Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535420 | XP_013455021.2 | 86.901 | 313 | 39 | 1 | 1 | 313 | 1 | 311 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535420 | sp|Q8L9Y3|ARR14_ARATH | 38.403 | 263 | 121 | 5 | 7 | 232 | 4 | 262 | 1.79e-54 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535420 | A0A396I0H3 | 84.395 | 314 | 46 | 2 | 1 | 313 | 1 | 312 | 0.0 | 546 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0535420 | TF | GARP-ARR-B |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535420 | MtrunA17_Chr4g0009851 | 84.395 | 314 | 46 | 2 | 1 | 313 | 1 | 312 | 0.0 | 546 |
| Msa0535420 | MtrunA17_Chr4g0009981 | 86.207 | 261 | 34 | 1 | 53 | 313 | 1 | 259 | 1.03e-169 | 471 |
| Msa0535420 | MtrunA17_Chr4g0009901 | 75.207 | 242 | 58 | 1 | 1 | 242 | 1 | 240 | 2.14e-128 | 367 |
| Msa0535420 | MtrunA17_Chr4g0011071 | 77.698 | 139 | 29 | 1 | 55 | 193 | 35 | 171 | 2.20e-73 | 224 |
| Msa0535420 | MtrunA17_Chr6g0471041 | 46.758 | 293 | 137 | 8 | 10 | 296 | 14 | 293 | 4.99e-71 | 226 |
| Msa0535420 | MtrunA17_Chr1g0161431 | 37.534 | 365 | 161 | 8 | 10 | 309 | 11 | 373 | 5.08e-68 | 223 |
| Msa0535420 | MtrunA17_Chr4g0009991 | 77.311 | 119 | 24 | 2 | 101 | 219 | 1 | 116 | 2.30e-57 | 181 |
| Msa0535420 | MtrunA17_Chr3g0123131 | 39.921 | 253 | 119 | 5 | 10 | 231 | 13 | 263 | 4.98e-57 | 193 |
| Msa0535420 | MtrunA17_Chr8g0376881 | 39.695 | 262 | 125 | 6 | 9 | 239 | 24 | 283 | 1.98e-56 | 191 |
| Msa0535420 | MtrunA17_Chr4g0067981 | 36.280 | 328 | 174 | 7 | 10 | 308 | 31 | 352 | 4.36e-55 | 189 |
| Msa0535420 | MtrunA17_Chr2g0294911 | 39.245 | 265 | 133 | 4 | 10 | 248 | 29 | 291 | 7.79e-55 | 187 |
| Msa0535420 | MtrunA17_Chr4g0010001 | 83.146 | 89 | 15 | 0 | 1 | 89 | 1 | 89 | 4.44e-51 | 164 |
| Msa0535420 | MtrunA17_Chr7g0275401 | 37.600 | 250 | 129 | 4 | 7 | 229 | 2 | 251 | 9.15e-50 | 167 |
| Msa0535420 | MtrunA17_Chr1g0149841 | 38.800 | 250 | 119 | 4 | 7 | 226 | 2 | 247 | 1.01e-49 | 172 |
| Msa0535420 | MtrunA17_Chr8g0391911 | 38.843 | 242 | 120 | 4 | 4 | 219 | 3 | 242 | 1.22e-49 | 166 |
| Msa0535420 | MtrunA17_Chr5g0423031 | 80.899 | 89 | 17 | 0 | 1 | 89 | 1 | 89 | 1.80e-47 | 157 |
| Msa0535420 | MtrunA17_Chr3g0137101 | 38.057 | 247 | 123 | 3 | 10 | 226 | 8 | 254 | 4.41e-47 | 167 |
| Msa0535420 | MtrunA17_Chr7g0275891 | 34.767 | 279 | 141 | 5 | 7 | 244 | 2 | 280 | 1.49e-46 | 160 |
| Msa0535420 | MtrunA17_Chr8g0383961 | 42.797 | 236 | 102 | 7 | 1 | 231 | 1 | 208 | 6.72e-46 | 156 |
| Msa0535420 | MtrunA17_Chr4g0074411 | 33.065 | 248 | 143 | 4 | 9 | 233 | 17 | 264 | 2.63e-42 | 154 |
| Msa0535420 | MtrunA17_Chr2g0304841 | 34.510 | 255 | 132 | 4 | 10 | 229 | 18 | 272 | 3.07e-42 | 154 |
| Msa0535420 | MtrunA17_Chr4g0074401 | 32.400 | 250 | 143 | 4 | 10 | 233 | 17 | 266 | 8.40e-42 | 152 |
| Msa0535420 | MtrunA17_Chr1g0149851 | 35.249 | 261 | 128 | 5 | 7 | 226 | 2 | 262 | 3.78e-41 | 150 |
| Msa0535420 | MtrunA17_Chr6g0456631 | 43.125 | 160 | 87 | 2 | 4 | 161 | 3 | 160 | 3.05e-40 | 138 |
| Msa0535420 | MtrunA17_Chr3g0134461 | 37.264 | 212 | 104 | 4 | 10 | 219 | 8 | 192 | 1.26e-38 | 135 |
| Msa0535420 | MtrunA17_Chr3g0134481 | 35.616 | 219 | 101 | 4 | 4 | 221 | 4 | 183 | 3.42e-37 | 131 |
| Msa0535420 | MtrunA17_Chr4g0074421 | 36.464 | 181 | 95 | 3 | 59 | 219 | 2 | 182 | 5.26e-36 | 128 |
| Msa0535420 | MtrunA17_Chr1g0149831 | 37.766 | 188 | 81 | 4 | 68 | 226 | 1 | 181 | 7.46e-31 | 115 |
| Msa0535420 | MtrunA17_Chr8g0350761 | 24.370 | 357 | 210 | 10 | 12 | 309 | 19 | 374 | 1.60e-22 | 97.4 |
| Msa0535420 | MtrunA17_Chr6g0473731 | 33.333 | 171 | 94 | 3 | 89 | 248 | 10 | 171 | 3.74e-21 | 93.2 |
| Msa0535420 | MtrunA17_Chr2g0324891 | 39.362 | 94 | 54 | 2 | 135 | 226 | 125 | 217 | 9.84e-15 | 74.3 |
| Msa0535420 | MtrunA17_Chr5g0417521 | 55.556 | 54 | 23 | 1 | 170 | 222 | 15 | 68 | 1.03e-13 | 70.9 |
| Msa0535420 | MtrunA17_Chr6g0461641 | 44.872 | 78 | 42 | 1 | 170 | 246 | 42 | 119 | 2.84e-13 | 69.7 |
| Msa0535420 | MtrunA17_Chr7g0261911 | 43.678 | 87 | 44 | 3 | 161 | 245 | 253 | 336 | 3.31e-13 | 70.1 |
| Msa0535420 | MtrunA17_Chr4g0040481 | 48.276 | 58 | 30 | 0 | 169 | 226 | 157 | 214 | 4.70e-13 | 69.3 |
| Msa0535420 | MtrunA17_Chr7g0254981 | 40.659 | 91 | 51 | 2 | 168 | 257 | 48 | 136 | 6.03e-13 | 67.8 |
| Msa0535420 | MtrunA17_Chr4g0042451 | 51.852 | 54 | 25 | 1 | 170 | 222 | 17 | 70 | 1.29e-12 | 67.4 |
| Msa0535420 | MtrunA17_Chr2g0321461 | 53.704 | 54 | 24 | 1 | 170 | 222 | 45 | 98 | 1.94e-12 | 67.4 |
| Msa0535420 | MtrunA17_Chr5g0400241 | 36.250 | 80 | 51 | 0 | 169 | 248 | 310 | 389 | 2.70e-12 | 67.4 |
| Msa0535420 | MtrunA17_Chr2g0291021 | 55.556 | 54 | 23 | 1 | 170 | 222 | 49 | 102 | 9.71e-12 | 64.7 |
| Msa0535420 | MtrunA17_Chr7g0274471 | 40.659 | 91 | 51 | 3 | 170 | 258 | 218 | 307 | 1.23e-11 | 65.1 |
| Msa0535420 | MtrunA17_Chr7g0255711 | 48.276 | 58 | 30 | 0 | 169 | 226 | 90 | 147 | 1.31e-11 | 64.3 |
| Msa0535420 | MtrunA17_Chr4g0054981 | 48.148 | 54 | 28 | 0 | 169 | 222 | 309 | 362 | 1.40e-11 | 65.1 |
| Msa0535420 | MtrunA17_Chr4g0031961 | 43.478 | 69 | 38 | 1 | 158 | 226 | 120 | 187 | 3.05e-11 | 63.2 |
| Msa0535420 | MtrunA17_Chr7g0242521 | 50.000 | 70 | 26 | 3 | 157 | 222 | 5 | 69 | 4.53e-11 | 62.0 |
| Msa0535420 | MtrunA17_Chr1g0190301 | 47.059 | 68 | 34 | 2 | 166 | 231 | 171 | 238 | 4.82e-11 | 63.2 |
| Msa0535420 | MtrunA17_Chr7g0258551 | 47.368 | 57 | 29 | 1 | 167 | 222 | 209 | 265 | 5.56e-11 | 62.8 |
| Msa0535420 | MtrunA17_Chr1g0175091 | 42.647 | 68 | 36 | 2 | 156 | 222 | 246 | 311 | 7.83e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535420 | AT2G01760.1 | 38.403 | 263 | 121 | 5 | 7 | 232 | 4 | 262 | 1.81e-55 | 185 |
| Msa0535420 | AT1G67710.1 | 39.777 | 269 | 122 | 9 | 11 | 243 | 8 | 272 | 3.14e-53 | 182 |
| Msa0535420 | AT3G16857.1 | 35.714 | 308 | 140 | 9 | 10 | 259 | 33 | 340 | 2.80e-50 | 177 |
| Msa0535420 | AT3G16857.2 | 35.714 | 308 | 140 | 9 | 10 | 259 | 33 | 340 | 3.01e-50 | 177 |
| Msa0535420 | AT2G01760.2 | 35.052 | 291 | 120 | 7 | 7 | 232 | 4 | 290 | 1.19e-49 | 170 |
| Msa0535420 | AT4G31920.1 | 36.052 | 233 | 139 | 2 | 10 | 232 | 13 | 245 | 2.33e-45 | 162 |
| Msa0535420 | AT2G25180.1 | 37.917 | 240 | 125 | 5 | 10 | 226 | 13 | 251 | 1.43e-43 | 157 |
| Msa0535420 | AT3G16857.3 | 34.572 | 269 | 118 | 9 | 49 | 259 | 2 | 270 | 5.20e-39 | 145 |
| Msa0535420 | AT5G58080.1 | 37.349 | 249 | 132 | 6 | 10 | 236 | 14 | 260 | 6.74e-39 | 145 |
| Msa0535420 | AT1G67710.2 | 39.810 | 211 | 88 | 8 | 68 | 243 | 1 | 207 | 8.81e-36 | 134 |
| Msa0535420 | AT2G01760.3 | 35.821 | 201 | 89 | 4 | 68 | 232 | 1 | 197 | 4.73e-35 | 129 |
| Msa0535420 | AT5G49240.1 | 30.932 | 236 | 138 | 4 | 9 | 219 | 37 | 272 | 1.96e-33 | 124 |
| Msa0535420 | AT3G62670.1 | 30.258 | 271 | 159 | 9 | 28 | 272 | 53 | 319 | 7.75e-32 | 123 |
| Msa0535420 | AT1G49190.1 | 28.125 | 256 | 153 | 6 | 10 | 234 | 30 | 285 | 5.97e-29 | 115 |
| Msa0535420 | AT1G67710.3 | 38.220 | 191 | 79 | 8 | 88 | 243 | 12 | 198 | 9.15e-27 | 109 |
| Msa0535420 | AT5G07210.2 | 26.296 | 270 | 145 | 6 | 14 | 231 | 16 | 283 | 2.45e-24 | 103 |
| Msa0535420 | AT5G07210.1 | 25.540 | 278 | 145 | 7 | 14 | 231 | 16 | 291 | 8.70e-22 | 96.3 |
| Msa0535420 | AT2G27070.1 | 25.000 | 264 | 141 | 8 | 14 | 222 | 16 | 277 | 1.09e-18 | 87.0 |
| Msa0535420 | AT1G49190.2 | 32.258 | 124 | 83 | 1 | 10 | 132 | 30 | 153 | 1.27e-17 | 84.0 |
| Msa0535420 | AT5G29000.4 | 40.777 | 103 | 52 | 4 | 135 | 235 | 203 | 298 | 1.36e-15 | 76.3 |
| Msa0535420 | AT5G29000.2 | 38.938 | 113 | 60 | 4 | 135 | 245 | 203 | 308 | 1.44e-15 | 77.0 |
| Msa0535420 | AT5G29000.1 | 38.938 | 113 | 60 | 4 | 135 | 245 | 160 | 265 | 1.80e-15 | 76.6 |
| Msa0535420 | AT5G29000.3 | 38.938 | 113 | 60 | 4 | 135 | 245 | 160 | 265 | 1.80e-15 | 76.6 |
| Msa0535420 | AT5G44190.1 | 48.333 | 60 | 31 | 0 | 167 | 226 | 144 | 203 | 1.32e-13 | 71.2 |
| Msa0535420 | AT5G44190.2 | 48.333 | 60 | 31 | 0 | 167 | 226 | 144 | 203 | 1.52e-13 | 70.9 |
| Msa0535420 | AT3G04030.1 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 3.83e-13 | 69.7 |
| Msa0535420 | AT3G04030.3 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 4.34e-13 | 69.7 |
| Msa0535420 | AT4G28610.1 | 47.126 | 87 | 40 | 4 | 170 | 252 | 225 | 309 | 6.89e-13 | 69.3 |
| Msa0535420 | AT3G04450.3 | 39.362 | 94 | 50 | 3 | 136 | 222 | 198 | 291 | 7.00e-13 | 68.6 |
| Msa0535420 | AT5G18240.2 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 7.89e-13 | 68.9 |
| Msa0535420 | AT5G18240.3 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 7.89e-13 | 68.9 |
| Msa0535420 | AT5G18240.5 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 8.76e-13 | 68.9 |
| Msa0535420 | AT5G18240.1 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 8.82e-13 | 68.9 |
| Msa0535420 | AT5G18240.4 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 8.82e-13 | 68.9 |
| Msa0535420 | AT2G01060.1 | 45.783 | 83 | 42 | 2 | 159 | 238 | 4 | 86 | 1.13e-12 | 67.8 |
| Msa0535420 | AT5G59570.2 | 42.105 | 76 | 41 | 1 | 151 | 226 | 125 | 197 | 1.54e-12 | 67.4 |
| Msa0535420 | AT5G59570.1 | 42.105 | 76 | 41 | 1 | 151 | 226 | 125 | 197 | 1.54e-12 | 67.4 |
| Msa0535420 | AT3G46640.3 | 43.210 | 81 | 43 | 2 | 146 | 226 | 123 | 200 | 1.98e-12 | 67.4 |
| Msa0535420 | AT3G46640.2 | 43.210 | 81 | 43 | 2 | 146 | 226 | 123 | 200 | 2.05e-12 | 67.4 |
| Msa0535420 | AT3G46640.1 | 43.210 | 81 | 43 | 2 | 146 | 226 | 123 | 200 | 2.05e-12 | 67.4 |
| Msa0535420 | AT3G04450.1 | 39.362 | 94 | 50 | 3 | 136 | 222 | 198 | 291 | 2.51e-12 | 67.4 |
| Msa0535420 | AT3G04030.2 | 52.830 | 53 | 25 | 0 | 170 | 222 | 45 | 97 | 2.52e-12 | 67.4 |
| Msa0535420 | AT3G04450.4 | 39.362 | 94 | 50 | 3 | 136 | 222 | 158 | 251 | 3.35e-12 | 67.0 |
| Msa0535420 | AT3G04450.2 | 39.362 | 94 | 50 | 3 | 136 | 222 | 158 | 251 | 3.35e-12 | 67.0 |
| Msa0535420 | AT1G69580.1 | 51.852 | 54 | 25 | 1 | 170 | 222 | 34 | 87 | 6.64e-12 | 65.9 |
| Msa0535420 | AT1G69580.2 | 51.852 | 54 | 25 | 1 | 170 | 222 | 34 | 87 | 6.93e-12 | 65.9 |
| Msa0535420 | AT2G20570.1 | 46.552 | 58 | 31 | 0 | 169 | 226 | 152 | 209 | 6.93e-12 | 66.2 |
| Msa0535420 | AT5G05090.1 | 42.697 | 89 | 39 | 3 | 138 | 226 | 61 | 137 | 1.04e-11 | 64.7 |
| Msa0535420 | AT2G40970.1 | 46.552 | 58 | 31 | 0 | 169 | 226 | 104 | 161 | 1.09e-11 | 64.3 |
| Msa0535420 | AT3G10760.1 | 48.276 | 58 | 30 | 0 | 169 | 226 | 104 | 161 | 1.36e-11 | 65.1 |
| Msa0535420 | AT4G18020.8 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 1.67e-11 | 65.1 |
| Msa0535420 | AT4G18020.11 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 1.67e-11 | 65.1 |
| Msa0535420 | AT4G18020.4 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 1.67e-11 | 65.1 |
| Msa0535420 | AT4G18020.5 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 1.67e-11 | 65.1 |
| Msa0535420 | AT4G18020.10 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 1.67e-11 | 65.1 |
| Msa0535420 | AT4G18020.7 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 1.67e-11 | 65.1 |
| Msa0535420 | AT4G18020.3 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 1.94e-11 | 65.1 |
| Msa0535420 | AT4G18020.2 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 1.94e-11 | 65.1 |
| Msa0535420 | AT4G18020.1 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 1.94e-11 | 65.1 |
| Msa0535420 | AT4G18020.6 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 1.94e-11 | 65.1 |
| Msa0535420 | AT4G18020.9 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 1.94e-11 | 65.1 |
| Msa0535420 | AT2G20570.2 | 47.273 | 55 | 29 | 0 | 172 | 226 | 171 | 225 | 4.50e-11 | 63.9 |
| Msa0535420 | AT3G24120.2 | 48.529 | 68 | 31 | 2 | 170 | 233 | 41 | 108 | 5.79e-11 | 62.8 |
| Msa0535420 | AT3G24120.1 | 48.529 | 68 | 31 | 2 | 170 | 233 | 41 | 108 | 6.00e-11 | 62.8 |
Find 56 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATTGTGTCGCAGAATTC+AGG | 0.268438 | 4_1:-11732445 | None:intergenic |
| ACATATTGCCAGCCATTTAC+AGG | 0.282271 | 4_1:+11731939 | Msa0535420:CDS |
| TTCAGTTACCAAATGTAGTA+TGG | 0.293347 | 4_1:+11731214 | Msa0535420:intron |
| CAACGACATTGGGTGGAAAT+TGG | 0.345706 | 4_1:+11732485 | Msa0535420:CDS |
| TGAGTTGTAGGGTAACATTT+TGG | 0.376494 | 4_1:-11731331 | None:intergenic |
| GATAAATCATCATTAACATA+TGG | 0.380393 | 4_1:-11732557 | None:intergenic |
| AATGTGGGGCTTGCGAATAT+TGG | 0.385194 | 4_1:+11731527 | Msa0535420:CDS |
| GGTTCAAGAAAATAGAAAAC+AGG | 0.385857 | 4_1:+11731657 | Msa0535420:CDS |
| CGAATATTGGACTAAGCCTT+TGG | 0.392176 | 4_1:+11731540 | Msa0535420:CDS |
| TGACAGGAATGTTGAGTTGT+AGG | 0.408636 | 4_1:-11731343 | None:intergenic |
| ATCAGAAGCCATACTACATT+TGG | 0.409595 | 4_1:-11731222 | None:intergenic |
| AATAAAGAATATGAAATTGT+TGG | 0.416766 | 4_1:+11731625 | Msa0535420:CDS |
| CTTTCTTTCCAACATGTTGA+AGG | 0.419409 | 4_1:-11731246 | None:intergenic |
| CAAAGAAGGCCCGTTTGTCT+TGG | 0.435563 | 4_1:+11731716 | Msa0535420:CDS |
| AAAAGAAACACTTGCAAAGA+AGG | 0.435703 | 4_1:+11731702 | Msa0535420:CDS |
| TTGCGATGCACAACGACATT+GGG | 0.452490 | 4_1:+11732475 | Msa0535420:CDS |
| TTGAGACCGGCTGGGAATGA+TGG | 0.453544 | 4_1:-11731014 | None:intergenic |
| CTTCAACATGTTGGAAAGAA+AGG | 0.459586 | 4_1:+11731247 | Msa0535420:CDS |
| AATAAATTCTTACTAATGAC+AGG | 0.461511 | 4_1:-11731359 | None:intergenic |
| ACATCTCCTCAATAGAGTTA+AGG | 0.467190 | 4_1:-11731067 | None:intergenic |
| TTCTCGTGACCAAGACAAAC+GGG | 0.467708 | 4_1:-11731725 | None:intergenic |
| TTAACATATGGGAACAAGTT+GGG | 0.470604 | 4_1:-11732545 | None:intergenic |
| TACTCACTCAATGCCGGAGC+AGG | 0.473606 | 4_1:+11732409 | Msa0535420:CDS |
| GCAATAACCTTGAGACCGGC+TGG | 0.475576 | 4_1:-11731023 | None:intergenic |
| AAAAGTGTTGCTCATAATGT+TGG | 0.490442 | 4_1:-11732513 | None:intergenic |
| AAGTCATAAACATCCATGTC+TGG | 0.491105 | 4_1:-11731305 | None:intergenic |
| AGGAAAGAATCATACTATCA+AGG | 0.510494 | 4_1:-11731786 | None:intergenic |
| ATTGCGATGCACAACGACAT+TGG | 0.516098 | 4_1:+11732474 | Msa0535420:CDS |
| TGTAATCGATATCATTATCA+AGG | 0.517908 | 4_1:+11731089 | Msa0535420:CDS |
| GACAGGAATGTTGAGTTGTA+GGG | 0.519779 | 4_1:-11731342 | None:intergenic |
| ATCATGAAGTCTATTGAATG+TGG | 0.526495 | 4_1:+11731511 | Msa0535420:CDS |
| ATTCTCGTGACCAAGACAAA+CGG | 0.526657 | 4_1:-11731726 | None:intergenic |
| ATAAATCATCATTAACATAT+GGG | 0.527171 | 4_1:-11732556 | None:intergenic |
| AAAATGAACCTGTAAATGGC+TGG | 0.527802 | 4_1:-11731947 | None:intergenic |
| TTCTGATGCCTTCAACATGT+TGG | 0.527887 | 4_1:+11731238 | Msa0535420:CDS |
| CATGTTGCAAGAATTAGAAA+CGG | 0.528421 | 4_1:+11731592 | Msa0535420:CDS |
| TGAAATTGTTGGAAGCTCGC+TGG | 0.537116 | 4_1:+11731636 | Msa0535420:CDS |
| ATTAACATATGGGAACAAGT+TGG | 0.538808 | 4_1:-11732546 | None:intergenic |
| CACTCTCCTTAACTCTATTG+AGG | 0.546467 | 4_1:+11731061 | Msa0535420:CDS |
| CTACGTGCAGTCAATCAACT+AGG | 0.547867 | 4_1:+11731763 | Msa0535420:CDS |
| AGCTCAACAGAAGAGACAAA+AGG | 0.548661 | 4_1:+11732332 | Msa0535420:CDS |
| AGAAAACTCTGGTCCTGCTC+CGG | 0.548712 | 4_1:-11732422 | None:intergenic |
| TCATGAAGTCTATTGAATGT+GGG | 0.549366 | 4_1:+11731512 | Msa0535420:CDS |
| ATCATTCCCAGCCGGTCTCA+AGG | 0.552068 | 4_1:+11731016 | Msa0535420:CDS |
| TGAGACCGGCTGGGAATGAT+GGG | 0.577892 | 4_1:-11731013 | None:intergenic |
| CGATGCACAACGACATTGGG+TGG | 0.580466 | 4_1:+11732478 | Msa0535420:CDS |
| AATTGCAATAACCTTGAGAC+CGG | 0.581075 | 4_1:-11731027 | None:intergenic |
| AGAAGCTACTCACTCAATGC+CGG | 0.591913 | 4_1:+11732403 | Msa0535420:CDS |
| CAGAATTCAGGAGAAAACTC+TGG | 0.602905 | 4_1:-11732433 | None:intergenic |
| CATGAAGTCTATTGAATGTG+GGG | 0.606058 | 4_1:+11731513 | Msa0535420:CDS |
| CAATAACCTTGAGACCGGCT+GGG | 0.613963 | 4_1:-11731022 | None:intergenic |
| CAACAGAAGAGACAAAAGGT+AGG | 0.617016 | 4_1:+11732336 | Msa0535420:CDS |
| GACAACCCATCATTCCCAGC+CGG | 0.620153 | 4_1:+11731008 | Msa0535420:CDS |
| TGATGCTCATATGCCAGACA+TGG | 0.629107 | 4_1:+11731292 | Msa0535420:CDS |
| ATGATTTATCATCACTTGTG+TGG | 0.642369 | 4_1:+11732570 | Msa0535420:CDS |
| GTTCAAGAAAATAGAAAACA+GGG | 0.669150 | 4_1:+11731658 | Msa0535420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAGAATATGAAATTGT+TGG | + | chr4_1:11731625-11731644 | Msa0535420:CDS | 15.0% |
| !!! | AATATGTTCTTTTTTCATAT+CGG | - | chr4_1:11731926-11731945 | None:intergenic | 15.0% |
| !!! | TGATTTTAAACTGAAATTTA+TGG | + | chr4_1:11732247-11732266 | Msa0535420:intron | 15.0% |
| !! | ATAAATCATCATTAACATAT+GGG | - | chr4_1:11732559-11732578 | None:intergenic | 15.0% |
| !! | AATAAAGAATATGAAATTGT+TGG | + | chr4_1:11731625-11731644 | Msa0535420:CDS | 15.0% |
| !!! | AATATGTTCTTTTTTCATAT+CGG | - | chr4_1:11731926-11731945 | None:intergenic | 15.0% |
| !!! | TGATTTTAAACTGAAATTTA+TGG | + | chr4_1:11732247-11732266 | Msa0535420:intron | 15.0% |
| !! | ATAAATCATCATTAACATAT+GGG | - | chr4_1:11732559-11732578 | None:intergenic | 15.0% |
| !! | AAAAGATGAAAACTTGAATA+AGG | - | chr4_1:11731136-11731155 | None:intergenic | 20.0% |
| !!! | ATTCAAGTTTTCATCTTTTT+TGG | + | chr4_1:11731137-11731156 | Msa0535420:intron | 20.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | - | chr4_1:11731362-11731381 | None:intergenic | 20.0% |
| !!! | ATATTTCTTTTTTGTAGTGA+TGG | + | chr4_1:11731465-11731484 | Msa0535420:intron | 20.0% |
| !! | AGCATAGTAAAAAAGTAATT+AGG | - | chr4_1:11731809-11731828 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCTCTTAATTTTC+AGG | + | chr4_1:11731862-11731881 | Msa0535420:intron | 20.0% |
| !!! | TGTTTTTCTCTTAATTTTCA+GGG | + | chr4_1:11731863-11731882 | Msa0535420:intron | 20.0% |
| !!! | ATGATTTTCAGAATCTTTTT+TGG | - | chr4_1:11731895-11731914 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTCTGAAAATCA+TGG | + | chr4_1:11731894-11731913 | Msa0535420:CDS | 20.0% |
| !!! | ATATGTTCTTTTTTCATATC+GGG | - | chr4_1:11731925-11731944 | None:intergenic | 20.0% |
| !! | GATAAATCATCATTAACATA+TGG | - | chr4_1:11732560-11732579 | None:intergenic | 20.0% |
| !! | AAAAGATGAAAACTTGAATA+AGG | - | chr4_1:11731136-11731155 | None:intergenic | 20.0% |
| !!! | ATTCAAGTTTTCATCTTTTT+TGG | + | chr4_1:11731137-11731156 | Msa0535420:intron | 20.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | - | chr4_1:11731362-11731381 | None:intergenic | 20.0% |
| !!! | ATATTTCTTTTTTGTAGTGA+TGG | + | chr4_1:11731465-11731484 | Msa0535420:intron | 20.0% |
| !! | AGCATAGTAAAAAAGTAATT+AGG | - | chr4_1:11731809-11731828 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCTCTTAATTTTC+AGG | + | chr4_1:11731862-11731881 | Msa0535420:intron | 20.0% |
| !!! | TGTTTTTCTCTTAATTTTCA+GGG | + | chr4_1:11731863-11731882 | Msa0535420:intron | 20.0% |
| !!! | ATGATTTTCAGAATCTTTTT+TGG | - | chr4_1:11731895-11731914 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTCTGAAAATCA+TGG | + | chr4_1:11731894-11731913 | Msa0535420:CDS | 20.0% |
| !!! | ATATGTTCTTTTTTCATATC+GGG | - | chr4_1:11731925-11731944 | None:intergenic | 20.0% |
| !! | GATAAATCATCATTAACATA+TGG | - | chr4_1:11732560-11732579 | None:intergenic | 20.0% |
| ! | TGTAATCGATATCATTATCA+AGG | + | chr4_1:11731089-11731108 | Msa0535420:CDS | 25.0% |
| ! | GTTCAAGAAAATAGAAAACA+GGG | + | chr4_1:11731658-11731677 | Msa0535420:CDS | 25.0% |
| !! | GTTTTTCTCTTAATTTTCAG+GGG | + | chr4_1:11731864-11731883 | Msa0535420:intron | 25.0% |
| ! | TACAAAAATGAACCTGTAAA+TGG | - | chr4_1:11731954-11731973 | None:intergenic | 25.0% |
| !! | TTTTGCAGAAATACAGAAAT+CGG | + | chr4_1:11732303-11732322 | Msa0535420:intron | 25.0% |
| !!! | AAGTCAAATTTTGTTTCAAG+AGG | - | chr4_1:11732383-11732402 | None:intergenic | 25.0% |
| ! | TGTAATCGATATCATTATCA+AGG | + | chr4_1:11731089-11731108 | Msa0535420:CDS | 25.0% |
| ! | GTTCAAGAAAATAGAAAACA+GGG | + | chr4_1:11731658-11731677 | Msa0535420:CDS | 25.0% |
| !! | GTTTTTCTCTTAATTTTCAG+GGG | + | chr4_1:11731864-11731883 | Msa0535420:intron | 25.0% |
| ! | TACAAAAATGAACCTGTAAA+TGG | - | chr4_1:11731954-11731973 | None:intergenic | 25.0% |
| !! | TTTTGCAGAAATACAGAAAT+CGG | + | chr4_1:11732303-11732322 | Msa0535420:intron | 25.0% |
| !!! | AAGTCAAATTTTGTTTCAAG+AGG | - | chr4_1:11732383-11732402 | None:intergenic | 25.0% |
| GATGAAAACTTGAATAAGGT+AGG | - | chr4_1:11731132-11731151 | None:intergenic | 30.0% | |
| TTCAGTTACCAAATGTAGTA+TGG | + | chr4_1:11731214-11731233 | Msa0535420:intron | 30.0% | |
| ! | CTTCATGATAGAACTTTTTG+TGG | - | chr4_1:11731500-11731519 | None:intergenic | 30.0% |
| ATCATGAAGTCTATTGAATG+TGG | + | chr4_1:11731511-11731530 | Msa0535420:CDS | 30.0% | |
| TCATGAAGTCTATTGAATGT+GGG | + | chr4_1:11731512-11731531 | Msa0535420:CDS | 30.0% | |
| CATGTTGCAAGAATTAGAAA+CGG | + | chr4_1:11731592-11731611 | Msa0535420:CDS | 30.0% | |
| GGTTCAAGAAAATAGAAAAC+AGG | + | chr4_1:11731657-11731676 | Msa0535420:CDS | 30.0% | |
| AAAAGAAACACTTGCAAAGA+AGG | + | chr4_1:11731702-11731721 | Msa0535420:CDS | 30.0% | |
| AGGAAAGAATCATACTATCA+AGG | - | chr4_1:11731789-11731808 | None:intergenic | 30.0% | |
| AAAAGATAACTGACAAACCT+AGG | - | chr4_1:11732030-11732049 | None:intergenic | 30.0% | |
| TGATTTACAACAACAGACTT+AGG | - | chr4_1:11732054-11732073 | None:intergenic | 30.0% | |
| TTGAATAACATGCAAGACTA+AGG | - | chr4_1:11732092-11732111 | None:intergenic | 30.0% | |
| AGTAGTATATTATCACCAAG+AGG | - | chr4_1:11732216-11732235 | None:intergenic | 30.0% | |
| !! | AAAAGTGTTGCTCATAATGT+TGG | - | chr4_1:11732516-11732535 | None:intergenic | 30.0% |
| TTAACATATGGGAACAAGTT+GGG | - | chr4_1:11732548-11732567 | None:intergenic | 30.0% | |
| ATTAACATATGGGAACAAGT+TGG | - | chr4_1:11732549-11732568 | None:intergenic | 30.0% | |
| ATGATTTATCATCACTTGTG+TGG | + | chr4_1:11732570-11732589 | Msa0535420:CDS | 30.0% | |
| GATGAAAACTTGAATAAGGT+AGG | - | chr4_1:11731132-11731151 | None:intergenic | 30.0% | |
| TTCAGTTACCAAATGTAGTA+TGG | + | chr4_1:11731214-11731233 | Msa0535420:intron | 30.0% | |
| ! | CTTCATGATAGAACTTTTTG+TGG | - | chr4_1:11731500-11731519 | None:intergenic | 30.0% |
| ATCATGAAGTCTATTGAATG+TGG | + | chr4_1:11731511-11731530 | Msa0535420:CDS | 30.0% | |
| TCATGAAGTCTATTGAATGT+GGG | + | chr4_1:11731512-11731531 | Msa0535420:CDS | 30.0% | |
| CATGTTGCAAGAATTAGAAA+CGG | + | chr4_1:11731592-11731611 | Msa0535420:CDS | 30.0% | |
| GGTTCAAGAAAATAGAAAAC+AGG | + | chr4_1:11731657-11731676 | Msa0535420:CDS | 30.0% | |
| AAAAGAAACACTTGCAAAGA+AGG | + | chr4_1:11731702-11731721 | Msa0535420:CDS | 30.0% | |
| AGGAAAGAATCATACTATCA+AGG | - | chr4_1:11731789-11731808 | None:intergenic | 30.0% | |
| AAAAGATAACTGACAAACCT+AGG | - | chr4_1:11732030-11732049 | None:intergenic | 30.0% | |
| TGATTTACAACAACAGACTT+AGG | - | chr4_1:11732054-11732073 | None:intergenic | 30.0% | |
| TTGAATAACATGCAAGACTA+AGG | - | chr4_1:11732092-11732111 | None:intergenic | 30.0% | |
| AGTAGTATATTATCACCAAG+AGG | - | chr4_1:11732216-11732235 | None:intergenic | 30.0% | |
| !! | AAAAGTGTTGCTCATAATGT+TGG | - | chr4_1:11732516-11732535 | None:intergenic | 30.0% |
| TTAACATATGGGAACAAGTT+GGG | - | chr4_1:11732548-11732567 | None:intergenic | 30.0% | |
| ATTAACATATGGGAACAAGT+TGG | - | chr4_1:11732549-11732568 | None:intergenic | 30.0% | |
| ATGATTTATCATCACTTGTG+TGG | + | chr4_1:11732570-11732589 | Msa0535420:CDS | 30.0% | |
| AATTGCAATAACCTTGAGAC+CGG | - | chr4_1:11731030-11731049 | None:intergenic | 35.0% | |
| ACATCTCCTCAATAGAGTTA+AGG | - | chr4_1:11731070-11731089 | None:intergenic | 35.0% | |
| ATCAGAAGCCATACTACATT+TGG | - | chr4_1:11731225-11731244 | None:intergenic | 35.0% | |
| CTTTCTTTCCAACATGTTGA+AGG | - | chr4_1:11731249-11731268 | None:intergenic | 35.0% | |
| CTTCAACATGTTGGAAAGAA+AGG | + | chr4_1:11731247-11731266 | Msa0535420:CDS | 35.0% | |
| AAGTCATAAACATCCATGTC+TGG | - | chr4_1:11731308-11731327 | None:intergenic | 35.0% | |
| ! | TGAGTTGTAGGGTAACATTT+TGG | - | chr4_1:11731334-11731353 | None:intergenic | 35.0% |
| CATGAAGTCTATTGAATGTG+GGG | + | chr4_1:11731513-11731532 | Msa0535420:CDS | 35.0% | |
| TAAGCCTTTGGTTGAAAAAG+AGG | + | chr4_1:11731552-11731571 | Msa0535420:CDS | 35.0% | |
| !!! | TTGACCTCTTTTTCAACCAA+AGG | - | chr4_1:11731559-11731578 | None:intergenic | 35.0% |
| AAAAAGAGGTCAAGATCATG+TGG | + | chr4_1:11731566-11731585 | Msa0535420:CDS | 35.0% | |
| ! | CTTTGCAAGTGTTTCTTTTG+AGG | - | chr4_1:11731701-11731720 | None:intergenic | 35.0% |
| AAAATGAACCTGTAAATGGC+TGG | - | chr4_1:11731950-11731969 | None:intergenic | 35.0% | |
| AGTAGTGAATTATGCAGTCA+TGG | + | chr4_1:11732128-11732147 | Msa0535420:intron | 35.0% | |
| AGAGGATGTATAGAAGCTAA+TGG | - | chr4_1:11732198-11732217 | None:intergenic | 35.0% | |
| TTAGCTTCTATACATCCTCT+TGG | + | chr4_1:11732198-11732217 | Msa0535420:intron | 35.0% | |
| AATTGCAATAACCTTGAGAC+CGG | - | chr4_1:11731030-11731049 | None:intergenic | 35.0% | |
| ACATCTCCTCAATAGAGTTA+AGG | - | chr4_1:11731070-11731089 | None:intergenic | 35.0% | |
| ATCAGAAGCCATACTACATT+TGG | - | chr4_1:11731225-11731244 | None:intergenic | 35.0% | |
| CTTTCTTTCCAACATGTTGA+AGG | - | chr4_1:11731249-11731268 | None:intergenic | 35.0% | |
| CTTCAACATGTTGGAAAGAA+AGG | + | chr4_1:11731247-11731266 | Msa0535420:CDS | 35.0% | |
| AAGTCATAAACATCCATGTC+TGG | - | chr4_1:11731308-11731327 | None:intergenic | 35.0% | |
| ! | TGAGTTGTAGGGTAACATTT+TGG | - | chr4_1:11731334-11731353 | None:intergenic | 35.0% |
| CATGAAGTCTATTGAATGTG+GGG | + | chr4_1:11731513-11731532 | Msa0535420:CDS | 35.0% | |
| TAAGCCTTTGGTTGAAAAAG+AGG | + | chr4_1:11731552-11731571 | Msa0535420:CDS | 35.0% | |
| !!! | TTGACCTCTTTTTCAACCAA+AGG | - | chr4_1:11731559-11731578 | None:intergenic | 35.0% |
| AAAAAGAGGTCAAGATCATG+TGG | + | chr4_1:11731566-11731585 | Msa0535420:CDS | 35.0% | |
| ! | CTTTGCAAGTGTTTCTTTTG+AGG | - | chr4_1:11731701-11731720 | None:intergenic | 35.0% |
| AAAATGAACCTGTAAATGGC+TGG | - | chr4_1:11731950-11731969 | None:intergenic | 35.0% | |
| AGTAGTGAATTATGCAGTCA+TGG | + | chr4_1:11732128-11732147 | Msa0535420:intron | 35.0% | |
| AGAGGATGTATAGAAGCTAA+TGG | - | chr4_1:11732198-11732217 | None:intergenic | 35.0% | |
| TTAGCTTCTATACATCCTCT+TGG | + | chr4_1:11732198-11732217 | Msa0535420:intron | 35.0% | |
| CACTCTCCTTAACTCTATTG+AGG | + | chr4_1:11731061-11731080 | Msa0535420:CDS | 40.0% | |
| TTCTGATGCCTTCAACATGT+TGG | + | chr4_1:11731238-11731257 | Msa0535420:CDS | 40.0% | |
| ! | GACAGGAATGTTGAGTTGTA+GGG | - | chr4_1:11731345-11731364 | None:intergenic | 40.0% |
| ! | TGACAGGAATGTTGAGTTGT+AGG | - | chr4_1:11731346-11731365 | None:intergenic | 40.0% |
| CGAATATTGGACTAAGCCTT+TGG | + | chr4_1:11731540-11731559 | Msa0535420:CDS | 40.0% | |
| ATTCTCGTGACCAAGACAAA+CGG | - | chr4_1:11731729-11731748 | None:intergenic | 40.0% | |
| ACATATTGCCAGCCATTTAC+AGG | + | chr4_1:11731939-11731958 | Msa0535420:CDS | 40.0% | |
| ACCTAAGTCTATAGTTGCCT+AGG | + | chr4_1:11732010-11732029 | Msa0535420:intron | 40.0% | |
| ACCTAGGCAACTATAGACTT+AGG | - | chr4_1:11732014-11732033 | None:intergenic | 40.0% | |
| AGCTCAACAGAAGAGACAAA+AGG | + | chr4_1:11732332-11732351 | Msa0535420:CDS | 40.0% | |
| CAACAGAAGAGACAAAAGGT+AGG | + | chr4_1:11732336-11732355 | Msa0535420:CDS | 40.0% | |
| CAGAATTCAGGAGAAAACTC+TGG | - | chr4_1:11732436-11732455 | None:intergenic | 40.0% | |
| CACTCTCCTTAACTCTATTG+AGG | + | chr4_1:11731061-11731080 | Msa0535420:CDS | 40.0% | |
| TTCTGATGCCTTCAACATGT+TGG | + | chr4_1:11731238-11731257 | Msa0535420:CDS | 40.0% | |
| ! | GACAGGAATGTTGAGTTGTA+GGG | - | chr4_1:11731345-11731364 | None:intergenic | 40.0% |
| ! | TGACAGGAATGTTGAGTTGT+AGG | - | chr4_1:11731346-11731365 | None:intergenic | 40.0% |
| CGAATATTGGACTAAGCCTT+TGG | + | chr4_1:11731540-11731559 | Msa0535420:CDS | 40.0% | |
| ATTCTCGTGACCAAGACAAA+CGG | - | chr4_1:11731729-11731748 | None:intergenic | 40.0% | |
| ACATATTGCCAGCCATTTAC+AGG | + | chr4_1:11731939-11731958 | Msa0535420:CDS | 40.0% | |
| ACCTAAGTCTATAGTTGCCT+AGG | + | chr4_1:11732010-11732029 | Msa0535420:intron | 40.0% | |
| ACCTAGGCAACTATAGACTT+AGG | - | chr4_1:11732014-11732033 | None:intergenic | 40.0% | |
| AGCTCAACAGAAGAGACAAA+AGG | + | chr4_1:11732332-11732351 | Msa0535420:CDS | 40.0% | |
| CAACAGAAGAGACAAAAGGT+AGG | + | chr4_1:11732336-11732355 | Msa0535420:CDS | 40.0% | |
| CAGAATTCAGGAGAAAACTC+TGG | - | chr4_1:11732436-11732455 | None:intergenic | 40.0% | |
| TGATGCTCATATGCCAGACA+TGG | + | chr4_1:11731292-11731311 | Msa0535420:CDS | 45.0% | |
| AATGTGGGGCTTGCGAATAT+TGG | + | chr4_1:11731527-11731546 | Msa0535420:CDS | 45.0% | |
| TGAAATTGTTGGAAGCTCGC+TGG | + | chr4_1:11731636-11731655 | Msa0535420:CDS | 45.0% | |
| TTCTCGTGACCAAGACAAAC+GGG | - | chr4_1:11731728-11731747 | None:intergenic | 45.0% | |
| CTACGTGCAGTCAATCAACT+AGG | + | chr4_1:11731763-11731782 | Msa0535420:CDS | 45.0% | |
| AGAAGCTACTCACTCAATGC+CGG | + | chr4_1:11732403-11732422 | Msa0535420:CDS | 45.0% | |
| GACATTGTGTCGCAGAATTC+AGG | - | chr4_1:11732448-11732467 | None:intergenic | 45.0% | |
| ATTGCGATGCACAACGACAT+TGG | + | chr4_1:11732474-11732493 | Msa0535420:CDS | 45.0% | |
| TTGCGATGCACAACGACATT+GGG | + | chr4_1:11732475-11732494 | Msa0535420:CDS | 45.0% | |
| CAACGACATTGGGTGGAAAT+TGG | + | chr4_1:11732485-11732504 | Msa0535420:CDS | 45.0% | |
| TGATGCTCATATGCCAGACA+TGG | + | chr4_1:11731292-11731311 | Msa0535420:CDS | 45.0% | |
| AATGTGGGGCTTGCGAATAT+TGG | + | chr4_1:11731527-11731546 | Msa0535420:CDS | 45.0% | |
| TGAAATTGTTGGAAGCTCGC+TGG | + | chr4_1:11731636-11731655 | Msa0535420:CDS | 45.0% | |
| TTCTCGTGACCAAGACAAAC+GGG | - | chr4_1:11731728-11731747 | None:intergenic | 45.0% | |
| CTACGTGCAGTCAATCAACT+AGG | + | chr4_1:11731763-11731782 | Msa0535420:CDS | 45.0% | |
| AGAAGCTACTCACTCAATGC+CGG | + | chr4_1:11732403-11732422 | Msa0535420:CDS | 45.0% | |
| GACATTGTGTCGCAGAATTC+AGG | - | chr4_1:11732448-11732467 | None:intergenic | 45.0% | |
| ATTGCGATGCACAACGACAT+TGG | + | chr4_1:11732474-11732493 | Msa0535420:CDS | 45.0% | |
| TTGCGATGCACAACGACATT+GGG | + | chr4_1:11732475-11732494 | Msa0535420:CDS | 45.0% | |
| CAACGACATTGGGTGGAAAT+TGG | + | chr4_1:11732485-11732504 | Msa0535420:CDS | 45.0% | |
| CAATAACCTTGAGACCGGCT+GGG | - | chr4_1:11731025-11731044 | None:intergenic | 50.0% | |
| CAAAGAAGGCCCGTTTGTCT+TGG | + | chr4_1:11731716-11731735 | Msa0535420:CDS | 50.0% | |
| AGAAAACTCTGGTCCTGCTC+CGG | - | chr4_1:11732425-11732444 | None:intergenic | 50.0% | |
| CAATAACCTTGAGACCGGCT+GGG | - | chr4_1:11731025-11731044 | None:intergenic | 50.0% | |
| CAAAGAAGGCCCGTTTGTCT+TGG | + | chr4_1:11731716-11731735 | Msa0535420:CDS | 50.0% | |
| AGAAAACTCTGGTCCTGCTC+CGG | - | chr4_1:11732425-11732444 | None:intergenic | 50.0% | |
| GACAACCCATCATTCCCAGC+CGG | + | chr4_1:11731008-11731027 | Msa0535420:CDS | 55.0% | |
| TGAGACCGGCTGGGAATGAT+GGG | - | chr4_1:11731016-11731035 | None:intergenic | 55.0% | |
| TTGAGACCGGCTGGGAATGA+TGG | - | chr4_1:11731017-11731036 | None:intergenic | 55.0% | |
| ATCATTCCCAGCCGGTCTCA+AGG | + | chr4_1:11731016-11731035 | Msa0535420:CDS | 55.0% | |
| GCAATAACCTTGAGACCGGC+TGG | - | chr4_1:11731026-11731045 | None:intergenic | 55.0% | |
| TACTCACTCAATGCCGGAGC+AGG | + | chr4_1:11732409-11732428 | Msa0535420:CDS | 55.0% | |
| CGATGCACAACGACATTGGG+TGG | + | chr4_1:11732478-11732497 | Msa0535420:CDS | 55.0% | |
| GACAACCCATCATTCCCAGC+CGG | + | chr4_1:11731008-11731027 | Msa0535420:CDS | 55.0% | |
| TGAGACCGGCTGGGAATGAT+GGG | - | chr4_1:11731016-11731035 | None:intergenic | 55.0% | |
| TTGAGACCGGCTGGGAATGA+TGG | - | chr4_1:11731017-11731036 | None:intergenic | 55.0% | |
| ATCATTCCCAGCCGGTCTCA+AGG | + | chr4_1:11731016-11731035 | Msa0535420:CDS | 55.0% | |
| GCAATAACCTTGAGACCGGC+TGG | - | chr4_1:11731026-11731045 | None:intergenic | 55.0% | |
| TACTCACTCAATGCCGGAGC+AGG | + | chr4_1:11732409-11732428 | Msa0535420:CDS | 55.0% | |
| CGATGCACAACGACATTGGG+TGG | + | chr4_1:11732478-11732497 | Msa0535420:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 11730993 | 11732595 | 11730993 | ID=Msa0535420;Name=Msa0535420 |
| chr4_1 | mRNA | 11730993 | 11732595 | 11730993 | ID=Msa0535420-mRNA-1;Parent=Msa0535420;Name=Msa0535420-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|5|0|313 |
| chr4_1 | exon | 11730993 | 11731110 | 11730993 | ID=Msa0535420-mRNA-1:exon:3752;Parent=Msa0535420-mRNA-1 |
| chr4_1 | exon | 11731219 | 11731368 | 11731219 | ID=Msa0535420-mRNA-1:exon:3753;Parent=Msa0535420-mRNA-1 |
| chr4_1 | exon | 11731482 | 11731793 | 11731482 | ID=Msa0535420-mRNA-1:exon:3754;Parent=Msa0535420-mRNA-1 |
| chr4_1 | exon | 11731884 | 11731960 | 11731884 | ID=Msa0535420-mRNA-1:exon:3755;Parent=Msa0535420-mRNA-1 |
| chr4_1 | exon | 11732311 | 11732595 | 11732311 | ID=Msa0535420-mRNA-1:exon:3756;Parent=Msa0535420-mRNA-1 |
| chr4_1 | CDS | 11730993 | 11731110 | 11730993 | ID=Msa0535420-mRNA-1:cds;Parent=Msa0535420-mRNA-1 |
| chr4_1 | CDS | 11731219 | 11731368 | 11731219 | ID=Msa0535420-mRNA-1:cds;Parent=Msa0535420-mRNA-1 |
| chr4_1 | CDS | 11731482 | 11731793 | 11731482 | ID=Msa0535420-mRNA-1:cds;Parent=Msa0535420-mRNA-1 |
| chr4_1 | CDS | 11731884 | 11731960 | 11731884 | ID=Msa0535420-mRNA-1:cds;Parent=Msa0535420-mRNA-1 |
| chr4_1 | CDS | 11732311 | 11732595 | 11732311 | ID=Msa0535420-mRNA-1:cds;Parent=Msa0535420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
