Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535410 | XP_013455021.2 | 87.261 | 314 | 37 | 2 | 1 | 314 | 1 | 311 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535410 | sp|Q8L9Y3|ARR14_ARATH | 38.168 | 262 | 121 | 6 | 7 | 231 | 4 | 261 | 1.23e-53 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535410 | A0A396I0H3 | 81.587 | 315 | 54 | 3 | 1 | 314 | 1 | 312 | 0.0 | 530 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0535410 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535410 | MtrunA17_Chr4g0009851 | 81.587 | 315 | 54 | 3 | 1 | 314 | 1 | 312 | 0.0 | 530 |
| Msa0535410 | MtrunA17_Chr4g0009981 | 85.496 | 262 | 35 | 2 | 53 | 314 | 1 | 259 | 2.23e-167 | 465 |
| Msa0535410 | MtrunA17_Chr4g0009901 | 78.099 | 242 | 51 | 1 | 1 | 242 | 1 | 240 | 2.47e-133 | 379 |
| Msa0535410 | MtrunA17_Chr4g0011071 | 77.698 | 139 | 29 | 1 | 55 | 193 | 35 | 171 | 7.96e-75 | 227 |
| Msa0535410 | MtrunA17_Chr1g0161431 | 44.444 | 252 | 99 | 5 | 10 | 226 | 11 | 256 | 2.39e-65 | 216 |
| Msa0535410 | MtrunA17_Chr6g0471041 | 42.997 | 307 | 151 | 10 | 1 | 297 | 1 | 293 | 1.38e-61 | 201 |
| Msa0535410 | MtrunA17_Chr4g0009991 | 79.832 | 119 | 21 | 2 | 101 | 219 | 1 | 116 | 1.31e-58 | 184 |
| Msa0535410 | MtrunA17_Chr8g0376881 | 40.078 | 257 | 124 | 5 | 9 | 239 | 24 | 276 | 6.39e-55 | 187 |
| Msa0535410 | MtrunA17_Chr4g0067981 | 39.918 | 243 | 118 | 3 | 10 | 226 | 31 | 271 | 1.20e-53 | 186 |
| Msa0535410 | MtrunA17_Chr3g0123131 | 40.164 | 244 | 116 | 5 | 10 | 225 | 13 | 254 | 1.94e-53 | 183 |
| Msa0535410 | MtrunA17_Chr2g0294911 | 37.970 | 266 | 137 | 4 | 10 | 249 | 29 | 292 | 1.37e-52 | 182 |
| Msa0535410 | MtrunA17_Chr1g0149841 | 35.836 | 293 | 155 | 6 | 7 | 271 | 2 | 289 | 1.94e-49 | 171 |
| Msa0535410 | MtrunA17_Chr5g0423031 | 84.270 | 89 | 14 | 0 | 1 | 89 | 1 | 89 | 2.15e-49 | 162 |
| Msa0535410 | MtrunA17_Chr4g0010001 | 80.899 | 89 | 17 | 0 | 1 | 89 | 1 | 89 | 2.72e-49 | 159 |
| Msa0535410 | MtrunA17_Chr7g0275401 | 36.614 | 254 | 132 | 5 | 7 | 232 | 2 | 254 | 4.01e-47 | 160 |
| Msa0535410 | MtrunA17_Chr8g0391911 | 38.017 | 242 | 122 | 4 | 4 | 219 | 3 | 242 | 4.32e-46 | 156 |
| Msa0535410 | MtrunA17_Chr3g0137101 | 36.842 | 247 | 126 | 3 | 10 | 226 | 8 | 254 | 1.99e-45 | 163 |
| Msa0535410 | MtrunA17_Chr7g0275891 | 32.997 | 297 | 158 | 5 | 7 | 262 | 2 | 298 | 1.54e-44 | 155 |
| Msa0535410 | MtrunA17_Chr8g0383961 | 39.576 | 283 | 129 | 11 | 1 | 271 | 1 | 253 | 2.96e-44 | 152 |
| Msa0535410 | MtrunA17_Chr2g0304841 | 33.725 | 255 | 134 | 4 | 10 | 229 | 18 | 272 | 7.57e-43 | 156 |
| Msa0535410 | MtrunA17_Chr4g0074411 | 34.538 | 249 | 138 | 4 | 9 | 233 | 17 | 264 | 1.22e-41 | 152 |
| Msa0535410 | MtrunA17_Chr4g0074401 | 33.068 | 251 | 140 | 4 | 10 | 233 | 17 | 266 | 1.36e-41 | 152 |
| Msa0535410 | MtrunA17_Chr1g0149851 | 34.717 | 265 | 124 | 5 | 7 | 226 | 2 | 262 | 5.27e-41 | 149 |
| Msa0535410 | MtrunA17_Chr3g0134461 | 36.792 | 212 | 105 | 4 | 10 | 219 | 8 | 192 | 4.07e-38 | 134 |
| Msa0535410 | MtrunA17_Chr6g0456631 | 41.250 | 160 | 90 | 2 | 4 | 161 | 3 | 160 | 5.23e-37 | 130 |
| Msa0535410 | MtrunA17_Chr3g0134481 | 34.703 | 219 | 103 | 4 | 4 | 221 | 4 | 183 | 1.14e-36 | 130 |
| Msa0535410 | MtrunA17_Chr4g0074421 | 35.714 | 182 | 95 | 3 | 59 | 219 | 2 | 182 | 1.99e-33 | 122 |
| Msa0535410 | MtrunA17_Chr1g0149831 | 37.245 | 196 | 93 | 5 | 68 | 236 | 1 | 193 | 1.64e-30 | 115 |
| Msa0535410 | MtrunA17_Chr6g0473731 | 32.778 | 180 | 109 | 3 | 89 | 259 | 10 | 186 | 1.31e-22 | 97.4 |
| Msa0535410 | MtrunA17_Chr2g0324891 | 39.362 | 94 | 54 | 2 | 135 | 226 | 125 | 217 | 6.94e-16 | 77.8 |
| Msa0535410 | MtrunA17_Chr4g0040481 | 51.724 | 58 | 28 | 0 | 169 | 226 | 157 | 214 | 1.82e-15 | 76.6 |
| Msa0535410 | MtrunA17_Chr5g0417521 | 57.407 | 54 | 22 | 1 | 170 | 222 | 15 | 68 | 8.75e-15 | 73.9 |
| Msa0535410 | MtrunA17_Chr4g0054981 | 38.554 | 83 | 51 | 0 | 169 | 251 | 309 | 391 | 3.06e-14 | 73.2 |
| Msa0535410 | MtrunA17_Chr5g0400241 | 38.554 | 83 | 51 | 0 | 169 | 251 | 310 | 392 | 3.80e-14 | 72.8 |
| Msa0535410 | MtrunA17_Chr6g0461641 | 57.407 | 54 | 22 | 1 | 170 | 222 | 42 | 95 | 4.06e-14 | 72.4 |
| Msa0535410 | MtrunA17_Chr7g0255711 | 53.448 | 58 | 27 | 0 | 169 | 226 | 90 | 147 | 7.47e-14 | 70.9 |
| Msa0535410 | MtrunA17_Chr4g0031961 | 51.724 | 58 | 28 | 0 | 169 | 226 | 130 | 187 | 1.08e-13 | 70.5 |
| Msa0535410 | MtrunA17_Chr2g0321461 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 1.39e-13 | 70.9 |
| Msa0535410 | MtrunA17_Chr7g0254981 | 42.857 | 91 | 49 | 2 | 168 | 257 | 48 | 136 | 3.04e-13 | 68.9 |
| Msa0535410 | MtrunA17_Chr7g0261911 | 45.349 | 86 | 44 | 3 | 161 | 245 | 253 | 336 | 7.78e-13 | 68.9 |
| Msa0535410 | MtrunA17_Chr4g0042451 | 51.852 | 54 | 25 | 1 | 170 | 222 | 17 | 70 | 4.67e-12 | 65.9 |
| Msa0535410 | MtrunA17_Chr1g0162931 | 41.772 | 79 | 44 | 2 | 156 | 233 | 5 | 82 | 1.86e-11 | 63.5 |
| Msa0535410 | MtrunA17_Chr2g0291021 | 57.407 | 54 | 22 | 1 | 170 | 222 | 49 | 102 | 3.18e-11 | 63.5 |
| Msa0535410 | MtrunA17_Chr1g0198601 | 38.947 | 95 | 50 | 2 | 151 | 244 | 199 | 286 | 5.13e-11 | 63.2 |
| Msa0535410 | MtrunA17_Chr1g0175081 | 36.559 | 93 | 55 | 3 | 156 | 247 | 10 | 99 | 8.19e-11 | 58.2 |
| Msa0535410 | MtrunA17_Chr3g0095611 | 49.123 | 57 | 28 | 1 | 168 | 223 | 17 | 73 | 9.42e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535410 | AT2G01760.1 | 38.168 | 262 | 121 | 6 | 7 | 231 | 4 | 261 | 1.25e-54 | 182 |
| Msa0535410 | AT1G67710.1 | 38.577 | 267 | 128 | 7 | 11 | 243 | 8 | 272 | 2.57e-50 | 174 |
| Msa0535410 | AT2G01760.2 | 34.483 | 290 | 121 | 7 | 7 | 231 | 4 | 289 | 7.07e-49 | 168 |
| Msa0535410 | AT3G16857.1 | 37.931 | 261 | 118 | 6 | 10 | 226 | 33 | 293 | 1.49e-48 | 172 |
| Msa0535410 | AT3G16857.2 | 37.931 | 261 | 118 | 6 | 10 | 226 | 33 | 293 | 1.55e-48 | 172 |
| Msa0535410 | AT4G31920.1 | 35.743 | 249 | 147 | 3 | 10 | 248 | 13 | 258 | 6.32e-48 | 169 |
| Msa0535410 | AT2G25180.1 | 38.494 | 239 | 125 | 5 | 10 | 226 | 13 | 251 | 5.06e-44 | 159 |
| Msa0535410 | AT5G58080.1 | 36.220 | 254 | 128 | 6 | 10 | 236 | 14 | 260 | 3.28e-38 | 143 |
| Msa0535410 | AT3G16857.3 | 36.916 | 214 | 92 | 5 | 56 | 226 | 10 | 223 | 9.17e-37 | 139 |
| Msa0535410 | AT2G01760.3 | 36.000 | 200 | 88 | 5 | 68 | 231 | 1 | 196 | 6.50e-35 | 129 |
| Msa0535410 | AT5G49240.1 | 30.962 | 239 | 134 | 4 | 9 | 219 | 37 | 272 | 7.07e-34 | 125 |
| Msa0535410 | AT1G67710.2 | 38.164 | 207 | 97 | 5 | 68 | 243 | 1 | 207 | 2.87e-33 | 127 |
| Msa0535410 | AT3G62670.1 | 31.064 | 235 | 139 | 6 | 15 | 228 | 42 | 274 | 2.34e-31 | 122 |
| Msa0535410 | AT1G49190.1 | 28.455 | 246 | 147 | 5 | 10 | 226 | 30 | 275 | 6.30e-28 | 112 |
| Msa0535410 | AT5G07210.2 | 26.667 | 270 | 144 | 7 | 14 | 231 | 16 | 283 | 5.51e-25 | 105 |
| Msa0535410 | AT1G67710.3 | 36.898 | 187 | 87 | 5 | 88 | 243 | 12 | 198 | 1.32e-24 | 103 |
| Msa0535410 | AT5G07210.1 | 25.899 | 278 | 144 | 8 | 14 | 231 | 16 | 291 | 1.76e-22 | 98.2 |
| Msa0535410 | AT2G27070.1 | 24.627 | 268 | 145 | 9 | 14 | 226 | 16 | 281 | 1.21e-18 | 86.7 |
| Msa0535410 | AT1G49190.2 | 31.967 | 122 | 82 | 1 | 10 | 130 | 30 | 151 | 7.80e-18 | 84.3 |
| Msa0535410 | AT5G29000.4 | 32.461 | 191 | 99 | 8 | 69 | 238 | 120 | 301 | 2.40e-16 | 78.6 |
| Msa0535410 | AT5G29000.1 | 31.163 | 215 | 112 | 9 | 69 | 256 | 77 | 282 | 3.35e-16 | 79.0 |
| Msa0535410 | AT5G29000.3 | 31.163 | 215 | 112 | 9 | 69 | 256 | 77 | 282 | 3.35e-16 | 79.0 |
| Msa0535410 | AT5G29000.2 | 31.818 | 198 | 105 | 8 | 69 | 245 | 120 | 308 | 3.53e-16 | 79.0 |
| Msa0535410 | AT5G44190.1 | 53.333 | 60 | 28 | 0 | 167 | 226 | 144 | 203 | 9.90e-16 | 77.4 |
| Msa0535410 | AT5G44190.2 | 53.333 | 60 | 28 | 0 | 167 | 226 | 144 | 203 | 1.22e-15 | 77.0 |
| Msa0535410 | AT5G59570.2 | 45.070 | 71 | 39 | 0 | 156 | 226 | 127 | 197 | 1.11e-14 | 73.6 |
| Msa0535410 | AT5G59570.1 | 45.070 | 71 | 39 | 0 | 156 | 226 | 127 | 197 | 1.11e-14 | 73.6 |
| Msa0535410 | AT2G20570.1 | 53.448 | 58 | 27 | 0 | 169 | 226 | 152 | 209 | 1.33e-14 | 74.3 |
| Msa0535410 | AT5G05090.1 | 46.067 | 89 | 36 | 3 | 138 | 226 | 61 | 137 | 2.03e-14 | 72.4 |
| Msa0535410 | AT3G10760.1 | 47.887 | 71 | 36 | 1 | 156 | 226 | 92 | 161 | 3.21e-14 | 72.8 |
| Msa0535410 | AT3G04030.1 | 57.407 | 54 | 22 | 1 | 170 | 222 | 45 | 98 | 4.17e-14 | 72.8 |
| Msa0535410 | AT2G40970.1 | 51.724 | 58 | 28 | 0 | 169 | 226 | 104 | 161 | 4.77e-14 | 71.2 |
| Msa0535410 | AT3G04030.3 | 57.407 | 54 | 22 | 1 | 170 | 222 | 45 | 98 | 4.86e-14 | 72.4 |
| Msa0535410 | AT3G46640.3 | 45.679 | 81 | 41 | 2 | 146 | 226 | 123 | 200 | 5.13e-14 | 72.0 |
| Msa0535410 | AT3G46640.2 | 45.679 | 81 | 41 | 2 | 146 | 226 | 123 | 200 | 6.28e-14 | 71.6 |
| Msa0535410 | AT3G46640.1 | 45.679 | 81 | 41 | 2 | 146 | 226 | 123 | 200 | 6.28e-14 | 71.6 |
| Msa0535410 | AT2G20570.2 | 41.573 | 89 | 44 | 1 | 146 | 226 | 137 | 225 | 8.34e-14 | 72.0 |
| Msa0535410 | AT5G18240.2 | 57.407 | 54 | 22 | 1 | 170 | 222 | 45 | 98 | 1.01e-13 | 71.6 |
| Msa0535410 | AT5G18240.3 | 57.407 | 54 | 22 | 1 | 170 | 222 | 45 | 98 | 1.01e-13 | 71.6 |
| Msa0535410 | AT4G18020.8 | 40.789 | 76 | 42 | 1 | 152 | 227 | 281 | 353 | 1.07e-13 | 72.0 |
| Msa0535410 | AT4G18020.11 | 40.789 | 76 | 42 | 1 | 152 | 227 | 281 | 353 | 1.07e-13 | 72.0 |
| Msa0535410 | AT4G18020.4 | 40.789 | 76 | 42 | 1 | 152 | 227 | 281 | 353 | 1.07e-13 | 72.0 |
| Msa0535410 | AT4G18020.5 | 40.789 | 76 | 42 | 1 | 152 | 227 | 281 | 353 | 1.07e-13 | 72.0 |
| Msa0535410 | AT4G18020.10 | 40.789 | 76 | 42 | 1 | 152 | 227 | 281 | 353 | 1.07e-13 | 72.0 |
| Msa0535410 | AT4G18020.7 | 40.789 | 76 | 42 | 1 | 152 | 227 | 281 | 353 | 1.07e-13 | 72.0 |
| Msa0535410 | AT4G18020.3 | 40.789 | 76 | 42 | 1 | 152 | 227 | 281 | 353 | 1.08e-13 | 72.0 |
| Msa0535410 | AT4G18020.2 | 40.789 | 76 | 42 | 1 | 152 | 227 | 281 | 353 | 1.08e-13 | 72.0 |
| Msa0535410 | AT4G18020.1 | 40.789 | 76 | 42 | 1 | 152 | 227 | 281 | 353 | 1.08e-13 | 72.0 |
| Msa0535410 | AT4G18020.6 | 40.789 | 76 | 42 | 1 | 152 | 227 | 281 | 353 | 1.08e-13 | 72.0 |
| Msa0535410 | AT4G18020.9 | 40.789 | 76 | 42 | 1 | 152 | 227 | 281 | 353 | 1.08e-13 | 72.0 |
| Msa0535410 | AT5G18240.5 | 57.407 | 54 | 22 | 1 | 170 | 222 | 45 | 98 | 1.14e-13 | 71.6 |
| Msa0535410 | AT5G18240.1 | 57.407 | 54 | 22 | 1 | 170 | 222 | 45 | 98 | 1.16e-13 | 71.6 |
| Msa0535410 | AT5G18240.4 | 57.407 | 54 | 22 | 1 | 170 | 222 | 45 | 98 | 1.16e-13 | 71.6 |
| Msa0535410 | AT3G04030.2 | 54.717 | 53 | 24 | 0 | 170 | 222 | 45 | 97 | 2.80e-13 | 70.1 |
| Msa0535410 | AT3G04450.3 | 50.000 | 58 | 28 | 1 | 166 | 222 | 234 | 291 | 1.05e-12 | 68.2 |
| Msa0535410 | AT2G01060.1 | 49.398 | 83 | 36 | 3 | 159 | 238 | 7 | 86 | 1.49e-12 | 67.4 |
| Msa0535410 | AT3G04450.1 | 50.000 | 58 | 28 | 1 | 166 | 222 | 234 | 291 | 1.71e-12 | 68.2 |
| Msa0535410 | AT3G04450.4 | 50.000 | 58 | 28 | 1 | 166 | 222 | 194 | 251 | 1.90e-12 | 67.8 |
| Msa0535410 | AT3G04450.2 | 50.000 | 58 | 28 | 1 | 166 | 222 | 194 | 251 | 1.90e-12 | 67.8 |
| Msa0535410 | AT4G28610.1 | 59.259 | 54 | 21 | 1 | 170 | 222 | 225 | 278 | 2.20e-12 | 67.8 |
| Msa0535410 | AT1G69580.1 | 50.000 | 54 | 26 | 1 | 170 | 222 | 34 | 87 | 6.26e-11 | 62.8 |
| Msa0535410 | AT1G69580.2 | 50.000 | 54 | 26 | 1 | 170 | 222 | 34 | 87 | 6.83e-11 | 62.8 |
Find 60 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTGTTTGACTGAAAATA+AGG | 0.266188 | 4_1:+11702573 | Msa0535410:CDS |
| ACATGTTGCCAGCCATTTAC+AGG | 0.283862 | 4_1:+11702903 | Msa0535410:CDS |
| AGAAACCGCTGATGCAGTTC+TGG | 0.337779 | 4_1:-11702706 | None:intergenic |
| CTTTCTTTCCATCGAATTCA+AGG | 0.361862 | 4_1:-11702206 | None:intergenic |
| TTCAGAAGCTGTATTGCATT+TGG | 0.371701 | 4_1:-11702182 | None:intergenic |
| CACATATTGGACTAAGCCTT+TGG | 0.377509 | 4_1:+11702504 | Msa0535410:CDS |
| GATAAATCATCATCAACATA+TGG | 0.380393 | 4_1:-11703507 | None:intergenic |
| TGGCAACATGTAGTAAGAAT+TGG | 0.394902 | 4_1:+11702550 | Msa0535410:CDS |
| TGACAGGAATGTTGAGTTGT+AGG | 0.408636 | 4_1:-11702303 | None:intergenic |
| AATATTGTGTGGTTGAATTC+AGG | 0.418564 | 4_1:-11703392 | None:intergenic |
| ACGCTAAATTGTGTTTCAAA+AGG | 0.431875 | 4_1:-11703327 | None:intergenic |
| CAAAGAAAGCCCGTTTGTCT+TGG | 0.433267 | 4_1:+11702680 | Msa0535410:CDS |
| GGTTCAAGAAAATAGAAAAC+GGG | 0.441425 | 4_1:+11702621 | Msa0535410:CDS |
| CATCTCCTCAATAGAGTTGA+GGG | 0.445728 | 4_1:-11701986 | None:intergenic |
| TTGAGACCGGCTGGGAATGA+TGG | 0.453544 | 4_1:-11701934 | None:intergenic |
| AAGTCATAAACATCCATGTT+TGG | 0.458271 | 4_1:-11702265 | None:intergenic |
| AATAAGGAATATGAAATTGT+TGG | 0.459765 | 4_1:+11702589 | Msa0535410:CDS |
| AATAAATTCTTACTAATGAC+AGG | 0.461511 | 4_1:-11702319 | None:intergenic |
| TGTAATCGATATCATTATCA+AGG | 0.463829 | 4_1:+11702009 | Msa0535410:CDS |
| TCAACATATGGGAACAAGTT+GGG | 0.468173 | 4_1:-11703495 | None:intergenic |
| TTCTGGCGACCAAGACAAAC+GGG | 0.471359 | 4_1:-11702689 | None:intergenic |
| TACTCACTCAATGCCGGAGC+AGG | 0.473606 | 4_1:+11703356 | Msa0535410:CDS |
| GCAATAACCTTGAGACCGGC+TGG | 0.475576 | 4_1:-11701943 | None:intergenic |
| AGTGTGGGGCTTGCACATAT+TGG | 0.484931 | 4_1:+11702491 | Msa0535410:CDS |
| GTTCTGGCGACCAAGACAAA+CGG | 0.486036 | 4_1:-11702690 | None:intergenic |
| CTTGAATTCGATGGAAAGAA+AGG | 0.488990 | 4_1:+11702207 | Msa0535410:CDS |
| CTATATGCTGTCAATCAACT+AGG | 0.499504 | 4_1:+11702727 | Msa0535410:CDS |
| TGGTTCAAGAAAATAGAAAA+CGG | 0.501089 | 4_1:+11702620 | Msa0535410:CDS |
| TGATGCTCATTTGCCAAACA+TGG | 0.502558 | 4_1:+11702252 | Msa0535410:CDS |
| AGAAAAGAATCATACTATCA+AGG | 0.510494 | 4_1:-11702750 | None:intergenic |
| GACAGGAATGTTGAGTTGTA+GGG | 0.519779 | 4_1:-11702302 | None:intergenic |
| ATTATGAAGTCTATTGAGTG+TGG | 0.533506 | 4_1:+11702475 | Msa0535410:CDS |
| AAAAGGAACCTGTAAATGGC+TGG | 0.535907 | 4_1:-11702911 | None:intergenic |
| TTCTGAAGCCTTGAATTCGA+TGG | 0.535925 | 4_1:+11702198 | Msa0535410:CDS |
| TTATGAAGTCTATTGAGTGT+GGG | 0.536693 | 4_1:+11702476 | Msa0535410:CDS |
| CGACACACAACAACAATGGA+TGG | 0.536913 | 4_1:+11703428 | Msa0535410:CDS |
| ATATGAAATTGTTGGAAGCT+CGG | 0.539488 | 4_1:+11702597 | Msa0535410:CDS |
| AGAAAACTGTGGTCCTGCTC+CGG | 0.546272 | 4_1:-11703369 | None:intergenic |
| ATAAATCATCATCAACATAT+GGG | 0.548211 | 4_1:-11703506 | None:intergenic |
| CTTCATAATAGAACTTTCTG+TGG | 0.551255 | 4_1:-11702461 | None:intergenic |
| ATCATTCCCAGCCGGTCTCA+AGG | 0.552068 | 4_1:+11701936 | Msa0535410:CDS |
| CACTTCCCTCAACTCTATTG+AGG | 0.555134 | 4_1:+11701981 | Msa0535410:CDS |
| ATCAACATATGGGAACAAGT+TGG | 0.563419 | 4_1:-11703496 | None:intergenic |
| AATAGAAAACGGGGTAGAGA+AGG | 0.574777 | 4_1:+11702631 | Msa0535410:CDS |
| AGAAGCTACTCACTCAATGC+CGG | 0.575449 | 4_1:+11703350 | Msa0535410:CDS |
| TGAGACCGGCTGGGAATGAT+GGG | 0.577892 | 4_1:-11701933 | None:intergenic |
| AATTGCAATAACCTTGAGAC+CGG | 0.581075 | 4_1:-11701947 | None:intergenic |
| ACATCTCCTCAATAGAGTTG+AGG | 0.585624 | 4_1:-11701987 | None:intergenic |
| TATGAAGTCTATTGAGTGTG+GGG | 0.592079 | 4_1:+11702477 | Msa0535410:CDS |
| GGTCGCCAGAACTGCATCAG+CGG | 0.609761 | 4_1:+11702701 | Msa0535410:CDS |
| CAATAACCTTGAGACCGGCT+GGG | 0.613963 | 4_1:-11701942 | None:intergenic |
| GACAACCCATCATTCCCAGC+CGG | 0.620153 | 4_1:+11701928 | Msa0535410:CDS |
| ATTGCGACACACAACAACAA+TGG | 0.625759 | 4_1:+11703424 | Msa0535410:CDS |
| TCTTACTACATGTTGCCACA+TGG | 0.630006 | 4_1:-11702545 | None:intergenic |
| TGAAATTGTTGGAAGCTCGG+TGG | 0.670504 | 4_1:+11702600 | Msa0535410:CDS |
| ATGATTTATCATCACTTGTG+TGG | 0.696325 | 4_1:+11703520 | Msa0535410:CDS |
| TGAGTTGTAGGGTAACATGT+CGG | 0.700482 | 4_1:-11702291 | None:intergenic |
| ATTGTCATGACAATATTGTG+TGG | 0.721410 | 4_1:-11703403 | None:intergenic |
| GTTCAAGAAAATAGAAAACG+GGG | 0.742093 | 4_1:+11702622 | Msa0535410:CDS |
| TTGAATTCAGGAGAAAACTG+TGG | 0.744675 | 4_1:-11703380 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTGATTTTAAATGAAATTTA+TGG | + | chr4_1:11703190-11703209 | Msa0535410:intron | 15.0% |
| !!! | GTGATTTTAAATGAAATTTA+TGG | + | chr4_1:11703190-11703209 | Msa0535410:intron | 15.0% |
| !!! | AGAAACTTTAGAATTGAATA+AGG | - | chr4_1:11702056-11702075 | None:intergenic | 20.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | - | chr4_1:11702322-11702341 | None:intergenic | 20.0% |
| !! | AATAAGGAATATGAAATTGT+TGG | + | chr4_1:11702589-11702608 | Msa0535410:CDS | 20.0% |
| !!! | ATGTTTTTCTCTTAATTTTC+AGG | + | chr4_1:11702826-11702845 | Msa0535410:intron | 20.0% |
| !!! | TGTTTTTCTCTTAATTTTCA+GGG | + | chr4_1:11702827-11702846 | Msa0535410:intron | 20.0% |
| !!! | ATGATTTTCAGAATCTTTTT+TGG | - | chr4_1:11702859-11702878 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTCTGAAAATCA+TGG | + | chr4_1:11702858-11702877 | Msa0535410:CDS | 20.0% |
| !!! | AACATGTTCTTTTTTCATAT+CGG | - | chr4_1:11702890-11702909 | None:intergenic | 20.0% |
| !! | TCAACAAAATTTATGCAAAA+AGG | - | chr4_1:11702931-11702950 | None:intergenic | 20.0% |
| !!! | TTCATTTAAAATCACACAAA+AGG | - | chr4_1:11703185-11703204 | None:intergenic | 20.0% |
| !! | AAAAATGTTGTTAGTAATGT+CGG | - | chr4_1:11703466-11703485 | None:intergenic | 20.0% |
| !! | ATAAATCATCATCAACATAT+GGG | - | chr4_1:11703509-11703528 | None:intergenic | 20.0% |
| !!! | AGAAACTTTAGAATTGAATA+AGG | - | chr4_1:11702056-11702075 | None:intergenic | 20.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | - | chr4_1:11702322-11702341 | None:intergenic | 20.0% |
| !! | AATAAGGAATATGAAATTGT+TGG | + | chr4_1:11702589-11702608 | Msa0535410:CDS | 20.0% |
| !!! | ATGTTTTTCTCTTAATTTTC+AGG | + | chr4_1:11702826-11702845 | Msa0535410:intron | 20.0% |
| !!! | TGTTTTTCTCTTAATTTTCA+GGG | + | chr4_1:11702827-11702846 | Msa0535410:intron | 20.0% |
| !!! | ATGATTTTCAGAATCTTTTT+TGG | - | chr4_1:11702859-11702878 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTCTGAAAATCA+TGG | + | chr4_1:11702858-11702877 | Msa0535410:CDS | 20.0% |
| !!! | AACATGTTCTTTTTTCATAT+CGG | - | chr4_1:11702890-11702909 | None:intergenic | 20.0% |
| !! | TCAACAAAATTTATGCAAAA+AGG | - | chr4_1:11702931-11702950 | None:intergenic | 20.0% |
| !!! | TTCATTTAAAATCACACAAA+AGG | - | chr4_1:11703185-11703204 | None:intergenic | 20.0% |
| !! | AAAAATGTTGTTAGTAATGT+CGG | - | chr4_1:11703466-11703485 | None:intergenic | 20.0% |
| !! | ATAAATCATCATCAACATAT+GGG | - | chr4_1:11703509-11703528 | None:intergenic | 20.0% |
| ! | TGTAATCGATATCATTATCA+AGG | + | chr4_1:11702009-11702028 | Msa0535410:CDS | 25.0% |
| !!! | TTATTTCTCTTTTGTAGTGA+TGG | + | chr4_1:11702429-11702448 | Msa0535410:intron | 25.0% |
| ! | AAACTGTTTGACTGAAAATA+AGG | + | chr4_1:11702573-11702592 | Msa0535410:CDS | 25.0% |
| ! | TGGTTCAAGAAAATAGAAAA+CGG | + | chr4_1:11702620-11702639 | Msa0535410:CDS | 25.0% |
| ! | AGAAAAGAATCATACTATCA+AGG | - | chr4_1:11702753-11702772 | None:intergenic | 25.0% |
| !! | GTTTTTCTCTTAATTTTCAG+GGG | + | chr4_1:11702828-11702847 | Msa0535410:intron | 25.0% |
| !!! | ACATGTTCTTTTTTCATATC+GGG | - | chr4_1:11702889-11702908 | None:intergenic | 25.0% |
| ! | AAAATTACAACAACAGAGTT+AGG | - | chr4_1:11703015-11703034 | None:intergenic | 25.0% |
| ! | TTTAATAACATGCAAGACTA+AGG | - | chr4_1:11703061-11703080 | None:intergenic | 25.0% |
| ! | AAAGGATATATAGAAGCTAA+TGG | - | chr4_1:11703167-11703186 | None:intergenic | 25.0% |
| ! | GTAGAATGAAAAAATCAAAG+AGG | + | chr4_1:11703301-11703320 | Msa0535410:CDS | 25.0% |
| ! | GATAAATCATCATCAACATA+TGG | - | chr4_1:11703510-11703529 | None:intergenic | 25.0% |
| ! | TGTAATCGATATCATTATCA+AGG | + | chr4_1:11702009-11702028 | Msa0535410:CDS | 25.0% |
| !!! | TTATTTCTCTTTTGTAGTGA+TGG | + | chr4_1:11702429-11702448 | Msa0535410:intron | 25.0% |
| ! | AAACTGTTTGACTGAAAATA+AGG | + | chr4_1:11702573-11702592 | Msa0535410:CDS | 25.0% |
| ! | TGGTTCAAGAAAATAGAAAA+CGG | + | chr4_1:11702620-11702639 | Msa0535410:CDS | 25.0% |
| ! | AGAAAAGAATCATACTATCA+AGG | - | chr4_1:11702753-11702772 | None:intergenic | 25.0% |
| !! | GTTTTTCTCTTAATTTTCAG+GGG | + | chr4_1:11702828-11702847 | Msa0535410:intron | 25.0% |
| !!! | ACATGTTCTTTTTTCATATC+GGG | - | chr4_1:11702889-11702908 | None:intergenic | 25.0% |
| ! | AAAATTACAACAACAGAGTT+AGG | - | chr4_1:11703015-11703034 | None:intergenic | 25.0% |
| ! | TTTAATAACATGCAAGACTA+AGG | - | chr4_1:11703061-11703080 | None:intergenic | 25.0% |
| ! | AAAGGATATATAGAAGCTAA+TGG | - | chr4_1:11703167-11703186 | None:intergenic | 25.0% |
| ! | GTAGAATGAAAAAATCAAAG+AGG | + | chr4_1:11703301-11703320 | Msa0535410:CDS | 25.0% |
| ! | GATAAATCATCATCAACATA+TGG | - | chr4_1:11703510-11703529 | None:intergenic | 25.0% |
| AAGTCATAAACATCCATGTT+TGG | - | chr4_1:11702268-11702287 | None:intergenic | 30.0% | |
| CTTCATAATAGAACTTTCTG+TGG | - | chr4_1:11702464-11702483 | None:intergenic | 30.0% | |
| ATTATGAAGTCTATTGAGTG+TGG | + | chr4_1:11702475-11702494 | Msa0535410:CDS | 30.0% | |
| TTATGAAGTCTATTGAGTGT+GGG | + | chr4_1:11702476-11702495 | Msa0535410:CDS | 30.0% | |
| ATATGAAATTGTTGGAAGCT+CGG | + | chr4_1:11702597-11702616 | Msa0535410:CDS | 30.0% | |
| GGTTCAAGAAAATAGAAAAC+GGG | + | chr4_1:11702621-11702640 | Msa0535410:CDS | 30.0% | |
| GTTCAAGAAAATAGAAAACG+GGG | + | chr4_1:11702622-11702641 | Msa0535410:CDS | 30.0% | |
| !!! | CATTCTACCTTTTTTCTCTT+CGG | - | chr4_1:11703289-11703308 | None:intergenic | 30.0% |
| ACGCTAAATTGTGTTTCAAA+AGG | - | chr4_1:11703330-11703349 | None:intergenic | 30.0% | |
| AATATTGTGTGGTTGAATTC+AGG | - | chr4_1:11703395-11703414 | None:intergenic | 30.0% | |
| ATTGTCATGACAATATTGTG+TGG | - | chr4_1:11703406-11703425 | None:intergenic | 30.0% | |
| ATGATTTATCATCACTTGTG+TGG | + | chr4_1:11703520-11703539 | Msa0535410:CDS | 30.0% | |
| AAGTCATAAACATCCATGTT+TGG | - | chr4_1:11702268-11702287 | None:intergenic | 30.0% | |
| CTTCATAATAGAACTTTCTG+TGG | - | chr4_1:11702464-11702483 | None:intergenic | 30.0% | |
| ATTATGAAGTCTATTGAGTG+TGG | + | chr4_1:11702475-11702494 | Msa0535410:CDS | 30.0% | |
| TTATGAAGTCTATTGAGTGT+GGG | + | chr4_1:11702476-11702495 | Msa0535410:CDS | 30.0% | |
| ATATGAAATTGTTGGAAGCT+CGG | + | chr4_1:11702597-11702616 | Msa0535410:CDS | 30.0% | |
| GGTTCAAGAAAATAGAAAAC+GGG | + | chr4_1:11702621-11702640 | Msa0535410:CDS | 30.0% | |
| GTTCAAGAAAATAGAAAACG+GGG | + | chr4_1:11702622-11702641 | Msa0535410:CDS | 30.0% | |
| !!! | CATTCTACCTTTTTTCTCTT+CGG | - | chr4_1:11703289-11703308 | None:intergenic | 30.0% |
| ACGCTAAATTGTGTTTCAAA+AGG | - | chr4_1:11703330-11703349 | None:intergenic | 30.0% | |
| AATATTGTGTGGTTGAATTC+AGG | - | chr4_1:11703395-11703414 | None:intergenic | 30.0% | |
| ATTGTCATGACAATATTGTG+TGG | - | chr4_1:11703406-11703425 | None:intergenic | 30.0% | |
| ATGATTTATCATCACTTGTG+TGG | + | chr4_1:11703520-11703539 | Msa0535410:CDS | 30.0% | |
| AATTGCAATAACCTTGAGAC+CGG | - | chr4_1:11701950-11701969 | None:intergenic | 35.0% | |
| TTCAGAAGCTGTATTGCATT+TGG | - | chr4_1:11702185-11702204 | None:intergenic | 35.0% | |
| CTTTCTTTCCATCGAATTCA+AGG | - | chr4_1:11702209-11702228 | None:intergenic | 35.0% | |
| CTTGAATTCGATGGAAAGAA+AGG | + | chr4_1:11702207-11702226 | Msa0535410:CDS | 35.0% | |
| TATGAAGTCTATTGAGTGTG+GGG | + | chr4_1:11702477-11702496 | Msa0535410:CDS | 35.0% | |
| TAAGCCTTTGGTTGAAAAAG+AGG | + | chr4_1:11702516-11702535 | Msa0535410:CDS | 35.0% | |
| !!! | TTGACCTCTTTTTCAACCAA+AGG | - | chr4_1:11702523-11702542 | None:intergenic | 35.0% |
| TGGCAACATGTAGTAAGAAT+TGG | + | chr4_1:11702550-11702569 | Msa0535410:CDS | 35.0% | |
| ! | CTTTGCAAGTGTTTCTTTTG+AGG | - | chr4_1:11702665-11702684 | None:intergenic | 35.0% |
| CTATATGCTGTCAATCAACT+AGG | + | chr4_1:11702727-11702746 | Msa0535410:CDS | 35.0% | |
| TGCAAAAAGGAACCTGTAAA+TGG | - | chr4_1:11702918-11702937 | None:intergenic | 35.0% | |
| AAAAGATCACTGACAAACCT+AGG | - | chr4_1:11702991-11703010 | None:intergenic | 35.0% | |
| TTGAATTCAGGAGAAAACTG+TGG | - | chr4_1:11703383-11703402 | None:intergenic | 35.0% | |
| TCAACATATGGGAACAAGTT+GGG | - | chr4_1:11703498-11703517 | None:intergenic | 35.0% | |
| ATCAACATATGGGAACAAGT+TGG | - | chr4_1:11703499-11703518 | None:intergenic | 35.0% | |
| AATTGCAATAACCTTGAGAC+CGG | - | chr4_1:11701950-11701969 | None:intergenic | 35.0% | |
| TTCAGAAGCTGTATTGCATT+TGG | - | chr4_1:11702185-11702204 | None:intergenic | 35.0% | |
| CTTTCTTTCCATCGAATTCA+AGG | - | chr4_1:11702209-11702228 | None:intergenic | 35.0% | |
| CTTGAATTCGATGGAAAGAA+AGG | + | chr4_1:11702207-11702226 | Msa0535410:CDS | 35.0% | |
| TATGAAGTCTATTGAGTGTG+GGG | + | chr4_1:11702477-11702496 | Msa0535410:CDS | 35.0% | |
| TAAGCCTTTGGTTGAAAAAG+AGG | + | chr4_1:11702516-11702535 | Msa0535410:CDS | 35.0% | |
| !!! | TTGACCTCTTTTTCAACCAA+AGG | - | chr4_1:11702523-11702542 | None:intergenic | 35.0% |
| TGGCAACATGTAGTAAGAAT+TGG | + | chr4_1:11702550-11702569 | Msa0535410:CDS | 35.0% | |
| ! | CTTTGCAAGTGTTTCTTTTG+AGG | - | chr4_1:11702665-11702684 | None:intergenic | 35.0% |
| CTATATGCTGTCAATCAACT+AGG | + | chr4_1:11702727-11702746 | Msa0535410:CDS | 35.0% | |
| TGCAAAAAGGAACCTGTAAA+TGG | - | chr4_1:11702918-11702937 | None:intergenic | 35.0% | |
| AAAAGATCACTGACAAACCT+AGG | - | chr4_1:11702991-11703010 | None:intergenic | 35.0% | |
| TTGAATTCAGGAGAAAACTG+TGG | - | chr4_1:11703383-11703402 | None:intergenic | 35.0% | |
| TCAACATATGGGAACAAGTT+GGG | - | chr4_1:11703498-11703517 | None:intergenic | 35.0% | |
| ATCAACATATGGGAACAAGT+TGG | - | chr4_1:11703499-11703518 | None:intergenic | 35.0% | |
| CATCTCCTCAATAGAGTTGA+GGG | - | chr4_1:11701989-11702008 | None:intergenic | 40.0% | |
| ACATCTCCTCAATAGAGTTG+AGG | - | chr4_1:11701990-11702009 | None:intergenic | 40.0% | |
| !! | TTCTGAAGCCTTGAATTCGA+TGG | + | chr4_1:11702198-11702217 | Msa0535410:CDS | 40.0% |
| TGATGCTCATTTGCCAAACA+TGG | + | chr4_1:11702252-11702271 | Msa0535410:CDS | 40.0% | |
| TGAGTTGTAGGGTAACATGT+CGG | - | chr4_1:11702294-11702313 | None:intergenic | 40.0% | |
| ! | GACAGGAATGTTGAGTTGTA+GGG | - | chr4_1:11702305-11702324 | None:intergenic | 40.0% |
| ! | TGACAGGAATGTTGAGTTGT+AGG | - | chr4_1:11702306-11702325 | None:intergenic | 40.0% |
| CACATATTGGACTAAGCCTT+TGG | + | chr4_1:11702504-11702523 | Msa0535410:CDS | 40.0% | |
| AAAAAGAGGTCAAGACCATG+TGG | + | chr4_1:11702530-11702549 | Msa0535410:CDS | 40.0% | |
| TCTTACTACATGTTGCCACA+TGG | - | chr4_1:11702548-11702567 | None:intergenic | 40.0% | |
| AATAGAAAACGGGGTAGAGA+AGG | + | chr4_1:11702631-11702650 | Msa0535410:CDS | 40.0% | |
| AAAAGGAACCTGTAAATGGC+TGG | - | chr4_1:11702914-11702933 | None:intergenic | 40.0% | |
| AAACCTAGGCAACTAGACTT+AGG | - | chr4_1:11702977-11702996 | None:intergenic | 40.0% | |
| AGTAGTGAATTCTGCAGTCA+TGG | + | chr4_1:11703097-11703116 | Msa0535410:intron | 40.0% | |
| AGCTCAACCGAAGAGAAAAA+AGG | + | chr4_1:11703279-11703298 | Msa0535410:CDS | 40.0% | |
| ATTGCGACACACAACAACAA+TGG | + | chr4_1:11703424-11703443 | Msa0535410:CDS | 40.0% | |
| CATCTCCTCAATAGAGTTGA+GGG | - | chr4_1:11701989-11702008 | None:intergenic | 40.0% | |
| ACATCTCCTCAATAGAGTTG+AGG | - | chr4_1:11701990-11702009 | None:intergenic | 40.0% | |
| !! | TTCTGAAGCCTTGAATTCGA+TGG | + | chr4_1:11702198-11702217 | Msa0535410:CDS | 40.0% |
| TGATGCTCATTTGCCAAACA+TGG | + | chr4_1:11702252-11702271 | Msa0535410:CDS | 40.0% | |
| TGAGTTGTAGGGTAACATGT+CGG | - | chr4_1:11702294-11702313 | None:intergenic | 40.0% | |
| ! | GACAGGAATGTTGAGTTGTA+GGG | - | chr4_1:11702305-11702324 | None:intergenic | 40.0% |
| ! | TGACAGGAATGTTGAGTTGT+AGG | - | chr4_1:11702306-11702325 | None:intergenic | 40.0% |
| CACATATTGGACTAAGCCTT+TGG | + | chr4_1:11702504-11702523 | Msa0535410:CDS | 40.0% | |
| AAAAAGAGGTCAAGACCATG+TGG | + | chr4_1:11702530-11702549 | Msa0535410:CDS | 40.0% | |
| TCTTACTACATGTTGCCACA+TGG | - | chr4_1:11702548-11702567 | None:intergenic | 40.0% | |
| AATAGAAAACGGGGTAGAGA+AGG | + | chr4_1:11702631-11702650 | Msa0535410:CDS | 40.0% | |
| AAAAGGAACCTGTAAATGGC+TGG | - | chr4_1:11702914-11702933 | None:intergenic | 40.0% | |
| AAACCTAGGCAACTAGACTT+AGG | - | chr4_1:11702977-11702996 | None:intergenic | 40.0% | |
| AGTAGTGAATTCTGCAGTCA+TGG | + | chr4_1:11703097-11703116 | Msa0535410:intron | 40.0% | |
| AGCTCAACCGAAGAGAAAAA+AGG | + | chr4_1:11703279-11703298 | Msa0535410:CDS | 40.0% | |
| ATTGCGACACACAACAACAA+TGG | + | chr4_1:11703424-11703443 | Msa0535410:CDS | 40.0% | |
| CACTTCCCTCAACTCTATTG+AGG | + | chr4_1:11701981-11702000 | Msa0535410:CDS | 45.0% | |
| TGAAATTGTTGGAAGCTCGG+TGG | + | chr4_1:11702600-11702619 | Msa0535410:CDS | 45.0% | |
| CAAAGAAAGCCCGTTTGTCT+TGG | + | chr4_1:11702680-11702699 | Msa0535410:CDS | 45.0% | |
| ACATGTTGCCAGCCATTTAC+AGG | + | chr4_1:11702903-11702922 | Msa0535410:CDS | 45.0% | |
| GTACCTAAGTCTAGTTGCCT+AGG | + | chr4_1:11702971-11702990 | Msa0535410:intron | 45.0% | |
| AGAAGCTACTCACTCAATGC+CGG | + | chr4_1:11703350-11703369 | Msa0535410:CDS | 45.0% | |
| CGACACACAACAACAATGGA+TGG | + | chr4_1:11703428-11703447 | Msa0535410:CDS | 45.0% | |
| CACTTCCCTCAACTCTATTG+AGG | + | chr4_1:11701981-11702000 | Msa0535410:CDS | 45.0% | |
| TGAAATTGTTGGAAGCTCGG+TGG | + | chr4_1:11702600-11702619 | Msa0535410:CDS | 45.0% | |
| CAAAGAAAGCCCGTTTGTCT+TGG | + | chr4_1:11702680-11702699 | Msa0535410:CDS | 45.0% | |
| ACATGTTGCCAGCCATTTAC+AGG | + | chr4_1:11702903-11702922 | Msa0535410:CDS | 45.0% | |
| GTACCTAAGTCTAGTTGCCT+AGG | + | chr4_1:11702971-11702990 | Msa0535410:intron | 45.0% | |
| AGAAGCTACTCACTCAATGC+CGG | + | chr4_1:11703350-11703369 | Msa0535410:CDS | 45.0% | |
| CGACACACAACAACAATGGA+TGG | + | chr4_1:11703428-11703447 | Msa0535410:CDS | 45.0% | |
| CAATAACCTTGAGACCGGCT+GGG | - | chr4_1:11701945-11701964 | None:intergenic | 50.0% | |
| AGTGTGGGGCTTGCACATAT+TGG | + | chr4_1:11702491-11702510 | Msa0535410:CDS | 50.0% | |
| TTCTGGCGACCAAGACAAAC+GGG | - | chr4_1:11702692-11702711 | None:intergenic | 50.0% | |
| GTTCTGGCGACCAAGACAAA+CGG | - | chr4_1:11702693-11702712 | None:intergenic | 50.0% | |
| AGAAACCGCTGATGCAGTTC+TGG | - | chr4_1:11702709-11702728 | None:intergenic | 50.0% | |
| AGAAAACTGTGGTCCTGCTC+CGG | - | chr4_1:11703372-11703391 | None:intergenic | 50.0% | |
| CAATAACCTTGAGACCGGCT+GGG | - | chr4_1:11701945-11701964 | None:intergenic | 50.0% | |
| AGTGTGGGGCTTGCACATAT+TGG | + | chr4_1:11702491-11702510 | Msa0535410:CDS | 50.0% | |
| TTCTGGCGACCAAGACAAAC+GGG | - | chr4_1:11702692-11702711 | None:intergenic | 50.0% | |
| GTTCTGGCGACCAAGACAAA+CGG | - | chr4_1:11702693-11702712 | None:intergenic | 50.0% | |
| AGAAACCGCTGATGCAGTTC+TGG | - | chr4_1:11702709-11702728 | None:intergenic | 50.0% | |
| AGAAAACTGTGGTCCTGCTC+CGG | - | chr4_1:11703372-11703391 | None:intergenic | 50.0% | |
| GACAACCCATCATTCCCAGC+CGG | + | chr4_1:11701928-11701947 | Msa0535410:CDS | 55.0% | |
| TGAGACCGGCTGGGAATGAT+GGG | - | chr4_1:11701936-11701955 | None:intergenic | 55.0% | |
| TTGAGACCGGCTGGGAATGA+TGG | - | chr4_1:11701937-11701956 | None:intergenic | 55.0% | |
| ATCATTCCCAGCCGGTCTCA+AGG | + | chr4_1:11701936-11701955 | Msa0535410:CDS | 55.0% | |
| GCAATAACCTTGAGACCGGC+TGG | - | chr4_1:11701946-11701965 | None:intergenic | 55.0% | |
| TACTCACTCAATGCCGGAGC+AGG | + | chr4_1:11703356-11703375 | Msa0535410:CDS | 55.0% | |
| GACAACCCATCATTCCCAGC+CGG | + | chr4_1:11701928-11701947 | Msa0535410:CDS | 55.0% | |
| TGAGACCGGCTGGGAATGAT+GGG | - | chr4_1:11701936-11701955 | None:intergenic | 55.0% | |
| TTGAGACCGGCTGGGAATGA+TGG | - | chr4_1:11701937-11701956 | None:intergenic | 55.0% | |
| ATCATTCCCAGCCGGTCTCA+AGG | + | chr4_1:11701936-11701955 | Msa0535410:CDS | 55.0% | |
| GCAATAACCTTGAGACCGGC+TGG | - | chr4_1:11701946-11701965 | None:intergenic | 55.0% | |
| TACTCACTCAATGCCGGAGC+AGG | + | chr4_1:11703356-11703375 | Msa0535410:CDS | 55.0% | |
| GGTCGCCAGAACTGCATCAG+CGG | + | chr4_1:11702701-11702720 | Msa0535410:CDS | 60.0% | |
| GGTCGCCAGAACTGCATCAG+CGG | + | chr4_1:11702701-11702720 | Msa0535410:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 11701913 | 11703545 | 11701913 | ID=Msa0535410;Name=Msa0535410 |
| chr4_1 | mRNA | 11701913 | 11703545 | 11701913 | ID=Msa0535410-mRNA-1;Parent=Msa0535410;Name=Msa0535410-mRNA-1;_AED=0.09;_eAED=0.10;_QI=0|0|0|1|1|1|5|0|314 |
| chr4_1 | exon | 11701913 | 11702030 | 11701913 | ID=Msa0535410-mRNA-1:exon:3747;Parent=Msa0535410-mRNA-1 |
| chr4_1 | exon | 11702179 | 11702328 | 11702179 | ID=Msa0535410-mRNA-1:exon:3748;Parent=Msa0535410-mRNA-1 |
| chr4_1 | exon | 11702446 | 11702757 | 11702446 | ID=Msa0535410-mRNA-1:exon:3749;Parent=Msa0535410-mRNA-1 |
| chr4_1 | exon | 11702848 | 11702924 | 11702848 | ID=Msa0535410-mRNA-1:exon:3750;Parent=Msa0535410-mRNA-1 |
| chr4_1 | exon | 11703258 | 11703545 | 11703258 | ID=Msa0535410-mRNA-1:exon:3751;Parent=Msa0535410-mRNA-1 |
| chr4_1 | CDS | 11701913 | 11702030 | 11701913 | ID=Msa0535410-mRNA-1:cds;Parent=Msa0535410-mRNA-1 |
| chr4_1 | CDS | 11702179 | 11702328 | 11702179 | ID=Msa0535410-mRNA-1:cds;Parent=Msa0535410-mRNA-1 |
| chr4_1 | CDS | 11702446 | 11702757 | 11702446 | ID=Msa0535410-mRNA-1:cds;Parent=Msa0535410-mRNA-1 |
| chr4_1 | CDS | 11702848 | 11702924 | 11702848 | ID=Msa0535410-mRNA-1:cds;Parent=Msa0535410-mRNA-1 |
| chr4_1 | CDS | 11703258 | 11703545 | 11703258 | ID=Msa0535410-mRNA-1:cds;Parent=Msa0535410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
