAATCTGCTCCTACGACTGG+AGG | + | chr4_1:9471875-9471894 | Msa0534130:CDS | 50.0% | |
| ! | GCTCTTTTCTCCAGCATCCT+AGG | - | chr4_1:9472561-9472580 | None:intergenic | 50.0% |
| TTGATCCGGAAGGGTTTGCA+AGG | + | chr4_1:9472757-9472776 | Msa0534130:CDS | 50.0% | |
| TGATCCGGAAGGGTTTGCAA+GGG | + | chr4_1:9472758-9472777 | Msa0534130:CDS | 50.0% | |
| TGGTAGGGCAATACCATCAC+AGG | + | chr4_1:9472851-9472870 | Msa0534130:CDS | 50.0% | |
| GGCAATACCATCACAGGATG+TGG | + | chr4_1:9472857-9472876 | Msa0534130:CDS | 50.0% | |
| ACCAGAGGCTTAAGAGCAAG+GGG | + | chr4_1:9473042-9473061 | Msa0534130:CDS | 50.0% | |
| GGTGGGAAATTAGAGCTACC+CGG | + | chr4_1:9473173-9473192 | Msa0534130:CDS | 50.0% | |
| GTGGGAAATTAGAGCTACCC+GGG | + | chr4_1:9473174-9473193 | Msa0534130:CDS | 50.0% | |
| GAGCAAGGTTGAGTCGTATG+AGG | - | chr4_1:9471643-9471662 | None:intergenic | 50.0% | |
| AGGAAATCTGCTCCTACGAC+TGG | + | chr4_1:9471872-9471891 | Msa0534130:intron | 50.0% | |
| AAATCTGCTCCTACGACTGG+AGG | + | chr4_1:9471875-9471894 | Msa0534130:CDS | 50.0% | |
| ! | GCTCTTTTCTCCAGCATCCT+AGG | - | chr4_1:9472561-9472580 | None:intergenic | 50.0% |
| TTGATCCGGAAGGGTTTGCA+AGG | + | chr4_1:9472757-9472776 | Msa0534130:CDS | 50.0% | |
| TGATCCGGAAGGGTTTGCAA+GGG | + | chr4_1:9472758-9472777 | Msa0534130:CDS | 50.0% | |
| TGGTAGGGCAATACCATCAC+AGG | + | chr4_1:9472851-9472870 | Msa0534130:CDS | 50.0% | |
| GGCAATACCATCACAGGATG+TGG | + | chr4_1:9472857-9472876 | Msa0534130:CDS | 50.0% | |
| ACCAGAGGCTTAAGAGCAAG+GGG | + | chr4_1:9473042-9473061 | Msa0534130:CDS | 50.0% | |
| GGTGGGAAATTAGAGCTACC+CGG | + | chr4_1:9473173-9473192 | Msa0534130:CDS | 50.0% | |
| GTGGGAAATTAGAGCTACCC+GGG | + | chr4_1:9473174-9473193 | Msa0534130:CDS | 50.0% | |
| TAGGGACTGATTGTGGGGTG+AGG | - | chr4_1:9471607-9471626 | None:intergenic | 55.0% | |
| CGTCGGAGTTACGGAGGTTA+CGG | - | chr4_1:9471674-9471693 | None:intergenic | 55.0% | |
| AAACGACGTCGGAGTTACGG+AGG | - | chr4_1:9471680-9471699 | None:intergenic | 55.0% | |
| GTGAACGGTGGTTACCTTGG+TGG | - | chr4_1:9471751-9471770 | None:intergenic | 55.0% | |
| TCAGTTAAGGCGGTGAACGG+TGG | - | chr4_1:9471763-9471782 | None:intergenic | 55.0% | |
| AAACCTCACCGTTACCGTCC+TGG | + | chr4_1:9471905-9471924 | Msa0534130:CDS | 55.0% | |
| CGATGGTTCCAGGACGGTAA+CGG | - | chr4_1:9471916-9471935 | None:intergenic | 55.0% | |
| GAAGTGCGATGGTTCCAGGA+CGG | - | chr4_1:9471922-9471941 | None:intergenic | 55.0% | |
| GTCCTGGAACCATCGCACTT+CGG | + | chr4_1:9471921-9471940 | Msa0534130:CDS | 55.0% | |
| TACCGAAGTGCGATGGTTCC+AGG | - | chr4_1:9471926-9471945 | None:intergenic | 55.0% | |
| TTAGGGTTGCCCTAGGATGC+TGG | + | chr4_1:9472548-9472567 | Msa0534130:intron | 55.0% | |
| ACCACCCTTGCAAACCCTTC+CGG | - | chr4_1:9472765-9472784 | None:intergenic | 55.0% | |
| ACTCGCAGCGCAACCAATTG+AGG | - | chr4_1:9472903-9472922 | None:intergenic | 55.0% | |
| TCCCCTTGCTCTTAAGCCTC+TGG | - | chr4_1:9473046-9473065 | None:intergenic | 55.0% | |
| TAGGGACTGATTGTGGGGTG+AGG | - | chr4_1:9471607-9471626 | None:intergenic | 55.0% | |
| CGTCGGAGTTACGGAGGTTA+CGG | - | chr4_1:9471674-9471693 | None:intergenic | 55.0% | |
| AAACGACGTCGGAGTTACGG+AGG | - | chr4_1:9471680-9471699 | None:intergenic | 55.0% | |
| GTGAACGGTGGTTACCTTGG+TGG | - | chr4_1:9471751-9471770 | None:intergenic | 55.0% | |
| TCAGTTAAGGCGGTGAACGG+TGG | - | chr4_1:9471763-9471782 | None:intergenic | 55.0% | |
| AAACCTCACCGTTACCGTCC+TGG | + | chr4_1:9471905-9471924 | Msa0534130:CDS | 55.0% | |
| CGATGGTTCCAGGACGGTAA+CGG | - | chr4_1:9471916-9471935 | None:intergenic | 55.0% | |
| GAAGTGCGATGGTTCCAGGA+CGG | - | chr4_1:9471922-9471941 | None:intergenic | 55.0% | |
| GTCCTGGAACCATCGCACTT+CGG | + | chr4_1:9471921-9471940 | Msa0534130:CDS | 55.0% | |
| TACCGAAGTGCGATGGTTCC+AGG | - | chr4_1:9471926-9471945 | None:intergenic | 55.0% | |
| TTAGGGTTGCCCTAGGATGC+TGG | + | chr4_1:9472548-9472567 | Msa0534130:intron | 55.0% | |
| ACCACCCTTGCAAACCCTTC+CGG | - | chr4_1:9472765-9472784 | None:intergenic | 55.0% | |
| ACTCGCAGCGCAACCAATTG+AGG | - | chr4_1:9472903-9472922 | None:intergenic | 55.0% | |
| TCCCCTTGCTCTTAAGCCTC+TGG | - | chr4_1:9473046-9473065 | None:intergenic | 55.0% | |
| CGGAGTTACGGAGGTTACGG+TGG | - | chr4_1:9471671-9471690 | None:intergenic | 60.0% | |
| GCGAGCTGCTTCCTTGGAGT+CGG | - | chr4_1:9471729-9471748 | None:intergenic | 60.0% | |
| !! | TTGGTGGCGAGCTGCTTCCT+TGG | - | chr4_1:9471735-9471754 | None:intergenic | 60.0% |
| AAGGAAGCAGCTCGCCACCA+AGG | + | chr4_1:9471734-9471753 | Msa0534130:CDS | 60.0% | |
| GCGGTGAACGGTGGTTACCT+TGG | - | chr4_1:9471754-9471773 | None:intergenic | 60.0% | |
| ! | GTTCCAGGACGGTAACGGTG+AGG | - | chr4_1:9471911-9471930 | None:intergenic | 60.0% |
| TCCGGAAGGGTTTGCAAGGG+TGG | + | chr4_1:9472761-9472780 | Msa0534130:CDS | 60.0% | |
| GGAAGGGTTTGCAAGGGTGG+TGG | + | chr4_1:9472764-9472783 | Msa0534130:CDS | 60.0% | |
| !! | GGTGGTGGAGAAGATGCCAC+AGG | + | chr4_1:9472779-9472798 | Msa0534130:CDS | 60.0% |
| GGTGGAGAAGATGCCACAGG+TGG | + | chr4_1:9472782-9472801 | Msa0534130:CDS | 60.0% | |
| CGGAGTTACGGAGGTTACGG+TGG | - | chr4_1:9471671-9471690 | None:intergenic | 60.0% | |
| GCGAGCTGCTTCCTTGGAGT+CGG | - | chr4_1:9471729-9471748 | None:intergenic | 60.0% | |
| !! | TTGGTGGCGAGCTGCTTCCT+TGG | - | chr4_1:9471735-9471754 | None:intergenic | 60.0% |
| AAGGAAGCAGCTCGCCACCA+AGG | + | chr4_1:9471734-9471753 | Msa0534130:CDS | 60.0% | |
| GCGGTGAACGGTGGTTACCT+TGG | - | chr4_1:9471754-9471773 | None:intergenic | 60.0% | |
| ! | GTTCCAGGACGGTAACGGTG+AGG | - | chr4_1:9471911-9471930 | None:intergenic | 60.0% |
| TCCGGAAGGGTTTGCAAGGG+TGG | + | chr4_1:9472761-9472780 | Msa0534130:CDS | 60.0% | |
| GGAAGGGTTTGCAAGGGTGG+TGG | + | chr4_1:9472764-9472783 | Msa0534130:CDS | 60.0% | |
| !! | GGTGGTGGAGAAGATGCCAC+AGG | + | chr4_1:9472779-9472798 | Msa0534130:CDS | 60.0% |
| GGTGGAGAAGATGCCACAGG+TGG | + | chr4_1:9472782-9472801 | Msa0534130:CDS | 60.0% | |
| !! | GCGGGATTGTGCCGACTCCA+AGG | + | chr4_1:9471715-9471734 | Msa0534130:CDS | 65.0% |
| !! | GCGGGATTGTGCCGACTCCA+AGG | + | chr4_1:9471715-9471734 | Msa0534130:CDS | 65.0% |
| GTTACGGTGGCGCGCGAGCA+AGG | - | chr4_1:9471658-9471677 | None:intergenic | 70.0% | |
| GTTACGGTGGCGCGCGAGCA+AGG | - | chr4_1:9471658-9471677 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 9471594 | 9473268 | 9471594 | ID=Msa0534130;Name=Msa0534130 |
| chr4_1 | mRNA | 9471594 | 9473268 | 9471594 | ID=Msa0534130-mRNA-1;Parent=Msa0534130;Name=Msa0534130-mRNA-1;_AED=0.31;_eAED=0.35;_QI=0|0|0|0.8|1|1|5|0|417 |
| chr4_1 | exon | 9471594 | 9471755 | 9471594 | ID=Msa0534130-mRNA-1:exon:3075;Parent=Msa0534130-mRNA-1 |
| chr4_1 | exon | 9471874 | 9471942 | 9471874 | ID=Msa0534130-mRNA-1:exon:3076;Parent=Msa0534130-mRNA-1 |
| chr4_1 | exon | 9472068 | 9472472 | 9472068 | ID=Msa0534130-mRNA-1:exon:3077;Parent=Msa0534130-mRNA-1 |
| chr4_1 | exon | 9472552 | 9472882 | 9472552 | ID=Msa0534130-mRNA-1:exon:3078;Parent=Msa0534130-mRNA-1 |
| chr4_1 | exon | 9472982 | 9473268 | 9472982 | ID=Msa0534130-mRNA-1:exon:3079;Parent=Msa0534130-mRNA-1 |
| chr4_1 | CDS | 9471594 | 9471755 | 9471594 | ID=Msa0534130-mRNA-1:cds;Parent=Msa0534130-mRNA-1 |
| chr4_1 | CDS | 9471874 | 9471942 | 9471874 | ID=Msa0534130-mRNA-1:cds;Parent=Msa0534130-mRNA-1 |
| chr4_1 | CDS | 9472068 | 9472472 | 9472068 | ID=Msa0534130-mRNA-1:cds;Parent=Msa0534130-mRNA-1 |
| chr4_1 | CDS | 9472552 | 9472882 | 9472552 | ID=Msa0534130-mRNA-1:cds;Parent=Msa0534130-mRNA-1 |
| chr4_1 | CDS | 9472982 | 9473268 | 9472982 | ID=Msa0534130-mRNA-1:cds;Parent=Msa0534130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
