AlfalfaGEDB | Msa0535800

M. sativa cultivar zhongmu-4 / Msa0535800

KEGG: K14486
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535800	XP_003604938.2	92.054	667	15	1	1	629	1	667	0.0	1207

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535800	sp\|Q9XED8\|ARFI_ARATH	56.447	636	204	12	18	610	11	616	0.0	647

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535800	G7JUG1	92.054	667	15	1	1	629	1	667	0.0	1207

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TFs/TRs:

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Gene ID	Type	Classification
Msa0535800	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535800	MtrunA17_Chr4g0009751	91.626	621	14	1	1	583	1	621	0.0	1118
Msa0535800	MtrunA17_Chr7g0239061	66.270	673	159	11	18	628	13	679	0.0	823
Msa0535800	MtrunA17_Chr8g0346711	53.673	667	228	13	18	629	28	668	0.0	657
Msa0535800	MtrunA17_Chr2g0276781	49.329	671	259	15	3	619	4	647	0.0	583
Msa0535800	MtrunA17_Chr8g0385791	57.487	374	113	6	19	348	59	430	4.15e-134	412
Msa0535800	MtrunA17_Chr8g0385791	34.685	222	119	6	414	618	597	809	8.67e-28	119
Msa0535800	MtrunA17_Chr4g0046371	41.204	432	185	9	19	392	38	458	1.75e-97	313
Msa0535800	MtrunA17_Chr2g0285461	46.978	364	141	8	17	334	21	378	2.57e-94	310
Msa0535800	MtrunA17_Chr2g0285461	28.421	190	114	7	428	604	683	863	3.85e-14	76.3
Msa0535800	MtrunA17_Chr2g0282961	37.961	461	219	7	19	419	53	506	1.50e-93	300

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0535800	AT4G23980.1	56.447	636	204	12	18	610	11	616	647
Msa0535800	AT4G23980.2	56.447	636	202	13	18	610	11	614	642
Msa0535800	AT2G46530.3	50.906	662	214	11	8	629	28	618	598
Msa0535800	AT2G46530.1	50.825	667	214	13	6	629	2	597	594
Msa0535800	AT3G61830.1	50.621	644	192	10	19	617	25	587	588
Msa0535800	AT1G59750.1	46.429	644	278	11	19	617	22	643	552
Msa0535800	AT1G59750.3	46.429	644	278	11	19	617	22	643	552
Msa0535800	AT1G59750.4	46.656	643	273	11	19	617	22	638	551
Msa0535800	AT1G59750.2	46.656	643	275	10	19	617	22	640	551
Msa0535800	AT3G61830.2	49.757	617	184	10	46	617	1	536	545

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Find 154 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACTTTGACCAACACA+AGG	0.684451	4_1:-12352979	None:intergenic
AACAAGAAGAAACAATAGTT+TGG	0.401479	4_1:-12356973	None:intergenic
AACGGCGTTAGTTGTTTGGT+TGG	0.499230	4_1:-12352417	None:intergenic
AACGTCCTTACATTAGATTC+TGG	0.478848	4_1:-12353805	None:intergenic
AACTCAAGAATTGGTTGCCA+AGG	0.538673	4_1:+12354171	Msa0535800:CDS
AATAATAACAAGAACAATAA+TGG	0.271663	4_1:-12352587	None:intergenic
AATAGTTCCTCACCAACATC+AGG	0.458856	4_1:-12355488	None:intergenic
AATCCCGGATCCGCCCACCG+AGG	0.756569	4_1:+12353930	Msa0535800:CDS
AATGAGAAGGATAGCTAGAA+CGG	0.551009	4_1:-12355725	None:intergenic
ACAAATGGTTCTATCTCCCA+TGG	0.594032	4_1:-12355392	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAGTCAACAACAAGAAAAA+CGG	-	chr4_1:12352712-12352731	None:intergenic	30.0%
TGGTTTGATTCTTGTGTTAA+TGG	+	chr4_1:12352867-12352886	Msa0535800:intron	30.0%
GTTGTTCTGATGAAGAATTA+TGG	+	chr4_1:12352926-12352945	Msa0535800:CDS	30.0%
TTCTGATGAAGAATTATGGA+AGG	+	chr4_1:12352930-12352949	Msa0535800:CDS	30.0%
AATTCTAGTCATGAGAATTG+TGG	+	chr4_1:12353149-12353168	Msa0535800:intron	30.0%
TAATTTAGTCACGAGAATTG+TGG	-	chr4_1:12353203-12353222	None:intergenic	30.0%
CTTGTCGCAATTATTGATAT+CGG	+	chr4_1:12353272-12353291	Msa0535800:intron	30.0%
TTGTCGCAATTATTGATATC+GGG	+	chr4_1:12353273-12353292	Msa0535800:intron	30.0%
TACAATTGAGATTGCATCAA+CGG	-	chr4_1:12353317-12353336	None:intergenic	30.0%
CCAACTACAACAAACAAAAA+AGG	-	chr4_1:12353546-12353565	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	12352384	12357193	12352384	ID=Msa0535800;Name=Msa0535800
chr4_1	mRNA	12352384	12357193	12352384	ID=Msa0535800-mRNA-1;Parent=Msa0535800;Name=Msa0535800-mRNA-1;_AED=0.10;_eAED=0.10;_QI=359\|0.91\|0.92\|1\|0.91\|0.92\|13\|274\|629
chr4_1	exon	12352384	12352776	12352384	ID=Msa0535800-mRNA-1:exon:3985;Parent=Msa0535800-mRNA-1
chr4_1	exon	12352920	12353029	12352920	ID=Msa0535800-mRNA-1:exon:3986;Parent=Msa0535800-mRNA-1
chr4_1	exon	12353562	12353657	12353562	ID=Msa0535800-mRNA-1:exon:3987;Parent=Msa0535800-mRNA-1
chr4_1	exon	12353760	12353816	12353760	ID=Msa0535800-mRNA-1:exon:3988;Parent=Msa0535800-mRNA-1
chr4_1	exon	12353916	12354068	12353916	ID=Msa0535800-mRNA-1:exon:3989;Parent=Msa0535800-mRNA-1
chr4_1	exon	12354151	12354235	12354151	ID=Msa0535800-mRNA-1:exon:3990;Parent=Msa0535800-mRNA-1
chr4_1	exon	12354340	12354430	12354340	ID=Msa0535800-mRNA-1:exon:3991;Parent=Msa0535800-mRNA-1
chr4_1	exon	12354588	12354752	12354588	ID=Msa0535800-mRNA-1:exon:3992;Parent=Msa0535800-mRNA-1
chr4_1	exon	12354843	12354962	12354843	ID=Msa0535800-mRNA-1:exon:3993;Parent=Msa0535800-mRNA-1
chr4_1	exon	12355385	12355497	12355385	ID=Msa0535800-mRNA-1:exon:3994;Parent=Msa0535800-mRNA-1
chr4_1	exon	12355589	12356127	12355589	ID=Msa0535800-mRNA-1:exon:3995;Parent=Msa0535800-mRNA-1
chr4_1	exon	12356243	12356430	12356243	ID=Msa0535800-mRNA-1:exon:3996;Parent=Msa0535800-mRNA-1
chr4_1	exon	12356781	12357193	12356781	ID=Msa0535800-mRNA-1:exon:3997;Parent=Msa0535800-mRNA-1
chr4_1	five_prime_UTR	12352384	12352742	12352384	ID=Msa0535800-mRNA-1:five_prime_utr;Parent=Msa0535800-mRNA-1
chr4_1	CDS	12352743	12352776	12352743	ID=Msa0535800-mRNA-1:cds;Parent=Msa0535800-mRNA-1
chr4_1	CDS	12352920	12353029	12352920	ID=Msa0535800-mRNA-1:cds;Parent=Msa0535800-mRNA-1
chr4_1	CDS	12353562	12353657	12353562	ID=Msa0535800-mRNA-1:cds;Parent=Msa0535800-mRNA-1
chr4_1	CDS	12353760	12353816	12353760	ID=Msa0535800-mRNA-1:cds;Parent=Msa0535800-mRNA-1
chr4_1	CDS	12353916	12354068	12353916	ID=Msa0535800-mRNA-1:cds;Parent=Msa0535800-mRNA-1
chr4_1	CDS	12354151	12354235	12354151	ID=Msa0535800-mRNA-1:cds;Parent=Msa0535800-mRNA-1
chr4_1	CDS	12354340	12354430	12354340	ID=Msa0535800-mRNA-1:cds;Parent=Msa0535800-mRNA-1
chr4_1	CDS	12354588	12354752	12354588	ID=Msa0535800-mRNA-1:cds;Parent=Msa0535800-mRNA-1
chr4_1	CDS	12354843	12354962	12354843	ID=Msa0535800-mRNA-1:cds;Parent=Msa0535800-mRNA-1
chr4_1	CDS	12355385	12355497	12355385	ID=Msa0535800-mRNA-1:cds;Parent=Msa0535800-mRNA-1
chr4_1	CDS	12355589	12356127	12355589	ID=Msa0535800-mRNA-1:cds;Parent=Msa0535800-mRNA-1
chr4_1	CDS	12356243	12356430	12356243	ID=Msa0535800-mRNA-1:cds;Parent=Msa0535800-mRNA-1
chr4_1	CDS	12356781	12356919	12356781	ID=Msa0535800-mRNA-1:cds;Parent=Msa0535800-mRNA-1
chr4_1	three_prime_UTR	12356920	12357193	12356920	ID=Msa0535800-mRNA-1:three_prime_utr;Parent=Msa0535800-mRNA-1

Gene Sequence

>Msa0535800

ATGTTGAATCATGGGTCAAATGTTTCTGCTGAAGTGGGTGGTTGTTCTGATGAAGAATTATGGAAGGCAATTGCAGGACCATTGGTGGATGTTCCTTGTGTTGGTCAAAGTGTTTTCTATTTTCCTCAAGGACACATGGAACAATTGGAGGCTTCTACCAATCAAGAACTGAACCAGAGGATTCCTGTGTTGAAACTTCCTACAAAGATCCTTTGTCGTATCGTGAATATCCATTTACTGGCTGAACAAGAAACAGATGAAGTTTATGCTCAGATTACTTTGGTGCCAGAATCTAATCAAGCTGAGCCTACAATCCCGGATCCGCCCACCGAGGAACTTCCGAGGCCAAAAATTCACTCATTCTGCAAGATCTTAACCGCTTCGGATACCAGTACACATGGTGGCTTCTCTGTTCTCAGGAAACATGCCACAGAATGCCTTCCTCCTTTGGACATGTCCCAACCAACACCAACTCAAGAATTGGTTGCCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCGCGCAGACACCTTCTTACCACTGGATGGAGTACTTTTGTGACTTCAAAAAGATTAGTCGCTGGAGATACCTTTGTGTTTTTGAGAGGGGAAAATGGGGAATTACGTGTTGGAGTGAGGCGTCTTGCTCGTCAGTCAAGTAGCATGCCGTCATCTGTGATTTCTAGCCAGAGCATGCACCTAGGAGTTCTTGCAACTGCCTCCCATGCTGTTGCAACACAGACTCTCTTCGTTGTATATTATAAGCCGAGGACGAGCCAGTTCATCGTAAGTGTGAACAAGTACTTGTCTGCTGTCAATAATAAGTTTGCTGTTGGCATGAGGTTCAAGATGAGGTTTGAGAGTGATGATTCTGCTGAGTCTGACAAAAGGGTTTCACCATGGGAGATAGAACCATTTGTTTCTTCAGCTTCTACAACCACAGTTCAACCTACCGCTGCGAAGACTAAAAGGCCTCGACCAACCAGTGAAATTCCTGATGTTGACACAACATCAGCTGCCTCTATTTTCTGGGATGCTAGGATGTCACAAACTGATATGACCCAACGTATTATGAATAGCAAAACCAACAACAACGCTACATTGAGGAATCAAACCGAAGGAAGTTGGCTGTCGTCTCCCCGTTCTAGCTATCCTTCTCATTTAGTTAACGATACAACAGATGATGGTAAGAGTGTCTCGGCTTGGCCTGTTTCACAGCCTCAATCATCTATACTGAACATCGACCGTATGCATGATCAAGTTGATAAGGAGAACAAGGTCGAGACTGCTACAACTTATCGATTGTTTGGAATTGATCTTATTGATCATTCCAAAAAATCAGCTGCTGTAGAGATAGCATCTTCACATGCAGTAAACGGTAACGGAGTTACCACTGAAATTAGTTCCAGCACCTTGTCGAGTACTGATACTGCCCGTAAGTCTGACATCTCGAAGGCTTCTTTCGAGAGGAAACAAGAACCACAACAAGTTTCACCTAAGGAGACTCAGAACAAGCAGATTTGTAGCAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTTGCAGTTGGTCGCGCTGTGGATTTGGCAACGTTGAATGGTTATGATCAACTCATTGCTGAATTGGAAGAGCTGTTTGACATCAAGGGACAGCTTCAACACCGGAATACATGGGAAATTGTCTTCACTGATGACGAAGGAGATATGATGCTTGTCGGAGATGATCCATGGCTTGAGTTTTGTAACATGGTAAGAAGAATCTTCATTTGTTCCAGCCAAGATGTAAAGAAGATGAAATCAGGTAGCAAACTACCAATATCTTCTTCGATCGAAGAAGGAACTGTAATAAGCTCAGACACAACCGAAAGATGA

Protein sequence

>Msa0535800

MLNHGSNVSAEVGGCSDEELWKAIAGPLVDVPCVGQSVFYFPQGHMEQLEASTNQELNQRIPVLKLPTKILCRIVNIHLLAEQETDEVYAQITLVPESNQAEPTIPDPPTEELPRPKIHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRLARQSSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLSAVNNKFAVGMRFKMRFESDDSAESDKRVSPWEIEPFVSSASTTTVQPTAAKTKRPRPTSEIPDVDTTSAASIFWDARMSQTDMTQRIMNSKTNNNATLRNQTEGSWLSSPRSSYPSHLVNDTTDDGKSVSAWPVSQPQSSILNIDRMHDQVDKENKVETATTYRLFGIDLIDHSKKSAAVEIASSHAVNGNGVTTEISSSTLSSTDTARKSDISKASFERKQEPQQVSPKETQNKQICSRSRTKVQMQGVAVGRAVDLATLNGYDQLIAELEELFDIKGQLQHRNTWEIVFTDDEGDMMLVGDDPWLEFCNMVRRIFICSSQDVKKMKSGSKLPISSSIEEGTVISSDTTER*