AlfalfaGEDB | Msa0535840

M. sativa cultivar zhongmu-4 / Msa0535840

KEGG: K11420
GO: GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF02182.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535840	RHN58540.1	84.471	1011	116	5	1	1001	73	1052	0.0	1670

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535840	sp\|Q8VZ17\|SUVH6_ARATH	61.950	523	182	8	494	1001	270	790	0.0	642

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535840	A0A396HYY4	84.471	1011	116	5	1	1001	73	1052	0.0	1670

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0535840	TR	SET

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535840	MtrunA17_Chr4g0003511	84.471	1011	116	5	1	1001	73	1052	0.0	1670
Msa0535840	MtrunA17_Chr4g0003501	84.356	1010	94	7	1	1001	1	955	0.0	1651
Msa0535840	MtrunA17_Chr5g0399801	73.403	1049	204	13	13	1001	56	1089	0.0	1476
Msa0535840	MtrunA17_Chr7g0232811	42.669	532	218	10	490	1001	75	539	1.82e-126	395
Msa0535840	MtrunA17_Chr8g0354821	40.105	571	313	14	450	998	122	685	7.60e-121	385
Msa0535840	MtrunA17_Chr3g0080761	40.367	545	293	15	480	1000	127	663	2.33e-118	377
Msa0535840	MtrunA17_Chr6g0476111	40.996	522	265	13	516	1001	180	694	4.69e-117	375
Msa0535840	MtrunA17_Chr7g0252211	41.154	520	264	14	516	1001	246	757	8.10e-117	376
Msa0535840	MtrunA17_Chr6g0476121	41.815	507	256	13	527	1001	144	643	7.24e-116	370
Msa0535840	MtrunA17_Chr7g0255181	40.684	526	271	18	493	1000	202	704	1.84e-115	371

Showing 1 to 10 of 50 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535840	AT2G22740.2	61.950	523	182	8	494	1001	270	790	0.0	642
Msa0535840	AT2G22740.1	61.950	523	182	8	494	1001	270	790	0.0	642
Msa0535840	AT2G35160.2	60.078	516	172	5	493	1001	306	794	0.0	637
Msa0535840	AT2G35160.5	60.078	516	172	5	493	1001	270	758	0.0	637
Msa0535840	AT2G35160.3	60.078	516	172	5	493	1001	306	794	0.0	637
Msa0535840	AT2G35160.1	60.078	516	172	5	493	1001	306	794	0.0	637
Msa0535840	AT2G35160.4	60.078	516	172	5	493	1001	306	794	0.0	637
Msa0535840	AT5G04940.2	41.418	536	284	16	483	1000	146	669	3.90e-120	383
Msa0535840	AT5G04940.1	41.418	536	284	16	483	1000	146	669	3.90e-120	383
Msa0535840	AT5G13960.1	40.187	535	277	14	496	1001	104	624	4.14e-114	365

Showing 1 to 10 of 85 entries

Previous1 2 3 4 5…9Next

Find 215 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAATTCAATGGGATG+GGG	0.526952	4_1:+12464561	Msa0535840:CDS
AAAACTCGAAAGTAGTTCCA+AGG	0.612216	4_1:+12463180	Msa0535840:CDS
AAAACTGCTACCAAGTCGAA+AGG	0.659857	4_1:+12463301	Msa0535840:CDS
AAAACTGGCATTGGCGGGTG+TGG	0.558834	4_1:+12462607	Msa0535840:CDS
AAAACTTGAAAGTAGTTCCA+AGG	0.596538	4_1:+12463090	Msa0535840:CDS
AAAAGTGGAATTGGTTGGCA+TGG	0.620927	4_1:+12462313	Msa0535840:CDS
AAACGATGAACCTGCAAAAC+TGG	0.322145	4_1:+12462592	Msa0535840:CDS
AAAGATTAGGGGAGCAACTA+TGG	0.371994	4_1:-12464845	None:intergenic
AAAGGATGTAATTGTACTAA+TGG	0.326952	4_1:+12464354	Msa0535840:CDS
AAAGGTGTACTGAATCATTC+TGG	0.301672	4_1:+12463319	Msa0535840:CDS

Showing 1 to 10 of 215 entries

Previous1 2 3 4 5…22Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCTTATCTGATCAAGTAGAT+GGG	+	chr4_1:12462264-12462283	Msa0535840:CDS	30.0%
CTTGAAAAAGGAATATACCA+TGG	+	chr4_1:12462373-12462392	Msa0535840:CDS	30.0%
AGTGATTTCATCTCATCAAA+TGG	+	chr4_1:12462553-12462572	Msa0535840:CDS	30.0%
ATACGATGCCTTTGATATAT+AGG	-	chr4_1:12462684-12462703	None:intergenic	30.0%
AATATTGATATTGGACAACG+AGG	-	chr4_1:12462744-12462763	None:intergenic	30.0%
TCGTTGTCCAATATCAATAT+TGG	+	chr4_1:12462743-12462762	Msa0535840:CDS	30.0%
TTGTCCAATATCAATATTGG+TGG	+	chr4_1:12462746-12462765	Msa0535840:CDS	30.0%
ACATAATCATCATCATCATG+AGG	+	chr4_1:12463018-12463037	Msa0535840:CDS	30.0%
AAAACTTGAAAGTAGTTCCA+AGG	+	chr4_1:12463090-12463109	Msa0535840:CDS	30.0%
AAGAAACAATACTAGTTGCA+AGG	-	chr4_1:12463837-12463856	None:intergenic	30.0%

Showing 1 to 10 of 263 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	12462062	12465067	12462062	ID=Msa0535840;Name=Msa0535840
chr4_1	mRNA	12462062	12465067	12462062	ID=Msa0535840-mRNA-1;Parent=Msa0535840;Name=Msa0535840-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|1001
chr4_1	exon	12462062	12465067	12462062	ID=Msa0535840-mRNA-1:exon:4002;Parent=Msa0535840-mRNA-1
chr4_1	CDS	12462062	12465067	12462062	ID=Msa0535840-mRNA-1:cds;Parent=Msa0535840-mRNA-1

Gene Sequence

>Msa0535840

ATGGAAAAGGGAGACTCAACTATTGTTGCATCCGTTTCTGCTGATGGTACGAGTGTTGAGGATAAGAGTGGCAAAGATTCAGGTGAAGCTGATAGTCCCAACGAAGAAAAGTATCCTCAAAATTTTGAGTTGAACGAGGATTTGTTTGTTACAAACACTGTGGAACAAACAAGTGACTGTACTTTGAAGGAGGATCCCATGGTCTTATCTGATCAAGTAGATGGGGATAGTTTGGCTAACGATGAACCTGCAAAAGTGGAATTGGTTGGCATGGAAACTATGGATACGGAATTCGCAACTGAAGACTGTACCTTGAAAAAGGAATATACCATGGTCTCATCTCATCAATTTGATGTGATTATTTTAGAGACTTTCGATGTGGAATTTGCAACTGAAAGCTGTAGTTTGAAGAACGAAGACGATGTGCCTATTTTGGAGACTTTTGACGTGGAATTTGCAACTGAAGGCTGTAGTCTGAAGGACGAAAATGCAGTGATTTCATCTCATCAAATGGATGAGTCTACTTTGGCAAACGATGAACCTGCAAAACTGGCATTGGCGGGTGTGGTAACTTTGGATACGGAATTTGCGACAGAAGGCTCCGTAAAACAAGATTTATCCTATATATCAAAGGCATCGTATCCAGCTGGCGAGGCAGCTATGTCTGCTGACTCAAAATCCTCGTTGTCCAATATCAATATTGGTGGTTCCGGTGCTTGTATGAAGGAGGCTTTAACTAAAAGGTATGCTCCTCGTAAAAAAGTTGCAGTGTTCAGAGATTTTCCAAGTTTATGTGGAGGCAATGCTCCCCGTCTCAGTCAGGATGAGTGCCGAAAGGAGCTTTCTTCTTTGAAAAAAGTTGCTGCCACTGACGTAAAAGAAGCAGAAAATAACAAGAGAAAGTTTGATAACACTGTTCAAGATGATTCTGAAGGGAACACTAAACTTCCTGAAAAACATAATCATCATCATCATGAGGTTAACATAAATTCTAAGGAAGTGGTTAAAGCGGAAAACATGAACACTGTAAAACTTGAAAGTAGTTCCAAGGTCTCATCAGGCAGGAAAGTAGTTCAAGGTTTGATGGCAGTGGTTAAAGAGGAAAACATGAACACTGTAAAACTCGAAAGTAGTTCCAAGGTCTCATCGGGCAGGAAAGTAGGTTTGATGTCTAAATCAGGACGGAACGAAAAGGAAAGAAAGGGAAAGAAAATTGATAATGTCCAGCTGGACAGGTCTAAAACTGCTACCAAGTCGAAAGGTGTACTGAATCATTCTGGGCAGCAGCCGTTGAAAAAGAAAAGAGAAAATTGTAGTTCTGATGACATGGGTCAATTAGTAACGTTAGAGAAGAGTTCTCAAGACCCTAATGAAAATAACAAACACTTTAAAAGTGTCCCAAAATCACATAGTTCGAGCGTAAATGTTTTTCCTCTTGGTCGTAGTAATTTGAGTGGTCATGAGAATGACTCAGTGGCCAGGAATAAAGTGAGGAAAACATTGCGCCTGTTCCATGCTTTTCATAGAAAGATTTTGCAGGAAGCCGAAGCAAAACCAAAGTCAAATATGAAAGAAGTAAAGAGGTTTGATTTACAAGCTGCGAAAAAGCTTAAGGAGGAAGGGAGCTGTGTTAATGAAGGGGAGAATATCTTGGGATCTGTTCCAGGGGTTGAAGTTGGTGATGAATTTCAGTTCAGAATAGAGCTTAATATAATTGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTATGTGAAACAAAAAGACAAGATCCTTGCAACTAGTATTGTTTCTTCGGGGGGCTATGCTGATGACTTAGATAACTCAGATGTTTTGATATATACAGGGCAGGGTGGAAATGTGATGAGCAGTGATAAAGAGCCAGAAGATCAAAAGCTTGAAAGGGGAAATCTTGCTTTGAAGAACAGTAGTGAGGTAAAGAATTCTGTTAGAGTGATACGGGGCTATGAATCAATGGATGGTAAAAGAAAGATATATGTTTATGATGGACTTTATGTAGTTGAGTCATGTTGGCAGGATATAGGGCCACGTGGGAAGCTGGTTTATAAGTTTAGCTTGCGAAGAATCCCGGGTCAACCAGAGCTTGGCTTGAAGGAAGTGAAGAAATTGAAAAAGTTCAAAACAAGAGAAGGTCTATGTGTCGAAGATATTTCCTATGGGAAAGAGAAAATTCCGATATGTGCTGTGAACACCATAGATAACGAGAAACCCCCTACATTTAAATACATAACCGAGATGATATATCCTGAATGTTGCAATCTTATCCCTCCAAAAGGATGTAATTGTACTAATGGATGCTCTGACCATAAGAAATGTTGTTGCGTACTCAAAAATGGAGGGGAGATTCCATTTAATCATAATGGGGATATTGTAGAAGTAAAGCCTCTAGTCTATGAGTGTGGTCCTAAATGCAAGTGCCCTTCAACCTGCCATAATAGAGTTAGCCAACTTGGAATAAATATTCAACTCGAAATTTTTAAAACCAATTCAATGGGATGGGGTGTAAGATCCTTAAATTCCATCCCTTCAGGAAGTTTTATCTGTGAATATATTGGCGAGGTTCTTGAAGAAAAGGAAGCTGAACAAAGAACCGGTAATGATGAGTATCTTTTCGATATCGGAAATAACAAAAACAACAATAATCTTTGTGATGGACTTTCAACCCTTTTTCCAGATTCTGACTCAAGTTCAAGTGAAGTAGTGGAGGATTCTGACTTCACTATCGATGCCGCTCAGTTTGGTAATGTGGGGAGATTTGTTAACCATAGTTGCTCCCCTAATCTTTATGCTCAGAATGTCCTTTATGATCATCAAGACAGCAGGGTTCCTCACATCATGTTATTTGCTGCTGAGAACATTCCTCCCTTGCAAGAGCTGACATACGATTACAATTACACGATAGATACAGTTCGTGATTCCGATGGCAATATCAAAAAGAAGTACTGCTTTTGTGGTTCTGTGGAATGTACTGGTAGGTTGTATTGA

Protein sequence

>Msa0535840

MEKGDSTIVASVSADGTSVEDKSGKDSGEADSPNEEKYPQNFELNEDLFVTNTVEQTSDCTLKEDPMVLSDQVDGDSLANDEPAKVELVGMETMDTEFATEDCTLKKEYTMVSSHQFDVIILETFDVEFATESCSLKNEDDVPILETFDVEFATEGCSLKDENAVISSHQMDESTLANDEPAKLALAGVVTLDTEFATEGSVKQDLSYISKASYPAGEAAMSADSKSSLSNINIGGSGACMKEALTKRYAPRKKVAVFRDFPSLCGGNAPRLSQDECRKELSSLKKVAATDVKEAENNKRKFDNTVQDDSEGNTKLPEKHNHHHHEVNINSKEVVKAENMNTVKLESSSKVSSGRKVVQGLMAVVKEENMNTVKLESSSKVSSGRKVGLMSKSGRNEKERKGKKIDNVQLDRSKTATKSKGVLNHSGQQPLKKKRENCSSDDMGQLVTLEKSSQDPNENNKHFKSVPKSHSSSVNVFPLGRSNLSGHENDSVARNKVRKTLRLFHAFHRKILQEAEAKPKSNMKEVKRFDLQAAKKLKEEGSCVNEGENILGSVPGVEVGDEFQFRIELNIIGLHRQIQGGIDYVKQKDKILATSIVSSGGYADDLDNSDVLIYTGQGGNVMSSDKEPEDQKLERGNLALKNSSEVKNSVRVIRGYESMDGKRKIYVYDGLYVVESCWQDIGPRGKLVYKFSLRRIPGQPELGLKEVKKLKKFKTREGLCVEDISYGKEKIPICAVNTIDNEKPPTFKYITEMIYPECCNLIPPKGCNCTNGCSDHKKCCCVLKNGGEIPFNHNGDIVEVKPLVYECGPKCKCPSTCHNRVSQLGINIQLEIFKTNSMGWGVRSLNSIPSGSFICEYIGEVLEEKEAEQRTGNDEYLFDIGNNKNNNNLCDGLSTLFPDSDSSSSEVVEDSDFTIDAAQFGNVGRFVNHSCSPNLYAQNVLYDHQDSRVPHIMLFAAENIPPLQELTYDYNYTIDTVRDSDGNIKKKYCFCGSVECTGRLY*